BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0419 (PAB0419) DE:Hypothetical protein
(265 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75181 hypothetical protein PAB0419 - Pyrococcus abyssi (st... 531 e-150
pir||G71032 hypothetical protein PH1551 - Pyrococcus horikoshii ... 504 e-142
pir||B69191 conserved hypothetical protein MTH684 - Methanobacte... 199 4e-50
gi|11498103 conserved hypothetical protein [Archaeoglobus fulgid... 167 1e-40
emb|CAC12414.1| (AL445067) conserved hypothetical protein [Therm... 166 2e-40
gb|AAK41032.1| Conserved hypothetical protein [Sulfolobus solfat... 159 3e-38
emb|CAB57567.1| (Y18930) hypothetical protein [Sulfolobus solfat... 159 3e-38
pir||H72623 hypothetical protein APE1448 - Aeropyrum pernix (str... 123 2e-27
sp|Q09704|YA2E_SCHPO HYPOTHETICAL 36.7 KD PROTEIN C2F7.14C IN CH... 100 2e-20
gi|6321860 3->5 exoribonuclease; Component of the exosome 3->5 e... 86 5e-16
gb|AAF47028.1| (AE003461) CG3931 gene product [Drosophila melano... 81 2e-14
dbj|BAA91977.1| (AK001916) unnamed protein product [Homo sapiens... 74 2e-12
emb|CAB62879.1| (AL035475) conserved hypothetical protein, MAL4P... 69 4e-11
>pir||D75181 hypothetical protein PAB0419 - Pyrococcus abyssi (strain Orsay)
>gi|5458041|emb|CAB49531.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 265
Score = 531 bits (1353), Expect = e-150
Identities = 265/265 (100%), Positives = 265/265 (100%)
Query: 1 MKRIFVQNRELVVPGTLLAQGPYKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPY 60
MKRIFVQNRELVVPGTLLAQGPYKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPY
Sbjct: 1 MKRIFVQNRELVVPGTLLAQGPYKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPY 60
Query: 61 IPEVGDNVIGKIVDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLLRTDLRKFFDIGDIIY 120
IPEVGDNVIGKIVDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLLRTDLRKFFDIGDIIY
Sbjct: 61 IPEVGDNVIGKIVDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLLRTDLRKFFDIGDIIY 120
Query: 121 AKVKAITEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTR 180
AKVKAITEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTR
Sbjct: 121 AKVKAITEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTR 180
Query: 181 IIVGQNGWIWVSGKNDALEKLAIEAILKIDKESHTRGLTDRIKALLLSRLQELKEKGVIE 240
IIVGQNGWIWVSGKNDALEKLAIEAILKIDKESHTRGLTDRIKALLLSRLQELKEKGVIE
Sbjct: 181 IIVGQNGWIWVSGKNDALEKLAIEAILKIDKESHTRGLTDRIKALLLSRLQELKEKGVIE 240
Query: 241 EIPKLEEEPQGEDEVNGNDGEARGA 265
EIPKLEEEPQGEDEVNGNDGEARGA
Sbjct: 241 EIPKLEEEPQGEDEVNGNDGEARGA 265
>pir||G71032 hypothetical protein PH1551 - Pyrococcus horikoshii
>gi|3257980|dbj|BAA30663.1| (AP000006) 265aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 265
Score = 504 bits (1284), Expect = e-142
Identities = 251/263 (95%), Positives = 257/263 (97%)
Query: 1 MKRIFVQNRELVVPGTLLAQGPYKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPY 60
MKRIFVQNRELVVPGTLLAQGPYKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPY
Sbjct: 1 MKRIFVQNRELVVPGTLLAQGPYKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPY 60
Query: 61 IPEVGDNVIGKIVDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLLRTDLRKFFDIGDIIY 120
IPEVGDNVIGKIVDVKFSSWVVDIGAPY ANLKIQDFTDEKIDLLRTDLRKFFDIGDIIY
