BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0414 (PAB0414) DE:Hypothetical protein
(389 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75180 hypothetical protein PAB0414 - Pyrococcus abyssi (st... 796 0.0
pir||G83636 conserved hypothetical protein PA0069 [imported] - P... 92 1e-17
pir||D72689 hypothetical protein APE0932 - Aeropyrum pernix (str... 84 2e-15
gi|11498507 conserved hypothetical protein [Archaeoglobus fulgid... 71 2e-11
pir||A75112 hypothetical protein PAB0476 - Pyrococcus abyssi (st... 69 9e-11
>pir||D75180 hypothetical protein PAB0414 - Pyrococcus abyssi (strain Orsay)
>gi|5458033|emb|CAB49523.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 389
Score = 796 bits (2033), Expect = 0.0
Identities = 389/389 (100%), Positives = 389/389 (100%)
Query: 1 MRNFIIGTSSHISGLCHSIVRGELFTTCSVGCIYCYARWYRGPHGKPKPIFEVFKLIKSL 60
MRNFIIGTSSHISGLCHSIVRGELFTTCSVGCIYCYARWYRGPHGKPKPIFEVFKLIKSL
Sbjct: 1 MRNFIIGTSSHISGLCHSIVRGELFTTCSVGCIYCYARWYRGPHGKPKPIFEVFKLIKSL 60
Query: 61 GEVIREGYPVIPIRFSALSDPFQPPAKITLKALKIALRNEVPVVINTKLIPSERHLKVLE 120
GEVIREGYPVIPIRFSALSDPFQPPAKITLKALKIALRNEVPVVINTKLIPSERHLKVLE
Sbjct: 61 GEVIREGYPVIPIRFSALSDPFQPPAKITLKALKIALRNEVPVVINTKLIPSERHLKVLE 120
Query: 121 DLASNNLAILQVSIPADKDYKEVKVIEPFAPSIEERFKLVEKASSLGIPVIVRVQPLIPG 180
DLASNNLAILQVSIPADKDYKEVKVIEPFAPSIEERFKLVEKASSLGIPVIVRVQPLIPG
Sbjct: 121 DLASNNLAILQVSIPADKDYKEVKVIEPFAPSIEERFKLVEKASSLGIPVIVRVQPLIPG 180
Query: 181 LGDRNVENFVERVAESGAIMVILEFLRIEKELMPLFSKLFGEENYKSWVSYLPLSQEAPL 240
LGDRNVENFVERVAESGAIMVILEFLRIEKELMPLFSKLFGEENYKSWVSYLPLSQEAPL
Sbjct: 181 LGDRNVENFVERVAESGAIMVILEFLRIEKELMPLFSKLFGEENYKSWVSYLPLSQEAPL 240
Query: 241 LQPPLEYRIRVAEIFSRESSKFGLYFSTCKEGLYHLHEPKDVDCCGFKFLGNSTRRPTLW 300
LQPPLEYRIRVAEIFSRESSKFGLYFSTCKEGLYHLHEPKDVDCCGFKFLGNSTRRPTLW
Sbjct: 241 LQPPLEYRIRVAEIFSRESSKFGLYFSTCKEGLYHLHEPKDVDCCGFKFLGNSTRRPTLW 300
Query: 301 DLFLEVYEKGKARGEDLWVRCEREGLLCRDKLKLYPPWLYKGLRMHEKRLESILKKPRLV 360
DLFLEVYEKGKARGEDLWVRCEREGLLCRDKLKLYPPWLYKGLRMHEKRLESILKKPRLV
Sbjct: 301 DLFLEVYEKGKARGEDLWVRCEREGLLCRDKLKLYPPWLYKGLRMHEKRLESILKKPRLV 360
Query: 361 EKLVPSLTHDEEEEVFYLKANSTRGSGMK 389
EKLVPSLTHDEEEEVFYLKANSTRGSGMK
Sbjct: 361 EKLVPSLTHDEEEEVFYLKANSTRGSGMK 389
>pir||G83636 conserved hypothetical protein PA0069 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9945893|gb|AAG03459.1|AE004446_7 (AE004446)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 352
Score = 91.7 bits (224), Expect = 1e-17
