BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0406 (PAB0406) DE:Hypothetical protein
(221 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75179 hypothetical protein PAB0406 - Pyrococcus abyssi (st... 441 e-123
pir||F71034 hypothetical protein PH1566 - Pyrococcus horikoshii ... 410 e-114
pir||B69001 conserved hypothetical protein MTH1006 - Methanobact... 189 3e-47
sp|Q57885|Y443_METJA HYPOTHETICAL PROTEIN MJ0443 >gi|2128007|pir... 175 4e-43
gb|AAG20352.1| (AE005109) Vng2227c [Halobacterium sp. NRC-1] 153 1e-36
pir||C72666 probable mitochondrial-type HSP70 APE0754 - Aeropyru... 143 2e-33
emb|CAC11540.1| (AL445064) conserved hypothetical protein [Therm... 141 8e-33
gi|11499393 conserved hypothetical protein [Archaeoglobus fulgid... 134 1e-30
gb|AAK42524.1| Conserved hypothetical protein [Sulfolobus solfat... 109 2e-23
pir||F71616 RNA-binding protein (KH domain) PFB0370c - malaria p... 69 5e-11
gb|AAC47659.1| (U97520) unknown [Nosema locustae] 68 9e-11
>pir||D75179 hypothetical protein PAB0406 - Pyrococcus abyssi (strain Orsay)
>gi|5458025|emb|CAB49515.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 221
Score = 441 bits (1123), Expect = e-123
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MDEEFEKLMKKFEKVSKDGERIEEEEDEEWEEFFKQEEYVKIPKDRIAVLIGKKGQTKRE 60
MDEEFEKLMKKFEKVSKDGERIEEEEDEEWEEFFKQEEYVKIPKDRIAVLIGKKGQTKRE
Sbjct: 1 MDEEFEKLMKKFEKVSKDGERIEEEEDEEWEEFFKQEEYVKIPKDRIAVLIGKKGQTKRE 60
Query: 61 IERRTKTKITVDSETGEVWITSTKETDDPLAVWKARDIVQAIGRGFSPERAFRLLNEGEY 120
IERRTKTKITVDSETGEVWITSTKETDDPLAVWKARDIVQAIGRGFSPERAFRLLNEGEY
Sbjct: 61 IERRTKTKITVDSETGEVWITSTKETDDPLAVWKARDIVQAIGRGFSPERAFRLLNEGEY 120
Query: 121 LEIINLTDIIIGNEKNALPRIRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQI 180
LEIINLTDIIIGNEKNALPRIRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQI
Sbjct: 121 LEIINLTDIIIGNEKNALPRIRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQI 180
Query: 181 EIAKTAIEKLARGSPHGSVYRYLERRKKDLELEGNMYYENL 221
EIAKTAIEKLARGSPHGSVYRYLERRKKDLELEGNMYYENL
Sbjct: 181 EIAKTAIEKLARGSPHGSVYRYLERRKKDLELEGNMYYENL 221
>pir||F71034 hypothetical protein PH1566 - Pyrococcus horikoshii
>gi|3257995|dbj|BAA30678.1| (AP000006) 219aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 219
Score = 410 bits (1042), Expect = e-114
Identities = 205/221 (92%), Positives = 214/221 (96%), Gaps = 2/221 (0%)
Query: 1 MDEEFEKLMKKFEKVSKDGERIEEEEDEEWEEFFKQEEYVKIPKDRIAVLIGKKGQTKRE 60
M EEFEKLMKKFE V+KDGE +E+E+ EWEEFFKQEEYVKIPKDRIAVLIGKKGQTK+E
Sbjct: 1 MGEEFEKLMKKFENVNKDGEIVEDED--EWEEFFKQEEYVKIPKDRIAVLIGKKGQTKKE 58
Query: 61 IERRTKTKITVDSETGEVWITSTKETDDPLAVWKARDIVQAIGRGFSPERAFRLLNEGEY 120
IE+RTKTKIT+DSETGEVWITSTKET+DPLAVWKARDIV AIGRGFSPERAFRLLNEGEY
Sbjct: 59 IEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEY 118
Query: 121 LEIINLTDIIIGNEKNALPRIRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQI 180
LEIINLTDIIIGNEKNALPR+RGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQI
