BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0415 (PAB0415) DE:Hypothetical protein
(210 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75180 hypothetical protein PAB0415 - Pyrococcus abyssi (st... 424 e-118
pir||D71145 hypothetical protein PH0375 - Pyrococcus horikoshii ... 278 3e-74
gi|11498327 conserved hypothetical protein [Archaeoglobus fulgid... 115 6e-25
pir||E71070 hypothetical protein PH1257 - Pyrococcus horikoshii ... 89 3e-17
gb|AAG18948.1| (AE004996) Vng0391c [Halobacterium sp. NRC-1] 78 6e-14
pir||B75094 hypothetical protein PAB0759 - Pyrococcus abyssi (st... 75 9e-13
gi|11499256 conserved hypothetical protein [Archaeoglobus fulgid... 73 2e-12
gb|AAK40980.1| Conserved hypothetical protein [Sulfolobus solfat... 70 2e-11
pir||D72508 hypothetical protein APE2042 - Aeropyrum pernix (str... 70 2e-11
emb|CAB57625.1| (Y18930) hypothetical protein [Sulfolobus solfat... 70 2e-11
pir||D69156 conserved hypothetical protein MTH432 - Methanobacte... 69 3e-11
>pir||G75180 hypothetical protein PAB0415 - Pyrococcus abyssi (strain Orsay)
>gi|5458036|emb|CAB49526.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 210
Score = 424 bits (1079), Expect = e-118
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MRGIALFSGGKDGLYAVYLAEKEGIDVPYLLLLKTTIGLSPHWENRLSLRKLANSMGKAI 60
MRGIALFSGGKDGLYAVYLAEKEGIDVPYLLLLKTTIGLSPHWENRLSLRKLANSMGKAI
Sbjct: 1 MRGIALFSGGKDGLYAVYLAEKEGIDVPYLLLLKTTIGLSPHWENRLSLRKLANSMGKAI 60
Query: 61 LTFDMAEGSDSLVELLSSLSVDVLIAGDVYLEDHKSWLESLGEKAGIKVFEPLWGRDSRK 120
LTFDMAEGSDSLVELLSSLSVDVLIAGDVYLEDHKSWLESLGEKAGIKVFEPLWGRDSRK
Sbjct: 61 LTFDMAEGSDSLVELLSSLSVDVLIAGDVYLEDHKSWLESLGEKAGIKVFEPLWGRDSRK 120
Query: 121 LAEEMLKNGFKWAIIAVDKSKLPRSVIGYKFSSSRDLDRFLANYDVDPLGEYGEFHTVVL 180
LAEEMLKNGFKWAIIAVDKSKLPRSVIGYKFSSSRDLDRFLANYDVDPLGEYGEFHTVVL
Sbjct: 121 LAEEMLKNGFKWAIIAVDKSKLPRSVIGYKFSSSRDLDRFLANYDVDPLGEYGEFHTVVL 180
Query: 181 SSPLFDRDFELKIDDVLEDKTYYWAKFTLL 210
SSPLFDRDFELKIDDVLEDKTYYWAKFTLL
Sbjct: 181 SSPLFDRDFELKIDDVLEDKTYYWAKFTLL 210
>pir||D71145 hypothetical protein PH0375 - Pyrococcus horikoshii
>gi|3256766|dbj|BAA29449.1| (AP000002) 221aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 221
Score = 278 bits (704), Expect = 3e-74
Identities = 135/209 (64%), Positives = 166/209 (78%), Gaps = 1/209 (0%)
Query: 2 RGIALFSGGKDGLYAVYLAEKEGIDVPYLLLLKTTIGLSPHWENRLSLRKLANSMGKAIL 61
+G+A FSGGKDGLYA+YLAE+ GI+VPYLL+LKT+IGLSPHWEN +L+ LA M + IL
