BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0405 (PAB0405) DE:Hypothetical protein
(266 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75179 hypothetical protein PAB0405 - Pyrococcus abyssi (st... 542 e-153
pir||G71034 hypothetical protein PH1567 - Pyrococcus horikoshii ... 504 e-142
gi|11499392 conserved hypothetical protein [Archaeoglobus fulgid... 184 1e-45
pir||A69001 conserved hypothetical protein MTH1005 - Methanobact... 179 4e-44
pir||H72665 hypothetical protein APE0751 - Aeropyrum pernix (str... 160 1e-38
sp|Q57886|Y444_METJA HYPOTHETICAL PROTEIN MJ0444 >gi|2128326|pir... 158 6e-38
gb|AAG20356.1| (AE005109) Vng2233c [Halobacterium sp. NRC-1] 146 2e-34
gb|AAK42525.1| Conserved hypothetical protein [Sulfolobus solfat... 140 2e-32
sp|P34649|YOT3_CAEEL HYPOTHETICAL 58.6 KD PROTEIN ZK632.3 IN CHR... 133 2e-30
gb|AAD23014.1|AC006585_9 (AC006585) putative SUDD-like protein [... 127 1e-28
dbj|BAB09107.1| (AB017069) SUDD-like protein [Arabidopsis thaliana] 127 1e-28
gb|AAF50033.1| (AE003544) CG11660 gene product [Drosophila melan... 125 5e-28
gb|AAC26079.1| (AF013590) extragenic suppressor of the bimD6 mut... 122 6e-27
gi|6324693 similar to a C.elegans ZK632.3 protein; Rio1p [Saccha... 118 7e-26
emb|CAA65511.1| (X96739) RIO1 [Saccharomyces cerevisiae] 118 9e-26
pir||T37504 hypothetical protein SPAC10F6.10 - fission yeast (S... 116 3e-25
sp|Q03021|Y396_THEAC HYPOTHETICAL PROTEIN TA0396 >gi|280362|pir|... 115 6e-25
gi|11425694 sudD (suppressor of bimD6, Aspergillus nidulans) hom... 114 1e-24
gi|4507299 sudD (suppressor of bimD6, Aspergillus nidulans) homo... 112 5e-24
gb|AAF50965.1| (AE003575) CG3008 gene product [Drosophila melano... 107 2e-22
pir||T33172 hypothetical protein M01B12.5 - Caenorhabditis elega... 102 3e-21
pir||H64433 hypothetical protein MJ1073 - Methanococcus jannasch... 92 6e-18
pir||C71164 hypothetical protein PH0512 - Pyrococcus horikoshii ... 89 7e-17
pir||E72539 hypothetical protein APE1602 - Aeropyrum pernix (str... 88 1e-16
pir||B75068 hypothetical protein PAB1013 - Pyrococcus abyssi (st... 86 5e-16
gb|AAK40542.1| Conserved hypothetical protein [Sulfolobus solfat... 83 2e-15
gi|11500002 conserved hypothetical protein [Archaeoglobus fulgid... 77 2e-13
pir||B83049 conserved hypothetical protein PA4780 [imported] - P... 75 9e-13
pir||A75301 SudD-related protein - Deinococcus radiodurans (stra... 73 5e-12
>pir||C75179 hypothetical protein PAB0405 - Pyrococcus abyssi (strain Orsay)
>gi|5458024|emb|CAB49514.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 266
Score = 542 bits (1382), Expect = e-153
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MERLDREIAEVLGLTDKREKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGK 60
MERLDREIAEVLGLTDKREKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGK
Sbjct: 1 MERLDREIAEVLGLTDKREKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGK 60
Query: 61 EANVFAGYNSKGEKIAVKIYRTYTTEFRRIWEYLAADPRIGALPKDIRKLVFVWTRREYK 120
EANVFAGYNSKGEKIAVKIYRTYTTEFRRIWEYLAADPRIGALPKDIRKLVFVWTRREYK
Sbjct: 61 EANVFAGYNSKGEKIAVKIYRTYTTEFRRIWEYLAADPRIGALPKDIRKLVFVWTRREYK 120
Query: 121 NLQRALKYAVRAPEPIAFRNNVLVMEFIGDDMPAPRLKDVEKELEKEDFEELYDFMMGSI 180
NLQRALKYAVRAPEPIAFRNNVLVMEFIGDDMPAPRLKDVEKELEKEDFEELYDFMMGSI
Sbjct: 121 NLQRALKYAVRAPEPIAFRNNVLVMEFIGDDMPAPRLKDVEKELEKEDFEELYDFMMGSI 180
Query: 181 EKLWKRGDMVHGDLSEYNLLLWHEPVIIDWSQATVKRNRMSLTLLYRDIRNVINYFKRKG 240
EKLWKRGDMVHGDLSEYNLLLWHEPVIIDWSQATVKRNRMSLTLLYRDIRNVINYFKRKG
Sbjct: 181 EKLWKRGDMVHGDLSEYNLLLWHEPVIIDWSQATVKRNRMSLTLLYRDIRNVINYFKRKG 240
Query: 241 IDVEDPEEKFRELAGDELWMRNLRSL 266
IDVEDPEEKFRELAGDELWMRNLRSL
Sbjct: 241 IDVEDPEEKFRELAGDELWMRNLRSL 266
>pir||G71034 hypothetical protein PH1567 - Pyrococcus horikoshii
>gi|3257996|dbj|BAA30679.1| (AP000006) 266aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 266
Score = 504 bits (1284), Expect = e-142
Identities = 242/266 (90%), Positives = 256/266 (95%)
Query: 1 MERLDREIAEVLGLTDKREKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGK 60
MERLDREIAEVLGLT++REKDSELFKVFSEVFDKTTVETI+YFYRRG IERLYGVLSTGK
Sbjct: 1 MERLDREIAEVLGLTERREKDSELFKVFSEVFDKTTVETITYFYRRGKIERLYGVLSTGK 60
Query: 61 EANVFAGYNSKGEKIAVKIYRTYTTEFRRIWEYLAADPRIGALPKDIRKLVFVWTRREYK 120
EANVFAGY+S G KIAVKIYRTYTTEFRRIWEYLAADPRIG+LP+DIRKLVFVWTRREYK
Sbjct: 61 EANVFAGYDSNGNKIAVKIYRTYTTEFRRIWEYLAADPRIGSLPRDIRKLVFVWTRREYK 120