Sbjct: 61 IPEVGDNVIGKIVDVKFSSWVVDIGAPYLANLKIQDFTDEKIDLLRTDLRKFFDIGDIIY 120
Query: 121 AKVKAITEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTR 180
KVKAITEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTR
Sbjct: 121 GKVKAITEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTR 180
Query: 181 IIVGQNGWIWVSGKNDALEKLAIEAILKIDKESHTRGLTDRIKALLLSRLQELKEKGVIE 240
IIVGQNGWIWV+GKN+ALEKLAIEAILKID+ESHT+GLTDRIK+LLLSRLQELKEKGVIE
Sbjct: 181 IIVGQNGWIWVNGKNEALEKLAIEAILKIDRESHTKGLTDRIKSLLLSRLQELKEKGVIE 240
Query: 241 EIPKLEEEPQGEDEVNGNDGEAR 263
EIP+LEEEPQ E EVN NDGE R
Sbjct: 241 EIPELEEEPQEETEVNNNDGETR 263
>pir||B69191 conserved hypothetical protein MTH684 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621769|gb|AAB85189.1| (AE000848) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 311
Score = 199 bits (500), Expect = 4e-50
Identities = 108/258 (41%), Positives = 162/258 (61%), Gaps = 10/258 (3%)
Query: 4 IFVQNRELVVPGTLLAQGPYKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPE 63
+ V ++LVVPG +LA+ Y GRGTF+E +RI S+ +GLV ++ I VIPL+ YIP+
Sbjct: 2 LLVNEKDLVVPGQVLAENEYFPGRGTFKEDNRICSSFVGLVSVRNKKINVIPLQSKYIPK 61
Query: 64 VGDNVIGKIVDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLLRTDLRKFFDIGDIIYAKV 123
GD VIG+I D++FS W +DI +PY L + + + +L FDI D++ +V
Sbjct: 62 RGDVVIGEITDIRFSMWGLDINSPYTGLLPASEVFGKD----KRELESVFDIVDVLLLRV 117
Query: 124 KAITEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRIIV 183
+ EV + L KG G + G +V ITP++VPR+IG+ GSMINM+K+ T I+V
Sbjct: 118 VDVDEVKKVKLGLKGRGL--GKFRDGILVYITPTKVPRLIGKRGSMINMVKEKTHCDIVV 175
Query: 184 GQNGWIWVSGKNDALEKLAIEAILKIDKESHTRGLTDRIKALLLSRLQELKEKGVIEEIP 243
GQNG +W+ G+ D +E++A + +L ID+E+HT GLTDR++ LL RL ++ + +EE
Sbjct: 176 GQNGVVWIKGEPD-MERIAEKVVLMIDREAHTSGLTDRVRE-LLDRLTGVEPEIQVEESE 233
Query: 244 KLE--EEPQGEDEVNGND 259
E E P+ ED +D
Sbjct: 234 GTEKPETPESEDFEEASD 251
>gi|11498103 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483018|pir||D69311 conserved hypothetical protein
AF0492 - Archaeoglobus fulgidus
>gi|2650134|gb|AAB90745.1| (AE001070) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 223
Score = 167 bits (418), Expect = 1e-40
Identities = 96/221 (43%), Positives = 134/221 (60%), Gaps = 6/221 (2%)
Query: 9 RELVVPGTLLAQGPYKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNV 68
R++V+PG LL+ P G GT+ EG ++Y+ +IGL D +RVIPL+G Y P VGD V
Sbjct: 2 RKIVLPGDLLSTNPRAAGYGTYVEGGKVYAKIIGLFDQTETHVRVIPLKGRYTPSVGDVV 61
Query: 69 IGKIVDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLLRTDLRKFFDIGDIIYAKVKAITE 128
IG I +V + W VDI +PY A L + + + K + ++ DIGD I AKV I
Sbjct: 62 IGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEV---LDIGDAIIAKVLNIDP 118
Query: 129 VNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRIIVGQNGW 188
+ LT K P++ G+IV I P+RVPRVIG+ GSMI ++K +I+VGQNG
Sbjct: 119 KMKVTLTMKDRICR--PIRFGRIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGL 176
Query: 189 IWVSGKNDALEKLAIEAILKIDKESHTRGLTDRIKALLLSR 229
IWV+G + +A EAI I++E+HT GLTDR+ + R
Sbjct: 177 IWVNGDRRKV-SIAEEAIYLIEQEAHTEGLTDRVAEFIKRR 216
>emb|CAC12414.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 236
Score = 166 bits (417), Expect = 2e-40
Identities = 93/221 (42%), Positives = 137/221 (61%), Gaps = 12/221 (5%)
