BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0421 (PAB0421) DE:POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
related protein
(274 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75181 polyribonucleotide nucleotidyltransferase related pr... 535 e-151
pir||D71032 probable autoantigen like protein - Pyrococcus horik... 505 e-142
gi|11498105 conserved hypothetical protein [Archaeoglobus fulgid... 260 1e-68
pir||H69190 conserved hypothetical protein MTH682 - Methanobacte... 257 9e-68
emb|CAC12416.1| (AL445067) rRNA processing protein (yeast RRP45)... 243 2e-63
pir||E72623 probable autoantigen APE1445 - Aeropyrum pernix (str... 237 1e-61
emb|CAB57571.1| (Y18930) conserved hypothetical protein [Sulfolo... 229 3e-59
gb|AAK41030.1| Conserved hypothetical protein [Sulfolobus solfat... 229 3e-59
pir||T47861 nucleolar autoantigen-like protein - Arabidopsis tha... 189 3e-47
gb|AAF35948.1| (AC024128) unknown protein [Arabidopsis thaliana] 180 2e-44
gb|AAC39558.1| (AF025438) Opa-interacting protein OIP2 [Homo sap... 160 2e-38
gi|9506981 polymyositis/scleroderma autoantigen 1 [Mus musculus]... 153 1e-36
pir||T41599 75K autoantigen homolog - fission yeast (Schizosacch... 150 1e-35
dbj|BAA06226.1| (D29958) KIAA0116 [Homo sapiens] 146 2e-34
gb|AAF21185.1|AC013483_9 (AC013483) putative 3' exoribonuclease ... 134 1e-30
gb|AAF13093.1|AC009176_20 (AC009176) hypothetical protein [Arabi... 132 4e-30
gb|AAD14485.1| (AC005966) Similar to gb|AF025438 Opa-interacting... 132 5e-30
gi|6320486 Putative 3'->5' exoribonuclease; component of exosome... 130 2e-29
gb|AAF58076.1| (AE003808) CG8395 gene product [Drosophila melano... 129 5e-29
gi|4826922 polymyositis/scleroderma autoantigen 1 (75kD) [Homo s... 120 2e-26
pir||G01425 nucleolar 75K autoantigen PM-Scl - human >gi|497643|... 120 2e-26
pir||T28842 hypothetical protein F37C12.13 - Caenorhabditis eleg... 119 3e-26
sp|Q10205|YBX3_SCHPO HYPOTHETICAL 30.0 KD PROTEIN C17D1.03C IN C... 111 7e-24
gb|AAF48665.1| (AE003503) CG9606 gene product [Drosophila melano... 103 2e-21
pir||G72623 probable ribonuclease PH APE1447 - Aeropyrum pernix ... 76 3e-13
pir||T21601 hypothetical protein F31D4.1 - Caenorhabditis elegan... 75 1e-12
>pir||F75181 polyribonucleotide nucleotidyltransferase related protein PAB0421 -
Pyrococcus abyssi (strain Orsay)
>gi|5458043|emb|CAB49533.1| (AJ248284)
POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE related
protein [Pyrococcus abyssi]
Length = 274
Score = 535 bits (1364), Expect = e-151
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MSDNEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVL 60
MSDNEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVL
Sbjct: 1 MSDNEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVL 60
Query: 61 VGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKAL 120
VGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKAL
Sbjct: 61 VGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKAL 120
Query: 121 NLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVET 180
NLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVET
Sbjct: 121 NLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVET 180
Query: 181 LDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGG 240
LDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGG
Sbjct: 181 LDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGG 240
Query: 241 AFKLEEVMYAVETAFKKAEEIRKLILEAVEKAKQ 274
AFKLEEVMYAVETAFKKAEEIRKLILEAVEKAKQ
Sbjct: 241 AFKLEEVMYAVETAFKKAEEIRKLILEAVEKAKQ 274
>pir||D71032 probable autoantigen like protein - Pyrococcus horikoshii
>gi|3257977|dbj|BAA30660.1| (AP000006) 274aa long
hypothetical autoantigen like protein [Pyrococcus
horikoshii]
Length = 274
Score = 505 bits (1286), Expect = e-142
Identities = 250/272 (91%), Positives = 267/272 (97%)
Query: 1 MSDNEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVL 60
MSDNEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVG+IEKAEGSALVKLGSTQVL
Sbjct: 1 MSDNEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGIIEKAEGSALVKLGSTQVL 60
Query: 61 VGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKAL 120
VGIKT+LGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARV DRGIRES+AL