Sbjct: 3 KGVAFFSGGKDGLYALYLAEEMGIEVPYLLVLKTSIGLSPHWENLDALKTLAKVMEREIL 62
Query: 62 TFDMAEGSDSLVELLSSLSVDVLIAGDVYLEDHKSWLESLGEKAGIKVFEPLWGRDSRKL 121
TFDM GS +L E +SSL VD LIAGDVYLEDH W++SL E+A +K EPLWGR++RKL
Sbjct: 63 TFDMRRGSKALAEFISSLDVDYLIAGDVYLEDHILWVKSLAEEANVKPLEPLWGRNTRKL 122
Query: 122 AEEMLKNGFKWAIIAVDKSKLPRSVIGYKFSSSRDLDRFL-ANYDVDPLGEYGEFHTVVL 180
AEEML+ GF WAIIAVDK KL + +GY F S DL+ FL AN +VDPLGE GEFHTVVL
Sbjct: 123 AEEMLREGFNWAIIAVDKRKLGKEWLGYTFRSIEDLENFLRANPNVDPLGEVGEFHTVVL 182
Query: 181 SSPLFDRDFELKIDDVLEDKTYYWAKFTL 209
+SPLF +FELK++ + ED+ Y+W +F L
Sbjct: 183 NSPLFALNFELKVESIEEDERYWWLRFEL 211
>gi|11498327 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450315|pir||H69339 conserved hypothetical protein
AF0720 - Archaeoglobus fulgidus
>gi|2649895|gb|AAB90521.1| (AE001055) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 214
Score = 115 bits (284), Expect = 6e-25
Identities = 70/209 (33%), Positives = 115/209 (54%), Gaps = 7/209 (3%)
Query: 4 IALFSGGKDGLYAVYLAEKEGIDVPYLLLLKTTIGLSPHWENRLSLRKLANSMGKAILTF 63
IA++SGGKD A++ A KE ++V L+ + H N ++ A S+G I+
Sbjct: 9 IAMWSGGKDSCLALWRAMKE-MEVDSLVCMMQHGKARAHGINAEIVKAQAESIGIDIVVE 67
Query: 64 DMA--EGSDSLVELLSSLSVDVLIAGDVYLEDHKSWLESLGEKAGIKVFEPLWGRDSRKL 121
+ + L + L V+ + GD+YLE+H++W+E + ++G+K F PLWG + KL
Sbjct: 68 EATWEDYGRRLKGIFHRLGVERAVFGDIYLEEHRTWIERVCRESGVKPFFPLWGESTEKL 127
Query: 122 AEEMLKNGFKWAIIAVDKSKLPRSVIGYKFSSSRDLDRFLANYDVDPLGEYGEFHTVVLS 181
AEE ++ GF+ +IA K R ++G +F R + +DP GE GEFHT+V+
Sbjct: 128 AEEFIEAGFEAYVIATKKEF--RDLLGRRF--DRKFVDEVKKRGIDPCGEDGEFHTLVVD 183
Query: 182 SPLFDRDFELKIDDVLEDKTYYWAKFTLL 210
P+F++ E+K+ D E + Y+ LL
Sbjct: 184 GPIFEKRLEVKLLDAYEGERYWHLGVELL 212
>pir||E71070 hypothetical protein PH1257 - Pyrococcus horikoshii
>gi|3257676|dbj|BAA30359.1| (AP000005) 227aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 227
Score = 89.3 bits (218), Expect = 3e-17
Identities = 62/207 (29%), Positives = 100/207 (47%), Gaps = 14/207 (6%)
Query: 6 LFSGGKDGLYAVYLAEKEGIDVPYLLLL-----KTTIGLSPHWE-NRLSLRKLANSMGKA 59
L+SGGKD YA+Y A K G+ V YL+ + ++ + +P+ E L R L + K
Sbjct: 10 LYSGGKDSNYALYWALKSGLRVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKG 69
Query: 60 ILTFDMAEGSDSLVELLSSLSVDVLIAGDVYLEDHKSWLESLGEKAGIKVFEPLWGRDSR 119
+ + + L +L L VD ++AG + K +E++ + G+KV+ P W +D
Sbjct: 70 FTKGEKEKEVEDLKNVLEGLKVDGIVAGALASRYQKERIENVARELGLKVYTPAWEKDPY 129
Query: 120 KLAEEMLKNGFKWAIIAVDKSKLPRSVIG--YKFSSSRDLDRFLANYDVDPLGEYGEFHT 177
+ E++K GFK +AV L S +G + + +L + Y + GE GEF T
