BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0420 (rph) DE:ribonuclease PH (rph)
(249 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75181 ribonuclease ph (rph) PAB0420 - Pyrococcus abyssi (s... 491 e-138
pir||E71032 hypothetical protein PH1549 - Pyrococcus horikoshii ... 478 e-134
emb|CAC12415.1| (AL445067) RNase PH (yeast SIK6) related protein... 306 2e-82
gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus] 305 4e-82
emb|CAB57569.1| (Y18930) ribonuclease PH [Sulfolobus solfataricus] 305 4e-82
pir||A69191 tRNA nucleotidyltransferase (EC 2.7.7.56) - Methanob... 298 5e-80
gi|11498104 ribonuclease PH (rph) [Archaeoglobus fulgidus] >gi|7... 297 9e-80
pir||G72623 probable ribonuclease PH APE1447 - Aeropyrum pernix ... 272 3e-72
pir||T47954 exonuclease RRP41 [imported] - Arabidopsis thaliana ... 207 9e-53
gi|9506689 hypothetical protein [Homo sapiens] >gi|7020801|dbj|B... 183 2e-45
gb|AAF53263.1| (AE003639) CG15481 gene product [Drosophila melan... 148 7e-35
sp|Q17533|RNPH_CAEEL RIBONUCLEASE PH-LIKE PROTEIN B0564.1 >gi|38... 141 1e-32
pir||T11740 hypothetical protein - fission yeast (Schizosaccharo... 126 2e-28
pir||T11646 tRNA nucleotidyltransferase homolog - fission yeast ... 126 2e-28
gi|6321634 homolog of RNAse PH; Ski6p [Saccharomyces cerevisiae]... 115 5e-25
pir||E70320 polyribonucleotide nucleotidyltransferase - Aquifex ... 100 3e-20
sp|O67069|RNPH_AQUAE RIBONUCLEASE PH (RNASE PH) (TRNA NUCLEOTIDY... 99 3e-20
pir||D82978 ribonuclease PH PA5334 [imported] - Pseudomonas aeru... 99 4e-20
sp|P03842|RNPH_ECOLI RIBONUCLEASE PH (RNASE PH) (TRNA NUCLEOTIDY... 94 1e-18
sp|P50597|RNPH_PSEAE RIBONUCLEASE PH (RNASE PH) (TRNA NUCLEOTIDY... 94 2e-18
sp|P44444|RNPH_HAEIN RIBONUCLEASE PH (RNASE PH) (TRNA NUCLEOTIDY... 93 3e-18
pir||QQECPE tRNA nucleotidyltransferase (EC 2.7.7.56) - Escheric... 92 4e-18
pir||A72264 polynucleotide phosphorylase - Thermotoga maritima (... 92 8e-18
emb|CAB06341.1| (Z84207) polynucleotide phosphorylase [Thermus t... 91 1e-17
gb|AAF72714.1|AF263927_2 (AF263927) ribonuclease PH [Carnobacter... 91 1e-17
gb|AAA61996.1| (L10328) RNase PH [Escherichia coli] >gi|1790074|... 89 7e-17
sp|P28619|RNPH_BACSU RIBONUCLEASE PH (RNASE PH) (TRNA NUCLEOTIDY... 88 1e-16
sp|Q10628|RNPH_MYCTU PROBABLE RIBONUCLEASE PH (RNASE PH) (TRNA N... 88 1e-16
sp|O87792|PNP_PSEPU POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (P... 87 1e-16
pir||C83052 polyribonucleotide nucleotidyltransferase PA4740 [im... 87 1e-16
dbj|BAB06787.1| (AP001517) ribonuclease PH [Bacillus halodurans] 87 2e-16
pir||A44914 tRNA nucleotidyltransferase (EC 2.7.7.56) - Bacillus... 87 3e-16
pir||G81332 polyribonucleotide nucleotidyltransferase (EC 2.7.7.... 86 4e-16
sp|P37939|RNPH_MYCLE PROBABLE RIBONUCLEASE PH (RNASE PH) (TRNA N... 85 6e-16
sp|P50849|PNPA_BACSU POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (... 85 1e-15
sp|P57454|PNP_BUCAI POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (P... 85 1e-15
dbj|BAB06126.1| (AP001515) polynucleotide phosphorylase [Bacillu... 84 1e-15
pir||S74509 polyribonucleotide nucleotidyltransferase (EC 2.7.7.... 83 4e-15
pir||T36127 probable ribonuclease PH - Streptomyces coelicolor >... 83 4e-15
pir||D70200 polyribonucleotide nucleotidyltransferase (pnpA) hom... 81 1e-14
pir||D82350 ribonuclease PH VC0210 [imported] - Vibrio cholerae ... 81 1e-14
pir||H65106 polyribonucleotide nucleotidyltransferase (EC 2.7.7.... 81 1e-14
gb|AAA57967.1| (U18997) polynucleotide phosphorylase [Escherichi... 80 2e-14
sp|P05055|PNP_ECOLI POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (P... 80 2e-14
emb|CAA71697.1| (Y10692) pnp [Yersinia enterocolitica] 80 2e-14
sp|O34275|PNP_YEREN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (P... 80 2e-14
gi|9910360 exosome component Rrp46 [Homo sapiens] >gi|11424056|r... 80 2e-14
sp|Q9ZD43|PNP_RICPR POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (P... 80 3e-14
pir||A81866 tRNA nucleotidyltransferase (EC 2.7.7.56) - Neisseri... 80 3e-14
sp|P41121|PNP_PHOLU POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (P... 79 4e-14
pir||G81076 ribonuclease PH NMB1499 [imported] - Neisseria menin... 79 4e-14
pir||T49262 hypothetical protein F12M12.180 - Arabidopsis thalia... 79 4e-14
prf||2208281A 100RNP protein [Spinacia oleracea] 79 6e-14
gb|AAC49669.1| (U52048) polyribonucleotide phophorylase [Spinaci... 79 6e-14
pir||S64680 exoribonuclease 100 RNP - spinach 79 6e-14
pir||G75320 polynucleotide phosphorylase - Deinococcus radiodura... 79 6e-14
pir||C82673 ribonuclease PH XF1505 [imported] - Xylella fastidio... 77 2e-13
pir||A26118 polyribonucleotide nucleotidyltransferase (EC 2.7.7.... 77 2e-13
pir||E82298 polyribonucleotide nucleotidyltransferase VC0647 [im... 77 2e-13
pir||C71269 probable polyribonucleotide nucleotidyltransferase (... 76 3e-13
pir||H69190 conserved hypothetical protein MTH682 - Methanobacte... 76 4e-13
pir||G81725 polyribonucleotide nucleotidyltransferase TC0230 [im... 75 6e-13
pir||F82831 polynucleotide phosphorylase XF0239 [imported] - Xyl... 75 6e-13
sp|P44584|PNP_HAEIN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (P... 75 6e-13
sp|Q9ZCT5|RNPH_RICPR RIBONUCLEASE PH (RNASE PH) (TRNA NUCLEOTIDY... 75 6e-13
pir||T48631 polynucleotide phosphorylase - Arabidopsis thaliana ... 75 8e-13
pir||T50343 low homolog to ribonuclease ph-like protein [importe... 75 8e-13
gb|AAD28218.1|AF120720_1 (AF120720) ribonuclease PH [Legionella ... 75 1e-12
gb|AAF68421.1|AF237935_1 (AF237935) polynucleotide phosphorylase... 75 1e-12
pir||B75378 ribonuclease PH - Deinococcus radiodurans (strain R1... 74 2e-12
emb|CAA20272.1| (AL031231) guanosine pentaphosphate synthetase/ ... 73 2e-12
pir||T10932 polyribonucleotide nucleotidyltransferase (EC 2.7.7.... 73 2e-12
pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibio... 73 2e-12
pir||T44900 probable polyribonucleotide nucleotidyltransferase (... 73 3e-12
gb|AAF00646.1|AC009540_23 (AC009540) putative polynucleotide pho... 73 4e-12
emb|CAB85703.1| (AJ252123) putative polynucleotide phosphorylase... 73 4e-12
gb|AAB17498.1| (U19858) guanosine pentaphosphate synthetase [Str... 72 5e-12
pir||F70883 probable guanosine pentaphosphate synthetase and pol... 72 5e-12
pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibioticu... 72 5e-12
pir||E71463 probable polyribonucleotide nucleotidyltransferase -... 71 1e-11
pir||T06540 polyribonucleotide nucleotidyltransferase (EC 2.7.7.... 71 2e-11
pir||H81943 probable polyribonucleotide nucleotidyltransferase (... 71 2e-11
pir||E64671 polynucleotide phosphorylase - Helicobacter pylori (... 69 4e-11
pir||G72009 polyribonucleotide nucleotidyltransferase CP0855 [im... 69 4e-11
pir||E71845 polyribonucleotide nucleotidyltransferase - Helicoba... 68 8e-11
pir||C81161 polyribonucleotide nucleotidyltransferase NMB0758 [i... 68 8e-11
>pir||E75181 ribonuclease ph (rph) PAB0420 - Pyrococcus abyssi (strain Orsay)
>gi|5458042|emb|CAB49532.1| (AJ248284) ribonuclease PH
(rph) [Pyrococcus abyssi]
Length = 249
Score = 491 bits (1251), Expect = e-138
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MMEKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPR 60
MMEKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPR
Sbjct: 1 MMEKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPR 60
Query: 61 ELHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPR 120
ELHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPR
Sbjct: 61 ELHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPR 120
Query: 121 TAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEED 180
TAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEED
Sbjct: 121 TAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEED 180
Query: 181 NYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLK 240
NYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLK
Sbjct: 181 NYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLK 240
Query: 241 IAQEVEGSE 249
IAQEVEGSE
Sbjct: 241 IAQEVEGSE 249
>pir||E71032 hypothetical protein PH1549 - Pyrococcus horikoshii
>gi|3257978|dbj|BAA30661.1| (AP000006) 249aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 249
Score = 478 bits (1218), Expect = e-134
Identities = 242/249 (97%), Positives = 247/249 (99%)
Query: 1 MMEKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPR 60
MMEKPEGLKLIDENGRRIDGRKKYELRPIKM+VGVLKNANGSAYIEWG+NKIIAAVYGPR
Sbjct: 1 MMEKPEGLKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPR 60
Query: 61 ELHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPR 120
ELH KHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPR
Sbjct: 61 ELHSKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPR 120
Query: 121 TAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEED 180
T+IDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEED
Sbjct: 121 TSIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEED 180
Query: 181 NYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLK 240
NYGEADVPVAIMPLKNDITLLQMDGYLTK+EFIEAV+LAIKGAKAVYQKQREALKEKYLK
Sbjct: 181 NYGEADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKEKYLK 240
Query: 241 IAQEVEGSE 249
IAQEVE SE
Sbjct: 241 IAQEVEESE 249
>emb|CAC12415.1| (AL445067) RNase PH (yeast SIK6) related protein [Thermoplasma
acidophilum]
Length = 248
Score = 306 bits (775), Expect = 2e-82
Identities = 148/240 (61%), Positives = 189/240 (78%), Gaps = 1/240 (0%)
Query: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHL 67
+KLI+E+ R+DGR ELRPIK++ GVL A+GSAYIEWG NKI+ VYGP+E +PKH
Sbjct: 9 IKLINEDNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHS 68
Query: 68 QRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFI 127
Q D AI++ RYNMA FSV+ERK+PGPDRR++EISKVI AL ++++E FPR IDV+I
Sbjct: 69 QDIDHAIVKARYNMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYI 128
Query: 128 EVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADV 187
EVLQADAGTR+AG+TAA++ALADAG+PMRD+V C AGK++G +VLDL+KEEDNYGEAD+
Sbjct: 129 EVLQADAGTRIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEADI 188
Query: 188 PVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQEVEG 247
P+AIMP DI L+QMDG +T+DE +A+ + + K + Q QREAL KY KI EG
Sbjct: 189 PIAIMPKTGDIVLMQMDGDVTEDELYQAMDMIFEATKRISQIQREALLNKY-KIQDIGEG 247
>gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus]
Length = 248
Score = 305 bits (772), Expect = 4e-82
Identities = 148/243 (60%), Positives = 191/243 (77%), Gaps = 3/243 (1%)
Query: 2 MEKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRE 61
+E+P KLI ++G+R DGRK ELR IK+E+GVLKNA+GSA E G K IAAVYGP+E
Sbjct: 7 VERP---KLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKE 63
Query: 62 LHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRT 121
+HP+HL PDRA+LRVRY+M PFS +ERK P P RR IE+SKVI+ ALE A+++E+FPRT
Sbjct: 64 MHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRT 123
Query: 122 AIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDN 181
AIDVF E+LQADAG+R+ + AASLALADAGIPMRDL+A A GK +G I+LDLN+ ED
Sbjct: 124 AIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDM 183
Query: 182 YGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKI 241
+GEAD+P+A+MP N +TL Q++G +T DEF +A LA+KG +Y +REALK KY++
Sbjct: 184 WGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEF 243
Query: 242 AQE 244
+E
Sbjct: 244 KEE 246
>emb|CAB57569.1| (Y18930) ribonuclease PH [Sulfolobus solfataricus]
Length = 248
Score = 305 bits (772), Expect = 4e-82
Identities = 148/243 (60%), Positives = 191/243 (77%), Gaps = 3/243 (1%)
Query: 2 MEKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRE 61
+E+P KLI ++G+R DGRK ELR IK+E+GVLKNA+GSA E G K IAAVYGP+E
Sbjct: 7 VERP---KLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKE 63
Query: 62 LHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRT 121
+HP+HL PDRA+LRVRY+M PFS +ERK P P RR IE+SKVI+ ALE A+++E+FPRT
Sbjct: 64 MHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRT 123
Query: 122 AIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDN 181
AIDVF E+LQADAG+R+ + AASLALADAGIPMRDL+A A GK +G I+LDLN+ ED
Sbjct: 124 AIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDM 183
Query: 182 YGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKI 241
+GEAD+P+A+MP N +TL Q++G +T DEF +A LA+KG +Y +REALK KY++
Sbjct: 184 WGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEF 243
