BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0416 (PAB0416) DE:Hypothetical protein
(366 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75180 hypothetical protein PAB0416 - Pyrococcus abyssi (st... 717 0.0
pir||C71033 hypothetical protein PH1555 - Pyrococcus horikoshii ... 361 9e-99
pir||G71207 hypothetical protein PH1927 - Pyrococcus horikoshii ... 177 2e-43
pir||H75020 hypothetical protein PAB1116 - Pyrococcus abyssi (st... 162 6e-39
pir||E71164 hypothetical protein PH0514 - Pyrococcus horikoshii ... 94 2e-18
pir||F71027 hypothetical protein PH1514 - Pyrococcus horikoshii ... 78 2e-13
pir||A75068 hypothetical protein PAB1351 - Pyrococcus abyssi (st... 78 2e-13
pir||C75140 hypothetical protein PAB1746 - Pyrococcus abyssi (st... 75 1e-12
pir||G75106 hypothetical protein PAB0444 - Pyrococcus abyssi (st... 70 5e-11
>pir||H75180 hypothetical protein PAB0416 - Pyrococcus abyssi (strain Orsay)
>gi|5458037|emb|CAB49527.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 366
Score = 717 bits (1830), Expect = 0.0
Identities = 366/366 (100%), Positives = 366/366 (100%)
Query: 1 MFELINVVTRGLMWILSFYRWIRKREPLMIIITLAFWSDFLGVLTQPIVSKMLGVSPDVS 60
MFELINVVTRGLMWILSFYRWIRKREPLMIIITLAFWSDFLGVLTQPIVSKMLGVSPDVS
Sbjct: 1 MFELINVVTRGLMWILSFYRWIRKREPLMIIITLAFWSDFLGVLTQPIVSKMLGVSPDVS 60
Query: 61 NISPLMSTYALLEGIFLFLATMYTLGTIKKAWAQVTSFVVFQVGSLYIVLSTIFKADLPV 120
NISPLMSTYALLEGIFLFLATMYTLGTIKKAWAQVTSFVVFQVGSLYIVLSTIFKADLPV
Sbjct: 61 NISPLMSTYALLEGIFLFLATMYTLGTIKKAWAQVTSFVVFQVGSLYIVLSTIFKADLPV 120
Query: 121 ISAFSVLFMGISMILLGISLLKREIESRGIAALFPIGLILLGSINLTYPLLVYSKLAPYL 180
ISAFSVLFMGISMILLGISLLKREIESRGIAALFPIGLILLGSINLTYPLLVYSKLAPYL
Sbjct: 121 ISAFSVLFMGISMILLGISLLKREIESRGIAALFPIGLILLGSINLTYPLLVYSKLAPYL 180
Query: 181 YGAGAVFRVLMIIGLFKYTIFEVKPPKIQEIILKPGAFYTDNESEFESVIMKMQLSGNGV 240
YGAGAVFRVLMIIGLFKYTIFEVKPPKIQEIILKPGAFYTDNESEFESVIMKMQLSGNGV
Sbjct: 181 YGAGAVFRVLMIIGLFKYTIFEVKPPKIQEIILKPGAFYTDNESEFESVIMKMQLSGNGV 240
Query: 241 LITRKLPKMSPTFPVFWITKVTSGRIDENVTAIQPSDIGILIDLVKRHLEKGHSVVAMDA 300
LITRKLPKMSPTFPVFWITKVTSGRIDENVTAIQPSDIGILIDLVKRHLEKGHSVVAMDA
Sbjct: 241 LITRKLPKMSPTFPVFWITKVTSGRIDENVTAIQPSDIGILIDLVKRHLEKGHSVVAMDA 300
Query: 301 FEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQAYQDKQWSVIARELERLSELKA 360
FEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQAYQDKQWSVIARELERLSELKA
Sbjct: 301 FEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQAYQDKQWSVIARELERLSELKA 360