Sbjct: 119 LEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQI 178
Query: 181 EIAKTAIEKLARGSPHGSVYRYLERRKKDLELEGNMYYENL 221
EIAKTAIEKLARGSPHGSVYRYLERRKKDLELEG MYYENL
Sbjct: 179 EIAKTAIEKLARGSPHGSVYRYLERRKKDLELEGAMYYENL 219
>pir||B69001 conserved hypothetical protein MTH1006 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622107|gb|AAB85502.1| (AE000873) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 191
Score = 189 bits (474), Expect = 3e-47
Identities = 90/177 (50%), Positives = 133/177 (74%), Gaps = 1/177 (0%)
Query: 37 EEYVKIPKDRIAVLIGKKGQTKREIERRTKTKITVDSETGEVWITSTKETDDPLAVWKAR 96
EEY+KIP++R+ VLIGK G K +IER T+T++ +DSETG V + E +DPL+ WKAR
Sbjct: 7 EEYIKIPRERVGVLIGKNGAVKAKIERLTQTELEIDSETGAVTLIPQDELEDPLSPWKAR 66
Query: 97 DIVQAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEKNALPRIRGRIIGRKGRTRQII 156
IV+AIGRGF+PE A RLL++ LE+I +TD +G K A+ R +GR+IGR+G TR+II
Sbjct: 67 HIVRAIGRGFNPEVALRLLDDDVALEVIKITD-YVGKSKKAIARQKGRVIGREGITRRII 125
Query: 157 EEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSPHGSVYRYLERRKKDLELE 213
+M+G +SVYGKTV++IG ++ +A+ AIE + G+ H SVY +LE++K++L+++
Sbjct: 126 HDMTGVDISVYGKTVSLIGEFEKLAVAREAIEMILNGARHKSVYAFLEKKKQELKMK 182
>sp|Q57885|Y443_METJA HYPOTHETICAL PROTEIN MJ0443 >gi|2128007|pir||C64355 conserved
hypothetical protein MJ0443 - Methanococcus jannaschii
>gi|1591147|gb|AAB98430.1| (U67495) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 227
Score = 175 bits (439), Expect = 4e-43
Identities = 85/177 (48%), Positives = 128/177 (72%), Gaps = 3/177 (1%)
Query: 35 KQEEYVKIPKDRIAVLIGKKGQTKREIERRTKTKITVDSETGEVWITSTKETDDPLAVWK 94
K E +KIPKDR+ VLIGKKG K+ IE+ K+ +D++ G V I T + DPLAVWK
Sbjct: 14 KSIEILKIPKDRVGVLIGKKGNVKKTIEKELGVKLEIDAD-GTVTIYGTDKQKDPLAVWK 72
Query: 95 ARDIVQAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEKNALPRIRGRIIGRKGRTRQ 154
ARDIV+AIGRGF+PE A +L+++ LE+I++ D + N++ R++GR+IG++G++R+
Sbjct: 73 ARDIVRAIGRGFNPEIALKLVSDEYVLEVIDIEDY--ASSDNSIRRLKGRVIGKEGKSRR 130
Query: 155 IIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSPHGSVYRYLERRKKDLE 211
IE ++GA+VSVYG TVAI+G ++IAK A+E L RG+ H Y++LER ++ ++
Sbjct: 131 YIESLTGANVSVYGNTVAIVGEHEPVQIAKEAVEMLLRGASHAKTYKFLERERQKIK 187
>gb|AAG20352.1| (AE005109) Vng2227c [Halobacterium sp. NRC-1]
Length = 183
Score = 153 bits (383), Expect = 1e-36
Identities = 84/184 (45%), Positives = 121/184 (65%), Gaps = 7/184 (3%)
Query: 38 EYVKIPKDRIAVLIGKKGQTKREIERRTKTKITVDSETGEVWITSTKETDDPLAVWKARD 97
++VKIP DRI VLIG G+T R IE + I VDS+ G V I + T DP+ +A +
Sbjct: 2 KHVKIPTDRIGVLIGDGGETLRRIEAAAEVDIDVDSQDGAVAI---ERTGDPVRGMQAPE 58
Query: 98 IVQAIGRGFSPERAFRLLNEGEYLEIINLTDI-IIGNEKNALPRIRGRIIGRKGRTRQII 156
IVQAIGRGF P+ A LL++ + + + DI N L R +GR+IG GRTR+++
Sbjct: 59 IVQAIGRGFKPDEALTLLDDD--MRMFDTIDIGRAARNDNDLRRKKGRLIGENGRTRELM 116
Query: 157 EEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSPHGSVYRYLER-RKKDLELEGN 215
EE++GASV +YG T +IG P ++++A++A E L G+PHGSVY +LER R ++L+ +G