Sbjct: 61 VGIKTTLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVTDRGIRESRAL 120
Query: 121 NLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVET 180
NLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIA+IAALLNA+VPKV YNEETGEVE
Sbjct: 121 NLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIASIAALLNAKVPKVEYNEETGEVEI 180
Query: 181 LDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGG 240
L+E EPLPVE+IP+PVTFAKIGNILVVDPSL+EELVMDG++T+TTDETGHISAVQK EGG
Sbjct: 181 LEEKEPLPVERIPIPVTFAKIGNILVVDPSLEEELVMDGRLTVTTDETGHISAVQKGEGG 240
Query: 241 AFKLEEVMYAVETAFKKAEEIRKLILEAVEKA 272
AFKLEEVMYAVETAFKKAEEIRK++LEA++K+
Sbjct: 241 AFKLEEVMYAVETAFKKAEEIRKIVLEAIKKS 272
>gi|11498105 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451250|pir||F69311 conserved hypothetical protein
AF0494 - Archaeoglobus fulgidus
>gi|2650132|gb|AAB90743.1| (AE001070) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 259
Score = 260 bits (658), Expect = 1e-68
Identities = 136/265 (51%), Positives = 189/265 (71%), Gaps = 12/265 (4%)
Query: 5 EIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIK 64
+I+ I RD++++ L++ +RID RGF+++R +EI VIEKAEGSALVKLG TQV+VG+K
Sbjct: 4 DILVDIKRDYVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVK 63
Query: 65 TSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEK 124
GEP+PDTP+ GV+ N ELVPLASPTFEPGPPDE +IELARV+DRGIRES+A++L K
Sbjct: 64 MQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSK 123
Query: 125 MVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDET 184
+VI G+ V +VF+D+H LD DGNL+DA +AAIAAL+N +VP R++ L E
Sbjct: 124 LVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFD--------LGED 175
Query: 185 EPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKL 244
LPV +PV VT +GN +VDPS +E V D +TITTD+ ++ A+QKS G + L
Sbjct: 176 YLLPVRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKS--GGYLL 233
Query: 245 EEVMY--AVETAFKKAEEIRKLILE 267
+E ++ ++ + A ++R+ E
Sbjct: 234 DEKLFDELLDVSINCARKLREKFKE 258
>pir||H69190 conserved hypothetical protein MTH682 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621767|gb|AAB85187.1| (AE000848) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 271
Score = 257 bits (650), Expect = 9e-68
Identities = 128/258 (49%), Positives = 183/258 (70%), Gaps = 3/258 (1%)
Query: 5 EIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIK 64
+I+ I R I +L+ +RID R ++R I IE GVI KAEGS+ VKLG+TQ++VG+K
Sbjct: 6 DIIPEITRKSITDLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVK 65
Query: 65 TSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEK 124
+GEPFPDTP MGV+ TN EL+P+ASPTFEPGPPDER++EL+RV+DR IRES+ ++LEK
Sbjct: 66 PQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEK 125
Query: 125 MVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVE-TLDE 183
+ I+ G V ++F+D+H++D+DGNL DA +A +AALL+ R+P E GEV ++
Sbjct: 126 LCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEV--EDGEVVINREK 183
Query: 184 TEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFK 243
+PLPV + + TFAKIGN +V+DPSL+EE ++ +I+I E G I A+QK G
Sbjct: 184 MQPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLT 243
Query: 244 LEEVMYAVETAFKKAEEI 261
++V+ AV A +K ++
Sbjct: 244 RDDVLKAVSIAVEKVPQL 261
>emb|CAC12416.1| (AL445067) rRNA processing protein (yeast RRP45) related protein
[Thermoplasma acidophilum]
Length = 240
Score = 243 bits (613), Expect = 2e-63
Identities = 127/245 (51%), Positives = 176/245 (71%), Gaps = 9/245 (3%)
Query: 19 LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMG 78
+K GKRID R +++R + I I +A GSA V LG+T+V+ G+K GEPFPDTP+ G
Sbjct: 1 MKGGKRIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEPFPDTPDQG 60
Query: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFI 138
V+TTNVEL+P+A P+FE GPP++ AIE++RV+DRGIRESK ++ EK+VI GK V +VF+
Sbjct: 61 VLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVFL 120
Query: 139 DVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVTF 198
D++VLD+DGNL+DA IAA+AAL NA VP ++E G E LPV P+ VT
Sbjct: 121 DINVLDYDGNLIDASTIAAVAALRNAVVPA---SKEGG------EDFKLPVSSTPISVTM 171
Query: 199 AKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYAVETAFKKA 258
KIG+ LV DPSL+E+ + G+IT+TT E GHI A+QK E GAF +E+V AV+ + +
Sbjct: 172 VKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQKGEIGAFTVEDVKKAVKMSLEVG 231
Query: 259 EEIRK 263