Query: 361 TEQGKS 366
TEQGKS
Sbjct: 361 TEQGKS 366
>pir||C71033 hypothetical protein PH1555 - Pyrococcus horikoshii
>gi|3257984|dbj|BAA30667.1| (AP000006) 366aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 366
Score = 361 bits (916), Expect = 9e-99
Identities = 169/362 (46%), Positives = 249/362 (68%), Gaps = 2/362 (0%)
Query: 1 MFELINVVTRGLMWILSFYRWIRKREPLMIIITLAFWSDFLGVLTQPIVSKMLGVSPDVS 60
+FE+IN+ RG++W SFY+W+R++E M+++++ FW D LG L+Q + GV P+ +
Sbjct: 4 IFEVINLGMRGIIWGFSFYKWLRRKEDFMLLLSITFWFDLLGGLSQKQLLIHFGVEPNPT 63
Query: 61 NISPLMSTYALLEGIFLFLATMYTLGTIKKAWAQVTSFVVFQVGSLYIVLSTIFKADLPV 120
++PLMST+AL EGI L +A+M G + + + G YI++ T+ A +
Sbjct: 64 ALTPLMSTFALTEGILLLVASMDVTGRARDLKIIILFIIASHFGLTYILICTLINAPTRI 123
Query: 121 ISAFSVLFMGISMILLGISLLKREIESRGIAALFPIGLILLGSINLTYPLLVYSKLAPYL 180
+ + VLF+G S+IL G LL+ EI + ++ALFP+G+ILLG I++TYP+ V +APYL
Sbjct: 124 LITYPVLFLGFSLILAGYVLLRHEISIKNVSALFPLGMILLGLIDITYPVTVNMSIAPYL 183
Query: 181 YGAGAVFRVLMIIGLFKYTIFEVKPPKI--QEIILKPGAFYTDNESEFESVIMKMQLSGN 238
Y AG VFR ++++G+FKY +FEV P++ + I + PG +Y ++ F ++ +M+ GN
Sbjct: 184 YFAGGVFRGMILVGIFKYALFEVSSPRVIGEGINILPGGYYLEDREVFHDILKRMESLGN 243
Query: 239 GVLITRKLPKMSPTFPVFWITKVTSGRIDENVTAIQPSDIGILIDLVKRHLEKGHSVVAM 298
GVLITR LPK S +FP+FW+TKV SG I +N+ AI P+D+GIL+DLV+RHLE+GH+VV +
Sbjct: 244 GVLITRHLPKDSFSFPIFWLTKVVSGPIKDNIIAISPTDLGILLDLVRRHLERGHTVVVI 303
Query: 299 DAFEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQAYQDKQWSVIARELERLSEL 358
D FEY+V+ENGFE A+KFL SLKD +K LIL T+ QAY QW +IARE E L +
Sbjct: 304 DGFEYIVIENGFETAMKFLLSLKDTAIKYRARLILVTSSQAYSQNQWKIIAREFENLKNI 363
Query: 359 KA 360
A
Sbjct: 364 LA 365
>pir||G71207 hypothetical protein PH1927 - Pyrococcus horikoshii
>gi|3258371|dbj|BAA31054.1| (AP000007) 355aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 355
Score = 177 bits (445), Expect = 2e-43
Identities = 124/360 (34%), Positives = 204/360 (56%), Gaps = 22/360 (6%)
Query: 5 INVVTRGLMWILSFYRWIRKREPLMIIITLAFWSDFLGVLTQPIVSKMLGVSPDVSN--I 62
IN+ +R + S YR ++ RE I+++ AF L V + + K LG+ ++
Sbjct: 9 INLFSRITLLGASSYRAVKTRESGWILLSFAFLLSTLDV--EEYILKPLGIQIQGNHYLF 66
Query: 63 SPLMSTYALLEGIFLFLATMYTLGTIKKAWAQV----TSFVVFQVGSLYIVLSTIFKADL 118
+ L S Y GI LFL T + L + + V ++F++F + + + ++ +F D
Sbjct: 67 TFLPSFYI---GI-LFLMTTFLLREHQISPRGVIIIGSTFIIFHIWTFAMAVN-LFNNDF 121
Query: 119 PVISAFSVLFMGISMILLGISLLKREIESRGIAALFPIGLILLGSINLTYPLLV-YSKLA 177