Sbjct: 130 QYMLEIIKLGFKVVFVAVSAYGLNESWLGRELNYKNLEELKKLSEKYGIHIAGEGGEFET 189
Query: 178 VVLSSPLFDRDFELKIDDVLEDKTYYW 204
VL P F K V++D +W
Sbjct: 190 FVLDMPFF------KAKIVIDDAEKFW 210
>gb|AAG18948.1| (AE004996) Vng0391c [Halobacterium sp. NRC-1]
Length = 240
Score = 78.4 bits (190), Expect = 6e-14
Identities = 69/219 (31%), Positives = 101/219 (45%), Gaps = 28/219 (12%)
Query: 4 IALFSGGKDGLYAVYLAEKEGIDVPYLLLLKTTIGLSPHWENRLSLRKLA---------N 54
+ LFSGGKD +A+Y A + G+DV L+ + + L +LA N
Sbjct: 7 VGLFSGGKDSSWALYRALEAGLDVGRLVTVHPESDSYMYHVPATRLAELAAESIGIPVVN 66
Query: 55 SMGKAILTFDMAEGS---DSLVELLSSLSVDV----------LIAGDVYLEDHKSWLESL 101
A T D+A+ D+ +E L DV +IAG V + S +E +
Sbjct: 67 VTPDAFETADVADAGAQGDTELEPLEDAVTDVADTLDDGLAGVIAGAVESDFQTSRMEGM 126
Query: 102 GEKAGIKVFEPLWGRDSRKLAEEMLKNGFKWAIIAVDKSKLPRSVIGYKFSSSRDLDRFL 161
++ G +++ PLW + R+LA+ ML GF+ II V L +S +G + RD L
Sbjct: 127 CDRLGCELYAPLWQQPPRELADAMLTAGFEIRIIQVAAYGLDKSWLGRRL--DRDALAAL 184
Query: 162 A----NYDVDPLGEYGEFHTVVLSSPLFDRDFELKIDDV 196
A Y V LGE GEF T+V +P DR L + V
Sbjct: 185 AALNDEYGVHMLGEGGEFETLVTDAPHMDRPIRLDYETV 223
>pir||B75094 hypothetical protein PAB0759 - Pyrococcus abyssi (strain Orsay)
>gi|5458567|emb|CAB50055.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 226
Score = 74.5 bits (180), Expect = 9e-13
Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 6 LFSGGKDGLYAVYLAEKEGIDVPYLLLL-----KTTIGLSPHWE-NRLSLRKLANSMGKA 59
L+SGGKD YA+Y A K V YL+ + ++ + +P+ E L R + + K
Sbjct: 10 LYSGGKDSNYALYWALKR-FKVRYLVSMVSENEESYMYHTPNVELTDLQARAVGIPLVKG 68
Query: 60 ILTFDMAEGSDSLVELLSSLSVDVLIAGDVYLEDHKSWLESLGEKAGIKVFEPLWGRDSR 119
+ + L ++L L ++ ++AG + + +E + ++ G+KV+ P WGR+
Sbjct: 69 FTKGEKEREVEDLKKVLEGLKIEGVVAGALASRYQRERIERIAKELGLKVYAPAWGRNPY 128
Query: 120 KLAEEMLKNGFKWAIIAVDKSKLPRSVI--GYKFSSSRDLDRFLANYDVDPLGEYGEFHT 177
+ E+++ GF+ + V L S + G + + +L + Y + GE GEF T
Sbjct: 129 EYMREIIELGFRVIFVGVSAYGLDESWLGRGLDYKALEELKKLNEMYGIHIAGEGGEFET 188
Query: 178 VVLSSPLFDR 187
VL +P F R
Sbjct: 189 FVLDAPFFRR 198
>gi|11499256 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450312|pir||A69458 conserved hypothetical protein
AF1666 - Archaeoglobus fulgidus
>gi|2648889|gb|AAB89582.1| (AE000988) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 222
Score = 73.4 bits (177), Expect = 2e-12
Identities = 58/203 (28%), Positives = 93/203 (45%), Gaps = 10/203 (4%)
Query: 1 MRGIALFSGGKDGLYAVY-LAEKEGIDVPYLLLLKTTIGLSPHWENRLSLRKLANSMG-- 57
M+ AL SGGKD + A++ +AEK + + + H N L +A S+G