Sbjct: 117 EELTGASVVIYGSTFGVIGQPSEVDVARSAAEMLLDGAPHGSVYSFLERKRSEELKQQGM 176
Query: 216 MYYE 219
Y+E
Sbjct: 177 EYHE 180
>pir||C72666 probable mitochondrial-type HSP70 APE0754 - Aeropyrum pernix
(strain K1) >gi|5104416|dbj|BAA79731.1| (AP000060) 190aa
long hypothetical mitochondrial-type HSP70 [Aeropyrum
pernix]
Length = 190
Score = 143 bits (356), Expect = 2e-33
Identities = 78/177 (44%), Positives = 113/177 (63%), Gaps = 1/177 (0%)
Query: 35 KQEEYVKIPKDRIAVLIGKKGQTKREIERRTKTKITVDSETGEVWITSTKETDDPLAVWK 94
K YVK+ +R+ +IG +G+ K EI RRT T ITVD+E V + E P+ + K
Sbjct: 2 KPRIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMK 61
Query: 95 ARDIVQAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEKNALPRIRGRIIGRKGRTRQ 154
A ++V+AI GF PE+AFRLL E + L +++L ++G+ +N L RI+GRIIG GR R+
Sbjct: 62 AAEVVKAISLGFPPEKAFRLLEEDQILVVVDLKQ-VVGDSQNHLKRIKGRIIGEGGRARR 120
Query: 155 IIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSPHGSVYRYLERRKKDLE 211
IEEM+ ++V VAIIG+ + AK AIE LA G H +VYR+LER ++++
Sbjct: 121 TIEEMTDTYINVGEYEVAIIGDYERAMAAKQAIEMLAEGRMHSTVYRHLERIMREIK 177
>emb|CAC11540.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 189
Score = 141 bits (351), Expect = 8e-33
Identities = 72/171 (42%), Positives = 111/171 (64%), Gaps = 4/171 (2%)
Query: 40 VKIPKDRIAVLIGKKGQTKREIERRTKTKITVDSETGEVWITSTKETDDPLAVWKARDIV 99
V++PKDRI+++IGK G TK+ IE + K+T+DS GEV S + D + A+ +V
Sbjct: 13 VRVPKDRISIVIGKDGSTKKRIEENGEVKLTIDSNEGEV---SIDQMGDAIKSNTAKSVV 69
Query: 100 QAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEKNALPRIRGRIIGRKGRTRQIIEEM 159
QAIGRGF+P++A L +G L II+L + + +I+ R+IG G+TR IIEE+
Sbjct: 70 QAIGRGFNPDKAMLLFEDGMQLVIISLREFAKPGSSR-IAQIKARVIGTGGKTRTIIEEL 128
Query: 160 SGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSPHGSVYRYLERRKKDL 210
+G+ +SVYG TV+IIG+ + + A+ AI + G H +VY +LER+ ++L
Sbjct: 129 TGSFISVYGDTVSIIGDYLAVTYAEEAINMIINGKKHRTVYEFLERKAREL 179
>gi|11499393 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450692|pir||D69475 conserved hypothetical protein
AF1805 - Archaeoglobus fulgidus
>gi|2648741|gb|AAB89444.1| (AE000978) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 181
Score = 134 bits (333), Expect = 1e-30
Identities = 75/173 (43%), Positives = 114/173 (65%), Gaps = 8/173 (4%)
Query: 40 VKIPKDRIAVLIGKKGQTKREIERRTKTKITVDSETGEVWITSTKETDDPLAVWKARDIV 99
++IP+DR+ VLIGK G+ K+ IE +T K+TV + V I E +D L +ARD+V
Sbjct: 9 LEIPEDRVGVLIGKDGEIKKLIEEKTGCKLTVLGKHNVVKI----ECEDALGFMRARDVV 64
Query: 100 QAIGRGFSPERAFRLL-NEGEYLEIINLTDIIIGNEKNALPRIRGRIIGRKGRTRQIIEE 158
AI GFSP+ A +LL +E LE+INL+D + NAL RI+GRIIG++G+ R+ IE+
Sbjct: 65 SAISHGFSPDVALKLLYDENLVLEVINLSDFL---SDNALRRIKGRIIGKEGKMRKQIED 121
Query: 159 MSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSPHGSVYRYLERRKKDLE 211
M ++S+ K VAIIG+P + A+ AI L G+ +V +++ER+++DL+
Sbjct: 122 MLNVNISISDKHVAIIGDPENVAAAREAIMMLVEGAHTSTVIKFMERKRRDLK 174
>gb|AAK42524.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 189
Score = 109 bits (271), Expect = 2e-23