Query: 242 AQE 244
+E
Sbjct: 244 KEE 246
>pir||A69191 tRNA nucleotidyltransferase (EC 2.7.7.56) - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621768|gb|AAB85188.1| (AE000848) ribonuclease PH
[Methanobacterium thermoautotrophicum]
Length = 240
Score = 298 bits (754), Expect = 5e-80
Identities = 144/222 (64%), Positives = 183/222 (81%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
R DGR ELRP+K+E G+L+ A+GS+Y+E+G NKI+ AVYGPRE + LQRPDRA++R
Sbjct: 17 REDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIR 76
Query: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGT 136
RYNMAPFSVEERK+PGPDRRS+EISK+ AL PALILE FPR+ IDVFIEVL+A+ GT
Sbjct: 77 CRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGT 136
Query: 137 RVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKN 196
R AGITAAS+ALADAGIPMRD+V ACAAGK+ ++VLDL++EED G+ADVPVAI+P
Sbjct: 137 RCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPVAILPRTR 196
Query: 197 DITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKY 238
+ITLLQ DG LT +EF A+ LA++G +++ Q+EAL+++Y
Sbjct: 197 EITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRKRY 238
>gi|11498104 ribonuclease PH (rph) [Archaeoglobus fulgidus]
>gi|7435296|pir||E69311 ribonuclease PH (rph) homolog -
Archaeoglobus fulgidus >gi|2650133|gb|AAB90744.1|
(AE001070) ribonuclease PH (rph) [Archaeoglobus
fulgidus]
Length = 258
Score = 297 bits (752), Expect = 9e-80
Identities = 147/248 (59%), Positives = 197/248 (79%), Gaps = 8/248 (3%)
Query: 3 EKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPREL 62
EKPE L ++D G R+DGRK ELRPIK+E VLK A+GS Y+E GKNK+IAAV+GPRE+
Sbjct: 6 EKPEKL-IVD--GLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREV 62
Query: 63 HPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTA 122
HP+HLQ P +AI+R RYNMAPFSVEERK+PGPDRRSIEISKV K A E ++ E+FPR+A
Sbjct: 63 HPRHLQDPSKAIIRYRYNMAPFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSA 122
Query: 123 IDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNY 182
ID+F+EVLQADAG+R A + AAS+AL DAG+PM+ ++ + A GK +G++VLD KEEDN+
Sbjct: 123 IDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNF 182
Query: 183 GEADVPVAIMPLKN----DITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKY 238
GEAD+P A + ++N I LLQMDG +T+DE +A++LA KGA +Y+ QREA+ +Y
Sbjct: 183 GEADMPFAFL-IRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRY 241
Query: 239 LKIAQEVE 246
+++ +E++
Sbjct: 242 IEVGEEMD 249
>pir||G72623 probable ribonuclease PH APE1447 - Aeropyrum pernix (strain K1)
>gi|5105131|dbj|BAA80445.1| (AP000061) 246aa long
hypothetical ribonuclease PH [Aeropyrum pernix]
Length = 246
Score = 272 bits (688), Expect = 3e-72
Identities = 133/235 (56%), Positives = 181/235 (76%), Gaps = 1/235 (0%)
Query: 7 GLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKH 66
G++LI +GRR DGR +LRP++M+VG+L NA+GSA +E+G+ +++AAVYGPRE H +
Sbjct: 8 GVELI-RDGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRF 66
Query: 67 LQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVF 126
PDRA LRVRY+MAPFS +ERK P P RR IE+SKV++ ALEP ++ E FPRT IDVF
Sbjct: 67 YVLPDRAALRVRYHMAPFSTDERKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVF 126
Query: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
+EVLQAD GTR A +TAASLALADAGIPMR LV A GKI+G +V+D+++ ED YGEAD
Sbjct: 127 LEVLQADGGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEAD 186
Query: 187 VPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKI 241
+PVA P +ITLLQ++G LT +EF A+ +A++ V + ++EA+++ YL++
Sbjct: 187 MPVAAAPDIGEITLLQLNGVLTGEEFRTALAMALRAIDRVVEMEKEAIRKSYLEV 241
>pir||T47954 exonuclease RRP41 [imported] - Arabidopsis thaliana
>gi|6164938|gb|AAF04590.1|AF191741_1 (AF191741)
exonuclease RRP41 [Arabidopsis thaliana]
>gi|6850853|emb|CAB71092.1| (AL132959) exonuclease RRP41
[Arabidopsis thaliana]
Length = 241
Score = 207 bits (522), Expect = 9e-53
Identities = 109/230 (47%), Positives = 153/230 (66%), Gaps = 1/230 (0%)
Query: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHL 67
++ ++ G R+DGR+ E+R I EVGV+ A+GSA E G K+IAAVYGPRE+ K
Sbjct: 1 MEYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQ 60
Query: 68 QRP-DRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVF 126
Q+ D A++ Y+MA FS +R++ DRRS E+S VI+ +E ++ E+ P + ID+F
Sbjct: 61 QKKNDHAVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIF 120
Query: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
++VLQAD GTR A I AA+LALADAGIPMRDL +C+AG + +LDLN ED+ G AD
Sbjct: 121 LQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGAD 180
Query: 187 VPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKE 236
V V I+P + ++LLQMD L + F LA +G KA+ ++ RE L+E
Sbjct: 181 VTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQE 230
>gi|9506689 hypothetical protein [Homo sapiens] >gi|7020801|dbj|BAA91279.1|
(AK000598) unnamed protein product [Homo sapiens]
>gi|8927590|gb|AAF82134.1|AF281133_1 (AF281133) exosome
component Rrp41 [Homo sapiens]
Length = 245
Score = 183 bits (459), Expect = 2e-45
Identities = 93/223 (41%), Positives = 142/223 (62%), Gaps = 2/223 (0%)
Query: 7 GLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKH 66
GL+L+ + G R+DGR+ ELR I+ +GV A+GSAYIE G K +A VYGP E+
Sbjct: 3 GLELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSR 62
Query: 67 LQR-PDRAILRVRYNMAPFSVEERKK-PGPDRRSIEISKVIKGALEPALILEMFPRTAID 124
+ PDRA++ +Y+ A FS ERK+ P DR+S E+ ++ E A++ ++ PR+ ID
Sbjct: 63 ARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQID 122
Query: 125 VFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGE 184
++++VLQAD GT A + AA+LA+ DAGIPMRD V AC+AG ++G + DL+ E+ G
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGG 182
Query: 185 ADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVY 227
+ +A++P I LL+MD L +D ++ A + A+ V+
Sbjct: 183 PQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVH 225
>gb|AAF53263.1| (AE003639) CG15481 gene product [Drosophila melanogaster]
Length = 246
Score = 148 bits (369), Expect = 7e-35
Identities = 82/232 (35%), Positives = 131/232 (56%), Gaps = 6/232 (2%)
Query: 10 LIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQR 69
L+ E G R+DGR+ +ELR IK ++GV + +GSAY+E G K++AAVYGP + +
Sbjct: 7 LLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTE- 65
Query: 70 PDRAILRVRYNMAPFSVEERK-KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIE 128
+++ +Y+ A FS ERK +P DR+S+E ++ AL A+ E++PR+ ID+++E
Sbjct: 66 ---SVINCQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVE 122
Query: 129 VLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVL-DLNKEEDNYGEADV 187
VLQ D + AA+LAL DAGI + + + AC A + I L D+++ E+ G +
Sbjct: 123 VLQDDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSGGPKL 182
Query: 188 PVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYL 239
VA +P I L+M D ++ A+ G + + A+KE L
Sbjct: 183 TVAALPTAEKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVKEHLL 234
>sp|Q17533|RNPH_CAEEL RIBONUCLEASE PH-LIKE PROTEIN B0564.1 >gi|3873830|emb|CAA97771.3|
(Z73422) Similarity to H.influenza ribonuclease PH
(SW:RNPH_HAEIN), contains similarity to Pfam domain:
PF01138 (3 exoribonuclease family), Score=263.9,
E-value=7.1e-76, N=1~cDNA EST yk198e11.3 comes from this
gene~cDNA EST yk247b6.5 comes from this ge>
Length = 240
Score = 141 bits (351), Expect = 1e-32
Identities = 83/243 (34%), Positives = 139/243 (57%), Gaps = 5/243 (2%)
Query: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHL 67
+ +I E+G RIDGR+ ++R I +G+ +NA GS Y+E G K++ AVYGP E K
Sbjct: 1 MNIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYE--GKSS 58
Query: 68 QR-PDRAILRVRYNMAPFSVEERK-KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDV 125
+R D+ + +Y+ FS ERK + DR+S EIS++++ A E ++ E FPR+ +D+
Sbjct: 59 KRIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDI 118
Query: 126 FIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEA 185
F EV+Q D A + A SLALADAGIPM+ + +A G ++G+ ++DL E+
Sbjct: 119 FCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREETDLLP 178
Query: 186 DVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQEV 245
V +A + ++++ L+++ L D + V A K A + + +++LK +
Sbjct: 179 RVTLATICGRDEVILVELQNRLHIDH-LSTVMDAAKATCADVYECLAVVAQQHLKACAPI 237
Query: 246 EGS 248
G+
Sbjct: 238 LGN 240
>pir||T11740 hypothetical protein - fission yeast (Schizosaccharomyces pombe)
>gi|1749490|dbj|BAA13803.1| (D89141) similar to
Saccharomyces cerevisiae hypothetical 27.6KD protein in
chromosome VII, SWISS-PROT Accession Number P46948
[Schizosaccharomyces pombe]
Length = 242
Score = 126 bits (314), Expect = 2e-28
Identities = 73/230 (31%), Positives = 126/230 (54%), Gaps = 2/230 (0%)
Query: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHL 67
L+++ G R DGR+ E+R + G+ + NGSA+IE G K++ V GP E K
Sbjct: 4 LEILSLEGLRNDGRRWDEMRNFQCRFGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSK 63
Query: 68 QRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKV-IKGALEPALILEMFPRTAIDVF 126
R DR + V N+A FS + KK R I++ + ++ E + E++PR+ I V+
Sbjct: 64 ARADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVY 123
Query: 127 IEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
+ VLQ D + I A +LAL DAGIP++D V AG +E +++LDLN E++ +
Sbjct: 124 LHVLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEES-ALSW 182
Query: 187 VPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKE 236
+ VA++ + +Q++ + D + +AI G++ +Y + A+++
Sbjct: 183 LTVAVLGNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQSAVRQ 232
>pir||T11646 tRNA nucleotidyltransferase homolog - fission yeast
(Schizosaccharomyces pombe) >gi|2706461|emb|CAA15919.1|
(AL021046) putative ribonuclease PH-like
[Schizosaccharomyces pombe]
Length = 242
Score = 126 bits (314), Expect = 2e-28
Identities = 72/229 (31%), Positives = 126/229 (54%), Gaps = 2/229 (0%)
Query: 9 KLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQ 68
+++ G R DGR+ E+R + +G+ + NGSA+IE G K++ V GP E K
Sbjct: 5 EILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKA 64
Query: 69 RPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKV-IKGALEPALILEMFPRTAIDVFI 127
R DR + V N+A FS + KK R I++ + ++ E + E++PR+ I V++
Sbjct: 65 RADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYL 124
Query: 128 EVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADV 187
VLQ D + I A +LAL DAGIP++D V AG +E +++LDLN E++ + +
Sbjct: 125 HVLQDDGAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEES-ALSWL 183
Query: 188 PVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKE 236
VA++ + +Q++ + D + +AI G++ +Y + A+++
Sbjct: 184 TVAVLGNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQSAVRQ 232
>gi|6321634 homolog of RNAse PH; Ski6p [Saccharomyces cerevisiae]
>gi|1176073|sp|P46948|RR41_YEAST RRP41 PROTEIN
>gi|2132624|pir||S59180 probable membrane protein
YGR195w - yeast (Saccharomyces cerevisiae)
>gi|791127|emb|CAA58018.1| (X82775) G7587 [Saccharomyces
cerevisiae] >gi|1323347|emb|CAA97221.1| (Z72980) ORF
YGR195w [Saccharomyces cerevisiae]
Length = 246
Score = 115 bits (285), Expect = 5e-25
Identities = 78/240 (32%), Positives = 124/240 (51%), Gaps = 8/240 (3%)
Query: 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNA-NGSAYIEWGKNKIIAAVYGPRELHPKH 66
L++ G R+DGR+ ELR + + +A +GS+Y+E G NKII V GP+E K
Sbjct: 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKS 63
Query: 67 LQRPDRAILRVRYNMAPFSVEERKKPGP--DRRSIEISKVIKGALEPALILEMFPRTAID 124
+A+L V N+ FS ER K +RR +EI + E ++L ++PRT ID
Sbjct: 64 QMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVID 123
Query: 125 VFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGE 184
+ I VL+ D G + I +LAL DAGI M D ++ + G + +LD N E+N
Sbjct: 124 IEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN-AM 182
Query: 185 ADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQE 244
+ V + ++ ++LL ++ + D + + I GA V R+ + E+ K AQ+
Sbjct: 183 STVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRV----RDLMDEELRKHAQK 238
>pir||E70320 polyribonucleotide nucleotidyltransferase - Aquifex aeolicus
>gi|2982946|gb|AAC06562.1| (AE000679) polyribonucleotide
nucleotidyltransferase [Aquifex aeolicus]
Length = 775
Score = 99.8 bits (245), Expect = 3e-20
Identities = 84/247 (34%), Positives = 125/247 (50%), Gaps = 34/247 (13%)
Query: 13 ENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDR 72
+ G RIDGRK E+RPI +EV + +G+A G+ + V L PD
Sbjct: 309 KEGVRIDGRKPNEIRPIWIEVHPFERPHGNAIFTRGQTQAYVTVT---------LGTPDE 359
