BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0401 (PAB0401) DE:Hypothetical protein
(205 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75178 hypothetical protein PAB0401 - Pyrococcus abyssi (st... 411 e-114
pir||A71036 hypothetical protein PH1577 - Pyrococcus horikoshii ... 357 5e-98
pir||G72612 hypothetical protein APE1363 - Aeropyrum pernix (str... 92 6e-18
gi|6324595 Yor021cp [Saccharomyces cerevisiae] >gi|1078030|pir||... 80 2e-14
>pir||D75178 hypothetical protein PAB0401 - Pyrococcus abyssi (strain Orsay)
>gi|5458017|emb|CAB49507.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 205
Score = 411 bits (1045), Expect = e-114
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MPYLVIEHLEEISEWLLLEYKHVAEWWGDKLIFTNVKPEEREVLAKIGSVITESITRLPF 60
MPYLVIEHLEEISEWLLLEYKHVAEWWGDKLIFTNVKPEEREVLAKIGSVITESITRLPF
Sbjct: 1 MPYLVIEHLEEISEWLLLEYKHVAEWWGDKLIFTNVKPEEREVLAKIGSVITESITRLPF 60
Query: 61 DRSKVIVLDLQAEEELKPEDIEEDTIIVVGGILGDAIPRGRTKKFITSKMEGVKVRHIGS 120
DRSKVIVLDLQAEEELKPEDIEEDTIIVVGGILGDAIPRGRTKKFITSKMEGVKVRHIGS
Sbjct: 61 DRSKVIVLDLQAEEELKPEDIEEDTIIVVGGILGDAIPRGRTKKFITSKMEGVKVRHIGS 120
Query: 121 VQYSIDGASIVAKLIAEGKRLEEIEYEDNPTIKLDEFSEITLHYAVPKLNGKLLLTPGLI 180
VQYSIDGASIVAKLIAEGKRLEEIEYEDNPTIKLDEFSEITLHYAVPKLNGKLLLTPGLI
Sbjct: 121 VQYSIDGASIVAKLIAEGKRLEEIEYEDNPTIKLDEFSEITLHYAVPKLNGKLLLTPGLI 180
Query: 181 ELQKKELGYYDEDEGEDLGDLFTFE 205
ELQKKELGYYDEDEGEDLGDLFTFE
Sbjct: 181 ELQKKELGYYDEDEGEDLGDLFTFE 205
>pir||A71036 hypothetical protein PH1577 - Pyrococcus horikoshii
>gi|3258006|dbj|BAA30689.1| (AP000006) 208aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 208
Score = 357 bits (907), Expect = 5e-98
Identities = 174/202 (86%), Positives = 191/202 (94%)
Query: 1 MPYLVIEHLEEISEWLLLEYKHVAEWWGDKLIFTNVKPEEREVLAKIGSVITESITRLPF 60
MPYLVIEHLE+ISEWLLLEYKHVA+WWGDKLIFTNVKP+ER++LA+IGSV+TESIT+LP
Sbjct: 1 MPYLVIEHLEDISEWLLLEYKHVAQWWGDKLIFTNVKPKERKILAEIGSVVTESITKLPV 60
Query: 61 DRSKVIVLDLQAEEELKPEDIEEDTIIVVGGILGDAIPRGRTKKFITSKMEGVKVRHIGS 120
DRSKVIVLDLQA+EELKPEDI EDTIIVVGGILGDAIPRGRT+K ITSKMEGVKVRHIG
Sbjct: 61 DRSKVIVLDLQAKEELKPEDISEDTIIVVGGILGDAIPRGRTRKLITSKMEGVKVRHIGR 120
Query: 121 VQYSIDGASIVAKLIAEGKRLEEIEYEDNPTIKLDEFSEITLHYAVPKLNGKLLLTPGLI 180
Q+SIDGASI+AKLI+EGKRLEEIEYE+NPTIKLDEFSEIT HYAVPKLNGKLLLTPGLI
Sbjct: 121 PQFSIDGASIIAKLISEGKRLEEIEYEENPTIKLDEFSEITFHYAVPKLNGKLLLTPGLI 180
Query: 181 ELQKKELGYYDEDEGEDLGDLF 202
ELQKKELGY +EDE + L + F
Sbjct: 181 ELQKKELGYLEEDEDDGLIEFF 202
>pir||G72612 hypothetical protein APE1363 - Aeropyrum pernix (strain K1)
>gi|5105043|dbj|BAA80357.1| (AP000061) 257aa long
hypothetical protein [Aeropyrum pernix]