+I L +G S+I L +SLL+ + + I LFPIG+ +G +NLTYP+ ++
Sbjct: 122 TLIGLLPSLILGGSLIFLSVSLLEY-VNRKSIEILFPIGVGSVGLLNLTYPVTRNIHTIS 180
Query: 178 PYLYGAGAVFRVLMIIGLFKYTIFEVKPPKIQEIILKPGAFYTDNESEFESVIMKMQLSG 237
L+ A+FR++ IG K F K PK ++I KPGA++T+NE + ++I M
Sbjct: 181 DMLFLVAAIFRLIAAIGAIKMVTFVPKAPKNIKVISKPGAYWTENEEKGLNLISTM---- 236
Query: 238 NGVLITRK--LPKMSPTFPVFWITKVTSGRIDENVTAIQPSDIGILIDLVKRHLEKGHSV 295
N V+ITRK L +P V+WITKV G I EN+ AI P++IGIL DL+ R + G++
Sbjct: 237 NPVIITRKRDLNIKTPAI-VYWITKVKEGEIGENIYAILPTNIGILTDLIYRAFKVGYNA 295
Query: 296 VAMDAFEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQAYQDKQWSVIARELERL 355
V +D EYL++ENG + +KFL++ KD VL T++L NP+A +++ +I +E +++
Sbjct: 296 VYIDCIEYLILENGTKATLKFLYNAKDIVLSNKGTIVLVINPKALGEQELKIIEKEFQKI 355
>pir||H75020 hypothetical protein PAB1116 - Pyrococcus abyssi (strain Orsay)
>gi|5459120|emb|CAB50606.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 353
Score = 162 bits (406), Expect = 6e-39
Identities = 108/363 (29%), Positives = 194/363 (52%), Gaps = 30/363 (8%)
Query: 5 INVVTRGLMWILSFYRWIRKREPLMIIITLAFWSDFLGVLTQPIVSKMLGVSPDVSNISP 64
+N+++R +++I S Y+ ++ R+ II++ AF L + + + L V +NI
Sbjct: 9 LNLLSRLILFISSSYKAVKTRDSGWIILSFAFLLPILDI--EEFILAPLNVEVKENNILN 66
Query: 65 LMSTYALLEGIFLFLATMYTLGTIKKAWAQVTSFVVFQVGSLYIVLSTIFKADLP----- 119
++ + + A ++T+ + ++T+ +GS ++ + +
Sbjct: 67 VIPNF--------YYAILFTMAGTLIRYRRITAKTSMIIGSTLLIAQILMFGNATKAINT 118
Query: 120 -VISAFSVLFMGISMILLGISLLKREIESRG-IAALFPIGLILLGSINLTYPLLVYSK-L 176
V+S + L G+SM+ LG L+ SRG I LFPIG I +G +NLTYP+ L
Sbjct: 119 LVVSIIAYLGYGLSMVYLGFVLISH---SRGTIETLFPIGTIGVGLLNLTYPITSNIPIL 175
Query: 177 APYLYGAGAVFRVLMIIGLFKYTIFEVKPPKIQEII--LKPGAFYTDNESEFESVIMKMQ 234
+ + A+FR + IG K I + P+ + L+PGA++T+++ +I +
Sbjct: 176 STSFFTLAAIFRFMAAIGAIKMIILIPEEPRKSKRTKGLQPGAYWTESKKGALELISQ-- 233
Query: 235 LSGNGVLITRKLPKMSPTFP--VFWITKVTSGRIDENVTAIQPSDIGILIDLVKRHLEKG 292
N V+ITR+ P + FP ++WITK G+I ENV AI P+ I ILIDL+ R E G
Sbjct: 234 --SNPVIITRRNP-LDINFPAAIYWITKAKEGKIRENVYAISPTKIDILIDLINRAFEMG 290
Query: 293 HSVVAMDAFEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQAYQDKQWSVIAREL 352
+ + +D EYL +ENG +KFL+++KD + K N ++L NP+ +++++ +I +E
Sbjct: 291 YKTLYIDCLEYLALENGTNATLKFLYTIKDIITKHNGVILLALNPKTFEEREVKMIEKEF 350
Query: 353 ERL 355
+++
Sbjct: 351 KKI 353
>pir||E71164 hypothetical protein PH0514 - Pyrococcus horikoshii
>gi|3256919|dbj|BAA29602.1| (AP000002) 352aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 352