Query: 73 AIL-------------RVRYNMAPFSVEERKKPGPDRR-SIEISKVIKGALEPALILEMF 118
A++ + Y+M PFSV E K GP RR I + + A+EP L E
Sbjct: 360 ALIIETIAEGEVFKRFMLHYSMPPFSVGEAKPWGPPRRREIGHGALAERAIEPLLPPEEE 419
Query: 119 PRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRD--LVAACAAGKIEGE----IV 172
I V ++L+++ T +A + ASLAL DAG+PM+D VA A G I + I+
Sbjct: 420 YPFIIRVVSDILESNGSTSMATVCGASLALFDAGVPMKDNKHVAGIAMGLILEKDRYVIL 479
Query: 173 LDLNKEEDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAVYQK 229
D+ +ED+ G+ D VA K+ IT +QMD +TK+ ++A+K A +G + +K
Sbjct: 480 SDILGDEDHLGDMDFKVA--GTKDGITSVQMDIKVKGITKEIMLDALKQAREGRLYILEK 537
Query: 230 QREALKE 236
EA+ E
Sbjct: 538 MYEAIPE 544
>sp|O67069|RNPH_AQUAE RIBONUCLEASE PH (RNASE PH) (TRNA NUCLEOTIDYLTRANSFERASE)
>gi|7435289|pir||B70380 tRNA nucleotidyltransferase (EC
2.7.7.56) - Aquifex aeolicus >gi|2983451|gb|AAC07032.1|
(AE000714) RNase PH [Aquifex aeolicus]
Length = 255
Score = 99.5 bits (244), Expect = 3e-20
Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 19/234 (8%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
R DGRK+ +LRP+ ++ L+ GS I +GK K+I E P L+ + +
Sbjct: 2 RSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTA-SVIENVPNWLKGKGQGWIT 60
Query: 77 VRYNMAPFSVEER--KKPGPDR---RSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Y+M P + ++R ++ R R+ EI ++I A+ A+ L I V +V+Q
Sbjct: 61 AEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQ 120
Query: 132 ADAGTRVAGITAASLALADAGI-----------PMRDLVAACAAGKIEGEIVLDLNKEED 180
AD GTR A IT A +A+ADA I P++D VAA + G + I+LDLN EED
Sbjct: 121 ADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVNDRILLDLNFEED 180
Query: 181 NYGEADVPV--AIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQRE 232
+ + D+ V +++ + + TKDE I+ + LA KG + + Q++
Sbjct: 181 SAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKK 234
>pir||D82978 ribonuclease PH PA5334 [imported] - Pseudomonas aeruginosa (strain
PAO1) >gi|9951653|gb|AAG08719.1|AE004946_3 (AE004946)
ribonuclease PH [Pseudomonas aeruginosa]
Length = 239
Score = 99.1 bits (243), Expect = 4e-20
Identities = 76/241 (31%), Positives = 118/241 (48%), Gaps = 25/241 (10%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
R GR +LRPI++ K+A GS +E+G K+I V + P+ L+ + L
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGV-PRFLKGQGQGWLT 61
Query: 77 VRYNMAPFSVEERKKPGPDR-----RSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Y M P S ER + R R++EI ++I +L AL L + + +V+Q
Sbjct: 62 AEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQ 121
Query: 132 ADAGTRVAGITAASLALADA-----------GIPMRDLVAACAAGKIEGEIVLDLNKEED 180
AD GTR A IT A++AL DA G P++ +VAA + G +G VLDL+ ED
Sbjct: 122 ADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLED 181
Query: 181 NYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEA-----VKLAIKGAKAVYQKQREALK 235
+ E D+ V + +++ G F A ++LA +G + +++ QR AL
Sbjct: 182 SAAETDLNVVMTDAGG---FIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALA 238
Query: 236 E 236
E
Sbjct: 239 E 239
>sp|P03842|RNPH_ECOLI RIBONUCLEASE PH (RNASE PH) (TRNA NUCLEOTIDYLTRANSFERASE)
Length = 238
Score = 94.0 bits (230), Expect = 1e-18
Identities = 71/236 (30%), Positives = 111/236 (46%), Gaps = 25/236 (10%)
Query: 20 GRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRY 79
GR ++RP+ + K+A GS +E+G K++ E P+ L+ + + Y
Sbjct: 5 GRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTA-SIEEGVPRFLKGQGQGWITAEY 63
Query: 80 NMAPFSVEERK-----KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADA 134
M P S R K R++EI ++I AL A+ L+ I + +VLQAD
Sbjct: 64 GMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG 123
Query: 135 GTRVAGITAASLALADA-----------GIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG 183
GTR A IT A +AL DA PM+ +VAA + G + GE V DL ED+
Sbjct: 124 GTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAA 183
Query: 184 EADVPVAIMPLKNDITLLQMDGY-----LTKDEFIEAVKLAIKGAKAVYQKQREAL 234
E D+ V + D ++++ G T +E + + LA G +++ Q+ AL
Sbjct: 184 ETDMNVV---MTEDGRIIEVQGTAEGEPFTHEELLILLALARGGIESIVATQKAAL 236
>sp|P50597|RNPH_PSEAE RIBONUCLEASE PH (RNASE PH) (TRNA NUCLEOTIDYLTRANSFERASE)
>gi|1079663|gb|AAC44429.1| (U38241) RNase PH
[Pseudomonas aeruginosa]
Length = 239
Score = 93.6 bits (229), Expect = 2e-18
Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 25/241 (10%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
R GR +LRPI++ K+A GS +E+G K+I V + P+ L+ + L
Sbjct: 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGV-PRFLKGQGQGWLT 61
Query: 77 VRYNMAPFSVEERKKPGPDR-----RSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Y M S ER + R R++EI ++I +L AL L + + +V+Q
Sbjct: 62 AEYGMLRRSTGERNQREASRGKQGGRTLEIQRLIDRSLRAALDLSKLGENTLYIDCDVIQ 121
Query: 132 ADAGTRVAGITAASLALADA-----------GIPMRDLVAACAAGKIEGEIVLDLNKEED 180
D GTR A IT A+++L DA G P++ +VAA + G +G VLDL+ ED
Sbjct: 122 TDGGTRTASITGATVSLIDALAVLKKRVALKGNPLKQIVAAVSVGIYQGVPVLDLDYLED 181
Query: 181 NYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEA-----VKLAIKGAKAVYQKQREALK 235
+ E+D+ V + + +++ G F A ++LA +G + + + QR AL
Sbjct: 182 SAAESDLNVVMTDCRR---FIEVQGTAEGAPFRPAELNAMLELAQQGMQELVRTQRAALA 238
Query: 236 E 236
E
Sbjct: 239 E 239
>sp|P44444|RNPH_HAEIN RIBONUCLEASE PH (RNASE PH) (TRNA NUCLEOTIDYLTRANSFERASE)
>gi|1075223|pir||A64059 tRNA nucleotidyltransferase (EC
2.7.7.56) - Haemophilus influenzae (strain Rd KW20)
>gi|1573239|gb|AAC21939.1| (U32713) ribonuclease PH
(rph) [Haemophilus influenzae Rd]
Length = 238
Score = 93.2 bits (228), Expect = 3e-18
Identities = 70/239 (29%), Positives = 118/239 (49%), Gaps = 25/239 (10%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
R + R+ + R IK+ K+A GS +E+G K++ + P+ L+ + +
Sbjct: 2 RPNNRENNQPRQIKITRNYTKHAEGSVLVEFGDTKVLCTAT-VEDAVPRFLKGQGQGWVT 60
Query: 77 VRYNMAPFSVEERK-----KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Y M P S R K R++EI ++I +L + L+ AI + +V+Q
Sbjct: 61 AEYGMLPRSTHSRMQREAAKGKQGGRTMEIQRLIARSLRAMVDLKALGERAITLDCDVIQ 120
Query: 132 ADAGTRVAGITAASLALADA--GI---------PMRDLVAACAAGKIEGEIVLDLNKEED 180
AD GTR A IT A++AL DA G+ P++ LV+A + G ++G+ V DL ED
Sbjct: 121 ADGGTRTASITGAAVALCDAINGLIENGTLKTNPIKGLVSAISVGIVDGQAVCDLEYVED 180
Query: 181 NYGEADVPVAIMPLKNDITLLQMDGY-----LTKDEFIEAVKLAIKGAKAVYQKQREAL 234
+ E D+ V +M D ++++ G + +E + + LA +G ++ QREAL
Sbjct: 181 SAAETDMNVVMM---EDGRMIEVQGTAEGEPFSHEELLTLLDLAKQGCNQIFIAQREAL 236
>pir||QQECPE tRNA nucleotidyltransferase (EC 2.7.7.56) - Escherichia coli
>gi|499181|emb|CAA25357.1| (X00781) unidentified reading
frame (orfE) [Escherichia coli]
Length = 238
Score = 92.4 bits (226), Expect = 4e-18
Identities = 71/236 (30%), Positives = 111/236 (46%), Gaps = 25/236 (10%)
Query: 20 GRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRY 79
GR ++RP+ + K+A GS +E+G K++ E P+ L+ + + Y
Sbjct: 5 GRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTA-SIEEGVPRFLKGQGQGWITAEY 63
Query: 80 NMAPFSVEERK-----KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADA 134
M P S R K R++EI ++I AL A+ L+ I + +VLQADA
Sbjct: 64 GMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADA 123
Query: 135 GTRVAGITAASLALADA-----------GIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG 183
TR A IT A +AL DA PM+ +VAA + G + GE V DL ED+
Sbjct: 124 WTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAA 183
Query: 184 EADVPVAIMPLKNDITLLQMDGY-----LTKDEFIEAVKLAIKGAKAVYQKQREAL 234
E D+ V + D ++++ G T +E + + LA G +++ Q+ AL
Sbjct: 184 ETDMNVV---MTEDGRIIEVQGTAEGEPFTHEELLILLALARGGIESIVATQKAAL 236
>pir||A72264 polynucleotide phosphorylase - Thermotoga maritima (strain MSB8)
>gi|4981905|gb|AAD36416.1|AE001789_1 (AE001789)
polynucleotide phosphorylase [Thermotoga maritima]
Length = 708
Score = 91.7 bits (224), Expect = 8e-18
Identities = 76/208 (36%), Positives = 107/208 (50%), Gaps = 18/208 (8%)
Query: 9 KLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQ 68
+LI E G R DGRK E+RPI EVG+ +GSA G+ + + V P +Q
Sbjct: 309 RLIVEKGIRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGA---PMDVQ 365
Query: 69 RPDRAI------LRVRYNMAPFSVEERKK-PGPDRRSIEISKVIKGALEPALILEM-FPR 120
D + + YN PF E K GP RR I + + AL+ L E FP
Sbjct: 366 IIDTLLEEGVKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPEEEFPY 425
Query: 121 TAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI---EGEIVL-DLN 176
T I V E+L+++ + +A + + SLAL DAG+P++ VA A G I + EI+L D+
Sbjct: 426 T-IRVVSEILESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEIILTDII 484
Query: 177 KEEDNYGEADVPVAIMPLKNDITLLQMD 204
ED+YG+ D VA ++ IT QMD
Sbjct: 485 GMEDHYGDMDFKVA--GTRDGITAFQMD 510
>emb|CAB06341.1| (Z84207) polynucleotide phosphorylase [Thermus thermophilus]
Length = 713
Score = 91.3 bits (223), Expect = 1e-17
Identities = 78/220 (35%), Positives = 112/220 (50%), Gaps = 15/220 (6%)
Query: 9 KLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAV---YGPRELHPK 65
+L+ E G+R DGR +LRPI +EV VL A+GSA G+ +++ V G E
Sbjct: 319 RLVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQILD 378
Query: 66 HLQRPDRAILRVRYNMAPFSV-EERKKPGPDRRSIEISKVIKGALEPALILEM-FPRTAI 123
L + V YN PFS E R+ G RR + + K AL+ + E FP T I
Sbjct: 379 DLGIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMPKEEDFPYT-I 437
Query: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGE----IVLDLNKEE 179
V +VL+++ + +A + A LAL DAG+P+R VA A G + E I+ D+ E
Sbjct: 438 RVVGDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAVILTDILGLE 497
Query: 180 DNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAV 216
D G+ D VA + +T LQMD G L ++ EA+
Sbjct: 498 DALGDMDFKVA--GTRKGVTALQMDNKVGGLPREVLKEAL 535
>gb|AAF72714.1|AF263927_2 (AF263927) ribonuclease PH [Carnobacterium sp. St2]
Length = 364
Score = 90.9 bits (222), Expect = 1e-17
Identities = 77/247 (31%), Positives = 121/247 (48%), Gaps = 24/247 (9%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIA-AVYGPRELHPKHLQRPDRAIL 75
R + RK ELR + +E LK+ GS + +G K+I A P+ P ++ + +
Sbjct: 2 RTNTRKNDELRLVTIETNYLKHPEGSVLVSFGDTKVICNATVEPKV--PPFMRGQGKGWV 59
Query: 76 RVRYNMAPFS-----VEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVL 130
Y M P + + E K R++EI ++I +L + LE AI V +V+
Sbjct: 60 HAEYAMLPRATNTRTIREAAKGKLTGRTMEIQRLIARSLRSVIDLEKLGERAITVDCDVI 119
Query: 131 QADAGTRVAGITAASLA-------LADAG----IPMRDLVAACAAG-KIEGEIVLDLNKE 178
QAD GTR A IT A +A L D+G P+++ +AA + G +GE VLDL+
Sbjct: 120 QADGGTRTASITGAFVALKMAIQTLLDSGQLTEDPVKENIAAVSVGITKQGEAVLDLDYL 179
Query: 179 EDNYGEADVPVAIMPLKNDITLLQMDG---YLTKDEFIEAVKLAIKGAKAVYQKQREALK 235
ED+ D+ + M + LQ G + D+ +E ++L KG ++Q Q +ALK
Sbjct: 180 EDSSAAVDMNL-FMTANGEFFELQGTGEEATFSNDQLMEMLELGKKGLNELFQIQTQALK 238
Query: 236 EKYLKIA 242
E +K A
Sbjct: 239 ESKVKKA 245
>gb|AAA61996.1| (L10328) RNase PH [Escherichia coli] >gi|1790074|gb|AAC76667.1|
(AE000441) RNase PH [Escherichia coli K12]
Length = 228
Score = 88.5 bits (216), Expect = 7e-17
Identities = 64/209 (30%), Positives = 98/209 (46%), Gaps = 20/209 (9%)
Query: 20 GRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRY 79
GR ++RP+ + K+A GS +E+G K++ E P+ L+ + + Y
Sbjct: 5 GRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTA-SIEEGVPRFLKGQGQGWITAEY 63
Query: 80 NMAPFSVEERK-----KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADA 134
M P S R K R++EI ++I AL A+ L+ I + +VLQAD
Sbjct: 64 GMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAVDLKALGEFTITLDCDVLQADG 123
Query: 135 GTRVAGITAASLALADA-----------GIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG 183
GTR A IT A +AL DA PM+ +VAA + G + GE V DL ED+
Sbjct: 124 GTRTASITGACVALVDALQKLVENGKLKTNPMKGMVAAVSVGIVNGEAVCDLEYVEDSAA 183
Query: 184 EADVPVAIMPLKNDITLLQMDGYLTKDEF 212
E D+ V + D ++++ G + F
Sbjct: 184 ETDMNVV---MTEDGRIIEVQGTAEGEPF 209
>sp|P28619|RNPH_BACSU RIBONUCLEASE PH (RNASE PH) (TRNA NUCLEOTIDYLTRANSFERASE)
>gi|143444|gb|AAA22705.1| (M85163) RNase PH [Bacillus
subtilis] >gi|1770059|emb|CAA99554.1| (Z75208) RNase PH
[Bacillus subtilis] >gi|2635302|emb|CAB14797.1| (Z99118)
ribonuclease PH [Bacillus subtilis]
Length = 245
Score = 87.8 bits (214), Expect = 1e-16
Identities = 77/238 (32%), Positives = 113/238 (47%), Gaps = 22/238 (9%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
R DGR+ ELRPI ++ + + GS I G K+I + P L+ + +
Sbjct: 2 RHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNA-SVEDRVPPFLRGGGKGWIT 60
Query: 77 VRYNMAPFSVEER-----KKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Y+M P + +R K R++EI ++I AL + LE I + +V+Q