Query: 121 NLQRALKYAVRAPEPIAFRNNVLVMEFIGDDMPAPRLKDVEKELEKEDFEELYDFMMGSI 180
NLQRALKYAVRAPEPIAFRNN+L+MEFIGDD+PAPRLKDVEKELEK DFEELYDF M SI
Sbjct: 121 NLQRALKYAVRAPEPIAFRNNILIMEFIGDDLPAPRLKDVEKELEKGDFEELYDFAMRSI 180
Query: 181 EKLWKRGDMVHGDLSEYNLLLWHEPVIIDWSQATVKRNRMSLTLLYRDIRNVINYFKRKG 240
EKLWKRGDMVHGDLSEYN+L+WHEPVIIDWSQATVKRNRMSLTLLYRDIRN+ NYF RKG
Sbjct: 181 EKLWKRGDMVHGDLSEYNILIWHEPVIIDWSQATVKRNRMSLTLLYRDIRNITNYFARKG 240
Query: 241 IDVEDPEEKFRELAGDELWMRNLRSL 266
+DVEDPE KFRELAGDELW RNLR+L
Sbjct: 241 VDVEDPEVKFRELAGDELWERNLRNL 266
>gi|11499392 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450002|pir||C69475 conserved hypothetical protein
AF1804 - Archaeoglobus fulgidus
>gi|2648742|gb|AAB89445.1| (AE000978) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 258
Score = 184 bits (462), Expect = 1e-45
Identities = 97/258 (37%), Positives = 163/258 (62%), Gaps = 8/258 (3%)
Query: 6 REIAEVLGLTDK---REKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGKEA 62
+++ ++ DK +EKD E K+++EV D T++T+ +G I + GV+STGKEA
Sbjct: 2 KDLKKIESYLDKLRIKEKDGEERKIYAEVLDGRTLKTLYKLSAKGYITAMGGVISTGKEA 61
Query: 63 NVFAG---YNSKGEKIAVKIYRTYTTEFRRIWEYLAADPRIGALPKDIRKLVFVWTRREY 119
NVF ++ K +AVKIYR T+EF ++ EYL D R ++ VF+WT +E+
Sbjct: 62 NVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEF 121
Query: 120 KNLQRALKYAVRAPEPIAFRNNVLVMEFIGDD-MPAPRLKDVEKELEKEDFEELYDFMMG 178
+NL+RA + V P+P + NVL+MEFIG+D +PAP L ++ +EL++ D E +++ ++
Sbjct: 122 RNLERAKEAGVSVPQPYTYMKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVE 181
Query: 179 SIEKLWKRGDMVHGDLSEYNLLLWHEPVIIDWSQATVKRNRMSLTLLYRDIRNVINYFKR 238
++++L++ ++VH DLSEYN++ + ID QA R+ M+ + L RD+RN+I +F +
Sbjct: 182 NVKRLYQEAELVHADLSEYNIMYIDKVYFIDMGQAVTLRHPMAESYLERDVRNIIRFFSK 241
Query: 239 KGIDVEDPEEKFRELAGD 256
G+ D EE +E+ G+
Sbjct: 242 YGVKA-DFEEMLKEVKGE 258
>pir||A69001 conserved hypothetical protein MTH1005 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622106|gb|AAB85501.1| (AE000873) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 273
Score = 179 bits (449), Expect = 4e-44
Identities = 103/245 (42%), Positives = 152/245 (62%), Gaps = 8/245 (3%)
Query: 1 MERLDREIAEVLGLTDKREKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGK 60
+ R+D ++ + + KR K E +V SEVFD+ T++T+ G + L G +STGK
Sbjct: 23 VNRVDSDLGRMEAV--KRLKGVEDRRVGSEVFDELTLKTLYKLANSGYLAVLNGAVSTGK 80
Query: 61 EANVFAGYNSKGEKIAVKIYRTYTTEFRRIWEYLAADPRIGALPKDIRKLVFVWTRREYK 120
EANVF G + +AVKIYR T++F+++ Y+ DPR + R+LV W +E++
Sbjct: 81 EANVFKGITDTDDFVAVKIYRVATSDFKKMQYYIQGDPRFKVRTTNRRQLVQAWVNKEFR 140
Query: 121 NLQRALKYAVRAPEPIAFRNNVLVMEFIG-DDMPAPRLKDVEKELEKEDFEELYDFMMGS 179
NL+RAL+ VR PEP+ R+NVL+MEFIG D +PAP ++D E +E E + ++M
Sbjct: 141 NLKRALEAGVRVPEPVTARDNVLIMEFIGKDGVPAPTMRDAPPEDPEEALETIIEYM--- 197
Query: 180 IEKLWKRGDMVHGDLSEYNLL-LWHEPVIIDWSQATVKRNRMSLTLLYRDIRNVINYFKR 238
+L+K +VHGDLS +N+L EPVIID SQA V + ++ LL RDI N+I F+R
Sbjct: 198 -HRLYKGARLVHGDLSFFNILNHCGEPVIIDVSQAMVLDHPLAGELLERDIENIIRDFRR 256
Query: 239 KGIDV 243
G+ V
Sbjct: 257 IGVSV 261
>pir||H72665 hypothetical protein APE0751 - Aeropyrum pernix (strain K1)
>gi|5104413|dbj|BAA79728.1| (AP000060) 266aa long
hypothetical protein [Aeropyrum pernix]
Length = 266
Score = 160 bits (401), Expect = 1e-38
Identities = 86/228 (37%), Positives = 138/228 (59%), Gaps = 4/228 (1%)
Query: 16 DKREKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGKEANVFAGYNSKGEKI 75
++R KD ++FK+ EVFD T+ + Y R ++ L G +S+GKE+ V+ G +
Sbjct: 15 EERVKDRDMFKIVDEVFDSITLSHLYRLYSRKVLRELKGSISSGKESKVYWGVAWDRSDV 74
Query: 76 AVKIYRTYTTEFRR-IWEYLAADPRIGALPK-DIRKLVFVWTRREYKNLQRALKYAVRAP 133
AVKIY ++T++FR+ I +Y+ DPR +P +IR+L++ W R+EY+NL+R + VR P
Sbjct: 75 AVKIYLSFTSDFRKSIRKYIVGDPRFEDIPAGNIRRLIYEWARKEYRNLRRMRESGVRVP 134
Query: 134 EPIAFRNNVLVMEFIGD-DMPAPRLKDVEKELEKEDFEELYDFMMGSIEKLWKRGDMVHG 192
P+A N++VMEF+G+ AP L + +EL++ + E + ++ E + R +VH
Sbjct: 135 RPVAVEANIIVMEFLGEKGYRAPTLAEAVEELDRGEAEAIAAEVLRQAEAIVCRARLVHA 194
Query: 193 DLSEYNLLLWH-EPVIIDWSQATVKRNRMSLTLLYRDIRNVINYFKRK 239
DLSEYN+L+W EP IID SQA + + L RD+ N+ + K
Sbjct: 195 DLSEYNILVWRGEPWIIDVSQAVPHSHPNAEEFLERDVENLHRFLTGK 242
>sp|Q57886|Y444_METJA HYPOTHETICAL PROTEIN MJ0444 >gi|2128326|pir||D64355 hypothetical
protein MJ0444 - Methanococcus jannaschii
>gi|1499237|gb|AAB98431.1| (U67495) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 290