+++R+
Sbjct: 232 KKLRE 236
>pir||E72623 probable autoantigen APE1445 - Aeropyrum pernix (strain K1)
>gi|5105129|dbj|BAA80443.1| (AP000061) 276aa long
hypothetical autoantigen [Aeropyrum pernix]
Length = 276
Score = 237 bits (598), Expect = 1e-61
Identities = 130/266 (48%), Positives = 179/266 (66%), Gaps = 9/266 (3%)
Query: 10 IMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGE 69
I+R+ ++LL++G R DR + R ++IE G+IEKAEGSALVKLG TQV+ G+K +G
Sbjct: 14 IVREAYLSLLRKGWRPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGA 73
Query: 70 PFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVP 129
PF DTPN GV+T + E VPLASP FEPGPPDE AIELARV+DR +RE A++LE +VI P
Sbjct: 74 PFKDTPNQGVLTVHAEFVPLASPVFEPGPPDENAIELARVVDRSLREVGAVDLESLVIRP 133
Query: 130 GKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNE-ETGEV--ETLDETEP 186
G+ V V+++D++++DHDGNL DA +A +A LL AR+P RY E ETGE+ E E
Sbjct: 134 GEKVWVLWVDLYIIDHDGNLFDASMLATMAVLLTARLP--RYEESETGEIIISKEGEGEE 191
Query: 187 LPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEE 246
L V+ V VT AKI +VVDP+++EE V D ++ DE G I +QK+ G+ +
Sbjct: 192 LKVKTRVVTVTTAKIDRYIVVDPNIEEEAVSDVRLVTAVDENGRIVGLQKTGMGSLTEAD 251
Query: 247 VMYAVETAFKKAEEIRKLILEAVEKA 272
+ET + E K+ +A+E+A
Sbjct: 252 ----IETMIGYSLEASKVYFKALEEA 273
>emb|CAB57571.1| (Y18930) conserved hypothetical protein [Sulfolobus solfataricus]
Length = 275
Score = 229 bits (578), Expect = 3e-59
Identities = 123/266 (46%), Positives = 172/266 (64%), Gaps = 4/266 (1%)
Query: 2 SDNEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLV 61
S+ I+ I ++ I++L ++G R D R DYRP+ I + +KA+GSALVKLG+T VL
Sbjct: 6 SNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLA 65
Query: 62 GIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALN 121
G K + +P+ DTPN G + NVEL+PLA TFEPGPPDE AIELARV+DR +R+SKAL+
Sbjct: 66 GTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALD 125
Query: 122 LEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETL 181
L K+VI PGK V V++DV+VLD+ GN++DA +A++AAL N +V KV + V
Sbjct: 126 LTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKN 185
Query: 182 DETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGA 241
+ LP+ V ++ AK+ LVVDP LDEE +MD KI+ + I +QKS G+
Sbjct: 186 EVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGS 245
Query: 242 FKLEEVMYAV----ETAFKKAEEIRK 263
L+++ A TA K EE++K
Sbjct: 246 MSLQDIDQAENTARSTAVKLLEELKK 271
>gb|AAK41030.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 275
Score = 229 bits (578), Expect = 3e-59
Identities = 123/266 (46%), Positives = 172/266 (64%), Gaps = 4/266 (1%)
Query: 2 SDNEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLV 61
S+ I+ I ++ I++L ++G R D R DYRP+ I + +KA+GSALVKLG+T VL
Sbjct: 6 SNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLA 65
Query: 62 GIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALN 121
G K + +P+ DTPN G + NVEL+PLA TFEPGPPDE AIELARV+DR +R+SKAL+
Sbjct: 66 GTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALD 125
Query: 122 LEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETL 181
L K+VI PGK V V++DV+VLD+ GN++DA +A++AAL N +V KV + V
Sbjct: 126 LTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKN 185
Query: 182 DETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGA 241
+ LP+ V ++ AK+ LVVDP LDEE +MD KI+ + I +QKS G+
Sbjct: 186 EVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGS 245
Query: 242 FKLEEVMYAV----ETAFKKAEEIRK 263
L+++ A TA K EE++K
Sbjct: 246 MSLQDIDQAENTARSTAVKLLEELKK 271
>pir||T47861 nucleolar autoantigen-like protein - Arabidopsis thaliana
>gi|7287998|emb|CAB81836.1| (AL138646) nucleolar
autoantigen-like protein [Arabidopsis thaliana]
Length = 438
Score = 189 bits (475), Expect = 3e-47
Identities = 105/259 (40%), Positives = 155/259 (59%), Gaps = 10/259 (3%)
Query: 19 LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMG 78
L+ R+D RG DYR + I+ G K GS+ V+LG T V+ + L +P+ D PN G
Sbjct: 23 LQSELRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFVTAQLVQPYKDRPNEG 79
Query: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFI 138
++ E P+A P+FEPG P E A+EL R+IDRG+RES+A++ E + ++ GK+V V I
Sbjct: 80 SLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKMVWSVRI 139
Query: 139 DVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGE---VETLDETEPLP--VEKIP 193