Sbjct: 61 AEYSMLPRATNQRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120
Query: 132 ADAGTRVAGITAASLALA-------DAGI----PMRDLVAACAAG-KIEGEIVLDLNKEE 179
AD GTR A IT A LA+A AG P+ D +AA + G E I+LDLN EE
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQGILLDLNYEE 180
Query: 180 DNYGEADVPVAIMPLKNDITLLQMDG---YLTKDEFIEAVKLAIKGAKAVYQKQREAL 234
D+ E D+ V IM LQ G ++++ + LA KG + + KQ+E L
Sbjct: 181 DSSAEVDMNV-IMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVL 237
>sp|Q10628|RNPH_MYCTU PROBABLE RIBONUCLEASE PH (RNASE PH) (TRNA NUCLEOTIDYLTRANSFERASE)
>gi|7435288|pir||C70739 probable rphA protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|1419043|emb|CAA99973.1| (Z75555) rphA [Mycobacterium
tuberculosis]
Length = 259
Score = 87.8 bits (214), Expect = 1e-16
Identities = 72/245 (29%), Positives = 111/245 (44%), Gaps = 26/245 (10%)
Query: 16 RRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAIL 75
+R DGR +ELRP+ + G +N GS IE+G K++ E P+ + L
Sbjct: 3 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTA-SVTEGVPRWRKATGLGWL 61
Query: 76 RVRYNMAPFSVEERKKPGPDR-----RSIEISKVIKGALEPALILEMFPRTAIDVFIEVL 130
Y M P + R R R+ EIS++I +L + L I + +VL
Sbjct: 62 TAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVL 121
Query: 131 QADAGTRVAGITAASLALADAGI------------PMRDLVAACAAGKIEGEIVLDLNKE 178
QAD GTR A IT A +ALADA P+ +AA + G ++G I +DL E
Sbjct: 122 QADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYE 181
Query: 179 EDNYGEADVPVAIMPLKNDITLLQMDG-----YLTKDEFIEAVKLAIKGAKAVYQKQREA 233
ED+ E D+ V + TL+++ G + + + +A+ ++ QR+A
Sbjct: 182 EDSRAEVDMNVV---ATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDA 238
Query: 234 LKEKY 238
L Y
Sbjct: 239 LALPY 243
>sp|O87792|PNP_PSEPU POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (POLYNUCLEOTIDE
PHOSPHORYLASE) (PNPASE) >gi|3650364|emb|CAA77048.1|
(Y18132) polyribonucleotide nucleotidyltransferase
[Pseudomonas putida]
Length = 701
Score = 87.4 bits (213), Expect = 1e-16
Identities = 68/201 (33%), Positives = 109/201 (53%), Gaps = 13/201 (6%)
Query: 14 NGR-RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNK--IIAAVYGPRELHPKH-LQR 69
NG+ RIDGR +RP+ +EVGVL +GSA G+ + ++A + R+ L+
Sbjct: 312 NGKPRIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTARDAQLLDTLEG 371
Query: 70 PDRAILRVRYNMAPFSVEE-RKKPGPDRRSIEISKVIKGALEPAL-ILEMFPRTAIDVFI 127
+ + YN PFSV E + G RR I ++ + +++ L ++FP T I V
Sbjct: 372 EKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAADVFPYT-IRVVS 430
Query: 128 EVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYG 183
E+ +++ + +A + ASLAL DAG+PM+ VA A G + EG+ ++ D+ +ED+ G
Sbjct: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLTDILGDEDHLG 490
Query: 184 EADVPVAIMPLKNDITLLQMD 204
+ D VA +T LQMD
Sbjct: 491 DMDFKVA--GTAKGVTALQMD 509
>pir||C83052 polyribonucleotide nucleotidyltransferase PA4740 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9951002|gb|AAG08126.1|AE004888_1 (AE004888)
polyribonucleotide nucleotidyltransferase [Pseudomonas
aeruginosa]
Length = 701
Score = 87.4 bits (213), Expect = 1e-16
Identities = 72/203 (35%), Positives = 110/203 (53%), Gaps = 17/203 (8%)
Query: 14 NGR-RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNK--IIAAVYGPRE---LHPKHL 67
NG+ RIDGR +RP+++EVGVL +GSA G+ + ++A + R+ L
Sbjct: 312 NGKPRIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTARDAQLLDTLEG 371
Query: 68 QRPDRAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTAIDV 125
+R D +L YN PFSV E + G P RR I ++ + + L + FP T I V
Sbjct: 372 ERKDAFMLH--YNFPPFSVGECGRMGSPGRREIGHGRLARRGVAAMLPTQDEFPYT-IRV 428
Query: 126 FIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDN 181
E+ +++ + +A + ASLAL DAG+P++ VA A G + EGE ++ D+ +ED+
Sbjct: 429 VSEITESNGSSSMASVCGASLALMDAGVPVKAPVAGIAMGLVKEGEKFAVLTDILGDEDH 488
Query: 182 YGEADVPVAIMPLKNDITLLQMD 204
G+ D VA +T LQMD
Sbjct: 489 LGDMDFKVA--GTDKGVTALQMD 509
>dbj|BAB06787.1| (AP001517) ribonuclease PH [Bacillus halodurans]
Length = 257
Score = 87.0 bits (212), Expect = 2e-16
Identities = 74/239 (30%), Positives = 116/239 (47%), Gaps = 24/239 (10%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
R+D RK ELRPI +E+ L + GS I G K+I + P L+ + +
Sbjct: 2 RMDERKADELRPISIEINYLHHPEGSVLISIGNTKVICTA-SLEDRVPPFLRGQGKGWIT 60
Query: 77 VRYNMAPFSVEERKKPGPDR-----RSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Y+M P + E+R R R++EI ++I AL + L+ + + +V+Q
Sbjct: 61 AEYSMLPRATEQRNMRESTRGKVSGRTMEIQRLIGRALRSIIDLDKIGERTVWIDCDVIQ 120
Query: 132 ADAGTRVAGITAASL--------ALADAGI---PMRDLVAACAAGKIEGEI--VLDLNKE 178
AD GTR IT A + ALA+ I P+ D +AA + G I+ ++ +LDL
Sbjct: 121 ADGGTRTTSITGAFVALSLAMEKALANGAIQEWPIDDFLAAVSVG-IDPKLGAILDLCYA 179
Query: 179 EDNYGEADVPVAIMPLKNDITLLQMDG---YLTKDEFIEAVKLAIKGAKAVYQKQREAL 234
ED E D+ V +M K + LQ G + ++ + + LA KG K + ++QR AL
Sbjct: 180 EDAQAEVDMNV-VMTGKGEYVELQGTGEEATFSHNQLLTILALADKGIKQLIEEQRNAL 237
>pir||A44914 tRNA nucleotidyltransferase (EC 2.7.7.56) - Bacillus subtilis
Length = 245
Score = 86.6 bits (211), Expect = 3e-16
Identities = 77/238 (32%), Positives = 112/238 (46%), Gaps = 22/238 (9%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
R DGR ELRPI ++ + + GS I G K+I + P L+ + +
Sbjct: 2 RHDGRGHDELRPITFDLDFISHPEGSVLITAGNTKVICNA-SVEDRVPPFLRGGGKGWIT 60
Query: 77 VRYNMAPFS-----VEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Y+M P + + E K R++EI ++I AL + LE I + +V+Q
Sbjct: 61 AEYSMLPRATNGRTIRESSKGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQ 120
Query: 132 ADAGTRVAGITAASLALA-------DAGI----PMRDLVAACAAG-KIEGEIVLDLNKEE 179
AD GTR A IT A LA+A AG P+ D +AA + G E I+LDLN EE
Sbjct: 121 ADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLAAISVGIDKEQGILLDLNYEE 180
Query: 180 DNYGEADVPVAIMPLKNDITLLQMDG---YLTKDEFIEAVKLAIKGAKAVYQKQREAL 234
D+ E D+ V IM LQ G ++++ + LA KG + + KQ+E L
Sbjct: 181 DSSAEVDMNV-IMTGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVL 237
>pir||G81332 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) Cj1253
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968686|emb|CAB73507.1| (AL139077)
polyribonucleotide nucleotidyltransferase [Campylobacter
jejuni]
Length = 719
Score = 85.8 bits (209), Expect = 4e-16
Identities = 78/245 (31%), Positives = 119/245 (47%), Gaps = 21/245 (8%)
Query: 9 KLIDEN----GRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNK--IIAAVYGPREL 62
KLI E G+R DGR E+RPI +E +L NA+GS G+ + ++A + G +
Sbjct: 324 KLIREQILNEGKRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDS 383
Query: 63 HPKHL---QRPDRAILRVRYNMAPFSVEERKK-PGPDRRSIEISKVIKGALEPALILEMF 118
L + P V YN FSV E P RR + + K AL P+ + E +
Sbjct: 384 QMIDLLTEKNPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPS-VDENY 442
Query: 119 PRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI----EGEIVLD 174
P I + E+L+++ + +A + SLAL AG+P LVA A G I + ++ D
Sbjct: 443 P-YVIRLVSEILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTD 501
Query: 175 LNKEEDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAVYQKQR 231
+ ED+ G+ D VA K+ +T LQMD G + ++ +A+ A +G +
Sbjct: 502 IMGLEDHDGDMDFKVA--GSKDGVTALQMDIKLGGIDQEILKQALYQAKEGRIHILNIME 559
Query: 232 EALKE 236
EA KE
Sbjct: 560 EAAKE 564
>sp|P37939|RNPH_MYCLE PROBABLE RIBONUCLEASE PH (RNASE PH) (TRNA NUCLEOTIDYLTRANSFERASE)
>gi|2145985|pir||S72788 tRNA nucleotidyltransferase (EC
2.7.7.56) - Mycobacterium leprae
>gi|466905|gb|AAA50880.1| (U00014) rnpH; ribonuclease
PH; B1549_C1_182 [Mycobacterium leprae]
Length = 259
Score = 85.4 bits (208), Expect = 6e-16
Identities = 72/250 (28%), Positives = 114/250 (44%), Gaps = 26/250 (10%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
R DGR ELR + + G ++ GS IE+G K++ P E P+ + + L
Sbjct: 4 RADGRLDDELRAVVITRGFTEHPAGSVLIEFGHTKVMCTA-SPTEGVPRWRKGSGKGWLT 62
Query: 77 VRYNMAPFSVEERK-----KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Y M P + R K R+ EIS++I +L + L I V +VLQ
Sbjct: 63 AEYAMLPSATHTRSERESVKGRLSGRTQEISRLIGRSLRACIDLAALGENTIAVDCDVLQ 122
Query: 132 ADAGTRVAGITAASLALADAGI------------PMRDLVAACAAGKIEGEIVLDLNKEE 179
AD GTR A +T A +ALADA P+ +AA + G ++G I +DL+ EE
Sbjct: 123 ADGGTRTAAVTGAYVALADAVTYLSAAGRLLDPRPLSCAIAAVSVGVVDGRIRVDLSYEE 182
Query: 180 DNYGEADVPVAIMPLKNDITLLQMDG-----YLTKDEFIEAVKLAIKGAKAVYQKQREAL 234
D+ E D+ V + TL+++ G + + + +A+ ++ QR+AL
Sbjct: 183 DSRAEVDMNVI---ATDTGTLVEIQGTGEGATFPRSTLDKLLDMALGACDKLFVAQRDAL 239
Query: 235 KEKYLKIAQE 244
Y ++ E
Sbjct: 240 ALPYQGMSPE 249
>sp|P50849|PNPA_BACSU POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (POLYNUCLEOTIDE
PHOSPHORYLASE) (PNPASE) (VEGETATIVE PROTEIN 15) (VEG15)
>gi|2127172|pir||S70691 polyribonucleotide
nucleotidyltransferase (EC 2.7.7.8) alpha chain pnpA -
Bacillus subtilis >gi|1184680|gb|AAC43595.1| (U29668)
polynucleotide phosphorylase [Bacillus subtilis]
>gi|2634041|emb|CAB13542.1| (Z99112) polynucleotide
phosphorylase (PNPase) [Bacillus subtilis]
>gi|1589234|prf||2210369A polynucleotide phosphorylase
[Bacillus subtilis]
Length = 705
Score = 84.7 bits (206), Expect = 1e-15
Identities = 79/254 (31%), Positives = 126/254 (49%), Gaps = 19/254 (7%)
Query: 4 KPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIA-----AVYG 58
K E +LI E R DGR ++RP+ EVG+L +GS G+ + ++ A+
Sbjct: 303 KNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGALGD 362
Query: 59 PRELHPKHLQRPDRAILRVRYNMAPFSVEER-KKPGPDRRSIEISKVIKGALEPALILEM 117
+ L ++ R + YN FSV E GP RR I + + ALEP + E
Sbjct: 363 VQILDGLGVEESKRFMHH--YNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEK 420
Query: 118 -FPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIE-GE---IV 172
FP T + + EVL+++ T A I A++LA+ DAG+P++ VA A G ++ GE ++
Sbjct: 421 DFPYT-VRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEHYTVL 479
Query: 173 LDLNKEEDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAVYQK 229
D+ ED G+ D VA + +T LQMD L+++ EA++ A KG +
Sbjct: 480 TDIQGMEDALGDMDFKVA--GTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNS 537
Query: 230 QREALKEKYLKIAQ 243
L E ++++
Sbjct: 538 MLATLSESRKELSR 551
>sp|P57454|PNP_BUCAI POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (POLYNUCLEOTIDE
PHOSPHORYLASE) (PNPASE) >gi|10039043|dbj|BAB13077.1|
(AP001119) polyribonucleotide nucleotidyltransferase
[Buchnera sp. APS]
Length = 707
Score = 84.7 bits (206), Expect = 1e-15
Identities = 71/214 (33%), Positives = 109/214 (50%), Gaps = 16/214 (7%)
Query: 2 MEKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRE 61
+EK K I N RIDGR+K +R + + G+L +GSA G+ + + +V
Sbjct: 300 IEKKVVRKRILSNQTRIDGREKDMIRALDVRTGILPRTHGSALFTRGETQSLVSVTLGTS 359
Query: 62 LHPKHLQ-----RPDRAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-I 114
++L R D + YN P+SV E G P RR I ++ K +L +
Sbjct: 360 RDAQNLDELLGDRIDNFLFH--YNFPPYSVGEIGMVGSPKRREIGHGRLAKRSLLAVMPT 417
Query: 115 LEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE--- 170
LE FP T I V E+ +++ + +A + ASLAL DAG+P++ VA + G + EG
Sbjct: 418 LENFPYT-IRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGISMGLVKEGNQHV 476
Query: 171 IVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMD 204
++ D+ +ED+ G+ D VA + IT LQMD
Sbjct: 477 LLSDILGDEDHLGDMDFKVA--GTEEGITALQMD 508
>dbj|BAB06126.1| (AP001515) polynucleotide phosphorylase [Bacillus halodurans]
Length = 704
Score = 84.3 bits (205), Expect = 1e-15
Identities = 76/247 (30%), Positives = 121/247 (48%), Gaps = 19/247 (7%)
Query: 4 KPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIA-----AVYG 58
K E +LI R DGR+ E+RP+ +VG+L +GS G+ + ++ A+
Sbjct: 301 KEEVRRLITVEKIRPDGREIDEIRPLSSQVGILPRTHGSGLFTRGQTQALSICTLGALGD 360
Query: 59 PRELHPKHLQRPDRAILRVRYNMAPFSVEERKK-PGPDRRSIEISKVIKGALEPALILEM 117
+ L ++ R + YN FSV E GP RR I + + ALEP + E
Sbjct: 361 VQILDGLGIEESKRFMHH--YNFPQFSVGETGPIRGPGRREIGHGALGERALEPVIPSEQ 418
Query: 118 -FPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGE----IV 172
FP T I + EVL+++ T A I A++LA+ DAG+P++ VA A G ++ + ++
Sbjct: 419 DFPYT-IRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKQDEHVSVL 477
Query: 173 LDLNKEEDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAVYQK 229
D+ ED G+ D VA + +T LQMD + + +A++ A KG +
Sbjct: 478 TDIQGMEDALGDMDFKVA--GTRKGVTALQMDIKISGIDRAILEQALEQARKGRMIILDN 535
Query: 230 QREALKE 236
EA+ E
Sbjct: 536 MLEAISE 542
>pir||S74509 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) alpha chain
- Synechocystis sp. (strain PCC 6803)
>gi|1651733|dbj|BAA16661.1| (D90899) polyribonucleotide
nucleotidyltransferase [Synechocystis sp.]