Score = 158 bits (396), Expect = 6e-38
Identities = 92/258 (35%), Positives = 157/258 (60%), Gaps = 11/258 (4%)
Query: 3 RLDREIAEVLGLTDKREKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGKEA 62
+LDRE + + +K K E K +EVFDK T+ T+ + G++++GKEA
Sbjct: 31 QLDREYQKEI--LEKERKFLEDLKTANEVFDKRTLMTLFSLLAGKHLTEYIGIVNSGKEA 88
Query: 63 NVFAGYNSKGEKIAVKIYRTYTTEFRRIWEYLAADPRIGALPKDIRKLVFVWTRREYKNL 122
VF K + AVK+YR T +F+ + +Y+ DPR R+++ W +E++NL
Sbjct: 89 VVFKARKGKFYR-AVKVYRVATCDFKTMSKYIQGDPRFHLRKSSRRQIIHAWVEKEFRNL 147
Query: 123 QRALKYAVRAPEPIAFRNNVLVMEFIG-DDMPAPRLKDVEKELEKEDFEELYDFMMGSIE 181
+RA + + AP+ R NVLVM+F+G +PAP+LKD ++ D+E+ + + S++
Sbjct: 148 RRASE-IINAPKARLRRENVLVMDFVGYRGIPAPKLKD----MQDLDWEKYFKIIKESMK 202
Query: 182 KLWKRGDMVHGDLSEYNLLLW-HEPVIIDWSQATVKRNRMSLTLLYRDIRNVINYFKRKG 240
KL++ G++VHGDLSEYN+L+ EPV ID+SQ+ + ++ ++ LL RD N+ N+F+RK
Sbjct: 203 KLYEEGELVHGDLSEYNILVKDDEPVFIDFSQSVITQHPLAHPLLIRDCINICNFFRRKR 262
Query: 241 IDVEDPEEKFRELAGDEL 258
+D + ++ ++ + G E+
Sbjct: 263 VDC-NYKDLYKYITGKEI 279
>gb|AAG20356.1| (AE005109) Vng2233c [Halobacterium sp. NRC-1]
Length = 231
Score = 146 bits (366), Expect = 2e-34
Identities = 83/197 (42%), Positives = 123/197 (62%), Gaps = 8/197 (4%)
Query: 54 GVLSTGKEANVFAGYNSKGEKIAVKIYRTYTTEFRRIWEYLAADPRIGALPKDIRKLVFV 113
G +STGKEANV+ +++G +A+K+YR + F+++ YL DPR L D + +V
Sbjct: 3 GPISTGKEANVYEALDAEGGDVALKVYRINASNFQQMRAYLEGDPRFEGLRGDKKAVVLS 62
Query: 114 WTRREYKNLQRALKYAVRAPEPIAFRNNVLVMEFIG-DDMPAPRLKDVEKELEKEDFEEL 172
WTR+E+ NL+RA VR P P+A + NVLVME IG + AP L DV+ E + +E +
Sbjct: 63 WTRKEFSNLRRAKAAGVRVPAPLAVQRNVLVMELIGREGDAAPTLSDVDIENPQMAYEVV 122
Query: 173 YDFMMGSIEKLWKRGDMVHGDLSEYNLLLWH-EPVIIDWSQATVKRNRMSLTLLYRDIRN 231
++ + +L+ G +VHGDLSEYN++++ E V+ID QA + S T L RD RN
Sbjct: 123 REY----VRRLYDAG-LVHGDLSEYNVVVYEGELVVIDVGQAVTIHHPNSATFLERDCRN 177
Query: 232 VINYFKRKGIDVEDPEE 248
V N+F R+G D DP++
Sbjct: 178 VANFFARQGADA-DPDD 193
>gb|AAK42525.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 254
Score = 140 bits (349), Expect = 2e-32
Identities = 86/237 (36%), Positives = 134/237 (56%), Gaps = 7/237 (2%)
Query: 16 DKREKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGKEANVFAGYNSKGEKI 75
+KR KD +LFKV D T + RR I+ G +S+GKEA ++
Sbjct: 11 EKRRKDEDLFKVVDSTIDYRTYLNLIQIARRLNIKEYLGAISSGKEARIYPARTFDDTYY 70
Query: 76 AVKIYRTYTTEFRR-IWEYLAADPRIGALP-KDIRKLVFVWTRREYKNLQRALKYAVRAP 133
AVKIY T T + +R I +Y D R + + ++L+ W ++E+KNL R + R P
Sbjct: 71 AVKIYYTSTAQSKRAIKKYTIGDIRFEDIKVTNTKQLINTWAKKEFKNLSRLYEAGTRVP 130
Query: 134 EPIAFRNNVLVMEFIGDD-MPAPRLKDVEKELEKEDFEELYDFMMGSIEKLWKRGDMVHG 192
+PI NVLVMEFIG++ + AP LK++ E E + LY+ ++ +E + K ++HG
Sbjct: 131 KPILVFENVLVMEFIGENGIRAPLLKELSDE---EITQGLYEDLIQQVEIMVKGAKLIHG 187
Query: 193 DLSEYNLLLW-HEPVIIDWSQATVKRNRMSLTLLYRDIRNVINYFKRKGIDVEDPEE 248
DLSEYN++++ ++ IID QA ++TLL RD+ N+ +F+ KGI++ EE
Sbjct: 188 DLSEYNVIVYDNKCYIIDVGQAVPIDYEDAITLLKRDLDNINRFFENKGINIRPTEE 244
>sp|P34649|YOT3_CAEEL HYPOTHETICAL 58.6 KD PROTEIN ZK632.3 IN CHROMOSOME III
>gi|482171|pir||S40935 hypothetical protein ZK632.3 -
Caenorhabditis elegans >gi|3881694|emb|CAA80180.1|
(Z22181) contains similarity to Pfam domain: PF01163
(RIO1/ZK632.3/MJ0444 family), Score=486.2,
E-value=8.3e-143, N=1~cDNA EST EMBL:M89162 comes from
this gene~cDNA EST yk377c11.3 comes from this gene~cDNA
EST yk377c11.5 comes from this gene~cDNA EST y>
Length = 510
Score = 133 bits (331), Expect = 2e-30
Identities = 81/227 (35%), Positives = 125/227 (54%), Gaps = 8/227 (3%)
Query: 18 REKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGKEANVFAGYNSKGEKIAV 77
R KD E D T + + +G+ + + G+++TGKE+ V A+
Sbjct: 215 RNKDKEEKATMDTSVDSDTRLLLLKWINQGVFDSVDGIIATGKESAVLHAAQDSATSYAI 274
Query: 78 KIYRTYTTEFRRIWEYLAADPRIGALPKDIRKLVFVWTRREYKNLQRALKYAVRAPEPIA 137
K+Y+T +EF+ EY+ D R K+ R ++ +W RE+ NL R K+ + P+P+
Sbjct: 275 KVYKTTLSEFKNRSEYVKDDFRF----KNPRGVLKIWAEREFMNLSRMAKHGLPCPQPVK 330
Query: 138 FRNNVLVMEFIGDD-MPAPRLKDVEKELEKED-FEELYDFMMGSIEKLWKRGDMVHGDLS 195
R NVLVM F+GD + APRLK+VE E +D +YD + + +++K +VH DLS
Sbjct: 331 VRRNVLVMSFLGDQGLAAPRLKNVEWEFFTDDERRNVYDQVQSIMCRMYKECLLVHADLS 390
Query: 196 EYNLLLW--HEPVIIDWSQATVKRNRMSLTLLYRDIRNVINYFKRKG 240
E+NLLL ++ +ID SQA + SL L RDI+N+I +F R G
Sbjct: 391 EFNLLLTPDNKVHVIDVSQAMDLSHPRSLQFLTRDIQNIITFFTRIG 437
>gb|AAD23014.1|AC006585_9 (AC006585) putative SUDD-like protein [Arabidopsis thaliana]
Length = 537