Query: 9 RELVVPGTLL-AQGPYKNG--RGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVG 65
+++V+PG + QG +NG RG + +R YS G + + + V+P G YIP G
Sbjct: 8 KKIVLPGDPIEVQGKMRNGVYRG---QDNRYYSEYFGTLQVNDQFVDVVPFSGQYIPRKG 64
Query: 66 DNVIGKIVDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLLRTDLRKFFDIGDIIYAKVKA 125
D VIGK+++V S+W VDI +PY A L + D + DL+++ + GD IYAK+ +
Sbjct: 65 DKVIGKVIEVGPSTWTVDINSPYFAMLHMNDTPWR---MSSGDLKRYLNAGDYIYAKIMS 121
Query: 126 ITEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRIIVGQ 185
+ E+ LT K L+GG +V I SRVPRVIG+GG M+NM+K+LT TRII+GQ
Sbjct: 122 VNEIKESWLTLKEPGLK--KLEGGHMVLIHASRVPRVIGKGGGMVNMVKELTATRIIIGQ 179
Query: 186 NGWIWVSGKNDALEKLAIEAILKIDKESHTRGLTDRIKALL 226
NG IW+ G + + +AI AI I++E+HT GLT R+++ L
Sbjct: 180 NGLIWIDGPIEGV-TMAIAAIEMIEREAHTEGLTARVESFL 219
>gb|AAK41032.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 249
Score = 159 bits (398), Expect = 3e-38
Identities = 92/234 (39%), Positives = 135/234 (57%), Gaps = 6/234 (2%)
Query: 2 KRIFVQNRELVVPGTLLAQGPYKNGRGTF--REGSRIYSTVIGLVDIKGNTIRVIPLEGP 59
++I +Q R +VVPG LLA+G ++ + + S+ YSTV+GL D+K VIPLEG
Sbjct: 7 QKIVLQPRSIVVPGELLAEGEFQIPWSPYILKINSKYYSTVVGLFDVKDTQFEVIPLEGS 66
Query: 60 -YIPEVGDNVIGKIVDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLLRTDLRKFFDIGDI 118
Y P++ D VIG + DV+ WVVDI APY A L + I++ DLR++ D+GD
Sbjct: 67 FYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINV-GEDLRRYLDVGDY 125
Query: 119 IYAKVKAITEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTM 178
+ A+++ + L+ KG G + G ++ I P +VPRVIG+ SM + +
Sbjct: 126 VIARIENFDRSIDPVLSVKGKDL--GRVSNGIVIDIMPVKVPRVIGKNKSMYETLTSKSG 183
Query: 179 TRIIVGQNGWIWVSGKNDALEKLAIEAILKIDKESHTRGLTDRIKALLLSRLQE 232
I V NG IW + + E++ IEAI KI+ ESH +GLTDRIK + +L E
Sbjct: 184 CSIFVANNGRIWATCPSRFSEEILIEAIRKIENESHIKGLTDRIKQFIEEKLGE 237
>emb|CAB57567.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 249
Score = 159 bits (398), Expect = 3e-38
Identities = 92/234 (39%), Positives = 135/234 (57%), Gaps = 6/234 (2%)
Query: 2 KRIFVQNRELVVPGTLLAQGPYKNGRGTF--REGSRIYSTVIGLVDIKGNTIRVIPLEGP 59
++I +Q R +VVPG LLA+G ++ + + S+ YSTV+GL D+K VIPLEG
Sbjct: 7 QKIVLQPRSIVVPGELLAEGEFQIPWSPYILKINSKYYSTVVGLFDVKDTQFEVIPLEGS 66
Query: 60 -YIPEVGDNVIGKIVDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLLRTDLRKFFDIGDI 118
Y P++ D VIG + DV+ WVVDI APY A L + I++ DLR++ D+GD
Sbjct: 67 FYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINV-GEDLRRYLDVGDY 125
Query: 119 IYAKVKAITEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTM 178
+ A+++ + L+ KG G + G ++ I P +VPRVIG+ SM + +
Sbjct: 126 VIARIENFDRSIDPVLSVKGKDL--GRVSNGIVIDIMPVKVPRVIGKNKSMYETLTSKSG 183
Query: 179 TRIIVGQNGWIWVSGKNDALEKLAIEAILKIDKESHTRGLTDRIKALLLSRLQE 232
I V NG IW + + E++ IEAI KI+ ESH +GLTDRIK + +L E
Sbjct: 184 CSIFVANNGRIWATCPSRFSEEILIEAIRKIENESHIKGLTDRIKQFIEEKLGE 237
>pir||H72623 hypothetical protein APE1448 - Aeropyrum pernix (strain K1)
>gi|5105132|dbj|BAA80446.1| (AP000061) 235aa long
hypothetical protein [Aeropyrum pernix]
Length = 235
Score = 123 bits (307), Expect = 2e-27
Identities = 74/187 (39%), Positives = 111/187 (58%), Gaps = 4/187 (2%)
Query: 38 STVIGLVDIKGNT--IRVIPLEGPYIPEVGDNVIGKIVDVKFSSWVVDIGAPYPANLKIQ 95
+TV+GL+ KG+ + L+ Y+P+ GD VIG I V +W VDI +PY A L +Q