Score = 94.0 bits (230), Expect = 2e-18
Identities = 87/311 (27%), Positives = 149/311 (46%), Gaps = 28/311 (9%)
Query: 59 VSNISPLMSTYAL------LEGIFLFLATMYTLGTIKKAWAQVTSFVVFQVGSLYIVLST 112
++ +S L+ Y L L F+A Y +KA T ++ + L I +
Sbjct: 48 LNTLSDLLKNYFLNQLFLALSSACFFMALYYLEAEEEKAVPSKTLYLTLSLTPLLITIYV 107
Query: 113 -IFKADLPVISAFSVL-----FMGISMILLGISLLK-REIESRGIAALFPIGLILLGSIN 165
+ + +P +S++ G ++ G+S+LK R+I I L LI +G+
Sbjct: 108 WLLERVIPTSETWSIVGVSWGISGFFILASGVSILKLRDIFGNRILWL-SASLIAIGAHE 166
Query: 166 LTYPLLVYSK-LAPYLYGAGAVFRVLMIIGLF----KYTIFEVKPPKIQEIILKPGAFYT 220
+ YP L K AP + A F VL++ G+F F+ K P I LKPG+
Sbjct: 167 MDYPFLRPIKWFAPIGFLLAATFVVLLVYGIFLVFGSEVYFKRKSPGKISIKLKPGSMIM 226
Query: 221 DNESEFESVIMKMQLSGNGVLITRKLPKMSPTFPVFWITKVTSGRIDENVTAIQPSDIGI 280
+ E EF+++ +Q VL + K T+ +++T+ S + A+ P ++
Sbjct: 227 NME-EFKAISPSLQ--NFPVLAFVRHLKTPETWYSYFVTRARS-----DGGAVDPMNLPR 278
Query: 281 LIDLVKRHLEK-GHSVVAMDAFEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQA 339
+I+L +++ + VV +D EYLV+ NGFE K L L+D+ N TLIL T+ +A
Sbjct: 279 IIELSRKYFQSVERGVVVIDCLEYLVLYNGFENTAKHLAILRDYATVNNGTLILITSKEA 338
Query: 340 YQDKQWSVIAR 350
+ +K+WS++ R
Sbjct: 339 WGEKEWSLLVR 349
>pir||F71027 hypothetical protein PH1514 - Pyrococcus horikoshii
>gi|3257939|dbj|BAA30622.1| (AP000006) 310aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 310
Score = 77.6 bits (188), Expect = 2e-13
Identities = 85/354 (24%), Positives = 158/354 (44%), Gaps = 58/354 (16%)
Query: 3 ELINVVTRGLMWILSFYRWIRKREPLMIIITLAFWSDFLGVLTQPIVSKMLGVSPDVSNI 62
+LI +V ++++L FY + + R I LAF S +G+ +
Sbjct: 6 QLILMVPLLVVYVLLFYHYHKSRSNYAIYYALAFLSLGVGLAIE---------------- 49
Query: 63 SPLMSTYALLEGIFLFLATMYTLGTIKKAWAQVTSFVVFQVGSLYIVLSTIFKAD---LP 119
STY FL+ Y L TI+ + + F+ + S + A P
Sbjct: 50 ----STYL---ASISFLSFFYWLATIR-----LLEHLEFEEKQELLYASPVPLAAYIFFP 97
Query: 120 VISAFSVLFMGISMILLGISLLKREIESRGIAALFPIGLILLGSINLTYPLLVYSKLAPY 179
+ A ++F+ +S L G +L ++ + I L + LIL L L Y Y
Sbjct: 98 RLLAVIIIFVALS--LTGFMMLMKK--EKNIKILGALTLILA----LVSALGEYKSFFRY 149
Query: 180 LYGA-GAVFRVLMIIGLFKYTIFEVKPPKIQEIILKPGAFYTDNESEFESVIMKMQLSGN 238
L G +++ G+ + + ++K +E +KPG + ++ + L
Sbjct: 150 LSAVIGISIGYVIVAGISEVDLVKIKLS--EEFEIKPGIMFLES--------VPRDLLKV 199
Query: 239 GVLITRKLPKMSPTFPVFWITKVTSGRIDENVTAIQPSDIGILIDLVKRHLEKGHSVVAM 298
++ +R+ P+ + FWITK+ E I P+D+ ++DL +H++KG +V +
Sbjct: 200 ALVFSRRPPEKNDG-KWFWITKL------EGKNNIGPTDLHKILDLAVKHIKKG-GIVII 251
