BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0413 568719 569159 147 !not a gene!
         (147 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71033 hypothetical protein PH1556 - Pyrococcus horikoshii ...   202  1e-51

>pir||D71033 hypothetical protein PH1556 - Pyrococcus horikoshii
           >gi|3257985|dbj|BAA30668.1| (AP000006) 159aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 159
           
 Score =  202 bits (509), Expect = 1e-51
 Identities = 112/146 (76%), Positives = 119/146 (80%)

Query: 1   MLTLFTVSSSLRSFSSSVRCLTFSSISTSLGLTFILLLTKSSTGFISASSIFSFFVSDAD 60
           MLTLFT  SS R FSSS R L FSSISTSLGL FILLLTKSSTGFISAS IFSF VSDA 
Sbjct: 1   MLTLFTALSSFRRFSSSFRWLIFSSISTSLGLIFILLLTKSSTGFISASLIFSFLVSDAT 60

Query: 61  LASLYASFMASSSLLRSLVEEKPQAPLARTLIATPLLSFSVKLVNTPSLRVKVVLFRSSY 120
            ASLYASFMASS+L  SLV+EKPQAPL RTL+ATPL SFSVKL NTPS R+  VLF SSY
Sbjct: 61  FASLYASFMASSTLSNSLVDEKPQAPLTRTLMATPLFSFSVKLTNTPSFRLSAVLFMSSY 120

Query: 121 LSSMYSALMFSSAHFKAFSKLSMFIT 146
           LSSMYSAL+FSSA   AFS+ S+  T
Sbjct: 121 LSSMYSALIFSSAQRSAFSRASIGTT 146


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.130    0.341 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37935710
Number of Sequences: 2977
Number of extensions: 1187130
Number of successful extensions: 4929
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4928
Number of HSP's gapped (non-prelim): 1
length of query: 147
length of database: 189,106,746
effective HSP length: 62
effective length of query: 85
effective length of database: 152,000,552
effective search space: 12920046920
effective search space used: 12920046920
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 161 (67.1 bits)