Score = 127 bits (317), Expect = 1e-28
Identities = 84/240 (35%), Positives = 127/240 (52%), Gaps = 11/240 (4%)
Query: 15 TDKREKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGKEANVFAGYNSKGEK 74
TDK ++ + + D T + RG+ + G +STGKEANV+ S G +
Sbjct: 135 TDKADRAT-----VEQALDPRTRMVLFRMLNRGVFNDVNGCISTGKEANVYHATKSDGSE 189
Query: 75 IAVKIYRTYTTEFRRIWEYLAADPRI--GALPKDIRKLVFVWTRREYKNLQRALKYAVRA 132
+A+K+Y+T F+ Y+ D R G + RK+V W +E +NL+R +R
Sbjct: 190 LAIKVYKTSVLVFKDRDRYVQGDYRFRYGYCRHNPRKMVKTWAEKEQRNLKRLHAAGIRC 249
Query: 133 PEPIAFRNNVLVMEFIG-DDMPAPRLKDVEKELEKEDFEELYDFMMGSIEKLWKRGDMVH 191
P I R +VLVMEFIG D APRLKD L+K E Y ++ + L+++ +VH
Sbjct: 250 PAVILLRLHVLVMEFIGRDGWAAPRLKDAALSLDK--LRECYLELIIQMRVLYQKCKLVH 307
Query: 192 GDLSEYNLLLWHEPV-IIDWSQATVKRNRMSLTLLYRDIRNVINYFKRKGIDVEDPEEKF 250
GDLSEYN+L + + IID SQ+ + ++L L D +V ++FK+ G+ V E F
Sbjct: 308 GDLSEYNILYFEGHLYIIDVSQSVDLDHPLALNFLREDCDHVSDFFKKHGVAVMTIRELF 367
>dbj|BAB09107.1| (AB017069) SUDD-like protein [Arabidopsis thaliana]
Length = 531
Score = 127 bits (317), Expect = 1e-28
Identities = 84/240 (35%), Positives = 127/240 (52%), Gaps = 11/240 (4%)
Query: 15 TDKREKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGKEANVFAGYNSKGEK 74
TDK ++ + + D T + RG+ + G +STGKEANV+ S G +
Sbjct: 134 TDKADRAT-----VEQALDPRTRMVLFRMLNRGVFNDVNGCISTGKEANVYHATKSDGSE 188
Query: 75 IAVKIYRTYTTEFRRIWEYLAADPRI--GALPKDIRKLVFVWTRREYKNLQRALKYAVRA 132
+A+K+Y+T F+ Y+ D R G + RK+V W +E +NL+R +R
Sbjct: 189 LAIKVYKTSVLVFKDRDRYVQGDYRFRYGYCRHNPRKMVKTWAEKEQRNLKRLHAAGIRC 248
Query: 133 PEPIAFRNNVLVMEFIG-DDMPAPRLKDVEKELEKEDFEELYDFMMGSIEKLWKRGDMVH 191
P I R +VLVMEFIG D APRLKD L+K E Y ++ + L+++ +VH
Sbjct: 249 PAVILLRLHVLVMEFIGRDGWAAPRLKDAALSLDK--LRECYLELIIQMRVLYQKCKLVH 306
Query: 192 GDLSEYNLLLWHEPV-IIDWSQATVKRNRMSLTLLYRDIRNVINYFKRKGIDVEDPEEKF 250
GDLSEYN+L + + IID SQ+ + ++L L D +V ++FK+ G+ V E F
Sbjct: 307 GDLSEYNILYFEGHLYIIDVSQSVDLDHPLALNFLREDCDHVSDFFKKHGVAVMTIRELF 366
>gb|AAF50033.1| (AE003544) CG11660 gene product [Drosophila melanogaster]
Length = 585
Score = 125 bits (311), Expect = 5e-28
Identities = 81/239 (33%), Positives = 127/239 (52%), Gaps = 7/239 (2%)
Query: 30 EVFDKTTVETISYFYRRGIIERLYGVLSTGKEANVFAGYNSKGEK-IAVKIYRTYTTEFR 88
+V D T + RG+I+ + G +STGKEANV+ + GE+ A+KIY+T F+
Sbjct: 183 QVMDPRTRMILFKLLNRGMIQEINGCISTGKEANVYHAVSKNGEEEFAIKIYKTSILVFK 242
Query: 89 RIWEYLAADPRI--GALPKDIRKLVFVWTRREYKNLQRALKYAVRAPEPIAFRNNVLVME 146
+Y++ + R G + RK+V W +E +N R V PEPI R++VLVM
Sbjct: 243 DRDKYVSGEFRFRHGYCKHNPRKMVRTWAEKEMRNYLRMRNAGVPVPEPILLRSHVLVMR 302
Query: 147 FIG-DDMPAPRLKDVEKELEKEDFEELYDFMMGSIEKLWKRGDMVHGDLSEYNLLLWH-E 204
F G D PAP+LKDVE K ELY + + +++ + +VH DLSE+N+LL +
Sbjct: 303 FCGRDGWPAPKLKDVELSTSKA--RELYRDCVVIMWRIYNQCRLVHADLSEFNILLQDGQ 360
Query: 205 PVIIDWSQATVKRNRMSLTLLYRDIRNVINYFKRKGIDVEDPEEKFRELAGDELWMRNL 263
VIID SQ+ + S L +D N+ +F+++ + +E F + + N+
Sbjct: 361 LVIIDVSQSVEHDHPHSFDFLRKDCTNISEFFRKRAVATMTVKELFDFITDQTITTENM 419
>gb|AAC26079.1| (AF013590) extragenic suppressor of the bimD6 mutation [Aspergillus
nidulans]
Length = 558
Score = 122 bits (302), Expect = 6e-27
Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 14/226 (6%)
Query: 30 EVFDKTTVETISYFYRRGIIERLYGVLSTGKEANVFAG-------YNSKGEKIAVKIYRT 82
+V D T + R I+ ++G LSTGKEANV+ +++ A+K+Y+T
Sbjct: 158 QVLDPRTRMILLQMINRNIVSEIHGCLSTGKEANVYHAMLQPEDDFDAAPIHRAIKVYKT 217
Query: 83 YTTEFRRIWEYLAADPRI--GALPKDIRKLVFVWTRREYKNLQRALKYAVRAPEPIAFRN 140
F+ +Y+ + R G + R +V +W +E +NL+R + PEPI R
Sbjct: 218 SILVFKDRDKYVTGEFRFRSGYNKSNNRAMVKLWAEKEMRNLRRIYAAGIPCPEPINLRL 277
Query: 141 NVLVMEFIGDD--MPAPRLKDVEKELE--KEDFEELYDFMMGSIEKLWKRGDMVHGDLSE 196
+VLVM F+G+ + APRLKDV+ + + + ELY M+G + +++ +VH DLSE
Sbjct: 278 HVLVMGFVGNSKGIAAPRLKDVDFNISDPESKWRELYIDMLGYMRVMYQTCHLVHADLSE 337
Query: 197 YNLLLWHEPV-IIDWSQATVKRNRMSLTLLYRDIRNVINYFKRKGI 241
YN L ++ + +ID SQ+ + SL L DI+NV ++F+RKG+
Sbjct: 338 YNTLYHNDKLYVIDVSQSVEHDHPRSLEFLRMDIKNVSDFFRRKGV 383
>gi|6324693 similar to a C.elegans ZK632.3 protein; Rio1p [Saccharomyces
cerevisiae] >gi|2500508|sp|Q12196|RIO1_YEAST RIO1
PROTEIN >gi|2133104|pir||S61006 RIO1 protein - yeast
(Saccharomyces cerevisiae) >gi|1050832|emb|CAA62127.1|
(X90518) putative [Saccharomyces cerevisiae]
>gi|1164964|emb|CAA64039.1| (X94335) YOR3266c
[Saccharomyces cerevisiae] >gi|1420315|emb|CAA99317.1|
(Z75027) ORF YOR119c [Saccharomyces cerevisiae]
Length = 484
Score = 118 bits (293), Expect = 7e-26
