BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0411 (PAB0411) DE:Hypothetical protein
         (194 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75180 hypothetical protein PAB0411 - Pyrococcus abyssi (st...   381  e-105
pir||G71033 hypothetical protein PH1559 - Pyrococcus horikoshii ...   211  4e-54

>pir||A75180 hypothetical protein PAB0411 - Pyrococcus abyssi (strain Orsay)
           >gi|5458030|emb|CAB49520.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 194
           
 Score =  381 bits (969), Expect = e-105
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MKDELVIEVSIFIVFLGFLTALYYKRLDHIYRTSVALLGLSIPLWLPRVYQPKGILRKIL 60
           MKDELVIEVSIFIVFLGFLTALYYKRLDHIYRTSVALLGLSIPLWLPRVYQPKGILRKIL
Sbjct: 1   MKDELVIEVSIFIVFLGFLTALYYKRLDHIYRTSVALLGLSIPLWLPRVYQPKGILRKIL 60

Query: 61  SPVYDLRIMVVLSIFIAIHVSLVNVPFTTIDLFHKEWRDADMISHFLGGLTLWLMIFRVL 120
           SPVYDLRIMVVLSIFIAIHVSLVNVPFTTIDLFHKEWRDADMISHFLGGLTLWLMIFRVL
Sbjct: 61  SPVYDLRIMVVLSIFIAIHVSLVNVPFTTIDLFHKEWRDADMISHFLGGLTLWLMIFRVL 120

Query: 121 KEFELSPRDSLLYSLLAFYILAIGWEVAEKLSEGEISFIAESVQNKVRDVILDSLGMLVG 180
           KEFELSPRDSLLYSLLAFYILAIGWEVAEKLSEGEISFIAESVQNKVRDVILDSLGMLVG
Sbjct: 121 KEFELSPRDSLLYSLLAFYILAIGWEVAEKLSEGEISFIAESVQNKVRDVILDSLGMLVG 180

Query: 181 IIMEKKGITSSRQS 194
           IIMEKKGITSSRQS
Sbjct: 181 IIMEKKGITSSRQS 194


>pir||G71033 hypothetical protein PH1559 - Pyrococcus horikoshii
           >gi|3257988|dbj|BAA30671.1| (AP000006) 139aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 139
           
 Score =  211 bits (532), Expect = 4e-54
 Identities = 98/139 (70%), Positives = 124/139 (88%)

Query: 56  LRKILSPVYDLRIMVVLSIFIAIHVSLVNVPFTTIDLFHKEWRDADMISHFLGGLTLWLM 115
           +RK+LSP+YD R+M+V SIFIA+HVSLVNVPFTT+DLFHKEWRDAD+ISHFLGG+T+W++
Sbjct: 1   MRKVLSPIYDDRVMIVFSIFIAVHVSLVNVPFTTVDLFHKEWRDADVISHFLGGMTIWMI 60

Query: 116 IFRVLKEFELSPRDSLLYSLLAFYILAIGWEVAEKLSEGEISFIAESVQNKVRDVILDSL 175
           I  VL+EF+L+ R  + YS+L FY LAIGWE+ EKLSE +ISFIAE++QNK+RDVI DSL
Sbjct: 61  IASVLREFKLNWRKLIFYSILLFYTLAIGWEILEKLSESQISFIAETLQNKIRDVISDSL 120

Query: 176 GMLVGIIMEKKGITSSRQS 194
           GML+GII+EK+ ITS +QS
Sbjct: 121 GMLLGIIIEKERITSYQQS 139


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.329    0.145    0.424 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64361461
Number of Sequences: 2977
Number of extensions: 2426405
Number of successful extensions: 7323
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7321
Number of HSP's gapped (non-prelim): 2
length of query: 194
length of database: 189,106,746
effective HSP length: 51
effective length of query: 143
effective length of database: 158,583,909
effective search space: 22677498987
effective search space used: 22677498987
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 163 (67.9 bits)