Identities = 64/201 (31%), Positives = 98/201 (47%), Gaps = 11/201 (5%)
Query: 28 CSVGCIYCYARWYRGPHG-KPKPIFEVFKLIKSL------GEVIREGYPVIPIRFSALSD 80
C GCIYCYAR P FE + KS E+ + GY PI A +D
Sbjct: 73 CEHGCIYCYARPSHAYWDLSPGIDFETRLIAKSNVASALEQELSKPGYRCAPINLGANTD 132
Query: 81 PFQP---PAKITLKALKIALRNEVPVVINTKLIPSERHLKVLEDLASNNLAILQVSIPAD 137
P+QP ++T + L++ LR P+ I TK R L +L +LA NL + +S+
Sbjct: 133 PYQPLERERRLTRQVLEVLLRFRHPLTIVTKGSLILRDLDLLRELAEQNLVAVMISLTTL 192
Query: 138 KDYKEVKVIEPFAPSIEERFKLVEKASSLGIPVIVRVQPLIPGLGDRNVENFVERVAESG 197
D + +++EP A + R + + S GIPV V P+IP + D +E ++ ++G
Sbjct: 193 DDELK-RILEPRAAAPSARLRAIRTLSGNGIPVGVLCSPMIPMVNDMELERLLQAARDAG 251
Query: 198 AIMVILEFLRIEKELMPLFSK 218
A LR+ +E+ PLF +
Sbjct: 252 ARSAAYMLLRLPREVGPLFEE 272
>pir||D72689 hypothetical protein APE0932 - Aeropyrum pernix (strain K1)
>gi|5104601|dbj|BAA79916.1| (AP000060) 326aa long
hypothetical protein [Aeropyrum pernix]
Length = 326
Score = 84.3 bits (205), Expect = 2e-15
Identities = 72/266 (27%), Positives = 115/266 (43%), Gaps = 37/266 (13%)
Query: 25 FTTCSVGCIYCYARWYRGPHGKPKPIFEVFKLIKSLGEVIREGYPVIPIRFSALSDPFQP 84
+T CS+GC YCYA Y G V +L + LG + P + SDP+ P
Sbjct: 41 YTGCSIGCRYCYATAYIGVKPSTPKRRLVGRLERDLGRIP----PGALVNIGTSSDPYPP 96
Query: 85 PAK---ITLKALKIALRNEVPVVINTK-LIPSERHLKVLEDLASNNLAILQVSIPADKDY 140
+ +T +AL++ ++I TK + + R L D+ S A + SI
Sbjct: 97 EEEKLGLTRRALEVLAPRGYRLLITTKGTLYAWRDL----DILSRANAAITPSITGLGGN 152
Query: 141 KEVKVIEPFAPSIEERFKLVEKASSLGIPVIVRVQPLIPGLGD--RNVENFVERVAESGA 198
++ +EP AP +ER A G+PV VRV P+IP + D ++ V R+AE+G
Sbjct: 153 SLLRAVEPGAPGQDERIAAAAAAVRSGVPVGVRVDPVIPYVNDDPHELKELVGRLAEAGV 212
Query: 199 IMVILEFLRIEKELMPLFSKLFGEEN------------YKSWVSYLPLSQEAPLLQPPLE 246
++ + + + + G E Y YLP LL+P +E
Sbjct: 213 RFIVTSTYKARPDNLSRMRRALGAEGERLYRLYRERGVYMHGYIYLPEEVRRRLLKPVIE 272
Query: 247 YRIRVAEIFSRESSKFGLYFSTCKEG 272
E+++ GL ++TC+EG
Sbjct: 273 -----------EAARLGLEYATCREG 287
>gi|11498507 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448961|pir||F69362 conserved hypothetical protein
AF0902 - Archaeoglobus fulgidus
>gi|2649696|gb|AAB90337.1| (AE001041) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 270
Score = 71.0 bits (171), Expect = 2e-11
Identities = 63/255 (24%), Positives = 113/255 (43%), Gaps = 35/255 (13%)
Query: 25 FTTCSVGCIYCYARWYRGPHGKPKPIF----EVFKLIKSLGEVIREGYPVIPIRFSALSD 80
+T C+ GC+YCYA + P F E L ++L ++E I S SD
Sbjct: 26 YTGCAHGCLYCYATYI--------PSFFKLREKRNLFRNLERDLQELPANALISMSNSSD 77