Length = 257
Score = 91.7 bits (224), Expect = 6e-18
Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 27/209 (12%)
Query: 2 PYLVIEHLEEI-SEWLLLE------------YKHVAEWWGDKLIFTNVKPEEREVLAKIG 48
P +V+E LE+ S WLL E Y+ + L++ V+ V + G
Sbjct: 55 PAIVVELLEDTPSRWLLEELLESYLFAVQMGYRFAVTGATNPLVYAAVRRAGVPVFMERG 114
Query: 49 SVITESITRLPFDRSKVIVLDLQAEEELKPEDIEEDTIIVVGGILGDAIPRGRTKKFITS 108
+ +R I+LDL + + L+PE+ + I+VGGI+GD P+GRT +
Sbjct: 115 YSL---------NRPGCILLDLWSPKRLEPEEASSASYIIVGGIMGDHPPKGRTYLLSSQ 165
Query: 109 KMEGVKVRHIGSVQYSIDGASIVAKLIAEGKRLEEIEYEDNPTIKLDE-----FSEITLH 163
R++G Q S+DGA A L+AEG RL+EIE+E+ ++++ + + L
Sbjct: 166 VYTACAKRNLGPEQLSVDGAVKTAILVAEGYRLDEIEFEEGVEVEVESPVRGVSARVELP 225
Query: 164 YAVPKLNGKLLLTPGLIELQKKELGYYDE 192
YA PK+ G++L++ L+ L + + Y +E
Sbjct: 226 YAYPKVGGRILVSQRLLSLLSRGIIYEEE 254
>gi|6324595 Yor021cp [Saccharomyces cerevisiae] >gi|1078030|pir||S54627
hypothetical protein YOR021c - yeast (Saccharomyces
cerevisiae) >gi|829131|emb|CAA60770.1| (X87331) ORF
OR26.11 [Saccharomyces cerevisiae]
>gi|1420127|emb|CAA99211.1| (Z74929) ORF YOR021c
[Saccharomyces cerevisiae]
Length = 213
Score = 80.4 bits (195), Expect = 2e-14
Identities = 68/216 (31%), Positives = 108/216 (49%), Gaps = 27/216 (12%)
Query: 5 VIEHLEE-ISEWLLLEYKHVAEWWGDKLIFTNVKPE---EREV---LAKIG--------S 49
+IEH+EE SEW++LEY + G + + + PE E+++ L K+G
Sbjct: 4 IIEHMEEGFSEWVILEYSQILREVGAENLILSSLPESTTEKDIPQRLLKLGLRWTTKDLK 63
Query: 50 VITESITRLPFDR-SKVIVLDLQAEEELKPEDIEEDTIIVVGGILGDAIPRGRTKKFITS 108
I E L + +V +LD +A +L+PED + V GGILGD PR RTK+ T+
Sbjct: 64 GINEDFKDLELLKDGRVCLLDPRATIDLQPEDATKFDYFVFGGILGDHPPRDRTKELKTA 123
Query: 109 KMEGVKVRHIGSVQYSIDGASIVAKLIAEGK-RLEEIEYEDNPTIKL--DEFSEITLHYA 165
+ R +G Q + D A +LI + + E+I++ D P + +E +E+ Y
Sbjct: 124 YPNLLISRRLGDKQMTTDTAIRTTQLIIKDRIAFEDIKFIDYPEFRFNKNEATEMPFRYV 183
Query: 166 VPKLNGKLLLTPGLIELQKKELGYYDEDEGEDLGDL 201
+ K GK +L G+++L KK D + L DL
Sbjct: 184 LDK-EGKPILPEGMLDLIKK-------DSAQSLDDL 211
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.140 0.394
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79191645
Number of Sequences: 2977
Number of extensions: 3269419
Number of successful extensions: 6369
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6365
Number of HSP's gapped (non-prelim): 5
length of query: 205
length of database: 189,106,746
effective HSP length: 55
effective length of query: 150
effective length of database: 156,189,961
effective search space: 23428494150
effective search space used: 23428494150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 163 (67.9 bits)