Sbjct: 1 MKVAALISGGKDSILALHKVAEKHEVISLVGIFPENEDSYMFHSVNLHMLDVVAESLGLP 60
Query: 58 --KAILTFDMAEGSDSLVELLSSLSVDVLIAGDVYLEDHKSWLESLGEKAGIKVFEPLWG 115
K ++ + + D L + + D L G + K E + + G+K+ PLW
Sbjct: 61 LKKLYVSGEEEKEVDELAGQIGEVDADALCIGGIESNYQKKRFEKVCREVGMKLIAPLWK 120
Query: 116 RDSRKLAEEMLKNGFKWAIIAVDKSKLPRSVIGYKFSSS--RDLDRFLANYDVDPLGEYG 173
+ KL E+ + F+ I++V L S +G + DL R Y V GE G
Sbjct: 121 ANPEKLMYEVAEK-FEAIIVSVSAMGLDESFLGRRIDKECIEDLKRLNEKYSVHLAGEGG 179
Query: 174 EFHTVVLSSPLFDRDFELKIDDV 196
EF T+VL +PL+ F +K+D +
Sbjct: 180 EFETLVLDAPLY--RFRIKVDSI 200
>gb|AAK40980.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 222
Score = 69.9 bits (168), Expect = 2e-11
Identities = 53/221 (23%), Positives = 104/221 (46%), Gaps = 15/221 (6%)
Query: 1 MRGIALFSGGKDGLYAVYLAEKEGIDVPYLLLL--KTTIGLSPHWENRLSLRKLANSMGK 58
M+ L+SGGKD YA++ A +G +V L+ L K + N + + A +M
Sbjct: 1 MKICVLYSGGKDSTYALHWAVFKGFEVVCLITLIPKREDSWMFQYPNVIYTKYQAEAMDF 60
Query: 59 AILTFDMAEGSDSLVELLSSL-------SVDVLIAGDVYLEDHKSWLESLGEKAGIKVFE 111
++TF + D +E L D +++G + + + + + E+ G+K +
Sbjct: 61 KLITFGTSGEKDKELEDLKKALLQAKNEGADGIVSGALLSDYQRLNISIIAEELGLKTYT 120
Query: 112 PLWGRDSRKLAEEMLKNGFKWAIIAVDKSKLPRSVIGYKFSSSRDLDRFL---ANYDVDP 168
PLW + + ++K GFK+ I + P ++G K ++ D+++ + Y +P
Sbjct: 121 PLWRKSQEEYMRWLVKEGFKFIITSASAYGFPFDLVG-KEITTEDVEKIIERARRYGFNP 179
Query: 169 LGEYGEFHTVVLSSPLFDRDFELKIDDVLEDKTYYWAKFTL 209
E GE T V +PLF +L+++ L+ + Y ++ +
Sbjct: 180 AFEGGEAETFVTYAPLFKT--QLRVNGKLKRISEYECRYEI 218
>pir||D72508 hypothetical protein APE2042 - Aeropyrum pernix (strain K1)
>gi|5105740|dbj|BAA81052.1| (AP000063) 227aa long
hypothetical protein [Aeropyrum pernix]
Length = 227
Score = 69.9 bits (168), Expect = 2e-11
Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 25/210 (11%)
Query: 7 FSGGKDGLYAVYLAEKEGIDVPYLLLL--KTTIGLSPHWENRLSLRKLANSMGKAILTFD 64
+SGGKD +Y + G DV +L+ T+ ++ H R+ L + A L
Sbjct: 4 WSGGKDSSLTIYSLYRMGFDVEGVLVTVDSTSKRVTGH---RVPLEAVEAQARAAGLELH 60
Query: 65 MA--EGSDSLVELLSSLSVDVLIA-----------GDVYLEDHKSWLESLGEKAGIKVFE 111
+A G E+ S+ ++ L GDV+L D + L EKAG++
Sbjct: 61 IAWLPGDLPSEEVYRSIVLETLRELRMKGYRYIGHGDVFLWDMIEYKRRLAEKAGLEAVY 120
Query: 112 PLWGRDSRKLAEEMLKNGFKWAIIAVDKSKLPRSVIGYKFSSSRDLDRFLANY--DVDPL 169
PL G SR + E GF+ +++VD ++LP + +FS F+ N VD
Sbjct: 121 PLVGFGSRGVVEAFFTLGFEALVVSVDTARLPGWLACSRFSR-----EFVENLPSTVDVA 175
Query: 170 GEYGEFHTVVLSSPLFDRDFELKIDDVLED 199
GEYGEFHT+V ++P F + V +
Sbjct: 176 GEYGEFHTLVYNAPFFQEPLRPSVAGVYRE 205