Query: 299 DAFEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQAYQDKQWSVIAREL 352
D EYL++ENGFE +KFL L+D+ + N T+I+ + +++ +++ L
Sbjct: 252 DCLEYLILENGFERVLKFLAQLRDYAIMYNSTVIILGSLDKLSERERAMLRSSL 305
>pir||A75068 hypothetical protein PAB1351 - Pyrococcus abyssi (strain Orsay)
>gi|5458951|emb|CAB50438.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 355
Score = 77.6 bits (188), Expect = 2e-13
Identities = 84/354 (23%), Positives = 160/354 (44%), Gaps = 29/354 (8%)
Query: 4 LINVVTRGLMWILSFYRWIRKREPLMIIITLAFWSDFLGVLTQPIVSKMLGVSPDVSNIS 63
LI + T G ++L Y R+R L+ + L +S L L+ I + L + IS
Sbjct: 13 LIKLATSG--YLLRIYFRTRRRSSLIFSVALLVYS--LVTLSDLIGNYFL------NQIS 62
Query: 64 PLMSTYALLEGIFLFLATMYTLGTIKKAWAQVTSFVVFQVGSLYIVLSTIFKADLPVISA 123
+++ + I+ F L K + ++ + +++ T+ + + I A
Sbjct: 63 LALTSVFMFGAIYYFGIEEERLMGSKVVYVSISLTPIVVTLYTWLLQKTMVEFGIWGIVA 122
Query: 124 FSVLFMGISMILLGISLLKREIESRGIAALFPIGLILLGSINLTYPLL-VYSKLAPYLYG 182
+ G ++L G+ L+ + + L+ +G+ + YP L AP +
Sbjct: 123 INWGVSGFFILLSGLLALELRRTFKSDVFWLALPLMAIGAHEMDYPFLRPIQWFAPIGFL 182
Query: 183 AGAVFRVLMIIGLFKY----TIFE---VKPPKIQEIILKPGAFYTDNESEFESVIMKMQL 235
A F VL+ G+ K T F VK P +I L PG+ ++ EF ++ ++
Sbjct: 183 LAATFVVLLAYGIVKVFGSETYFHGRSVKRPT--QINLSPGSIVMGSQ-EFNRIVQNLK- 238
Query: 236 SGNGVLITRKLPKMSPTFPVFWITKVTSGRIDENVTAIQPSDIGILIDLVKRHLEK-GHS 294
+ R + + + F VT R D NV + P+++ +++L K++ + +
Sbjct: 239 DFPVLAFVRNIKPLDGWYSYF----VTRAREDGNV--LSPTNLPRMLELSKKYFQSVENG 292
Query: 295 VVAMDAFEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQAYQDKQWSVI 348
+V +D EY + NGFE +K+L L+D+ + N TLI+ T+ + DK+WS++
Sbjct: 293 IVVIDCLEYFSIYNGFENTLKYLAMLRDYAVLHNGTLIIVTDRMLWNDKEWSLL 346
>pir||C75140 hypothetical protein PAB1746 - Pyrococcus abyssi (strain Orsay)
>gi|5458347|emb|CAB49836.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 248
Score = 75.3 bits (182), Expect = 1e-12
Identities = 67/243 (27%), Positives = 113/243 (45%), Gaps = 23/243 (9%)
Query: 126 VLFMGISMILLGISLLKREIESRGIAALFPIGLILLGSINLTYPLLVYSKLAPY------ 179
V F+ ++I+L I +++ +E+ L+ + I Y + V + + PY
Sbjct: 16 VSFVAFTIIILLILFVRKYLENLFGKRAVRYSLVGIAVIWFGYLVNVLNDIIPYKTLKIV 75
Query: 180 ---LYGAGAVFRVLMIIGLFKYTIFEVKPPKIQEI--ILKPGAFYTDNESEFESVIMKMQ 234
L G L L + +V+P I + GA+YT N + E I K+
Sbjct: 76 DDVLESIGIAILALTTFYLARGFSLKVRPKAINHPGEPIPSGAYYTTNLNGQE--IQKL- 132
Query: 235 LSGNGVLITRKLPKMSPTF--PVFWITKVTSGRIDENVTAIQPSDIGILIDLVKRHLEKG 292
LSG L + PK+ P W++ V E +I+P+ + L+ + +L++