Sbjct: 38 ATVVGLLREKGDGGGRAFVKLKEIYVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQ 97
Query: 96 DFTDEKIDLLRTDLRKFFDIGDIIYAKVKAITEVNNIDLTTKGMPFNGGPLKGGQIVKIT 155
DF + D++ +GD I AKV A + + LT +G G + G+IV+I+
Sbjct: 98 DFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQGEGL--GRIVRGKIVEIS 155
Query: 156 PSRVPRVIGRGGSMINMIKKLTMTRIIVGQNGWIWVSGKNDALEKLAIEAILKIDKESHT 215
P++VPRVIGR SM+ +++ T +I V +NG I + N+ LE +A+ AI ID+E++T
Sbjct: 156 PAKVPRVIGRKMSMLKTLEEKTECKIFVARNGRIHLECPNEDLEAIAVMAIKIIDEEAYT 215
Query: 216 RGLTDRI 222
GLT RI
Sbjct: 216 SGLTKRI 222
>sp|Q09704|YA2E_SCHPO HYPOTHETICAL 36.7 KD PROTEIN C2F7.14C IN CHROMOSOME I
>gi|2130382|pir||S58158 hypothetical protein SPAC2F7.14c
- fission yeast (Schizosaccharomyces pombe)
>gi|7491060|pir||T38562 hypothetical protein SPAC2F7.14c
- fission yeast (Schizosaccharomyces pombe)
>gi|1052797|emb|CAA90501.1| (Z50142) conserved
hypothetical protein [Schizosaccharomyces pombe]
Length = 329
Score = 100 bits (247), Expect = 2e-20
Identities = 61/196 (31%), Positives = 98/196 (49%), Gaps = 15/196 (7%)
Query: 8 NRELVVPGTLLAQGP-YKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGD 66
++ LV PG L+ P + G GT+ E IY++V G V I V PL Y+PE+GD
Sbjct: 54 HQNLVTPGQLVTDDPQFMRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGD 113
Query: 67 NVIGKIVDVKFSSWVVDIGAPYPANLKIQDFT------DEKIDLLRTDLRKFFDIGDIIY 120
+IGKI +V+ W VDIGA A L + K++ +R FF GD++
Sbjct: 114 LIIGKIAEVQPKRWKVDIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLV 173
Query: 121 AKVKAITEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTR 180
A+V+ ++ + T+ + + G L+ G +K+ P+ V R ++ +
Sbjct: 174 AEVQQYFSDGSVSIHTRSLKY--GKLRNGVFLKVPPALVVRSKSHAYALAGGVD------ 225
Query: 181 IIVGQNGWIWVSGKND 196
II+ NG++WVS N+
Sbjct: 226 IILSVNGYVWVSKHNE 241
>gi|6321860 3->5 exoribonuclease; Component of the exosome 3->5 exonuclease
complex with Rrp41p, Rrp42p, Rrp43p and Dis3p (Rrp44p).;
Rrp4p [Saccharomyces cerevisiae]
>gi|731671|sp|P38792|YHM9_YEAST HYPOTHETICAL 39.4 KDA
PROTEIN IN DYS1-PLC5 INTERGENIC REGION
>gi|626627|pir||S46714 hypothetical protein YHR069c -
yeast (Saccharomyces cerevisiae)
>gi|487962|gb|AAB68393.1| (U00061) Yhr069cp
[Saccharomyces cerevisiae] >gi|1588284|prf||2208299A
exonuclease [Saccharomyces cerevisiae]
Length = 359
Score = 85.8 bits (209), Expect = 5e-16
Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 15/189 (7%)
Query: 10 ELVVPGTLLAQGP-YKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNV 68
++V PG L+ P + G GT+ + YS+V G V + VIPL+G Y PE GD+V
Sbjct: 53 QIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHV 112
Query: 69 IGKIVDVKFSSWVVDIGAPYPANLKIQD------FTDEKIDLLRTDLRKFFDIGDIIYAK 122
+G+I +V W VDIG A L + K + +R F GD++ A+
Sbjct: 113 VGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAE 172
Query: 123 VKAITEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRII 182
V+++ + + L T+ + + G L+ G ++ S + R ++ I ++
Sbjct: 173 VQSLFQDGSASLHTRSLKY--GKLRNGMFCQVPSSLIVRAKNHTHNLPGNI------TVV 224
Query: 183 VGQNGWIWV 191
+G NG+IW+
Sbjct: 225 LGVNGYIWL 233
>gb|AAF47028.1| (AE003461) CG3931 gene product [Drosophila melanogaster]
Length = 298
Score = 80.8 bits (196), Expect = 2e-14
Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 15/186 (8%)