Length = 718
Score = 82.7 bits (201), Expect = 4e-15
Identities = 78/247 (31%), Positives = 120/247 (48%), Gaps = 27/247 (10%)
Query: 9 KLIDENGRRIDGRKKYELRPIKMEVGVL-KNANGSAYIEWGKNKIIA-AVYGPR------ 60
K I ++G R+DGRK ++RPI EVG L + +GS G ++++ A G
Sbjct: 316 KQIVDDGVRVDGRKLEQVRPISCEVGFLPRRVHGSGLFNRGLTQVLSLATLGSPGDAQDL 375
Query: 61 --ELHPKHLQRPDRAILRVRYNMAPFSV-EERKKPGPDRRSIEISKVIKGALEPALI-LE 116
+LHP+ +R YN P+SV E R P RR I + + A+ P L E
Sbjct: 376 ADDLHPEDEKR-----YLHHYNFPPYSVGEARPMRSPGRREIGHGALAERAIIPVLPPQE 430
Query: 117 MFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IV 172
FP + V EVL ++ T + + ++LAL DAG+P++ V+ A G I EG+ I+
Sbjct: 431 DFPYV-VRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIKKPVSGAAMGLIKEGDEIRIL 489
Query: 173 LDLNKEEDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAVYQK 229
D+ ED G+ D VA + IT LQMD L+ + +A+ A+ + K
Sbjct: 490 TDIQGIEDFLGDMDFKVA--GTDSGITALQMDMKIDGLSMEVVSKAIMQALPARLHILDK 547
Query: 230 QREALKE 236
++E
Sbjct: 548 MLATIRE 554
>pir||T36127 probable ribonuclease PH - Streptomyces coelicolor
>gi|5531353|emb|CAB50985.1| (AL096852) putative
ribonuclease PH [Streptomyces coelicolor A3(2)]
Length = 245
Score = 82.7 bits (201), Expect = 4e-15
Identities = 71/245 (28%), Positives = 109/245 (43%), Gaps = 35/245 (14%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
RIDGR +LRP+ +E G K+A GS + +G K++ E P+ + +
Sbjct: 3 RIDGRTPQQLRPVTIERGWSKHAEGSVLVSFGDTKVLCNA-SVTEGVPRWRKGSGEGWVT 61
Query: 77 VRYNMAPFSVEERKKPGPDRRSI---------EISKVIKGALEPALILEMFPRTAIDVFI 127
Y M P + R DR S+ EIS++I +L + + + +
Sbjct: 62 AEYAMLPRATNTRG----DRESVKGRIGGRTHEISRLIGRSLRAVIDYKALGENTVVLDC 117
Query: 128 EVLQADAGTRVAGITAASLALADAGI-------------PMRDLVAACAAGKIEGEIVLD 174
+VLQAD GTR A IT A +ALADA P+ V+A + G ++G +LD
Sbjct: 118 DVLQADGGTRTAAITGAYVALADAVAWAQGRKLIKANRKPLTGTVSAVSVGIVDGTPLLD 177
Query: 175 LNKEEDNYGEADVPVAIMPLKNDITLLQMDGY-----LTKDEFIEAVKLAIKGAKAVYQK 229
L EED + D+ V D +++ G +DE + LA G + +
Sbjct: 178 LRYEEDVRADTDMNVV---CTGDGRFVEVQGTAEAEPFARDELNTLLDLATAGCTELAEL 234
Query: 230 QREAL 234
QR+AL
Sbjct: 235 QRKAL 239
>pir||D70200 polyribonucleotide nucleotidyltransferase (pnpA) homolog - Lyme
disease spirochete >gi|2688743|gb|AAC67149.1| (AE001179)
polyribonucleotide nucleotidyltransferase (pnpA)
[Borrelia burgdorferi]
Length = 722
Score = 81.1 bits (197), Expect = 1e-14
Identities = 72/214 (33%), Positives = 108/214 (49%), Gaps = 14/214 (6%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPD---RA 73
R DGR E+R I EV +L +GSA G+ + +A + + + D R
Sbjct: 316 RTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDGDKRL 375
Query: 74 ILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEM-FPRTAIDVFIEVLQA 132
+ YN PFSV E + RR I + + ALE + + FP T I V EVL++
Sbjct: 376 NFMLHYNFPPFSVGETGRLMTGRREIGHGHLAQRALESMVPGKNDFPYT-IRVVSEVLES 434
Query: 133 DAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEADVP 188
+ + +A + A S++L AG+P++ VA A G I EG+ ++ D+ EED+ G+ D
Sbjct: 435 NGSSSMATVCAGSMSLMSAGVPVKGQVAGIAMGLISEGDKYVVLSDILGEEDHLGDMDFK 494
Query: 189 VAIMPLKNDITLLQMD---GYLTKDEFIEAVKLA 219
VA KN IT QMD +TKD +A++ A
Sbjct: 495 VA--GTKNGITGFQMDIKIENVTKDLMRDALEQA 526
>pir||D82350 ribonuclease PH VC0210 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9654617|gb|AAF93386.1| (AE004111)
ribonuclease PH [Vibrio cholerae]
Length = 257
Score = 81.1 bits (197), Expect = 1e-14
Identities = 65/239 (27%), Positives = 111/239 (46%), Gaps = 25/239 (10%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
R D R ++RPIK+ A GS +E+G K++ E P+ L+ + +
Sbjct: 21 RPDNRAADQVRPIKITRHYTAYAEGSVLVEFGNTKVLCNA-SIEEGVPRWLKGQGKGWVT 79
Query: 77 VRYNMAPFSVEERKKPGPDR-----RSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Y M P + R + R++EI ++I +L + LE I V +V+Q
Sbjct: 80 AEYGMLPRATHSRTRREATNGKQGGRTMEIQRLIARSLRAVVDLEAMGEIMITVDCDVIQ 139
Query: 132 ADAGTRVAGITAASLALADAGI-----------PMRDLVAACAAGKIEGEIVLDLNKEED 180
AD GTR A IT AS+ALADA PM+ VAA + G + +++ DL ED
Sbjct: 140 ADGGTRTASITGASVALADAFAHLIAKGQLKKNPMKGHVAAVSVGILGEDVLCDLEYVED 199
Query: 181 NYGEADVPVAIMPLKNDITLLQMDGY-----LTKDEFIEAVKLAIKGAKAVYQKQREAL 234
+ + D+ V + + ++++ G + ++ +E + +A KG + Q+ +L
Sbjct: 200 SAADTDMNVV---MTEEGKMIEIQGTAEGEPFSHEQLLELLAVAKKGIADIVAVQKASL 255
>pir||H65106 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) alpha chain
- Escherichia coli
Length = 734
Score = 80.8 bits (196), Expect = 1e-14
Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 20/224 (8%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNK-IIAAVYGPRE----LHPKHLQRPD 71
RIDGR+K +R + + GVL +GSA G+ + ++ A G L +R D
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 72 RAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIK-GALEPALILEMFPRTAIDVFIEV 129
+ YN P+SV E G P RR I ++ K G L ++ FP T + V E+
Sbjct: 398 TFLFH--YNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEI 454
Query: 130 LQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEA 185
+++ + +A + ASLAL DAG+P++ VA A G + EG+ ++ D+ +ED+ G+
Sbjct: 455 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDM 514
Query: 186 DVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAV 226
D VA ++ I+ LQMD +TK E ++ KGA+ +
Sbjct: 515 DFKVA--GSRDGISALQMDIKIEGITK-EIMQVALNQAKGARLI 555
>gb|AAA57967.1| (U18997) polynucleotide phosphorylase [Escherichia coli]
>gi|1789555|gb|AAC76198.1| (AE000397) polynucleotide
phosphorylase; cytidylate kinase activity [Escherichia
coli K12]
Length = 734
Score = 80.4 bits (195), Expect = 2e-14
Identities = 66/199 (33%), Positives = 104/199 (52%), Gaps = 16/199 (8%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNK-IIAAVYGPRE----LHPKHLQRPD 71
RIDGR+K +R + + GVL +GSA G+ + ++ A G L +R D
Sbjct: 338 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 397
Query: 72 RAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIK-GALEPALILEMFPRTAIDVFIEV 129
+ YN P+SV E G P RR I ++ K G L ++ FP T + V E+
Sbjct: 398 TFLFH--YNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEI 454
Query: 130 LQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEA 185
+++ + +A + ASLAL DAG+P++ VA A G + EG+ ++ D+ +ED+ G+
Sbjct: 455 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDM 514
Query: 186 DVPVAIMPLKNDITLLQMD 204
D VA ++ I+ LQMD
Sbjct: 515 DFKVA--GSRDGISALQMD 531
>sp|P05055|PNP_ECOLI POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (POLYNUCLEOTIDE
PHOSPHORYLASE) (PNPASE)
Length = 711
Score = 80.4 bits (195), Expect = 2e-14
Identities = 66/199 (33%), Positives = 104/199 (52%), Gaps = 16/199 (8%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNK-IIAAVYGPRE----LHPKHLQRPD 71
RIDGR+K +R + + GVL +GSA G+ + ++ A G L +R D
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 72 RAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIK-GALEPALILEMFPRTAIDVFIEV 129
+ YN P+SV E G P RR I ++ K G L ++ FP T + V E+
Sbjct: 375 TFLFH--YNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEI 431
Query: 130 LQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEA 185
+++ + +A + ASLAL DAG+P++ VA A G + EG+ ++ D+ +ED+ G+
Sbjct: 432 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDM 491
Query: 186 DVPVAIMPLKNDITLLQMD 204
D VA ++ I+ LQMD
Sbjct: 492 DFKVA--GSRDGISALQMD 508
>emb|CAA71697.1| (Y10692) pnp [Yersinia enterocolitica]
Length = 711
Score = 80.4 bits (195), Expect = 2e-14
Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 16/199 (8%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNK-IIAAVYGP----RELHPKHLQRPD 71
RIDGR+K +R + + GVL +GSA G+ + ++ A G + + +R D
Sbjct: 320 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 379
Query: 72 RAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIK-GALEPALILEMFPRTAIDVFIEV 129
+L YN P+SV E G P RR I ++ K G L FP T + V E+
Sbjct: 380 SFLLH--YNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYT-VRVVSEI 436
Query: 130 LQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGE----IVLDLNKEEDNYGEA 185
+++ + +A + ASLAL DAG+P++ VA A G ++ + ++ D+ +ED+ G+
Sbjct: 437 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDILGDEDHLGDM 496
Query: 186 DVPVAIMPLKNDITLLQMD 204
D VA ++ IT LQMD
Sbjct: 497 DFKVA--GSRDGITALQMD 513
>sp|O34275|PNP_YEREN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (POLYNUCLEOTIDE
PHOSPHORYLASE) (PNPASE)
Length = 706
Score = 80.4 bits (195), Expect = 2e-14
Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 16/199 (8%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNK-IIAAVYGP----RELHPKHLQRPD 71
RIDGR+K +R + + GVL +GSA G+ + ++ A G + + +R D
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNIDELMGERTD 374
Query: 72 RAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIK-GALEPALILEMFPRTAIDVFIEV 129
+L YN P+SV E G P RR I ++ K G L FP T + V E+
Sbjct: 375 SFLLH--YNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSEFPYT-VRVVSEI 431
Query: 130 LQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGE----IVLDLNKEEDNYGEA 185
+++ + +A + ASLAL DAG+P++ VA A G ++ + ++ D+ +ED+ G+
Sbjct: 432 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSDILGDEDHLGDM 491
Query: 186 DVPVAIMPLKNDITLLQMD 204
D VA ++ IT LQMD
Sbjct: 492 DFKVA--GSRDGITALQMD 508
>gi|9910360 exosome component Rrp46 [Homo sapiens]
>gi|11424056|ref|XP_008911.1| exosome component Rrp46
[Homo sapiens] >gi|8927592|gb|AAF82135.1|AF281134_1
(AF281134) exosome component Rrp46 [Homo sapiens]
Length = 235
Score = 80.0 bits (194), Expect = 2e-14
Identities = 64/221 (28%), Positives = 110/221 (48%), Gaps = 20/221 (9%)
Query: 26 LRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFS 85
LR E +L +GSA G ++A VYGP E+ + + +N A
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK----------VSKEIFNKATLE 77
Query: 86 VEERKK---PGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAG-I 141
V R K PG +S E ++I+ E ++ + PRT+I V ++V+ +DAG+ +A +
Sbjct: 78 VILRPKIGLPGVAEKSRE--RLIRNTCEAVVLGTLHPRTSITVVLQVV-SDAGSLLACCL 134
Query: 142 TAASLALADAGIPMRDLV--AACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDIT 199
AA +AL DAG+PMR L ACA +G +VLD +++ A + A+ ++ +
Sbjct: 135 NAACMALVDAGVPMRALFCGVACALDS-DGTLVLDPTSKQEKEARAVLTFALDSVERKLL 193
Query: 200 LLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLK 240
+ G + E + + A ++ V++ RE+L+ +Y K
Sbjct: 194 MSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRRYSK 234
>sp|Q9ZD43|PNP_RICPR POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (POLYNUCLEOTIDE
PHOSPHORYLASE) (PNPASE) >gi|7447101|pir||B71654
polyribonucleotide nucleotidyltransferase (pnp) RP504 -
Rickettsia prowazekii >gi|3861056|emb|CAA14956.1|
(AJ235272) POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
(pnp) [Rickettsia prowazekii]
Length = 745
Score = 79.6 bits (193), Expect = 3e-14
Identities = 64/224 (28%), Positives = 118/224 (52%), Gaps = 12/224 (5%)
Query: 9 KLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNK-IIAAVYGPR--ELHPK 65
K++++N RIDGR ++R I EVG+L +A+GSA G+ + +++ +G E
Sbjct: 309 KILEKN-IRIDGRSTTDIRQIACEVGLLPSAHGSALFTRGETQSLVSTTFGTSLDEQIVD 367
Query: 66 HLQRPDRAILRVRYNMAPFSVEERKK-PGPDRRSIEISKVIKGALEPALILEMFPRTAID 124
L+ + + Y P+SV E P RR + K+ A+ P L ++ +I
Sbjct: 368 SLEGEYKERFMLNYIFPPYSVNEAMPMKAPSRREVGHGKLAWRAINPILPNKVQFPYSIR 427
Query: 125 VFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGE----IVLDLNKEED 180
V E +++ + +A + +SLAL AG+P++ VA A G ++ ++ D+ +ED
Sbjct: 428 VVAETTESNGSSSMATVCGSSLALMHAGVPIKAPVAGIAMGLVKESNKFAVLSDIIGDED 487
Query: 181 NYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAK 224
+G+ D VA + IT LQMD ++ +F + +++A++ A+
Sbjct: 488 YFGDMDFKVA--GTSSGITALQMDIKISGIDF-KIIQIALEQAR 528
>pir||A81866 tRNA nucleotidyltransferase (EC 2.7.7.56) - Neisseria meningitidis
(group A strain Z2491) >gi|7380343|emb|CAB84930.1|
(AL162756) ribonuclease PH [Neisseria meningitidis
Z2491]
Length = 242
Score = 79.6 bits (193), Expect = 3e-14
Identities = 71/228 (31%), Positives = 107/228 (46%), Gaps = 21/228 (9%)
Query: 26 LRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFS 85
LR IK+ L + +GS IE G K+I + P L+ ++ + Y M P S
Sbjct: 14 LRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENV-PPFLRGKNQGWVTAEYGMLPAS 72
Query: 86 VEERKKPGPDR-----RSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAG 140
R + R+ EI ++I +L + +E I + +V+QAD GTR A
Sbjct: 73 TASRMRREASAGKQSGRTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGTRTAS 132
Query: 141 ITAASLALADA-------GI----PMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPV 189
IT A +AL A GI P+R+ VAA + G + G +LDL+ ED+ ++DV +
Sbjct: 133 ITGAFVALQIAVGKLVSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDSGCDSDVNI 192
Query: 190 AIMPLKNDITLLQ---MDGYLTKDEFIEAVKLAIKGAKAVYQKQREAL 234
+M I +Q D + DE + V LA KG + Q Q+ AL
Sbjct: 193 -VMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNAL 239
>sp|P41121|PNP_PHOLU POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (POLYNUCLEOTIDE
PHOSPHORYLASE) (PNPASE) (CAP87K) >gi|7447092|pir||S38883
polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) -
Xenorhabdus luminescens >gi|561531|emb|CAA53671.1|
(X76069) polynucleotide phosphorylase [Photorhabdus
luminescens]
Length = 709
Score = 79.2 bits (192), Expect = 4e-14
Identities = 67/199 (33%), Positives = 102/199 (50%), Gaps = 16/199 (8%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNK-IIAAVYGPRE----LHPKHLQRPD 71
RIDGR+K +R + + GVL +GSA G+ + ++ A G + +R D
Sbjct: 315 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTERDAQIIDELMGERTD 374
Query: 72 RAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIK-GALEPALILEMFPRTAIDVFIEV 129