Identities = 58/151 (38%), Positives = 94/151 (61%), Gaps = 3/151 (1%)
Query: 60 EIERRTKTKITVDSETGEVWITSTKETDDPLAVWKARDIVQAIGRGFSPERAFRLLNEGE 119
++E+ T TKI D T I + KA +++AIG GF + AFRLL++
Sbjct: 22 KLEQFTDTKIIYDERTKTFNILPKGQNQ--YETLKAVSVIRAIGLGFDEQSAFRLLSDEY 79
Query: 120 YLEIINLTDIIIGNEKNALPRIRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAIIGNPIQ 179
L++I+L +IG+ + + R++GRIIG G+T++II+E +G +S+YG + ++G Q
Sbjct: 80 TLDVIDLK-ALIGSNPDTIRRVKGRIIGENGKTKRIIQEYTGVDISIYGHYIGVLGPYDQ 138
Query: 180 IEIAKTAIEKLARGSPHGSVYRYLERRKKDL 210
++IAK AIE L G H SVY++L++ +KDL
Sbjct: 139 VQIAKKAIELLIDGKEHSSVYKFLDKAEKDL 169
>pir||F71616 RNA-binding protein (KH domain) PFB0370c - malaria parasite
(Plasmodium falciparum) >gi|3845166|gb|AAC71863.1|
(AE001390) RNA-binding protein (KH domain) [Plasmodium
falciparum]
Length = 300
Score = 68.7 bits (165), Expect = 5e-11
Identities = 49/194 (25%), Positives = 93/194 (47%), Gaps = 11/194 (5%)
Query: 2 DEEFEKLMKKFEKVSK------DGERIEEEEDEEWEEFFKQEEYVKI--PKDRIAVLIGK 53
+EE K KK+ K D ++E+ E+ + F +E K+ PK R L
Sbjct: 5 EEETVKKKKKYRKDKPWDNENIDHWKVEKFTQEDNKHHFLEESSFKVLFPKYREKYLQQF 64
Query: 54 KGQTKREIERRTKTKITVDSETGEVWITSTKETDDPLAVWKARDIVQAIGRGFSPERAFR 113
K + + K +D G + + +TK+T DP + K+RD++ + R A R
Sbjct: 65 SSDIKNVLNKHF-IKFEIDLIEGYMCVKTTKKTFDPYIIIKSRDMISLLSRSVPFVHAKR 123
Query: 114 LLNEGEYLEIINLTDIIIGNEKNALPRIRGRIIGRKGRTRQIIEEMSGASVSVYGKTVAI 173
+L + Y +II ++ + KN + R R++G T + +E ++ + ++GKTV++
Sbjct: 124 VLEDETYCDIIKISGYV--RNKNKFIKRRQRLLGSNATTLKALEILTNCYICIHGKTVSV 181
Query: 174 IGNPIQIEIAKTAI 187
IG+ +++ + I
Sbjct: 182 IGHFKSLKVVRRII 195
>gb|AAC47659.1| (U97520) unknown [Nosema locustae]
Length = 221
Score = 67.9 bits (163), Expect = 9e-11
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 41 KIPKDRIAVL-----IGKKGQTKRE-------IERRTKTKITVDSETGEVWITSTKETDD 88
K P D + L + K G KR+ + K +I ++ +T V + + ET++
Sbjct: 26 KNPMDTVQTLSVDVPVHKIGAIKRDWFKIYTPVVELCKLQIRMNLKTRRVDLRTCSETEN 85
Query: 89 PLAVWKARDIVQAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEKNALPRIRGRIIGR 148
+ +A +V+A+ GFS E AF +L E YL + ++ + + + L R GRIIGR
Sbjct: 86 STFLERAHVLVKAVLIGFSVEDAFFVLKEDAYLYSFEVYEVKL-LKGDHLSRAIGRIIGR 144
Query: 149 KGRTRQIIEEMSGASVSVYGKTVAIIGNPIQIEIAKTAIEKLARGSPHGSVYRYL 203
G T++ IE S ++V V I+G I++AK AI +L GS ++ L
Sbjct: 145 NGVTKRAIETTSKTKIAVVDTKVHILGGSDNIDVAKDAICRLIMGSEPSKIHNRL 199
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.314 0.136 0.375
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84005779
Number of Sequences: 2977
Number of extensions: 3647150
Number of successful extensions: 23030
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22992
Number of HSP's gapped (non-prelim): 16
length of query: 221
length of database: 189,106,746
effective HSP length: 58
effective length of query: 163
effective length of database: 154,394,500
effective search space: 25166303500
effective search space used: 25166303500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 163 (67.9 bits)