Query: 14 PG-TLLAQGPYKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDNVIGKI 72
PG L+ + + G GTF E I S+V G++ I V PL+ Y+ E+GD V+ ++
Sbjct: 32 PGEVLMPEAGFMRGHGTFVEDENIKSSVAGVIQKVNKLISVRPLKSRYVGEIGDVVVARV 91
Query: 73 VDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLLRTD------LRKFFDIGDIIYAKVKAI 126
+V+ W VD + + L + +L R +R++ D GD+I A+V+ I
Sbjct: 92 SEVQQKRWRVDTNSRLDSILLLSSVNLPGGELRRRSAEDEQMMRRYLDEGDLISAEVQNI 151
Query: 127 TEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRIIVGQN 186
E ++ L T+ + + G L G +VK+ P+ V R ++ +I+G N
Sbjct: 152 FEEGSLSLYTRSLKY--GKLSQGILVKVFPALVKR------RKMHFHNLPCGASVILGNN 203
Query: 187 GWIWVS 192
G+IW+S
Sbjct: 204 GYIWIS 209
>dbj|BAA91977.1| (AK001916) unnamed protein product [Homo sapiens]
>gi|10433864|dbj|BAB14043.1| (AK022460) unnamed protein
product [Homo sapiens]
Length = 293
Score = 73.7 bits (178), Expect = 2e-12
Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 9 RELVVPG-TLLAQGPYKNGRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEVGDN 67
+ LVVPG T+ + G GT+ ++ ++V G V+ I V L+ YI EVGD
Sbjct: 24 KHLVVPGDTITTDTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDI 83
Query: 68 VIGKIVDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLLRTD------LRKFFDIGDIIYA 121
V+G+I +V+ W V+ + + L + +L R +R F GD+I A
Sbjct: 84 VVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISA 143
Query: 122 KVKAITEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKKLTMTRI 181
+V+A+ + L T+ + + G L G +V+++PS V R + +
Sbjct: 144 EVQAVFSDGAVSLHTRSLKY--GKLGQGVLVQVSPSLVKR------QKTHFHDLPCGASV 195
Query: 182 IVGQNGWIWVSGKNDALEKLA------IEAILKIDKESHTRGLTDRIKALLLSRL 230
I+G NG+IW+ + E+ A +E + D+E +R L + I +L+ R+
Sbjct: 196 ILGNNGFIWIYPTPEHKEEEAGGFIANLEPVSLADREVISR-LRNCIISLVTQRM 249
>emb|CAB62879.1| (AL035475) conserved hypothetical protein, MAL4P2.38 [Plasmodium
falciparum]
Length = 338
Score = 69.5 bits (167), Expect = 4e-11
Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 34/202 (16%)
Query: 9 RELVVPGTLLAQGPYKN----GRGTFREGSRIYSTVIGLVDIKGNTIRVIPLEGPYIPEV 64
++LV+PG + K+ G G + E Y+ ++G V+ I V PL+G Y V
Sbjct: 49 KKLVLPGECVLDKNDKDRFLKGGGLYEEDDMFYACILGRVNYINKLIYVEPLKGKYTGSV 108
Query: 65 GDNVIGKIVDVKFSSWVVDIGAPYPANLKIQDFTDEKIDLLRTDLRKFFDI--------- 115
GD ++GKI D+ W+V+IG+ A L I + I + +R + D+
Sbjct: 109 GDLLVGKIKDISNDKWIVEIGSYCRAYLSI---SQTNISIFSQRIRLYNDVINMIHIYKP 165
Query: 116 GDIIYAKVKAITEVNNIDLTTKGMPFNGGPLKGGQIVKITPSRVPRVIGRGGSMINMIKK 175
DII +++ I+ I L T+ + G L G ++ I P ++I+ KK
Sbjct: 166 DDIIACEIQRISTDGTIILHTRSSIY--GKLSNGVLI-IVPQ----------TLIHNQKK 212
Query: 176 LTM-----TRIIVGQNGWIWVS 192
+II+G NG+IW+S
Sbjct: 213 HIFVFPCNVQIILGMNGYIWIS 234
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.141 0.404
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106180157
Number of Sequences: 2977
Number of extensions: 4798642
Number of successful extensions: 19068
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 19035
Number of HSP's gapped (non-prelim): 13
length of query: 265
length of database: 189,106,746
effective HSP length: 55
effective length of query: 210
effective length of database: 156,189,961
effective search space: 32799891810
effective search space used: 32799891810
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)