Query: 81 PFQPPAK---ITLKALKIALRNEVPVVINTKLIPSERHLKVLEDLASNNLAILQVSIPAD 137
P+ P K IT K L+I +V V++ TK R L++L ++ S + ++I
Sbjct: 78 PYPPVEKAREITRKCLEIMKDYDVRVMVVTKSDIVVRDLRLLSEMRS----AVSITITGL 133
Query: 138 KDYKEVKVIEPFAPSIEERFKLVEKASSLGIPVIVRVQPLIPGLGDRNVENFVERVAESG 197
++ EP AP E+R + ++ GIP ++R+ P+IPG+ D ++ + + +
Sbjct: 134 DEF------EPNAPPTEKRIEALKAVKDAGIPAVLRLDPVIPGVNDSKLDIIEKAMPDH- 186
Query: 198 AIMVILEFLRIEKELMPLFSKLFGEENYKSWVSYLPLSQEAPLLQPPLEYRIRVAEIFSR 257
V+ L+++ + + +K W+ + ++ P E R RV
Sbjct: 187 ---VVTSTLKLKADSLARMAKKL------PWLKRIEFERKGAYRYFPEEVRRRVLFKIKS 237
Query: 258 ESSKFGLYFSTCKEG 272
+ G+ C+EG
Sbjct: 238 FCEEIGVGVGFCREG 252
>pir||A75112 hypothetical protein PAB0476 - Pyrococcus abyssi (strain Orsay)
>gi|5458121|emb|CAB49610.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 277
Score = 69.1 bits (166), Expect = 9e-11
Identities = 66/254 (25%), Positives = 111/254 (42%), Gaps = 17/254 (6%)
Query: 25 FTTCSVGCIYCYARWYRGPHGKPKPIFEVFKLIKSLGEVIREGYPVIPIRFSALSDPFQP 84
+T C C+YCY Y K + L+ L +R+ I S SDP+
Sbjct: 25 YTGCDHACVYCYITGYIP---KAFKVRVKSNLLPQLERELRKFNKNFIIAMSYSSDPYPT 81
Query: 85 PAK---ITLKALKIALRNEVPVVINTKLIPSERHLKVLEDL-ASNNLAILQVSIPADKDY 140
+ IT K L++ R V ++ TK ER + VL+DL + + + V D
Sbjct: 82 IERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVLKDLRCAVGITVTTV------DE 135
Query: 141 KEVKVIEPFAPSIEERFKLVEKASSLGIPVIVRVQPLIPGLGDRNVENFVERVAESGAIM 200
++ K++EP AP ++R + ++KA GIPV R+ P+IP + E V+ A S
Sbjct: 136 EKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIPFYTWEDFEETVD--ALSFVSH 193
Query: 201 VILEFLRIEKELMPLFSKLFGEENYKSWVSYLPLSQEAPLLQPPLEYRIRVAEIFSRESS 260
+ + L++ ++ F E K Y + L+ + R ++ + R
Sbjct: 194 ITVSTLKLRPDIRARMRAKFPELMKKLEPLYTERMEGYTYLRK--DIRFKILDEARRIIE 251
Query: 261 KFGLYFSTCKEGLY 274
G+ F +C+EG Y
Sbjct: 252 GKGITFGSCREGYY 265
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.141 0.426
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151907781
Number of Sequences: 2977
Number of extensions: 6737954
Number of successful extensions: 15264
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15255
Number of HSP's gapped (non-prelim): 5
length of query: 389
length of database: 189,106,746
effective HSP length: 53
effective length of query: 336
effective length of database: 157,386,935
effective search space: 52882010160
effective search space used: 52882010160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)