Identities = 83/254 (32%), Positives = 127/254 (49%), Gaps = 28/254 (11%)
Query: 17 KREKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGKEANVFAGYNSKGE--- 73
K KD V D T+ + RG+I L G LSTGKEANV+ + G+
Sbjct: 43 KTSKDKANRATVENVLDPRTMRFLKSMVTRGVIADLNGCLSTGKEANVYHAFAGTGKAPV 102
Query: 74 ------------------KIAVKIYRTYTTEFRRIWEYLAADPRI--GALPKDIRKLVFV 113
+ A+KIY+T F+ Y+ + R + RK++ +
Sbjct: 103 IDEETGQYEVLETDGSRAEYAIKIYKTSILVFKDRERYVDGEFRFRNSRSQHNPRKMIKI 162
Query: 114 WTRREYKNLQRALKYAV-RAPEPIAFRNNVLVMEFI--GDDMPAPRLKDVEKELEKEDFE 170
W +E++NL+R + V AP+PI +NNVLVMEF+ G+ +P+LKD + E F
Sbjct: 163 WAEKEFRNLKRIYQSGVIPAPKPIEVKNNVLVMEFLSRGNGFASPKLKDYPYKNRDEIF- 221
Query: 171 ELYDFMMGSIEKLWKRGDMVHGDLSEYNLLLWHEPV-IIDWSQATVKRNRMSLTLLYRDI 229
Y M+ + L++ +VH DLSEYN ++ + + +ID SQ+ + MSL L DI
Sbjct: 222 HYYHTMVAYMRLLYQVCRLVHADLSEYNTIVHDDKLYMIDVSQSVEPEHPMSLDFLRMDI 281
Query: 230 RNVINYFKRKGIDV 243
+NV YF++ GI +
Sbjct: 282 KNVNLYFEKMGISI 295
>emb|CAA65511.1| (X96739) RIO1 [Saccharomyces cerevisiae]
Length = 354
Score = 118 bits (292), Expect = 9e-26
Identities = 83/254 (32%), Positives = 127/254 (49%), Gaps = 28/254 (11%)
Query: 17 KREKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGKEANVFAGYNSKGE--- 73
K KD V D T+ + RG+I L G LSTGKEANV+ + G+
Sbjct: 43 KTSKDKANRATVENVLDPRTMRFLKSMVTRGVIADLNGCLSTGKEANVYHAFAGTGKAPV 102
Query: 74 ------------------KIAVKIYRTYTTEFRRIWEYLAADPRI--GALPKDIRKLVFV 113
+ A+KIY+T F+ Y+ + R + RK++ +
Sbjct: 103 IDEETGQYEVLETDGSRAEYAIKIYKTSILVFKDRERYVDGEFRFRNSRSQHNPRKMIKI 162
Query: 114 WTRREYKNLQRALKYAV-RAPEPIAFRNNVLVMEFI--GDDMPAPRLKDVEKELEKEDFE 170
W +E++NL+R + V AP+PI +NNVLVMEF+ G+ +P+LKD + E F
Sbjct: 163 WAEKEFRNLKRIYQSGVIPAPKPIEVKNNVLVMEFLSRGNAFASPKLKDYPYKNRDEIF- 221
Query: 171 ELYDFMMGSIEKLWKRGDMVHGDLSEYNLLLWHEPV-IIDWSQATVKRNRMSLTLLYRDI 229
Y M+ + L++ +VH DLSEYN ++ + + +ID SQ+ + MSL L DI
Sbjct: 222 HYYHTMVAYMRLLYQVCRLVHADLSEYNTIVHDDKLYMIDVSQSVEPEHPMSLDFLRMDI 281
Query: 230 RNVINYFKRKGIDV 243
+NV YF++ GI +
Sbjct: 282 KNVNLYFEKMGISI 295
>pir||T37504 hypothetical protein SPAC10F6.10 - fission yeast
(Schizosaccharomyces pombe) >gi|2661615|emb|CAA15723.1|
(AL009197) hypothetical protein [Schizosaccharomyces
pombe]
Length = 521
Score = 116 bits (287), Expect = 3e-25
Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 7/224 (3%)
Query: 20 KDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGKEANVFAGYNSKGEKIAVKI 79
KD +V D T + G I + G +STGKEANV+ N G+ A+KI
Sbjct: 114 KDKSDRATSEQVLDPRTRMILLKLINNGTISEINGCISTGKEANVYHATNEDGKHFAIKI 173
Query: 80 YRTYTTEFRRIWEYLAADPRI--GALPKDIRKLVFVWTRREYKNLQRALKYAVRAPEPIA 137
Y+T F+ Y++ + R G ++ RK+V +W +E +NL+R + PEPI
Sbjct: 174 YKTSILVFKDRDRYVSGEFRFRHGYNKRNPRKMVRLWAEKEIRNLKRVAAAGIPCPEPIL 233
Query: 138 FRNNVLVMEFIGD--DMPAPRLKDVEKELEKEDFEELYDFMMGSIEKLWKRGDMVHGDLS 195
+ +VL+M F+GD P+LKD+ ++ + +LY + ++ L+ +VH DLS
Sbjct: 234 LKQHVLLMSFLGDKKGWAYPKLKDI--DMTPGEATKLYQLVARNMRILFHVCHLVHADLS 291
Query: 196 EYNLLLWHEPV-IIDWSQATVKRNRMSLTLLYRDIRNVINYFKR 238
EYNLL V ID SQ+ + S+ L DI N+ +F+R
Sbjct: 292 EYNLLYHKGKVYFIDVSQSVEHDHPQSIDFLRMDILNISTFFRR 335
>sp|Q03021|Y396_THEAC HYPOTHETICAL PROTEIN TA0396 >gi|280362|pir||S26727 hypothetical
protein 186 (rpoA2 3' region) - Thermoplasma acidophilum
>gi|809776|emb|CAA48285.1| (X68198) ORF186 [Thermoplasma
acidophilum] >gi|10639567|emb|CAC11539.1| (AL445064)
RIO1 protein related [Thermoplasma acidophilum]
Length = 186
Score = 115 bits (285), Expect = 6e-25
Identities = 71/179 (39%), Positives = 103/179 (56%), Gaps = 10/179 (5%)
Query: 75 IAVKIYRTYTTEFRRIWEYLAADPRIGALPKDIRKLVFVWTRREYKNLQRALKYAVRAPE 134
+AVKI++ T +F I +Y+ D R + D +V VW R+EY NL V AP+
Sbjct: 12 VAVKIFKMSTLKFMSIRKYIEGDQRFSKIRIDRNDIVPVWVRKEYTNLMALENAHVPAPK 71
Query: 135 PIAFRNNVLVMEFIGDDM-PAPRLKDVEKELEKEDFEELYDFMMGSIEKLWKRGDMVHGD 193
PI F N+LVM +IG PAP+LKDVE + E +YD ++ + +++ +VH D
Sbjct: 72 PIGFFKNILVMSYIGTKSGPAPQLKDVEID------EGIYDQVIDGMRRMY-ANRIVHAD 124
Query: 194 LSEYNLLLWHEPVIIDWSQATVKRNRMSLTLLYRDIRNVINYFKRKGIDVEDPEEKFRE 252
LSEYN+L + ID +QA + M+ L RDI NV N+F++ GI+ DP +K RE
Sbjct: 125 LSEYNMLFHRKVYFIDLAQAVDMDHPMAAEFLERDIVNVSNFFQKHGIET-DP-DKIRE 181
>gi|11425694 sudD (suppressor of bimD6, Aspergillus nidulans) homolog [Homo
sapiens]
Length = 481
Score = 114 bits (283), Expect = 1e-24
Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 20/226 (8%)
Query: 47 GIIERLYGVLSTGKEANVFAGYNSKGE-----------KIAVKIYRTYTTEFRRIWEYLA 95