D+H+LD+ GNL+DA IAA+AAL+ R P E G+ + L+E EPLP + +P
Sbjct: 140 DLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIHPLEEREPLPLIIHHLP 199
Query: 194 VPVTFA--KIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYAV 251
+ TF GNI+V+DP+ EE VM G++T+T + G I A+QK +++ +
Sbjct: 200 IAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEGVNQSVILHCL 259
Query: 252 ETAFKKAEEIRKLILEAVE 270
A +A K+I E VE
Sbjct: 260 RLASSRAAATTKIIREEVE 278
>gb|AAF35948.1| (AC024128) unknown protein [Arabidopsis thaliana]
Length = 307
Score = 180 bits (451), Expect = 2e-44
Identities = 99/259 (38%), Positives = 152/259 (58%), Gaps = 10/259 (3%)
Query: 19 LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMG 78
L+ R+D RG DYR + I+ G K GS+ V+LG T V+ + L +P+ D P+ G
Sbjct: 23 LQSELRVDGRGLYDYRKLTIKFG---KEYGSSQVQLGQTHVMAFVTAQLVQPYKDRPSEG 79
Query: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFI 138
+ E P+A P+FEPG P E A+EL R+IDR +RES+A++ E + ++ GK+V V I
Sbjct: 80 SFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKLVWSVRI 139
Query: 139 DVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGE---VETLDETEPLP--VEKIP 193
D+H+LD+ GNL+DA +AA+AAL+ R P + + + +E EPLP + +P
Sbjct: 140 DLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPEEREPLPLIIHHLP 199
Query: 194 VPVTFA--KIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYAV 251
+ TF G+ILV+DP+ EE VM G++T+T + G I A+QK +++ +
Sbjct: 200 IAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNANGDICAIQKPGEEGVNQSVILHCL 259
Query: 252 ETAFKKAEEIRKLILEAVE 270
A +A K+I +AVE
Sbjct: 260 RLASSRASATTKIIRDAVE 278
>gb|AAC39558.1| (AF025438) Opa-interacting protein OIP2 [Homo sapiens]
Length = 265
Score = 160 bits (400), Expect = 2e-38
Identities = 91/247 (36%), Positives = 137/247 (54%), Gaps = 2/247 (0%)
Query: 19 LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMG 78
LKE R D R ++R + +G I A+GSALVKLG+T V+ G+K P D P+ G
Sbjct: 16 LKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKG 75
Query: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFI 138
+ NV+L PL S F GPP E A ++ I I S+ + E + I PGK+V V++
Sbjct: 76 YVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYC 135
Query: 139 DVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVE-TLDETEPLPVEKIPVPVT 197
D+ LD+DGN++DA A +AAL N ++P+V NEET E L + L + PV +
Sbjct: 136 DLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATS 195
Query: 198 FAKIGN-ILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYAVETAFK 256
FA + +L+VDP+ +EE + G +TI DE G + + K G ++ + A
Sbjct: 196 FAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRAVT 255
Query: 257 KAEEIRK 263
+ +E++K
Sbjct: 256 RHKEVKK 262
>gi|9506981 polymyositis/scleroderma autoantigen 1 [Mus musculus]
>gi|8132103|gb|AAF73218.1|AF152841_1 (AF152841)
polymyositis scleroderma overlap syndrome (PM-SCL)
antigen 1 a [Mus musculus]
>gi|8132105|gb|AAF73219.1|AF152842_1 (AF152842)
polymyositis scleroderma overlap syndrome (PM-SCL)
antigen 1 b [Mus musculus]
Length = 438
Score = 153 bits (384), Expect = 1e-36
Identities = 93/263 (35%), Positives = 149/263 (56%), Gaps = 7/263 (2%)
Query: 12 RDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPF 71
R ++ ++E KR+D R DYR I I G G +V+LG T+VL + L P
Sbjct: 11 RRFLLRAIEEKKRLDGRQTYDYRNIRISFGT---DYGCCIVELGKTRVLGQVSCELVSPK 67
Query: 72 PDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGK 131
+ G++ N+EL +A+P FEPG + ++L R+++R +R SK ++ E + +V G+
Sbjct: 68 LNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLLERCLRNSKCIDTESLCVVAGE 127
Query: 132 IVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLP--V 189
V + +D+H+L+HDGN++DA IAAI AL + R P V E + T +E +P+P +
Sbjct: 128 KVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGEEVTLYTPEERDPVPLSI 187
Query: 190 EKIPVPVTFA--KIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEV 247
+P+ V+FA + G L+VDP+ EE VMDG + I ++ I +Q S G ++V
Sbjct: 188 HHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQV 247
Query: 248 MYAVETAFKKAEEIRKLILEAVE 270
+ A K EI +LI +A+E
Sbjct: 248 FRCSKIAGVKVAEITELIQKALE 270
>pir||T41599 75K autoantigen homolog - fission yeast (Schizosaccharomyces pombe)
>gi|3702641|emb|CAA21233.1| (AL031825) similar to yeast
exosome 3'-5' exoribonuclease complex component;
involved in 3'-end processing of multiple small RNA