Sbjct: 133 LSGKKALAITRSPKIWKELGIPYIWVSNV------EGEKSIEPTKLAPLMHYILSNLDE- 185
Query: 293 HSVVAMDAFEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQAYQDKQWSVIAREL 352
++ V +D+ +YL++ NG + +KFL SLKD+VL N LIL NP + W I RE
Sbjct: 186 NTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGTIQREF 245
Query: 353 ERL 355
+ L
Sbjct: 246 QEL 248
>pir||G75106 hypothetical protein PAB0444 - Pyrococcus abyssi (strain Orsay)
>gi|5458079|emb|CAB49568.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 319
Score = 69.9 bits (168), Expect = 5e-11
Identities = 79/352 (22%), Positives = 157/352 (44%), Gaps = 64/352 (18%)
Query: 12 LMWILSFYRW-IRKREPLMIIITLAFWSDFLGVLTQPIVSKMLGVSPDVSNISPLMSTYA 70
+++++ FY + I + ++ +LAF S +G++ + A
Sbjct: 16 VIYVVLFYHYHISRNSSYLMYFSLAFLSLGVGIMVED----------------------A 53
Query: 71 LLEGIFLFLATMYTLGTIKKAWAQVTSFVVFQVGSLYIVLSTIFKADLPVISAFSVLFMG 130
L G+ F ++ + +G I+ ++ F + L V T + + + V+ +
Sbjct: 54 YLAGL-AFFSSFFWIGVIQFL-RRLGGFKGLNLKYLLYVAPTSLASYMFFLDRSEVITLV 111
Query: 131 ISMILLGISLLKREIESRGIAALFPIGLILLGSINLTYPLLVYSKLAPYLYGAGAVFRVL 190
I ++L + + + + ++F + L+L+ YS LA YL+ V+
Sbjct: 112 IVSLMLTLLAIMLAFKKVKLTSVFLVLLVLVSVFGY------YSDLAKYLF-------VI 158
Query: 191 MIIGLFKYTIFEVK---------PPKI-QEIILKPGAFYTDNESEFESVIMKMQLSGNGV 240
+ L + I E K PP +E+ LKPG + + E I+K+ L
Sbjct: 159 IATTLGYFLIVETKIDLRKTILSPPSTGEELKLKPGVIFAETIPED---ILKVAL----- 210
Query: 241 LITRKLPKMSPTFPVFWITKVTSGRIDENVTAIQPSDIGILIDLVKRHLEKGHSVVAMDA 300
+ +RK K F W+TK+ S +V I+P+++ ++ L +L+K VV +D
Sbjct: 211 VFSRKPGKGERWF---WVTKLKSS----DVNTIEPTNLPKILSLAVDYLKK-KGVVVIDC 262
Query: 301 FEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQAYQDKQWSVIAREL 352
+YL++ENGFE +KF+ L+D+ + ++I+ + DK+ ++ R L
Sbjct: 263 LDYLILENGFESVIKFMAHLRDYAVMHGSSVIILGPLEGLSDKEKVMLKRAL 314
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.326 0.142 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126630925
Number of Sequences: 2977
Number of extensions: 5070105
Number of successful extensions: 15824
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 15810
Number of HSP's gapped (non-prelim): 9
length of query: 366
length of database: 189,106,746
effective HSP length: 55
effective length of query: 311
effective length of database: 156,189,961
effective search space: 48575077871
effective search space used: 48575077871
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 166 (69.1 bits)