>emb|CAB57625.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 222
Score = 69.9 bits (168), Expect = 2e-11
Identities = 53/221 (23%), Positives = 104/221 (46%), Gaps = 15/221 (6%)
Query: 1 MRGIALFSGGKDGLYAVYLAEKEGIDVPYLLLL--KTTIGLSPHWENRLSLRKLANSMGK 58
M+ L+SGGKD YA++ A +G +V L+ L K + N + + A +M
Sbjct: 1 MKICVLYSGGKDSTYALHWAVFKGFEVVCLITLIPKREDSWMFQYPNVIYTKYQAEAMDF 60
Query: 59 AILTFDMAEGSDSLVELLSSL-------SVDVLIAGDVYLEDHKSWLESLGEKAGIKVFE 111
++TF + D +E L D +++G + + + + + E+ G+K +
Sbjct: 61 KLITFGTSGEKDKELEDLKKALLQAKNEGADGIVSGALLSDYQRLNISIIAEELGLKTYT 120
Query: 112 PLWGRDSRKLAEEMLKNGFKWAIIAVDKSKLPRSVIGYKFSSSRDLDRFL---ANYDVDP 168
PLW + + ++K GFK+ I + P ++G K ++ D+++ + Y +P
Sbjct: 121 PLWRKSQEEYMRWLVKEGFKFIITSASAYGFPFDLVG-KEITTEDVEKIIERARRYGFNP 179
Query: 169 LGEYGEFHTVVLSSPLFDRDFELKIDDVLEDKTYYWAKFTL 209
E GE T V +PLF +L+++ L+ + Y ++ +
Sbjct: 180 AFEGGEAETFVTYAPLFKT--QLRVNGKLKRISEYECRYEI 218
>pir||D69156 conserved hypothetical protein MTH432 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621497|gb|AAB84938.1| (AE000827) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 226
Score = 69.5 bits (167), Expect = 3e-11
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 24/208 (11%)
Query: 1 MRGIALFSGGKDGLYAVYLAEKEGIDVPYLLLLKTTIGLSP-----HWENRLSLRKLANS 55
MR L+SGGKD A+Y A +E +V +L+ + I +P H N LA +
Sbjct: 1 MRSAVLYSGGKDSTMALYHALQES-EVEFLV---SVISDNPESHMYHVPNIHLTALLAEA 56
Query: 56 MGKAILTFDMAEGSDSLVELLSSL-------SVDVLIAGDVYLEDHKSWLESLGEKAGIK 108
+G ++ A + VE L+ V+ + +G +Y E KS ++S+ + G++
Sbjct: 57 VGIPLIESRTAGVEEEEVEDLAGTLKTLRERGVEAVYSGALYSEYQKSRIDSICRRLGLR 116
Query: 109 VFEPLWGRDSRKLAEEMLKNGFKWAIIAV-----DKSKLPRSVIGYKFSSSRDLDRFLAN 163
PLW RD EE++ GF+ + AV D+S L R V DL
Sbjct: 117 SVAPLWHRDPLDYMEEIVDLGFRVMVTAVAAEGLDESWLGRIVDRKMIDELADLSE---R 173
Query: 164 YDVDPLGEYGEFHTVVLSSPLFDRDFEL 191
Y ++P E GE ++VL P+F + E+
Sbjct: 174 YGINPAFEGGEAESLVLDGPIFKKRLEI 201
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77346358
Number of Sequences: 2977
Number of extensions: 3057673
Number of successful extensions: 7955
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7936
Number of HSP's gapped (non-prelim): 11
length of query: 210
length of database: 189,106,746
effective HSP length: 53
effective length of query: 157
effective length of database: 157,386,935
effective search space: 24709748795
effective search space used: 24709748795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)