G++E + G +STGKE+ VF Y E + A+K+++T EF+ +Y+
Sbjct: 210 GMLETITGCISTGKESVVFHAYGGSMEDEKEDSKVIPTECAIKVFKTTLNEFKNRDKYIK 269
Query: 96 ADPRIGALPKDI--RKLVFVWTRREYKNLQRALKYAVRAPEPIAFRNNVLVMEFIG-DDM 152
D R + RK++ +W +E NL R + + P + + ++LVM FIG D +
Sbjct: 270 DDFRFKDRFSKLNPRKIIRMWAEKEMHNLARMQRAGIPCPTVVLLKKHILVMSFIGHDQV 329
Query: 153 PAPRLKDVEKELEKEDFEELYDFMMGSIEKLWKRGDMVHGDLSEYNLLLWH--EPVIIDW 210
PAP+LK+V +L E+ +E Y + + +L+ +VH DLSEYN +LWH + +ID
Sbjct: 330 PAPKLKEV--KLNSEEMKEAYYQTLHLMRQLYHECTLVHADLSEYN-MLWHAGKVWLIDV 386
Query: 211 SQATVKRNRMSLTLLYRDIRNVINYFKRKGI-DVEDPEEKFRELAG 255
SQ+ + L L+RD RNV +F++ G+ + E F ++G
Sbjct: 387 SQSVEPTHPHGLEFLFRDCRNVSQFFQKGGVKEALSERELFNAVSG 432
>gi|4507299 sudD (suppressor of bimD6, Aspergillus nidulans) homolog; human
homolog of Aspergillus nidulans sudD gene product [Homo
sapiens] >gi|2338558|gb|AAC26080.1| (AF013591) homolog
of the Aspergillus nidulans sudD gene product [Homo
sapiens]
Length = 519
Score = 112 bits (277), Expect = 5e-24
Identities = 73/226 (32%), Positives = 120/226 (52%), Gaps = 20/226 (8%)
Query: 47 GIIERLYGVLSTGKEANVFAGYNSKGE-----------KIAVKIYRTYTTEFRRIWEYLA 95
G++E + G +STGKE+ VF Y E + A+K+++T EF+ +Y+
Sbjct: 248 GMLETITGCISTGKESVVFHAYGGSMEDEKEDSKVIPTECAIKVFKTTLNEFKNRDKYIK 307
Query: 96 ADPRIGALPKDI--RKLVFVWTRREYKNLQRALKYAVRAPEPIAFRNNVLVMEFIG-DDM 152
D R + RK+ +W +E NL R + + P + + ++LVM FIG D +
Sbjct: 308 DDFRFKDRFSKLNPRKIHRMWAEKEMHNLARMQRAGIPCPTVVLLKKHILVMSFIGHDQV 367
Query: 153 PAPRLKDVEKELEKEDFEELYDFMMGSIEKLWKRGDMVHGDLSEYNLLLWH--EPVIIDW 210
PAP+LK+V +L E+ +E Y + + +L+ +VH DLSEYN +LWH + +ID
Sbjct: 368 PAPKLKEV--KLNSEEMKEAYYQTLHLMRQLYHECTLVHADLSEYN-MLWHAGKVWLIDV 424
Query: 211 SQATVKRNRMSLTLLYRDIRNVINYFKRKGI-DVEDPEEKFRELAG 255
SQ+ + L L+RD RNV +F++ G+ + E F ++G
Sbjct: 425 SQSVEPTHPHGLEFLFRDCRNVSQFFQKGGVKEALSERELFNAVSG 470
>gb|AAF50965.1| (AE003575) CG3008 gene product [Drosophila melanogaster]
Length = 603
Score = 107 bits (264), Expect = 2e-22
Identities = 70/235 (29%), Positives = 122/235 (51%), Gaps = 30/235 (12%)
Query: 48 IIERLYGVLSTGKEANV--------FAGYNSKGEK-------------IAVKIYRTYTTE 86
I+E++ G++STGKEA + + G N G + A+KI++T E
Sbjct: 274 ILEQINGIISTGKEAVILHANSDANYTGSNEHGHQSGVLVPPQLLPRECAIKIFKTTLNE 333
Query: 87 FRRIWEYLAADPRIGAL--PKDIRKLVFVWTRREYKNLQRALKYAVRAPEPIAFRNNVLV 144
F++ Y+ D R ++ R ++ +W +E NL R + P+ + + +VLV
Sbjct: 334 FKQRDRYIKDDYRFKDRFSKQNHRVIINMWAEKEMHNLMRMQAIGLNVPDVVVLKKHVLV 393
Query: 145 MEFIGDD-MPAPRLKDVEKELEKEDFEELYDFMMGSIEKLWKRGDMVHGDLSEYNLLLWH 203
M FIGD+ AP+LKD L + Y+ ++ ++ KL+ +VH D+SEYN +LW
Sbjct: 394 MRFIGDNHNAAPKLKDA--RLSDAELSCAYEEIVAAMHKLYNEAKLVHADMSEYN-ILWF 450
Query: 204 EPV--IIDWSQATVKRNRMSLTLLYRDIRNVINYFKRKGI-DVEDPEEKFRELAG 255
E ID +Q+ ++ +L L RD N++N+F+R+G+ ++ E+ F + G
Sbjct: 451 EGKCWFIDVAQSVEPKHPSALEFLMRDCGNIVNFFERRGLPNIYTKEQLFEFITG 505
>pir||T33172 hypothetical protein M01B12.5 - Caenorhabditis elegans
>gi|3158522|gb|AAC17564.1| (AF067624) similar to S.
cerevisiae hypothetical protein RI01 (GB:X96739)
[Caenorhabditis elegans]
Length = 548
Score = 102 bits (253), Expect = 3e-21
Identities = 79/275 (28%), Positives = 124/275 (44%), Gaps = 53/275 (19%)
Query: 17 KREKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGKEANVFAGYNSKGEKIA 76
KR KD +V D T + +RG + + G +STGKEANV+ + + +A
Sbjct: 109 KRVKDRADRATVEQVLDPRTRLVLFRLLQRGTLLNIDGCISTGKEANVYHATGTDND-LA 167
Query: 77 VKIYRTYTTEFRRIWEYLAADPRI--GALPKDIRKLVFVWTRREYKNLQRALKYAVRAPE 134
+KIY+T F+ Y+ + R G + RK+V VW +E +NL R + + P+
Sbjct: 168 IKIYKTSILTFKDRERYVTGEFRYRHGYCKSNPRKMVAVWAEKEMRNLARMHEVGLPVPK 227
Query: 135 PIAFRNNVLVMEFIG-DDMPAPRLKDVEKELE---------------------------- 165
P + +VLVM+F+G D PAP LK+ E
Sbjct: 228 PHLLKGHVLVMDFLGKDGWPAPLLKNANLSQEVAISKFYQFFVFFFDEKNKNLQNFYLKK 287
Query: 166 ------------KEDFEELYDFMMGSIEKLWKRGDMVHGDLSEYNLL-----LWHEPVII 208
K+D E +Y ++ + +L++ +VH DLSE+N+L LW II
Sbjct: 288 KNVILSKTSKKPKKDAEPMYVGLVRDMRRLYRECKLVHADLSEFNMLVHDGKLW----II 343
Query: 209 DWSQATVKRNRMSLTLLYRDIRNVINYFKRKGIDV 243
D SQ+ + + +L L D NV +F+ G+ V
Sbjct: 344 DVSQSVEQDHPHALEFLRMDCNNVNKFFRELGVPV 378
>pir||H64433 hypothetical protein MJ1073 - Methanococcus jannaschii
>gi|1499920|gb|AAB99073.1| (U67550) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 270
Score = 92.1 bits (225), Expect = 6e-18
Identities = 69/212 (32%), Positives = 115/212 (53%), Gaps = 16/212 (7%)