species [Schizosaccharomyces pombe]
Length = 291
Score = 150 bits (376), Expect = 1e-35
Identities = 84/264 (31%), Positives = 149/264 (55%), Gaps = 7/264 (2%)
Query: 12 RDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPF 71
++ ++N L++G R+D R D+R +EI+ G K G V G T+V+ I T + +P+
Sbjct: 12 KEFVLNSLEKGLRLDGRQLSDFRSLEIQFG---KEYGQVDVSFGHTRVMARITTEITKPY 68
Query: 72 PDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGK 131
D P G+ + EL PLA FE G ++ I ++R+I++ +R S AL+ E + I+ G+
Sbjct: 69 TDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCIISGQ 128
Query: 132 IVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLPVEK 191
V VH ++HDGNL+DA IA IAAL + R P++ E V ++E P+P+
Sbjct: 129 KCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGEEVTVHPVEERVPVPLSI 188
Query: 192 IPVPV----TFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEV 247
+ +P+ +F G + +VD +L+EE + +G +TIT ++ + + K+ G ++
Sbjct: 189 LHMPICVTFSFFNNGELAIVDATLEEEDLCNGSMTITLNKNREVCQIYKAGGIIIDPSKI 248
Query: 248 MYAVETAFKKAEEIRKLILEAVEK 271
+ +TAF A + +I +A+++
Sbjct: 249 ISCAKTAFDIAVSVCSVIQQALDE 272
>dbj|BAA06226.1| (D29958) KIAA0116 [Homo sapiens]
Length = 290
Score = 146 bits (366), Expect = 2e-34
Identities = 89/262 (33%), Positives = 143/262 (53%), Gaps = 7/262 (2%)
Query: 14 HIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPD 73
+I++ ++E R+D RG EDYR +E+E V+ GSA VKLG T +LVG+K +G P +
Sbjct: 12 YIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLE 71
Query: 74 TPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIV 133
PN G + V+ A+P FE D+ E+A + R +++L+ + I P +
Sbjct: 72 KPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHC 131
Query: 134 RVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEE---TGEVETLDETEP---L 187
V+++DV +L+ GNL DAI IA AAL N R+P+VR E+ + ++E D+ L
Sbjct: 132 WVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRL 191
Query: 188 PVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEV 247
VE +P VT KIG VVD +L EE + ++ G ++ ++K G+ E +
Sbjct: 192 SVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVGKGSLDPESI 251
Query: 248 MYAVETAFKKAEEIRKLILEAV 269
+ET K+ ++ L++V
Sbjct: 252 FEMMETG-KRVGKVLHASLQSV 272
>gb|AAF21185.1|AC013483_9 (AC013483) putative 3' exoribonuclease [Arabidopsis thaliana]
Length = 293
Score = 134 bits (333), Expect = 1e-30
Identities = 83/268 (30%), Positives = 130/268 (47%), Gaps = 18/268 (6%)
Query: 24 RIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMGVMTTN 83
R D R YRPI +E GVI +A GSA V++G T V+ +K +G P P+ G +
Sbjct: 20 RTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQPDKGKVAVF 79
Query: 84 VELVPLASPTFEPGPPDERAIELARVIDRGIRESKA------------LNLEKMVIVPGK 131
++ P A PTF +E + ELA + R + K+ +NL ++I GK
Sbjct: 80 IDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAAIHVLVPGAGINLSSLLIKEGK 139
Query: 132 IVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRY-----NEETGEVETLDETE- 185
+ ++ID V+ DGNL+DA+G A AAL N +PKV ++E E++ DE
Sbjct: 140 VCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEIDISDEEYL 199
Query: 186 PLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLE 245
+PV VT K+G +VD + +EE M ++I+ + TGHI + K G
Sbjct: 200 QFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRSGSGLDPS 259
Query: 246 EVMYAVETAFKKAEEIRKLILEAVEKAK 273
++ + A E + + + A+
Sbjct: 260 VILDMISVAKHVTETLMSKLDSEISAAE 287
>gb|AAF13093.1|AC009176_20 (AC009176) hypothetical protein [Arabidopsis thaliana]
Length = 297
Score = 132 bits (329), Expect = 4e-30
Identities = 84/272 (30%), Positives = 131/272 (47%), Gaps = 22/272 (8%)
Query: 24 RIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMGVMTTN 83
R D R YRPI +E GVI +A GSA V++G T V+ +K +G P P+ G +
Sbjct: 20 RTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQPDKGKVAVF 79
Query: 84 VELVPLASPTFEPGPPDERAIELARVIDR---------GIRES-------KALNLEKMVI 127
++ P A PTF +E + ELA + R G++ S +NL ++I
Sbjct: 80 IDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGLQSSIHVLVPGAGINLSSLLI 139
Query: 128 VPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRY-----NEETGEVETLD 182
GK+ ++ID V+ DGNL+DA+G A AAL N +PKV ++E E++ D
Sbjct: 140 KEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEIDISD 199
Query: 183 ETE-PLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGA 241
E +PV VT K+G +VD + +EE M ++I+ + TGHI + K G