R +L YN P+SV E G P RR I ++ K G L FP T + V E+
Sbjct: 375 RFLLH--YNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKANEFPYT-VRVVSEI 431
Query: 130 LQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEA 185
+++ + +A + ASLAL DAG+P++ VA A G + EG+ ++ D+ +ED+ G+
Sbjct: 432 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSDILGDEDHLGDM 491
Query: 186 DVPVAIMPLKNDITLLQMD 204
D VA I+ LQMD
Sbjct: 492 DFKVA--GSCEGISALQMD 508
>pir||G81076 ribonuclease PH NMB1499 [imported] - Neisseria meningitidis (group
B strain MD58) >gi|7226741|gb|AAF41855.1| (AE002499)
ribonuclease PH [Neisseria meningitidis MC58]
Length = 242
Score = 79.2 bits (192), Expect = 4e-14
Identities = 73/231 (31%), Positives = 109/231 (46%), Gaps = 27/231 (11%)
Query: 26 LRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFS 85
LR IK+ L + +GS IE G K+I + P L+ ++ + Y M P S
Sbjct: 14 LRDIKITPHFLPHTDGSCLIECGNTKVICTASIDENV-PPFLRGKNQGWVTAEYGMLPAS 72
Query: 86 VEER--------KKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTR 137
R K+ G R+ EI ++I +L + +E I + +V+QAD GTR
Sbjct: 73 TASRMLREASAGKQSG---RTQEIQRLIGRSLRAVVDMEKLGERQILIDCDVIQADGGTR 129
Query: 138 VAGITAASLALADA-------GI----PMRDLVAACAAGKIEGEIVLDLNKEEDNYGEAD 186
A IT A +AL A GI P+R+ VAA + G + G +LDL+ ED+ ++D
Sbjct: 130 TASITGAFVALQIAVGKLVSDGILSENPIREAVAAVSVGVVNGVPLLDLDYPEDSGCDSD 189
Query: 187 VPVAIMPLKNDITLLQ---MDGYLTKDEFIEAVKLAIKGAKAVYQKQREAL 234
V + +M I +Q D + DE + V LA KG + Q Q+ AL
Sbjct: 190 VNI-VMTASGKIIEIQGTAEDAPFSLDELGKLVALAQKGIGELLQHQQNAL 239
>pir||T49262 hypothetical protein F12M12.180 - Arabidopsis thaliana
>gi|7799009|emb|CAB90948.1| (AL355775) putative protein
[Arabidopsis thaliana]
Length = 239
Score = 79.2 bits (192), Expect = 4e-14
Identities = 54/165 (32%), Positives = 80/165 (47%), Gaps = 10/165 (6%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
R DGR +LRP+ +L +GSA G K++AAVYGP+ K+ + ++A
Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKN-ENAEKACFE 63
Query: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGT 136
V + + + +K E ++K ++ +L + P T V I+V+ D
Sbjct: 64 VIWKPKSGQIGKVEK--------EYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSL 115
Query: 137 RVAGITAASLALADAGIPMRDL-VAACAAGKIEGEIVLDLNKEED 180
I AA AL DAGIPM+ L VA C G +VLD NK E+
Sbjct: 116 LPCAINAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEE 160
>prf||2208281A 100RNP protein [Spinacia oleracea]
Length = 779
Score = 78.8 bits (191), Expect = 6e-14
Identities = 75/245 (30%), Positives = 118/245 (47%), Gaps = 22/245 (8%)
Query: 9 KLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAV-YGPRELHPK-- 65
K I E GRR DGR +RPI G+L A+GSA G+ + +A V G +++ +
Sbjct: 427 KRIVEGGRRSDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRID 486
Query: 66 HLQRPDRA-ILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPALILE-MFPRTA 122
L+ D + ++Y+ P V E + G P RR I + + ALEP L E FP T
Sbjct: 487 TLEGDDESKRFYLQYSFPPSCVGEAGRVGAPSRREIGHGTLAERALEPILPSEDEFPYT- 545
Query: 123 IDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI--------EGE--IV 172
+ V + +++ + +A + SLAL DAG+P++ +A A G + +G I+
Sbjct: 546 VRVESNITESNGSSSMASVCGGSLALLDAGVPVKCPIAGIAMGMVLDTKEFGGDGTPLIL 605
Query: 173 LDLNKEEDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAVYQK 229
D+ ED G+ D VA + +T QMD G +T +A+ A G K + +
Sbjct: 606 SDITGSEDASGDMDFKVA--GNADCVTAFQMDIKVGGITLSVMKQALLQAKDGRKIILAE 663
Query: 230 QREAL 234
+ L
Sbjct: 664 MSKCL 668
>gb|AAC49669.1| (U52048) polyribonucleotide phophorylase [Spinacia oleracea]
Length = 822
Score = 78.8 bits (191), Expect = 6e-14
Identities = 75/245 (30%), Positives = 118/245 (47%), Gaps = 22/245 (8%)
Query: 9 KLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAV-YGPRELHPK-- 65
K I E GRR DGR +RPI G+L A+GSA G+ + +A V G +++ +
Sbjct: 429 KRIVEGGRRSDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRID 488
Query: 66 HLQRPDRA-ILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPALILE-MFPRTA 122
L+ D + ++Y+ P V E + G P RR I + + ALEP L E FP T
Sbjct: 489 TLEGDDESKRFYLQYSFPPSCVGEAGRVGAPSRREIGHGTLAERALEPILPSEDEFPYT- 547
Query: 123 IDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI--------EGE--IV 172
+ V + +++ + +A + SLAL DAG+P++ +A A G + +G I+
Sbjct: 548 VRVESNITESNGSSSMASVCGGSLALLDAGVPVKCPIAGIAMGMVLDTKEFGGDGTPLIL 607
Query: 173 LDLNKEEDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAVYQK 229
D+ ED G+ D VA + +T QMD G +T +A+ A G K + +
Sbjct: 608 SDITGSEDASGDMDFKVA--GNADCVTAFQMDIKVGGITLSVMKQALLQAKDGRKIILAE 665
Query: 230 QREAL 234
+ L
Sbjct: 666 MSKCL 670
>pir||S64680 exoribonuclease 100 RNP - spinach
Length = 779
Score = 78.8 bits (191), Expect = 6e-14
Identities = 75/245 (30%), Positives = 118/245 (47%), Gaps = 22/245 (8%)
Query: 9 KLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAV-YGPRELHPK-- 65
K I E GRR DGR +RPI G+L A+GSA G+ + +A V G +++ +
Sbjct: 427 KRIVEGGRRSDGRTSEGVRPINSRCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRID 486
Query: 66 HLQRPDRA-ILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPALILE-MFPRTA 122
L+ D + ++Y+ P V E + G P RR I + + ALEP L E FP T
Sbjct: 487 TLEGDDESKRFYLQYSFPPSCVGEAGRVGAPSRREIGHGTLAERALEPILPSEDEFPYT- 545
Query: 123 IDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI--------EGE--IV 172
+ V + +++ + +A + SLAL DAG+P++ +A A G + +G I+
Sbjct: 546 VRVESNITESNGSSSMASVCGGSLALLDAGVPVKCPIAGIAMGMVLDTKEFGGDGTPLIL 605
Query: 173 LDLNKEEDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAVYQK 229
D+ ED G+ D VA + +T QMD G +T +A+ A G K + +
Sbjct: 606 SDITGSEDASGDMDFKVA--GNADCVTAFQMDIKVGGITLSVMKQALLQAKDGRKIILAE 663
Query: 230 QREAL 234
+ L
Sbjct: 664 MSKCL 668
>pir||G75320 polynucleotide phosphorylase - Deinococcus radiodurans (strain R1)
>gi|6459851|gb|AAF11608.1|AE002042_3 (AE002042)
polynucleotide phosphorylase [Deinococcus radiodurans]
Length = 810
Score = 78.8 bits (191), Expect = 6e-14
Identities = 76/247 (30%), Positives = 116/247 (46%), Gaps = 19/247 (7%)
Query: 2 MEKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRE 61
+EK E +LI E R DGR +RPI +E L A+GSA G+ +++ E
Sbjct: 335 VEKRELRRLILEENLRADGRDSKTVRPIWIEARPLPTAHGSAVFTRGETQVLGVTTLGTE 394
Query: 62 -----LHPKHLQRPDRAILRVRYNMAPFSVEERKK-PGPDRRSIEISKVIKGALEPAL-I 114
+ + D+ +L YN P+S E K+ G RR I + K A+ L
Sbjct: 395 RDEILIDDLTAESGDKFLL--HYNFPPYSTGEVKRMGGQSRREIGHGNLAKRAIRAVLPS 452
Query: 115 LEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE--- 170
E FP I V +VL+++ + + + A +L+L DAG+P++ VA A G + EG+
Sbjct: 453 FEEFP-YVIRVVGDVLESNGSSSMGTVCAGTLSLMDAGVPLKAPVAGVAMGLVMEGDNYR 511
Query: 171 IVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAVY 227
++ D+ ED G+ D V +T LQMD G +T EA+ A +G +
Sbjct: 512 VLTDILGLEDALGDMDFKVC--GTAEGVTALQMDIKVGGITPQIMREALAQAKEGRLHIL 569
Query: 228 QKQREAL 234
K E L
Sbjct: 570 GKMAEVL 576
>pir||C82673 ribonuclease PH XF1505 [imported] - Xylella fastidiosa (strain
9a5c) >gi|9106537|gb|AAF84314.1|AE003980_6 (AE003980)
ribonuclease PH [Xylella fastidiosa]
Length = 241
Score = 77.3 bits (187), Expect = 2e-13
Identities = 68/242 (28%), Positives = 106/242 (43%), Gaps = 25/242 (10%)
Query: 14 NGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRA 73
N R GR+ LRP+++E +A GS + +G N ++ P L+
Sbjct: 2 NVSRPSGRQADALRPVRIERAFTCHAEGSVLVSFG-NTLVVCTASVEAKVPVFLRNKGEG 60
Query: 74 ILRVRYNMAPFSVEERKKPGPDR-----RSIEISKVIKGALEPALILEMFPRTAIDVFIE 128
+ Y M P S R + R R++EI ++I AL + I + +
Sbjct: 61 WVTAEYGMLPRSTHTRSEREAARGKQAGRTLEIQRLIGRALRTCVDRTALGERTITLDCD 120
Query: 129 VLQADAGTRVAGITAASLALADA-----------GIPMRDLVAACAAGKIEGEIVLDLNK 177
VLQAD GTR A IT A +AL DA P+ VAA + G G VLDL+
Sbjct: 121 VLQADGGTRTAAITGAYVALVDAVRCLEQRGQLKKSPLIGAVAAVSVGIYRGMPVLDLDY 180
Query: 178 EEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEA-----VKLAIKGAKAVYQKQRE 232
ED+ + D+ V + ++ ++++ G + F + LA +G ++ QRE
Sbjct: 181 PEDSDCDTDMNVV---MNDEGGVIELQGTAEQQAFRRGELDMLLALAERGTAMLFDIQRE 237
Query: 233 AL 234
AL
Sbjct: 238 AL 239
>pir||A26118 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) alpha chain
- Escherichia coli >gi|551833|gb|AAA83905.1| (J02638)
polynucleotide phosphorilase [Escherichia coli]
Length = 711
Score = 76.9 bits (186), Expect = 2e-13
Identities = 65/199 (32%), Positives = 104/199 (51%), Gaps = 16/199 (8%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNK--IIAAVYGPRE---LHPKHLQRPD 71
RIDGR+K +R + + GVL +GSA G+ + + A + R+ L +R D
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLRTARDAQVLDELMGERTD 374
Query: 72 RAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIK-GALEPALILEMFPRTAIDVFIEV 129
+ YN P+SV E G P RR I ++ K G L ++ FP T + V E+
Sbjct: 375 TFLFH--YNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEI 431
Query: 130 LQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEA 185
+++ + +A + ASLA DAG+P++ VA A G + EG+ ++ D+ +ED+ G+
Sbjct: 432 TESNGSSSMASVCGASLASMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDM 491
Query: 186 DVPVAIMPLKNDITLLQMD 204
D VA ++ I+ LQMD
Sbjct: 492 DFKVA--GSRDGISALQMD 508
>pir||E82298 polyribonucleotide nucleotidyltransferase VC0647 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655083|gb|AAF93813.1| (AE004150) polyribonucleotide
nucleotidyltransferase [Vibrio cholerae]
Length = 709
Score = 76.9 bits (186), Expect = 2e-13
Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 21/236 (8%)
Query: 2 MEKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNK-IIAAVYGPR 60
+EK + I RIDGR+K +R + + GVL +GSA G+ + ++ A G +
Sbjct: 301 LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQ 360
Query: 61 E----LHPKHLQRPDRAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPALIL 115
+ ++ D +L YN P+ V E G P RR I ++ K + +
Sbjct: 361 RDAQIIDELTGEKKDHFLLH--YNFPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPS 418
Query: 116 -EMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGE---- 170
E FP T + V E+ +++ + +A + +SLAL DAG+P++ VA A G ++ E
Sbjct: 419 PEEFPYT-VRVVSEITESNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFV 477
Query: 171 IVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFI--EAVKLAIKGAK 224
++ D+ +ED+ G+ D VA +T LQMD K E I E +++A+ AK
Sbjct: 478 VLSDILGDEDHLGDMDFKVA--GTATGVTALQMD---IKIEGITKEIMQIALNQAK 528
>pir||C71269 probable polyribonucleotide nucleotidyltransferase (pnp) - syphilis
spirochete >gi|3323203|gb|AAC26576.1| (AE001258)
polyribonucleotide nucleotidyltransferase (pnp)
[Treponema pallidum]
Length = 702
Score = 76.5 bits (185), Expect = 3e-13
Identities = 65/201 (32%), Positives = 100/201 (49%), Gaps = 13/201 (6%)
Query: 13 ENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAV----YGPRELHPKHLQ 68
+ G RIDGR +RPI EVGVL +GSA G+ + +A V +++ ++
Sbjct: 310 DRGLRIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLAVVTLGAMSDGQVY-DDIE 368
Query: 69 RPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPAL-ILEMFPRTAIDVFI 127
R + YN PFSV E + G RR I + +L + E FP T + V
Sbjct: 369 GDRRENFILHYNFPPFSVGEIGRMGVGRREIGHGCLAHRSLSAVIPDPEQFPYT-VRVVS 427
Query: 128 EVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEG----EIVLDLNKEEDNYG 183
E+L+++ + +A + + +L+L AG+P++ VA A G I I+ D+ EED+ G
Sbjct: 428 EILESNGSSSMATVCSGTLSLLHAGVPIKKPVAGIAMGLITDGVRYAILSDILGEEDHLG 487
Query: 184 EADVPVAIMPLKNDITLLQMD 204
+ D VA + IT QMD
Sbjct: 488 DMDFKVA--GTCDGITGFQMD 506
>pir||H69190 conserved hypothetical protein MTH682 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621767|gb|AAB85187.1| (AE000848) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 271
Score = 76.1 bits (184), Expect = 4e-13
Identities = 57/238 (23%), Positives = 106/238 (43%), Gaps = 33/238 (13%)
Query: 14 NGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRA 73
N RIDGR +E R I +E GV+ A GS+ ++ G +II V ++ P+
Sbjct: 22 NKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGV--KPQIGEPFPDTPEMG 79
Query: 74 ILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAID--------V 125
++ + P + + PD RS+E+S+V+ + + ++++ I+ +
Sbjct: 80 VILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFL 139
Query: 126 FIEVLQADAGTRVAGITAASLALADAGIPMRDL--------------------VAACAAG 165
+ ++ D A + A AL D IP ++ C
Sbjct: 140 DLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKMQPLPVNRKALMCTFA 199
Query: 166 KIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQM--DGYLTKDEFIEAVKLAIK 221
KI EIVLD + EE++ A + + + + I +Q +G LT+D+ ++AV +A++
Sbjct: 200 KIGNEIVLDPSLEEEDILTARISIGVTE-EGSICAMQKGGEGPLTRDDVLKAVSIAVE 256
>pir||G81725 polyribonucleotide nucleotidyltransferase TC0230 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190270|gb|AAF39102.1| (AE002290) polyribonucleotide
nucleotidyltransferase [Chlamydia muridarum]
Length = 693
Score = 75.3 bits (182), Expect = 6e-13
Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 12/204 (5%)
Query: 10 LIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIA-AVYGPRELHPK--H 66
LI + G R+DGR E+RPI +EV L +GS G+ + +A G + +
Sbjct: 307 LIRDLGIRVDGRSTTEIRPISIEVSFLPRTHGSCLFTRGETQSVAVCTLGGESMAQRFED 366
Query: 67 LQRPDRAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTAID 124
L A ++Y PFSV E + G P RR I K+ + AL L FP T +
Sbjct: 367 LNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHVLPEASRFPYT-VR 425
Query: 125 VFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI----EGEIVLDLNKEED 180
V + +++ + +A + L+L DAG+P++ VA A G I + ++ D++ ED
Sbjct: 426 VESNITESNGSSSMASVCGGCLSLMDAGVPIKAPVAGIAMGLILDQDKAIVLSDISGIED 485
Query: 181 NYGEADVPVAIMPLKNDITLLQMD 204
+ G+ D VA + IT QMD
Sbjct: 486 HLGDMDFKVA--GTEEGITAFQMD 507