Query: 40 ISYFYRRGIIERLYGVLSTGKEANVFAGYNSKGEKIAVKIY---RTYTTEFRRIWEYLAA 96
I+ F ++GI++ + L GKE +V+ S G + +K + RT T +R YLA
Sbjct: 55 INAFVKKGILKAIGNKLGVGKEGDVYTVLLSDGREAVLKFHKHGRTCFTRGKRYRGYLAD 114
Query: 97 DPRIGALPKDIRKLVFVWTRREYKNLQRALKYAVRAPEPIAFRNNVLVM-EFIGDDMPAP 155
I L + +L RE++ L V+ PEPI + + ++M + +G+++
Sbjct: 115 KHHISWLY--VSRLT---AEREFEILNELFPI-VKVPEPIEWNRHAIIMGKVVGEEL--- 165
Query: 156 RLKDVEKELEKEDFEELYDFMMGSIEKLWKRGDMVHGDLSEYNLLLWHEP--VIIDWSQA 213
+ D+ + + KE+ ++L+ ++ ++K ++ G +HGDLSE+N+LL VIIDW QA
Sbjct: 166 KRLDLSEFMSKEEIKDLFWKIIEEVKKAYEIG-YIHGDLSEFNILLDENGDFVIIDWPQA 224
Query: 214 TVKRNRMSLTLLYRDIRNVINYFKRKGIDVED 245
K + + L RDI NVI YFK+ ID ED
Sbjct: 225 VPKYHPDAEFYLKRDIWNVIRYFKKYKIDKED 256
>pir||C71164 hypothetical protein PH0512 - Pyrococcus horikoshii
>gi|3256917|dbj|BAA29600.1| (AP000002) 313aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 313
Score = 88.5 bits (216), Expect = 7e-17
Identities = 75/228 (32%), Positives = 124/228 (53%), Gaps = 30/228 (13%)
Query: 40 ISYFYRRGIIERLYGV-LSTGKEANVFAGYNSKGEKIAVKIYRTYTTEFRRIWEYLAADP 98
I F ++GIIE + + GK+A+V+ GEK+AVK F RI E +A
Sbjct: 90 IRSFAKKGIIEAISTTQIGVGKDADVYVALTPSGEKVAVK--------FNRIGERTSA-- 139
Query: 99 RIGALPKDI------RKLVFVW---TRREYKNLQRALKYAVRAPEPIAFRNNVLVMEFIG 149
R D+ + ++V ++E++ L +A + P+PIA+ + +VME+I
Sbjct: 140 RKAGYHSDVFADKHHKSWLYVSRLIAKKEHEALVLLSPFA-KVPKPIAWNRHAIVMEYIS 198
Query: 150 DDMPAPRLKDVEKELEKEDFEELYDFMMGSIEKLWKRGDMVHGDLSEYNLLLW--HEPVI 207
+ L+D +L +E+ EE+ ++ EK+ K G +VHGD+SE+N++L ++ +I
Sbjct: 199 G-VELAELRD--NDLTEEEAEEILGKILDEYEKIVKFG-IVHGDMSEFNVVLTDDNDILI 254
Query: 208 IDWSQATVKRNRMSLTLLYRDIRNVINYFKRK-GI--DVEDPEEKFRE 252
IDW+Q N SL LL RDI ++N F+R+ G+ D E+ E+F E
Sbjct: 255 IDWAQYLTCANPESLELLKRDITVLLNAFRRRWGVKRDFEEEWERFYE 302
>pir||E72539 hypothetical protein APE1602 - Aeropyrum pernix (strain K1)
>gi|5105289|dbj|BAA80602.1| (AP000062) 391aa long
hypothetical protein [Aeropyrum pernix]
Length = 391
Score = 88.2 bits (215), Expect = 1e-16
Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 14/204 (6%)
Query: 46 RGIIERLYGVLSTGKEANVFAGYNSKGEKIAVKIYRTYTTEFRRIWEY--LAADPRIGAL 103
RGI+E L + GKE +V+ + G K+ VK++R FR++ + A D R
Sbjct: 180 RGIVEVLGDKIGLGKEGDVYVAVSPAGSKLTVKLHRAGRESFRKVRRHRSYALDLR---- 235
Query: 104 PKDIRKLVFVWTRREYKNLQRALKYAVRAPEPIAFRNNVLVMEFIGDDMPAPRLKDVEKE 163
P + RE+K L R + R P P+A+ + +V ++ + L DV +
Sbjct: 236 PTSWLDVSKALAEREFKILVRLEEEGARIPSPVAWNRHAVVQRYVEGVL----LADV-RV 290
Query: 164 LEKEDFEELYDFMMGSIEKLWKRGDMVHGDLSEYNLLLWHE--PVIIDWSQATVKRNRMS 221
L+ E + ++ ++ + R +VHGDLSEYN++ E V+IDW Q + +
Sbjct: 291 LDTEAAASILRDVLETLRIAYTRVGVVHGDLSEYNVIATTEGRGVVIDWPQYVYRDEPHA 350
Query: 222 LTLLYRDIRNVINYFKRK-GIDVE 244
L LL RD+ ++ YF+R+ G+ VE
Sbjct: 351 LELLRRDVEYILKYFRRRAGLKVE 374
>pir||B75068 hypothetical protein PAB1013 - Pyrococcus abyssi (strain Orsay)
>gi|5458952|emb|CAB50439.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 313
Score = 85.8 bits (209), Expect = 5e-16
Identities = 69/225 (30%), Positives = 122/225 (53%), Gaps = 13/225 (5%)
Query: 40 ISYFYRRGIIERLYGV-LSTGKEANVFAGYNSKGEKIAVKIYRT-YTTEFRRIWEYLAAD 97
I F ++G+IE + + GK+A+V+ GEK+AVK R T R+ + + +D
Sbjct: 87 IRAFAKKGVIEAISTTQIGVGKDADVYVAITPSGEKVAVKFNRIGERTSARKAFYH--SD 144
Query: 98 PRIGALPKDIRKLVFVWTRREYKNLQRALKYAVRAPEPIAFRNNVLVMEFIGDDMPAPRL 157
K + + ++E++ L +A + P+PIA+ + +VMEFI + + L
Sbjct: 145 VFADKHHKSWLYVSRLIAKKEHEALVLLSPFA-KVPKPIAWNRHAIVMEFI-NGVELAEL 202
Query: 158 KDVEKELEKEDFEELYDFMMGSIEKLWKRGDMVHGDLSEYNLLLWHEP--VIIDWSQATV 215
+D + L +E+ +E+ ++ EK+ K G +VHGD+SE+N++L + +IIDW+Q
Sbjct: 203 RDTD--LTREEADEILGKVLDEYEKIVKFG-IVHGDMSEFNVVLTEDNDILIIDWAQYQS 259
Query: 216 KRNRMSLTLLYRDIRNVINYFKRKGIDVEDPEEKFRELAGDELWM 260
N SL LL RDI ++N F+R+ + EE+++ E W+
Sbjct: 260 CANPESLELLKRDITVLLNAFRRRWGVKRNFEEEWKRFY--EAWL 302
>gb|AAK40542.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 287
Score = 83.5 bits (203), Expect = 2e-15
Identities = 65/251 (25%), Positives = 120/251 (46%), Gaps = 23/251 (9%)
Query: 2 ERLDREIAEVLGLTDKREKDSELFKV------FSEVFDKTTVETISYFYRRGIIERLYGV 55
+RLD + E L ++ K+ + +L F F + I Y I+ RL +
Sbjct: 40 KRLDIKDDEELKISLKKLSELKLISKKPTDLSFKLTFSGLDILGIKLLYVNKILNRLAEI 99
Query: 56 LSTGKEANVFAGYNSKGEKIAVKIYRTYTTEFRRIWEYLAADPRIGALPKDIRKLVFVWT 115
+ GKE+ V+ GY+ KI VK +R T ++++ ++ + + L +
Sbjct: 100 IGIGKESLVYYGYDFNDNKIIVKFHRVGTDSYKKV-KFRKSQEKKSWLSITVEN-----A 153