Sbjct: 200 EEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGLTKRSGSG 259
Query: 242 FKLEEVMYAVETAFKKAEEIRKLILEAVEKAK 273
++ + A E + + + A+
Sbjct: 260 LDPSVILDMISVAKHVTETLMSKLDSEISAAE 291
>gb|AAD14485.1| (AC005966) Similar to gb|AF025438 Opa-interacting protein (OIP2)
from Homo sapiens. [Arabidopsis thaliana]
Length = 302
Score = 132 bits (328), Expect = 5e-30
Identities = 81/267 (30%), Positives = 137/267 (50%), Gaps = 18/267 (6%)
Query: 19 LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMG 78
L E R D R R + +G++ A+GSAL K+GST +L I+ + P D+P+ G
Sbjct: 32 LSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPSTDSPDEG 91
Query: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFI 138
+ + P+ SPT PG P E A +++ + I S ++L+++ +V GK + ++
Sbjct: 92 CIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDTILSSGMIDLKELCLVSGKAAWMGYL 151
Query: 139 DVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEE------TGEVE-----------TL 181
D++ LD DG L DA +AA+AA N ++P V N+ TGE +
Sbjct: 152 DIYCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEKDQDNALITEKEAVN 211
Query: 182 DETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGA 241
E L ++ IP +T N ++ DP+ +EE +MD +T+ D + + + KS G A
Sbjct: 212 KEKRKLTLKNIPFSLTCILHKNYILADPTTEEESIMDTLVTVVLDSSDQMVSFYKSGGAA 271
Query: 242 FKLEE-VMYAVETAFKKAEEIRKLILE 267
+ VE A K+A+E+++++ E
Sbjct: 272 LAYSSAIKSCVELARKRAKELKQILGE 298
>gi|6320486 Putative 3'->5' exoribonuclease; component of exosome complex of
3'->5' exonucleases; Rrp45p [Saccharomyces cerevisiae]
>gi|2132488|pir||S70136 probable membrane protein
YDR280w - yeast (Saccharomyces cerevisiae)
>gi|1230649|gb|AAB64446.1| (U51030) Ydr280wp
[Saccharomyces cerevisiae]
Length = 305
Score = 130 bits (323), Expect = 2e-29
Identities = 84/274 (30%), Positives = 140/274 (50%), Gaps = 20/274 (7%)
Query: 15 IINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDT 74
I+ L++ R+D R F+ +R +EI G K G VK+G+T+V I + +P+ D
Sbjct: 15 ILEALRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQPYEDR 71
Query: 75 PNMGVMTTNVELVPLASPTFEPGP-PDERAIELARVIDRGIRESKALNLEKMVIVPGKIV 133
P G+ + E+ P+A FE G E + +R+I++ +R S AL++E + IV G
Sbjct: 72 PFEGLFVISTEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKC 131
Query: 134 RVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLP--VEK 191
V DVH LD DG +DA IA +A L++ + P + + E V ++E EP+P +
Sbjct: 132 WAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHPVNEREPVPLGILH 191
Query: 192 IPVPVTFAKI--------------GNILVVDPSLDEELVMDGKITITTDETGHISAVQKS 237
IP+ VTF+ I ++D +L EEL+ DG +T+T ++ + V K+
Sbjct: 192 IPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTLNKNREVVQVSKA 251
Query: 238 EGGAFKLEEVMYAVETAFKKAEEIRKLILEAVEK 271
G +M A+ E+I IL+ +++
Sbjct: 252 GGLPMDALTLMKCCHEAYSIIEKITDQILQLLKE 285
>gb|AAF58076.1| (AE003808) CG8395 gene product [Drosophila melanogaster]
Length = 281
Score = 129 bits (320), Expect = 5e-29
Identities = 76/260 (29%), Positives = 133/260 (50%), Gaps = 9/260 (3%)
Query: 24 RIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMGVMTTN 83
R D R DYRP+++E G++ A GSA ++L +T +LVG+KT + P P TP G +
Sbjct: 8 RCDGRSRRDYRPMDLETGLVSNASGSARLRLANTDILVGVKTEIDVPNPLTPEFGKLEFF 67
Query: 84 VELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVL 143
V+ A+P FE + A EL + A N + ++PG+ ++ID+ +L
Sbjct: 68 VDCSANATPEFEGRGGSDLAQELILSLQNAYESPLAFNYRTLCLIPGQQCWKLYIDILIL 127
Query: 144 DHDGNLMDAIGIAAIAALLNARVPKVRYNE-ETGEVETLDETEP-----LPVEKIPVPVT 197
+ GNL DA+ +AA AAL N ++P+V + G + + P + +E +P+ VT
Sbjct: 128 ECGGNLHDAVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYDCTRIGIETVPLLVT 187
Query: 198 FAKIGNILVVDPSLDEELVMDGKITITT---DETGHISAVQKSEGGAFKLEEVMYAVETA 254
KIG+ ++VDPS +EE+ + ++ + +S + GGA + + +E
Sbjct: 188 VCKIGDYVLVDPSAEEEVCSTVSMVVSVSMRNGQAFLSGTHLTGGGAMHRDTMRNCLELG 247
Query: 255 FKKAEEIRKLILEAVEKAKQ 274
E + +L+ + + +Q
Sbjct: 248 LAIGEHLDRLLTKMLNLEQQ 267
>gi|4826922 polymyositis/scleroderma autoantigen 1 (75kD) [Homo sapiens]
>gi|86725|pir||JH0446 75K autoantigen - human
>gi|179287|gb|AAA58384.1| (M58460) autoantigen [Homo
sapiens]
Length = 355
Score = 120 bits (298), Expect = 2e-26
Identities = 68/186 (36%), Positives = 113/186 (60%), Gaps = 4/186 (2%)
Query: 89 LASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGN 148
+A+P FEPG + ++L R+++R +R SK ++ E + +V G+ V + +D+H+L+HDGN