>pir||F82831 polynucleotide phosphorylase XF0239 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9105050|gb|AAF83052.1|AE003877_7
(AE003877) polynucleotide phosphorylase [Xylella
fastidiosa]
Length = 719
Score = 75.3 bits (182), Expect = 6e-13
Identities = 63/197 (31%), Positives = 98/197 (48%), Gaps = 12/197 (6%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPD---RA 73
RIDGR +RPI ++VGVL +GS G+ + I + + +
Sbjct: 335 RIDGRSLEAVRPITVKVGVLPRVHGSGLFTRGETQAIVVTTLGTARDGQVIDAVTGEYKE 394
Query: 74 ILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIK-GALEPALILEMFPRTAIDVFIEVLQ 131
YN P+SV E + G P RR I ++ + G L L+ FP T I V E+ +
Sbjct: 395 NFLFHYNFPPYSVGECGRFGVPKRREIGHGRLARRGVLAVMPSLDEFPYT-IRVVSEITE 453
Query: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEADV 187
++ + +A + +SLAL DAG+P++ VA A G + EGE ++ D+ +ED+ G+ D
Sbjct: 454 SNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLSDILGDEDHLGDMDF 513
Query: 188 PVAIMPLKNDITLLQMD 204
VA ++ LQMD
Sbjct: 514 KVA--GTSEGVSALQMD 528
>sp|P44584|PNP_HAEIN POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (POLYNUCLEOTIDE
PHOSPHORYLASE) (PNPASE) >gi|1075159|pir||E64056
polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)
alpha chain - Haemophilus influenzae (strain Rd KW20)
>gi|1573193|gb|AAC21898.1| (U32709) polynucleotide
phosphorylase (pnp) [Haemophilus influenzae Rd]
Length = 709
Score = 75.3 bits (182), Expect = 6e-13
Identities = 68/222 (30%), Positives = 110/222 (48%), Gaps = 21/222 (9%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHL-----QRPD 71
RIDGR +R + + GVL +GSA G+ + +A E + + +R D
Sbjct: 314 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERQD 373
Query: 72 RAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTAIDVFIEV 129
+ YN P+SV E G P RR I ++ K + + L FP + V E+
Sbjct: 374 HFLFH--YNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPSLAEFPYV-VRVVSEI 430
Query: 130 LQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGE----IVLDLNKEEDNYGEA 185
+++ + +A + ASLAL DAG+P++ VA A G ++ E ++ D+ +ED+ G+
Sbjct: 431 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEEEKFVVLSDILGDEDHLGDM 490
Query: 186 DVPVAIMPLKNDITLLQMDGYLTKDEFI--EAVKLAIKGAKA 225
D VA + +T LQMD K E I E +++A+ AK+
Sbjct: 491 DFKVA--GTREGVTALQMD---IKIEGITPEIMQIALNQAKS 527
>sp|Q9ZCT5|RNPH_RICPR RIBONUCLEASE PH (RNASE PH) (TRNA NUCLEOTIDYLTRANSFERASE)
>gi|7435287|pir||C71668 ribonuclease ph (rph) RP628 -
Rickettsia prowazekii >gi|3861169|emb|CAA15069.1|
(AJ235272) RIBONUCLEASE PH (rph) [Rickettsia prowazekii]
Length = 240
Score = 75.3 bits (182), Expect = 6e-13
Identities = 67/239 (28%), Positives = 107/239 (44%), Gaps = 25/239 (10%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
R GRK +LRPI +E+ L NA GS I+ G ++ + + P L+ ++ +
Sbjct: 2 RQSGRKSNQLRPISLELSPLINAEGSCLIKIGNTHVMCSATCETTV-PPFLRGQNQGWIT 60
Query: 77 VRYNMAPFSVEERKK-----PGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Y M P S R K R+ EI ++I A+ + L+ I + +V+
Sbjct: 61 AEYGMIPGSTSHRIKREAALGKQGGRTQEIQRLIGRAMRCVINLQKLGERQIIIDCDVIN 120
Query: 132 ADAGTRVAGITAASLALADA-----------GIPMRDLVAACAAGKIEGEIVLDLNKEED 180
AD GTR A IT + +AL A P+ +AA + G +G VLDL+ ED
Sbjct: 121 ADGGTRTAAITGSYVALHLAIRSLMKKRILKVNPLISQIAAISCGIYKGNAVLDLDYLED 180
Query: 181 NYGEADVPVAIMPLKNDITLLQMDGYLTK-----DEFIEAVKLAIKGAKAVYQKQREAL 234
+ E D N L+++ G K ++F+ +KLA G +++ Q + L
Sbjct: 181 SDAEVDSNFVFACNGN---LIEVQGTAEKEPFSEEQFLAMLKLAKSGVVELFKLQNQVL 236
>pir||T48631 polynucleotide phosphorylase - Arabidopsis thaliana
>gi|4971998|emb|CAB43864.1| (Y14685) polynucleotide
phosphorylase [Arabidopsis thaliana]
>gi|4972000|emb|CAB43865.1| (Y14686) polynucleotide
phosphorylase [Arabidopsis thaliana]
>gi|7573307|emb|CAB87625.1| (AL163792) polynucleotide
phosphorylase [Arabidopsis thaliana]
Length = 991
Score = 74.9 bits (181), Expect = 8e-13
Identities = 66/207 (31%), Positives = 99/207 (46%), Gaps = 19/207 (9%)
Query: 14 NGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVY--GPRELHP-KHLQRP 70
+G R+DGR E+RPI E L +GSA G +++ V P E L P
Sbjct: 361 DGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGP 420
Query: 71 DRAILRVRYNMAPFSVEE-RKKPGPDRRSIEISKVIKGALEPALILE-MFPRTAIDVFIE 128
+ + Y+ P+ E K+ G +RR + + + AL L E FP T I + E
Sbjct: 421 PKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPYT-IRINSE 479
Query: 129 VLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI------EGE-----IVLDLNK 177
V+ +D T +A + S+AL DAGIP+R VA + G I GE IV D+
Sbjct: 480 VMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYRIVTDILG 539
Query: 178 EEDNYGEADVPVAIMPLKNDITLLQMD 204
ED+ G+ D +A ++ +T +Q+D
Sbjct: 540 LEDHLGDMDFKIA--GTRDGVTAIQLD 564
>pir||T50343 low homolog to ribonuclease ph-like protein [imported] - fission
yeast (Schizosaccharomyces pombe)
>gi|6983772|emb|CAB75416.1| (AL139314) low similarity to
ribonuclease ph-like protein [Schizosaccharomyces pombe]
Length = 257
Score = 74.9 bits (181), Expect = 8e-13
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 27 RPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSV 86
R I +++G A GS+Y E K KI V GPR K A L + ++PFS
Sbjct: 36 RKIYLKLGWATKAVGSSYFESEKIKIACTVSGPRP--SKTFAFRSSAKLNCEFRLSPFST 93
Query: 87 EERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADA--GTRVAGITAA 144
R+ S++I+ A+ P+++L ++P+++IDV+I+V+++D T A I+ A
Sbjct: 94 SVRQGHVQTVEEKSYSQMIEAAISPSILLHLYPKSSIDVYIQVIESDGALATLAAAISCA 153
Query: 145 SLALADAGIPMRDLV 159
S A+ADA I DLV
Sbjct: 154 SSAIADANIDCIDLV 168
>gb|AAD28218.1|AF120720_1 (AF120720) ribonuclease PH [Legionella pneumophila]
Length = 235
Score = 74.5 bits (180), Expect = 1e-12
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 17/191 (8%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
R R+ +LRP+ + A GS +E+G+ K+I E P+ L+ ++ +
Sbjct: 2 RPSNREHDQLRPVTITRNFTNYAEGSVLVEFGQTKVICNA-SIVEGVPRFLKGKNQGWIT 60
Query: 77 VRYNMAPFSVEERKKPGPDR-----RSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQ 131
Y M P + R + + R++EI ++I +L + L++ I + +V+Q
Sbjct: 61 AEYGMLPRATHSRTEREASKGKQGGRTLEIQRLIGRSLRACIDLKVLGENTITLDCDVIQ 120
Query: 132 ADAGTRVAGITAASLALADA-----------GIPMRDLVAACAAGKIEGEIVLDLNKEED 180
AD GTR A IT + +A+ DA +P + VAA + G G+ VLDL+ ED
Sbjct: 121 ADGGTRTAAITGSCVAMRDAIHWMVQREKIKKMPAFNYVAAVSVGIYRGQPVLDLDYAED 180
Query: 181 NYGEADVPVAI 191
E D+ V +
Sbjct: 181 VLAETDMNVVM 191
>gb|AAF68421.1|AF237935_1 (AF237935) polynucleotide phosphorylase [Pasteurella multocida]
Length = 684
Score = 74.5 bits (180), Expect = 1e-12
Identities = 67/222 (30%), Positives = 110/222 (49%), Gaps = 21/222 (9%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHL-----QRPD 71
RIDGR +R + + GVL +GSA G+ + +A E + + +R D
Sbjct: 287 RIDGRTVDTVRALDICTGVLPRTHGSAIFTRGETQALAVATLGTERDAQIIDELTGERSD 346
Query: 72 RAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTAIDVFIEV 129
+ YN P+SV E G P RR I ++ K + + L FP + V E+
Sbjct: 347 HFLFH--YNFPPYSVGETGMIGSPKRREIGHGRLAKRGVAAVMPTLAEFPYV-VRVVSEI 403
Query: 130 LQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGE----IVLDLNKEEDNYGEA 185
+++ + +A + ASLAL DAG+P++ VA A G ++ + ++ D+ +ED+ G+
Sbjct: 404 TESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDM 463
Query: 186 DVPVAIMPLKNDITLLQMDGYLTKDEFI--EAVKLAIKGAKA 225
D VA + +T LQMD K E I E +++A+ AK+
Sbjct: 464 DFKVA--GTRTGVTALQMD---IKIEGITAEIMQIALNQAKS 500
>pir||B75378 ribonuclease PH - Deinococcus radiodurans (strain R1)
>gi|6459349|gb|AAF11146.1|AE002002_4 (AE002002)
ribonuclease PH [Deinococcus radiodurans]
Length = 246
Score = 73.7 bits (178), Expect = 2e-12
Identities = 57/185 (30%), Positives = 91/185 (48%), Gaps = 15/185 (8%)
Query: 19 DGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVR 78
+GR RP+ ++ GV +A GSA+++ G+ +I+A V + P H++ L
Sbjct: 10 EGRDALTPRPVSVQRGVNPHAPGSAHLKMGRTEILATVTLDDKPAP-HMRGKKEGWLTAE 68
Query: 79 YNMAPFSVEERK---KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAG 135
Y+M P S +R+ + + R EI +++ AL ++ L F + V +VL AD G
Sbjct: 69 YSMLPRSTTDRQARERNLQNGRRHEIQRLLGRALRSSMDLRPFKNQTLYVDCDVLVADGG 128
Query: 136 TRVAGITAASLALAD-----------AGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGE 184
TRVA + A AL D + P+ V A + G I E+ +DL+ EED
Sbjct: 129 TRVASVLAGHAALHDFCDRLINSGQLSEWPIVHNVGAISVGLIGDELRVDLDYEEDKVAR 188
Query: 185 ADVPV 189
AD+ V
Sbjct: 189 ADLNV 193
>emb|CAA20272.1| (AL031231) guanosine pentaphosphate synthetase/ polyribonucleotide
nucleotidyltransferase [Streptomyces coelicolor A3(2)]
Length = 716
Score = 73.4 bits (177), Expect = 2e-12
Identities = 69/217 (31%), Positives = 102/217 (46%), Gaps = 19/217 (8%)
Query: 16 RRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAV---YGPRELHPKHLQRPDR 72
+RIDGR ++R + EV + +GSA E G+ +I+ E L R
Sbjct: 338 KRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397
Query: 73 AILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTAIDVFIEVL 130
YN P+SV E + G P RR I + + A+ P L E FP AI E L
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPY-AIRQVSEAL 456
Query: 131 QADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEI--------VLDLNKEEDNY 182
++ T + + A++++L +AG+P++ VA A G I EI + D+ ED +
Sbjct: 457 GSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEINGETHYVALTDILGAEDAF 516
Query: 183 GEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLA 219
G+ D VA K +T LQ+D TK + I A LA
Sbjct: 517 GDMDFKVA--GTKEFVTALQLD---TKLDGIPASVLA 548
>pir||T10932 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) alpha chain
[similarity] - Streptomyces coelicolor
Length = 739
Score = 73.4 bits (177), Expect = 2e-12
Identities = 69/217 (31%), Positives = 102/217 (46%), Gaps = 19/217 (8%)
Query: 16 RRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAV---YGPRELHPKHLQRPDR 72
+RIDGR ++R + EV + +GSA E G+ +I+ E L R
Sbjct: 338 KRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397
Query: 73 AILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTAIDVFIEVL 130
YN P+SV E + G P RR I + + A+ P L E FP AI E L
Sbjct: 398 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPY-AIRQVSEAL 456
Query: 131 QADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEI--------VLDLNKEEDNY 182
++ T + + A++++L +AG+P++ VA A G I EI + D+ ED +
Sbjct: 457 GSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEINGETHYVALTDILGAEDAF 516
Query: 183 GEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLA 219
G+ D VA K +T LQ+D TK + I A LA
Sbjct: 517 GDMDFKVA--GTKEFVTALQLD---TKLDGIPASVLA 548
>pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase
Gpsi Enzyme
Length = 757
Score = 73.4 bits (177), Expect = 2e-12
Identities = 69/217 (31%), Positives = 102/217 (46%), Gaps = 19/217 (8%)
Query: 16 RRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAV---YGPRELHPKHLQRPDR 72
+RIDGR ++R + EV + +GSA E G+ +I+ E L R
Sbjct: 355 KRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 414
Query: 73 AILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTAIDVFIEVL 130
YN P+SV E + G P RR I + + A+ P L E FP AI E L
Sbjct: 415 KRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPY-AIRQVSEAL 473
Query: 131 QADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEI--------VLDLNKEEDNY 182
++ T + + A++++L +AG+P++ VA A G I EI + D+ ED +
Sbjct: 474 GSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEINGETHYVALTDILGAEDAF 533
Query: 183 GEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLA 219
G+ D VA K +T LQ+D TK + I A LA
Sbjct: 534 GDMDFKVA--GTKEFVTALQLD---TKLDGIPASVLA 565
>pir||T44900 probable polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)
[imported] - Mycobacterium leprae
>gi|2342619|emb|CAB11392.1| (Z98741) guanosine
pentaphosphate synthetase/ polyribonucleotide
nucleotidyltransferase [Mycobacterium leprae]
Length = 777
Score = 73.0 bits (176), Expect = 3e-12
Identities = 64/208 (30%), Positives = 99/208 (46%), Gaps = 20/208 (9%)
Query: 14 NGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQR--PD 71
N RIDGR ++R + EV V+ A+GSA E G+ +I+ + + P+
Sbjct: 354 NHFRIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMVKMAQQIDSLGPE 413
Query: 72 RAILRVR-YNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTAIDVFIE 128
+ + YN PFS E + G P RR I + + AL P L +E FP AI E
Sbjct: 414 TSKRYMHHYNFPPFSTGETGRVGSPKRREIGHGALAERALVPVLPSVEEFPY-AIRQVSE 472
Query: 129 VLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKE---------- 178
L ++ T + + A++LAL +AG+P++ VA A G + ++ D E
Sbjct: 473 ALGSNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDVEFDGGTERRFVTLTDIL 532
Query: 179 --EDNYGEADVPVAIMPLKNDITLLQMD 204
ED +G+ D A K+ +T LQ+D
Sbjct: 533 GAEDAFGDMDFKCA--GTKDFVTALQLD 558
>gb|AAF00646.1|AC009540_23 (AC009540) putative polynucleotide phosphorylase [Arabidopsis
thaliana] >gi|6091752|gb|AAF03462.1|AC009327_1
(AC009327) putative polynucleotide phosphorylase
[Arabidopsis thaliana]
Length = 948
Score = 72.6 bits (175), Expect = 4e-12
Identities = 74/234 (31%), Positives = 116/234 (48%), Gaps = 26/234 (11%)
Query: 11 IDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAV-YGPRELHPK--HL 67
I E G+R DGR E+RPI G+L A+GS G+ + +A V G +++ + +L
Sbjct: 467 IVEGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNL 526
Query: 68 QRPDR-AILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPALIL-EMFPRTAID 124
+ D ++Y P SV E + G P RR I + + ALE L + FP T I
Sbjct: 527 EGSDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYT-IR 585
Query: 125 VFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI--------EGE--IVLD 174
V V++++ + +A + LAL DAG+P++ VA A G + +G I+ D
Sbjct: 586 VESTVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSD 645