Query: 116 RREYKNLQRALKYAVRAPEPIAFRNNVLVMEFIGDDMPAPRLKDVEKELEKEDFEELYDF 175
+RE++ L P+P+ N + ME+I D + ++ +L + +E+ +
Sbjct: 154 KREFEALTCLSNEGGYVPKPLGVEYNAVAMEYI-DGIELYKIPVTNMDL---NLDEILEK 209
Query: 176 MMGSIEKLWKRGDMVHGDLSEYNLLLWH--EPVIIDWSQATVKRNRMSLTLLYRDIRNVI 233
++ ++ + + HGDLS YN+L+ P +IDW QAT R L +D+ N+I
Sbjct: 210 ILQTMRIAYTICHITHGDLSPYNVLIDKNGNPYLIDWPQATKSEER-----LEKDLSNLI 264
Query: 234 NYFKRKGIDVE 244
+F++KGIDV+
Sbjct: 265 IFFRKKGIDVD 275
>gi|11500002 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450007|pir||C69553 conserved hypothetical protein
AF2426 - Archaeoglobus fulgidus
>gi|2650662|gb|AAB91236.1| (AE001107) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 282
Score = 77.3 bits (187), Expect = 2e-13
Identities = 66/231 (28%), Positives = 114/231 (48%), Gaps = 27/231 (11%)
Query: 12 LGLTDKREKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGKEANVFAGYNSK 71
L + R+KD ++ + F ++ ++ R G ++ + ++ GKE+ VF Y+ K
Sbjct: 57 LRVVQNRQKD---YEGSTFTFIGLSLYSLHRLVRSGKVDAIGKLMGEGKESAVFNCYSEK 113
Query: 72 GEKIAVKIYRTYTTEFRRIWEYLAADPRIGALPKDIRKLVFVWTRREYKNLQRALKYAVR 131
+ VK ++ T F+++ E G L + L R E++ LQ+ AV
Sbjct: 114 FGECVVKFHKVGHTSFKKVKE----KRDYGDLHFSV--LAIRSARNEFRALQKLQGLAV- 166
Query: 132 APEPIAFRNNVLVMEFIGDDMPAPRLKDVEKELEK---EDFEELYDFMMGSIEKLWKRGD 188
P+ A+ N ++ME I KEL + E+ +E+ D ++ + K + RG
Sbjct: 167 -PKVYAWEGNAVLMELID-----------AKELYRVRVENPDEVLDMILEEVAKFYHRG- 213
Query: 189 MVHGDLSEYNLLLWHEPV-IIDWSQATVKRNRMSLTLLYRDIRNVINYFKR 238
+VHGDLS+YN+L+ E + IID+ Q+ +L RD+RN+I YF R
Sbjct: 214 IVHGDLSQYNVLVSEEGIWIIDFPQSVEVGEEGWREILERDVRNIITYFSR 264
>pir||B83049 conserved hypothetical protein PA4780 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951045|gb|AAG08166.1|AE004891_8 (AE004891)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 297
Score = 74.9 bits (181), Expect = 9e-13
Identities = 66/205 (32%), Positives = 97/205 (47%), Gaps = 16/205 (7%)
Query: 47 GIIERLYGVLSTGKEANVFAGYNSKGEKIAVKIYRTYTTEFRRIWEY-----LAADPRIG 101
G+I+ + L +GKEA+V+ + A FR+ EY + +
Sbjct: 14 GLIDEVVRPLMSGKEASVYVVRCGDSLRCAKVYKEANKRSFRQAAEYQEGRKVRNSRQAR 73
Query: 102 ALPKDI----RKLVFVWTRREYKNLQRALKYAVRAPEPIAFRNNVLVMEFI--GDDMPAP 155
A+ K R+ W E L R VR P+P F + VL+ME + D AP
Sbjct: 74 AMAKGSKYGRREQEEAWQNAEVAALFRLAGAGVRVPKPYDFLDGVLLMELVADADGDAAP 133
Query: 156 RLKDVEKELEKEDFEELYDFMMGSIEKLWKRGDMVHGDLSEYNLLLWHE-PVIIDWSQAT 214
RL DV LE ++ + F++ I + G +VHGDLSE+N+LL + PVIID QA
Sbjct: 134 RLNDV--TLEPDEARRHHAFLIRQIVAMLCAG-LVHGDLSEFNVLLGPDGPVIIDLPQAV 190
Query: 215 -VKRNRMSLTLLYRDIRNVINYFKR 238
N + ++L RD+ N+ YF R
Sbjct: 191 DAAGNNHAFSMLERDVGNMAAYFGR 215
>pir||A75301 SudD-related protein - Deinococcus radiodurans (strain R1)
>gi|6460012|gb|AAF11757.1|AE002054_2 (AE002054)
SudD-related protein [Deinococcus radiodurans]
Length = 303
Score = 72.6 bits (175), Expect = 5e-12
Identities = 71/259 (27%), Positives = 110/259 (42%), Gaps = 25/259 (9%)
Query: 15 TDKREKDSELFKVFSEVFDKTTVETISYFYRRGIIERLYGVLSTGKEANVFAGYNSKGEK 74
T K + +L + E D +TI G + + L +GKEA + +G
Sbjct: 34 TRKPQGRRKLADLTGEETDDIADDTIRRLLDLGHLTEVVCELKSGKEATAYLAETVRGPA 93
Query: 75 IAVKIYRTYTT----------EFRRIWEYLAADPRIGALPKDIRKLVFVWTRREYKNLQR 124
+ +KIYR + E + + + A K + L F W EY +L +
Sbjct: 94 L-LKIYRDFAARSFKNDAIYREGQVVLDQRARRAMESRSRKGLEMLQFDWVMAEYAHLWQ 152
Query: 125 ALKYAVRAPEPIA------FRNNV--LVMEFIGD-DMPAPRLKDVEKELEKEDFEELYDF 175
+ + PEP+ + V ++M IG + PAPRL DV L E+ +
Sbjct: 153 LWQAGLSVPEPLVGPHVKTYAETVPAVLMRLIGTAESPAPRLSDVR--LTPEEARRAWQQ 210
Query: 176 MMGSIEKLWKRGDMVHGDLSEYNLLLWHEPV-IIDWSQATVKRNRMSLTLLYRDIRNVIN 234
+ + L + G HGD S YNLL W V IID+ Q T + N LL RD +++
Sbjct: 211 SVQGMADLLRLG-YAHGDYSTYNLLWWENTVTIIDFPQLTTRANPNFKELLRRDAQSLAT 269
Query: 235 YFKRKGIDVEDPEEKFREL 253
F++ G+ E E RE+
Sbjct: 270 SFRKHGLQ-ETAEGTLREV 287
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101472529
Number of Sequences: 2977
Number of extensions: 4335367
Number of successful extensions: 11457
Number of sequences better than 1.0e-10: 29
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 11365
Number of HSP's gapped (non-prelim): 31
length of query: 266
length of database: 189,106,746
effective HSP length: 54
effective length of query: 212
effective length of database: 156,788,448
effective search space: 33239150976
effective search space used: 33239150976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)