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 149 LMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLP--VEKIPVPVTFA--KIGNI 204
++DA IAAI AL + R P V + + T +E +P+P + +P+ V+FA + G
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTY 120
Query: 205 LVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYAVETAFKKAEEIRKL 264
L+VDP+ EE VMDG + I ++ I +Q S G ++V+ + A K EI +L
Sbjct: 121 LLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIAGVKVAEITEL 180
Query: 265 ILEAVE 270
IL+A+E
Sbjct: 181 ILKALE 186
>pir||G01425 nucleolar 75K autoantigen PM-Scl - human >gi|497643|gb|AAA18832.1|
(U09215) PM-Scl-75 autoantigen [Homo sapiens]
Length = 372
Score = 120 bits (298), Expect = 2e-26
Identities = 68/186 (36%), Positives = 113/186 (60%), Gaps = 4/186 (2%)
Query: 89 LASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGN 148
+A+P FEPG + ++L R+++R +R SK ++ E + +V G+ V + +D+H+L+HDGN
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 149 LMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLP--VEKIPVPVTFA--KIGNI 204
++DA IAAI AL + R P V + + T +E +P+P + +P+ V+FA + G
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGTY 120
Query: 205 LVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYAVETAFKKAEEIRKL 264
L+VDP+ EE VMDG + I ++ I +Q S G ++V+ + A K EI +L
Sbjct: 121 LLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIAGVKVAEITEL 180
Query: 265 ILEAVE 270
IL+A+E
Sbjct: 181 ILKALE 186
>pir||T28842 hypothetical protein F37C12.13 - Caenorhabditis elegans
>gi|458978|gb|AAC48298.1| (U00033) similar to human
autoantigen (PIR:JH0446) [Caenorhabditis elegans]
Length = 617
Score = 119 bits (296), Expect = 3e-26
Identities = 69/255 (27%), Positives = 136/255 (53%), Gaps = 7/255 (2%)
Query: 21 EGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMGVM 80
E R D R E++R +++ VG G+A+ +G+T+V+ + + EP P+ GV+
Sbjct: 10 EKARFDFRSLEEFRDVKLVVGA---EVGTAICTIGNTKVMAAVSAEIAEPSSMRPHKGVI 66
Query: 81 TTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDV 140
+V+L P+A+ E + +EL R+++ IR+S+ +++E + I GK + + +DV
Sbjct: 67 NIDVDLSPMANYANEHDRLGSKGMELIRLLELIIRDSRCIDVEALCIRAGKEIWKIRVDV 126
Query: 141 HVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLP--VEKIPVPVTF 198
+LD DG+L+D +AAI AL + R P V + + E P+P + +P+ T
Sbjct: 127 RILDEDGSLLDCACLAAITALQHFRRPNVTLEPHHTLIYSEYEKAPVPLNIYHMPICTTI 186
Query: 199 AKI--GNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYAVETAFK 256
+ G I+V+DP+ E +DG I + ++ + A+ +S +++ V+ A
Sbjct: 187 GLLDKGQIVVIDPTDKETACLDGSIVVACNKRREVCALHQSTNLILSTKQIERCVKLAMA 246
Query: 257 KAEEIRKLILEAVEK 271
+AE + ++ + +++
Sbjct: 247 RAEALTAVVSDVIKQ 261
>sp|Q10205|YBX3_SCHPO HYPOTHETICAL 30.0 KD PROTEIN C17D1.03C IN CHROMOSOME II
>gi|2130222|pir||S67389 conserved hypothetical protein
SPBC17D1.03c - fission yeast (Schizosaccharomyces
pombe) >gi|7490322|pir||T39706 conserved hypothetical
protein SPBC17D1.03c - fission yeast
(Schizosaccharomyces pombe) >gi|3451295|emb|CAA20427.1|
(AL031322) putative exoribonuclease [Schizosaccharomyces
pombe]
Length = 270
Score = 111 bits (276), Expect = 7e-24
Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 5/229 (2%)
Query: 14 HIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPD 73
++ +LL + R D R ++R I I I A GSA+++ G + GIK + EPF +
Sbjct: 25 YLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEPFEN 84
Query: 74 TPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIV 133
+PN G + N+EL PL S F+PGPP + A +++ + + +++S +NL+ + I K
Sbjct: 85 SPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIFEKKAA 144
Query: 134 RVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEV---ETLDETEPLPVE 190
V++ D+ L++DG+ D A AAL ++P ++E+ V TL T P+ +
Sbjct: 145 WVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVICASTL--TRPVQLS 202
Query: 191 KIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEG 239
+++ + L+ DP+ +EE + +TI + + +I + K G
Sbjct: 203 TEVRSFSWSVFDDKLLADPTDEEEDLSTEFLTIMLNSSKNIVKIIKLGG 251
>gb|AAF48665.1| (AE003503) CG9606 gene product [Drosophila melanogaster]
Length = 466
Score = 103 bits (255), Expect = 2e-21
Identities = 72/257 (28%), Positives = 128/257 (49%), Gaps = 11/257 (4%)
Query: 19 LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMG 78
+K+ +R+D R + R +E+ G K GS V +G T+VL + +G P PN G
