BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0402 555157 555459 101 !not a gene!
         (101 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H71035 hypothetical protein PH1576 - Pyrococcus horikoshii ...   130  4e-30

>pir||H71035 hypothetical protein PH1576 - Pyrococcus horikoshii
           >gi|3258005|dbj|BAA30688.1| (AP000006) 119aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 119
           
 Score =  130 bits (323), Expect = 4e-30
 Identities = 66/101 (65%), Positives = 75/101 (73%)

Query: 1   MHTSAPLGTFNSLATAGHLALRRKKTLSSLSSLRVSKFPCPLAIMISLSSKILLNSSLTS 60
           MHTSAPLGT +SLATAGHLA +RK  L S  SL VSKFPCP A+M S      +NS LT+
Sbjct: 1   MHTSAPLGTLSSLATAGHLAFKRKNILLSFISLNVSKFPCPFAMMTSALLNASINSLLTN 60

Query: 61  LIGTPTILVPVETILPNLSNPSRFRSSTVTSLIIAPSFPAM 101
           L GTPTILVPV+   P+ SNP+ F+SSTV S II PSFPAM
Sbjct: 61  LRGTPTILVPVDITFPSFSNPALFKSSTVASFIIGPSFPAM 101


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.130    0.354 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31166872
Number of Sequences: 2977
Number of extensions: 954557
Number of successful extensions: 2772
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2771
Number of HSP's gapped (non-prelim): 1
length of query: 101
length of database: 189,106,746
effective HSP length: 58
effective length of query: 43
effective length of database: 154,394,500
effective search space: 6638963500
effective search space used: 6638963500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 158 (66.0 bits)