Query: 175 LNKEEDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKA 225
+ ED G+ D VA ++ +T QMD G +T +E ++ A+ AKA
Sbjct: 646 ITGAEDASGDMDFKVA--GNEDGVTAFQMDIKVGGIT----LEIMEKALIQAKA 693
>emb|CAB85703.1| (AJ252123) putative polynucleotide phosphorylase [Arabidopsis
thaliana]
Length = 922
Score = 72.6 bits (175), Expect = 4e-12
Identities = 74/234 (31%), Positives = 116/234 (48%), Gaps = 26/234 (11%)
Query: 11 IDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAV-YGPRELHPK--HL 67
I E G+R DGR E+RPI G+L A+GS G+ + +A V G +++ + +L
Sbjct: 441 IVEGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNL 500
Query: 68 QRPDR-AILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPALIL-EMFPRTAID 124
+ D ++Y P SV E + G P RR I + + ALE L + FP T I
Sbjct: 501 EGSDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYT-IR 559
Query: 125 VFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI--------EGE--IVLD 174
V V++++ + +A + LAL DAG+P++ VA A G + +G I+ D
Sbjct: 560 VESTVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSD 619
Query: 175 LNKEEDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKA 225
+ ED G+ D VA ++ +T QMD G +T +E ++ A+ AKA
Sbjct: 620 ITGAEDASGDMDFKVA--GNEDGVTAFQMDIKVGGIT----LEIMEKALIQAKA 667
>gb|AAB17498.1| (U19858) guanosine pentaphosphate synthetase [Streptomyces
antibioticus]
Length = 740
Score = 72.2 bits (174), Expect = 5e-12
Identities = 69/217 (31%), Positives = 101/217 (45%), Gaps = 19/217 (8%)
Query: 16 RRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAV---YGPRELHPKHLQRPDR 72
+RIDGR ++R + EV + +GSA E G+ +I+ E L R
Sbjct: 338 KRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTR 397
Query: 73 AILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTAIDVFIEVL 130
YN P SV E + G P RR I + + A+ P L E FP AI E L
Sbjct: 398 KPYMHNYNFPPISVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPY-AIRQVSEAL 456
Query: 131 QADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEI--------VLDLNKEEDNY 182
++ T + + A++++L +AG+P++ VA A G I EI + D+ ED +
Sbjct: 457 GSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEINGETHYVALTDILGAEDAF 516
Query: 183 GEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLA 219
G+ D VA K +T LQ+D TK + I A LA
Sbjct: 517 GDMDFKVA--GTKEFVTALQLD---TKLDGIPASVLA 548
>pir||F70883 probable guanosine pentaphosphate synthetase and polyribonucleotide
nucleotidyltransferase - Mycobacterium tuberculosis
(strain H37RV) >gi|2624305|emb|CAA15578.1| (AL008967)
gpsI [Mycobacterium tuberculosis]
Length = 752
Score = 72.2 bits (174), Expect = 5e-12
Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 24/209 (11%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQR--PDRAI 74
RIDGR ++R + EV V+ A+GSA E G+ +I+ + + P+ +
Sbjct: 346 RIDGRGITDIRALSAEVAVVPRAHGSALFERGETQILGVTTLDMIKMAQQIDSLGPETSK 405
Query: 75 LRVR-YNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTAIDVFIEVLQ 131
+ YN PFS E + G P RR I + + AL P L +E FP AI E L
Sbjct: 406 RYMHHYNFPPFSTGETGRVGSPKRREIGHGALAERALVPVLPSVEEFPY-AIRQVSEALG 464
Query: 132 ADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEI----------------VLDL 175
++ T + + A++LAL +AG+P++ VA A G + +I + D+
Sbjct: 465 SNGSTSMGSVCASTLALLNAGVPLKAPVAGIAMGLVSDDIQVEGAVDGVVERRFVTLTDI 524
Query: 176 NKEEDNYGEADVPVAIMPLKNDITLLQMD 204
ED +G+ D VA K+ +T LQ+D
Sbjct: 525 LGAEDAFGDMDFKVA--GTKDFVTALQLD 551
>pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibioticus PnpaseGPSI
Enzyme
Length = 757
Score = 72.2 bits (174), Expect = 5e-12
Identities = 69/217 (31%), Positives = 100/217 (45%), Gaps = 19/217 (8%)
Query: 16 RRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAV---YGPRELHPKHLQRPDR 72
+RIDGR ++R + EV + +GSA E G+ +I+ E L R
Sbjct: 355 KRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNXLRXEQQLDTLSPVTR 414
Query: 73 AILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPAL-ILEMFPRTAIDVFIEVL 130
YN P+SV E + G P RR I + + A+ P L E FP AI E L
Sbjct: 415 KRYXHNYNFPPYSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPY-AIRQVSEAL 473
Query: 131 QADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEI--------VLDLNKEEDNY 182
++ T + A++ +L +AG+P++ VA A G I EI + D+ ED +
Sbjct: 474 GSNGSTSXGSVCASTXSLLNAGVPLKAPVAGIAXGLISQEINGETHYVALTDILGAEDAF 533
Query: 183 GEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLA 219
G+ D VA K +T LQ+D TK + I A LA
Sbjct: 534 GDXDFKVA--GTKEFVTALQLD---TKLDGIPASVLA 565
>pir||E71463 probable polyribonucleotide nucleotidyltransferase - Chlamydia
trachomatis (serotype D, strain UW3/Cx)
>gi|3329314|gb|AAC68439.1| (AE001357) Polyribonucleotide
Nucleotidyltransferase [Chlamydia trachomatis]
Length = 695
Score = 71.0 bits (171), Expect = 1e-11
Identities = 64/208 (30%), Positives = 97/208 (45%), Gaps = 20/208 (9%)
Query: 10 LIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIA-AVYGPRELHPK--H 66
LI + G R+DGR E+RPI +E L +GS G+ + +A G + +
Sbjct: 308 LIQDLGIRVDGRTTTEIRPISIETPFLPRTHGSCLFTRGETQSMAVCTLGGENMAQRFED 367
Query: 67 LQRPDRAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPALILEMFPRTAIDV 125
L A ++Y PFSV E + G P RR I K+ + AL L P T+
Sbjct: 368 LNGDGAARFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHVL-----PETSRFP 422
Query: 126 FI-----EVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI----EGEIVLDLN 176
+I + +++ + +A + LAL DAG+P++ VA A G I + I+ D++
Sbjct: 423 YIIRLESNITESNGSSSMASVCGGCLALMDAGVPIKAPVAGIAMGLILDRDQAIILSDIS 482
Query: 177 KEEDNYGEADVPVAIMPLKNDITLLQMD 204
ED+ G+ D VA IT QMD
Sbjct: 483 GIEDHLGDMDFKVA--GTAKGITAFQMD 508
>pir||T06540 polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) - garden pea
>gi|2286200|gb|AAC50039.1| (AF010578) polynucleotide
phosphorylase [Pisum sativum]
Length = 897
Score = 70.6 bits (170), Expect = 2e-11
Identities = 71/245 (28%), Positives = 115/245 (45%), Gaps = 22/245 (8%)
Query: 9 KLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIA-AVYGPRELHPK-- 65
K I E G+R DGR E+RPI +L A+GSA G+ + +A A G ++ +
Sbjct: 436 KRIVEGGKRSDGRTPKEIRPINSSCSILPRAHGSALFTRGETQALAVATLGDNKMAQRIN 495
Query: 66 -HLQRPDRAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPALILEM-FPRTA 122
++ D ++Y+ P V E + G P RR I + + +LE L + FP T
Sbjct: 496 NLIEVDDYKRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLETILPSDNDFPYT- 554
Query: 123 IDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI--------EGE--IV 172
I V + +++ + +A + LAL DAG+P++ +A A G + +G I+
Sbjct: 555 IRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLVLDTKEFGGDGTPLIL 614
Query: 173 LDLNKEEDNYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAVYQK 229
D+ ED G+ D VA ++ IT QMD +T EA+ A G K + +
Sbjct: 615 SDITGSEDASGDMDFKVA--GNEDGITAFQMDIKVAGITLPIMREALLQARDGRKHILGE 672
Query: 230 QREAL 234
++L
Sbjct: 673 MMKSL 677
>pir||H81943 probable polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)
NMA0969 [imported] - Neisseria meningitidis (group A
strain Z2491) >gi|7379672|emb|CAB84239.1| (AL162754)
putative polyribonucleotide nucleotidyltransferase
[Neisseria meningitidis Z2491]
Length = 706
Score = 70.6 bits (170), Expect = 2e-11
Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 14/198 (7%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIA-AVYGPRE----LHPKHLQRPD 71
RIDGR +RP+ ++ GVL +GSA G+ + +A A G + + D
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 375
Query: 72 RAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVL 130
R +L YN P+S E + G P RR I ++ K AL L + V E+
Sbjct: 376 RFML--HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEIT 433
Query: 131 QADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEAD 186
+++ + +A + L+L AG+P++ VA A G I EG ++ D+ +ED+ G+ D
Sbjct: 434 ESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMD 493
Query: 187 VPVAIMPLKNDITLLQMD 204
VA +T LQMD
Sbjct: 494 FKVA--GTTEGVTALQMD 509
>pir||E64671 polynucleotide phosphorylase - Helicobacter pylori (strain 26695)
>gi|2314375|gb|AAD08258.1| (AE000627) polynucleotide
phosphorylase (pnp) [Helicobacter pylori 26695]
Length = 688
Score = 69.5 bits (167), Expect = 4e-11
Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 17/248 (6%)
Query: 2 MEKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNK-IIAAVYGPR 60
++K E ++I ++ R D R E+RPI +E +L A+ S G+ + ++ V G
Sbjct: 299 VKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTD 358
Query: 61 ELHPKHLQRPDRAILRVR----YNMAPFSVEERKKPGP-DRRSIEISKVIKGALEPALIL 115
H +A ++ R YN PF V E G RR + + K ALE ++
Sbjct: 359 NDAQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRALETSIKN 418
Query: 116 EMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---I 171
+ I + E+L+++ + +A + A SLAL +G+ + DLVA A G + EG+ I
Sbjct: 419 K---EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAI 475
Query: 172 VLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLT--KDEFIEAVKLAIKGAKAVYQK 229
+ D++ ED G+ D +A IT +QMD ++ K E + L K A+ K
Sbjct: 476 LSDISGLEDAEGDMDFKIA--GNLEGITAMQMDTKMSGIKLEILYQALLQAKEARKHILK 533
Query: 230 QREALKEK 237
KEK
Sbjct: 534 IMHEAKEK 541
>pir||G72009 polyribonucleotide nucleotidyltransferase CP0855 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4377328|gb|AAD19136.1| (AE001680) Polyribonucleotide
Nucleotidyltransferase [Chlamydophila pneumoniae CWL029]
>gi|7189766|gb|AAF38644.1| (AE002244) polyribonucleotide
nucleotidyltransferase [Chlamydophila pneumoniae AR39]
>gi|8979372|dbj|BAA99206.1| (AP002548)
polyribonucleotide nucleotidyltransferase [Chlamydophila
pneumoniae J138]
Length = 694
Score = 69.5 bits (167), Expect = 4e-11
Identities = 70/246 (28%), Positives = 112/246 (45%), Gaps = 15/246 (6%)
Query: 10 LIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAA-VYGPRELHPKHLQ 68
LI + R DGR +RPI +E L +GS G+ + +A G + ++
Sbjct: 308 LIRDREIRADGRSLTTVRPITIETSYLPRTHGSCLFTRGETQTLAVCTLGSEAMAQRYED 367
Query: 69 RPDRAILR--VRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPALI-LEMFPRTAID 124
+ + ++Y PFSV E + G P RR I K+ + AL AL FP T I
Sbjct: 368 LNGEGLSKFYLQYFFPPFSVGEVGRIGSPGRREIGHGKLAEKALSHALPDSATFPYT-IR 426
Query: 125 VFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI---EGEIVL-DLNKEED 180
+ + +++ + +A + LAL DAG+P+ +A A G I +G I+L D++ ED
Sbjct: 427 IESNITESNGSSSMASVCGGCLALMDAGVPISSPIAGIAMGLILDDQGAIILSDISGLED 486
Query: 181 NYGEADVPVAIMPLKNDITLLQMD---GYLTKDEFIEAVKLAIKGAKAVYQKQREALKEK 237
+ G+ D +A IT QMD +T +A+ A +G + EAL
Sbjct: 487 HLGDMDFKIA--GSGKGITAFQMDIKVEGITPAIMKKALSQAKQGCNDILNIMNEALSAP 544
Query: 238 YLKIAQ 243
++Q
Sbjct: 545 KADLSQ 550
>pir||E71845 polyribonucleotide nucleotidyltransferase - Helicobacter pylori
(strain J99) >gi|4155738|gb|AAD06718.1| (AE001541)
POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter
pylori J99]
Length = 688
Score = 68.3 bits (164), Expect = 8e-11
Identities = 69/248 (27%), Positives = 115/248 (45%), Gaps = 17/248 (6%)
Query: 2 MEKPEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNK-IIAAVYGPR 60
++K E ++I ++ R D R E+RPI +E +L A+ S G+ + ++ V G
Sbjct: 299 VKKTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGMD 358
Query: 61 ELHPKHLQRPDRAILRVR----YNMAPFSVEERKKPGP-DRRSIEISKVIKGALEPALIL 115
H +A ++ R YN PF V E G RR + + K ALE ++
Sbjct: 359 NDAQTHENLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKN 418
Query: 116 EMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI----EGEI 171
+ I + E+L+++ + +A + A SLAL +G+ + DLVA A G + + I
Sbjct: 419 K---EQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIHDLVAGVAMGMVSERQDHAI 475
Query: 172 VLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLT--KDEFIEAVKLAIKGAKAVYQK 229
+ D++ ED G+ D +A IT +QMD ++ + E + L K A+ K
Sbjct: 476 LSDISGLEDAEGDMDFKIA--GNLEGITAMQMDTKMSGIQLEVLYQALLQAKRARKHILK 533
Query: 230 QREALKEK 237
KEK
Sbjct: 534 IMHEAKEK 541
>pir||C81161 polyribonucleotide nucleotidyltransferase NMB0758 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7225988|gb|AAF41171.1| (AE002430) polyribonucleotide
nucleotidyltransferase [Neisseria meningitidis MC58]
Length = 707
Score = 68.3 bits (164), Expect = 8e-11
Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 14/198 (7%)
Query: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIA-AVYGPRE----LHPKHLQRPD 71
RIDGR +RP+ ++ VL +GSA G+ + +A A G + + D
Sbjct: 317 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVATLGTSRDEQIIDALSGEYTD 376
Query: 72 RAILRVRYNMAPFSVEERKKPG-PDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVL 130
R +L YN P+S E + G P RR I ++ K AL L + V E+
Sbjct: 377 RFML--HYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEIT 434
Query: 131 QADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGE---IVLDLNKEEDNYGEAD 186
+++ + +A + L+L AG+P++ VA A G I EG ++ D+ +ED+ G+ D
Sbjct: 435 ESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMD 494
Query: 187 VPVAIMPLKNDITLLQMD 204
VA +T LQMD
Sbjct: 495 FKVA--GTTEGVTALQMD 510
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.137 0.379
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89261604
Number of Sequences: 2977
Number of extensions: 3668329
Number of successful extensions: 9866
Number of sequences better than 1.0e-10: 86
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 9718
Number of HSP's gapped (non-prelim): 110
length of query: 249
length of database: 189,106,746
effective HSP length: 58
effective length of query: 191
effective length of database: 154,394,500
effective search space: 29489349500
effective search space used: 29489349500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)