Sbjct: 78 VKQNQRLDGRRSNESRDVELTFG---KDWGSVAVSMGDTKVLAQVTCEMGPPALSRPNEG 134
Query: 79 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFI 138
+ NV L +A D+R+++L +++R R S++++LE + + K V + +
Sbjct: 135 KIHLNVYLGGVAFLDEAHTTHDQRSLKLNSLLERTFRSSRSIDLESLCVAVEKHVWCIRV 194
Query: 139 DVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETE----PLPVEKIPV 194
+V+VL+HDGNL DA IA +AAL++ R P V Y + GE+ + E PL PV
Sbjct: 195 NVNVLNHDGNLYDASTIATLAALMHFRRPDVWYKD--GELRIFKKKEREFIPLLFHHYPV 252
Query: 195 PVTFAKIGNIL--VVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYAVE 252
VT+ + + ++DP+L EE D I ++ + + ++ +M
Sbjct: 253 SVTYCVYKSSVQPILDPTLLEENAADSVIVLSFNSFQELCSLTAGGTAPTNARIIMQCAR 312
Query: 253 TAFKKAEEIRKLILEAV 269
A + + + + +A+
Sbjct: 313 NAAVRCKSLLNFVRKAL 329
>pir||G72623 probable ribonuclease PH APE1447 - Aeropyrum pernix (strain K1)
>gi|5105131|dbj|BAA80445.1| (AP000061) 246aa long
hypothetical ribonuclease PH [Aeropyrum pernix]
Length = 246
Score = 76.5 bits (185), Expect = 3e-13
Identities = 66/260 (25%), Positives = 118/260 (45%), Gaps = 34/260 (13%)
Query: 16 INLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGI--KTSLGEPFPD 73
+ L+++G+R D R ED RP+ ++VG++ A+GSALV+ G T+VL + + F
Sbjct: 9 VELIRDGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYV 68
Query: 74 TPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIV 133
P+ + + P ++ + P R IEL++V +RE+ LE +V+
Sbjct: 69 LPDRAALRVRYHMAPFSTDERKSPAPSRREIELSKV----VREA----LEPVVLAEEFPR 120
Query: 134 RVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLPVEKIP 193
V+ + + VL DG A AA AL +A + P+ +
Sbjct: 121 TVIDVFLEVLQADGGTRTAAVTAASLALADAGI---------------------PMRALV 159
Query: 194 VPVTFAKIGNILVVDPSLDEELVMDGKITI-TTDETGHISAVQKSEGGAFKLEEVMYAVE 252
V KI +LVVD E++ + + + + G I+ +Q + G EE A+
Sbjct: 160 GGVAVGKIQGVLVVDVDELEDMYGEADMPVAAAPDIGEITLLQLN--GVLTGEEFRTALA 217
Query: 253 TAFKKAEEIRKLILEAVEKA 272
A + + + ++ EA+ K+
Sbjct: 218 MALRAIDRVVEMEKEAIRKS 237
>pir||T21601 hypothetical protein F31D4.1 - Caenorhabditis elegans
>gi|3876516|emb|CAB07377.1| (Z92832) contains similarity
to Pfam domain: PF01138 (3 exoribonuclease family),
Score=48.6, E-value=4.5e-11, N=1~cDNA EST yk432d11.3
comes from this gene~cDNA EST yk432d11.5 comes from this
gene [Caenorhabditis elegans]
>gi|3879383|emb|CAB07412.1| (Z92838) contains similarity
to Pfam domain: PF01138 (3 exoribonuclease family),
Score=48.6, E-value=4.5e-11, N=1~cDNA EST yk432d11.3
comes from this gene~cDNA EST yk432d11.5 comes from this
gene [Caenorhabditis elegans]
Length = 305
Score = 74.5 bits (180), Expect = 1e-12
Identities = 76/260 (29%), Positives = 116/260 (44%), Gaps = 30/260 (11%)
Query: 24 RIDDRGFEDYRPIEIEVGVIEKAEGSALVKLG-STQVLVGIKTSLGEPFPDTPN--MGVM 80
R D R +D+R I +E GV+ GS V+LG +T VL GIK L +T +
Sbjct: 22 RNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKLELESYDAETEKEPKQPI 81
Query: 81 TTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKAL----NLEKMVIVPGKIVRVV 136
NV+ AS F DE A EL+ SKAL NL K + G + +
Sbjct: 82 NFNVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDIMPNLAKTQLADGYRWK-I 138
Query: 137 FIDVHVLDHDGNLMDAIGIAAIAALLNARVP----------KVRYNEETGEVETLDETEP 186
+D+ VL DG++ DAI IA I AL + P KVR + +V E
Sbjct: 139 NVDISVLQWDGSVSDAISIAIIGALSDLEFPEGDVAPDDGGKVRIVLKRPKVAGNVRDEN 198
Query: 187 LPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITI----------TTDETGHISAVQK 236
+ V P+ +T +KIG +VD + +EE + ++ + + ++ V++
Sbjct: 199 VQVAICPLLLTISKIGTANLVDCTPEEECCIRSQLLVGLAAIADSSENNEPNYDVTCVKQ 258
Query: 237 SEGGAFKLEEVMYAVETAFK 256
GG ++E + +E A K
Sbjct: 259 VGGGLLEMESIQEMLELAAK 278
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.137 0.373
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98710765
Number of Sequences: 2977
Number of extensions: 4328817
Number of successful extensions: 9905
Number of sequences better than 1.0e-10: 26
Number of HSP's better than 0.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9852
Number of HSP's gapped (non-prelim): 31
length of query: 274
length of database: 189,106,746
effective HSP length: 59
effective length of query: 215
effective length of database: 153,796,013
effective search space: 33066142795
effective search space used: 33066142795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 164 (68.3 bits)