BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0422 (PAB0422) DE:Hypothetical protein
         (209 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75181 hypothetical protein PAB0422 - Pyrococcus abyssi (st...   434  e-121
pir||C71032 hypothetical protein PH1547 - Pyrococcus horikoshii ...   275  3e-73

>pir||G75181 hypothetical protein PAB0422 - Pyrococcus abyssi (strain Orsay)
           >gi|5458044|emb|CAB49534.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 209
           
 Score =  434 bits (1103), Expect = e-121
 Identities = 209/209 (100%), Positives = 209/209 (100%)

Query: 1   MYMDHFPTLDGLIIRMGIYYFLLPAVLIVTLRAEWNYIIKKKWKRVAKGFILALLLTAPI 60
           MYMDHFPTLDGLIIRMGIYYFLLPAVLIVTLRAEWNYIIKKKWKRVAKGFILALLLTAPI
Sbjct: 1   MYMDHFPTLDGLIIRMGIYYFLLPAVLIVTLRAEWNYIIKKKWKRVAKGFILALLLTAPI 60

Query: 61  LSLVQFYLSKDYLYVHSLTKTGVCFTSSCLVEEMEKNELYKFNVTGIKAYGMPRIGLMQA 120
           LSLVQFYLSKDYLYVHSLTKTGVCFTSSCLVEEMEKNELYKFNVTGIKAYGMPRIGLMQA
Sbjct: 61  LSLVQFYLSKDYLYVHSLTKTGVCFTSSCLVEEMEKNELYKFNVTGIKAYGMPRIGLMQA 120

Query: 121 FRLLDSRYNRDKFKFERVNSVVIVRTFFPLPITEVWDYKVDSQDPHRIIGFRKFYIVYPK 180
           FRLLDSRYNRDKFKFERVNSVVIVRTFFPLPITEVWDYKVDSQDPHRIIGFRKFYIVYPK
Sbjct: 121 FRLLDSRYNRDKFKFERVNSVVIVRTFFPLPITEVWDYKVDSQDPHRIIGFRKFYIVYPK 180

Query: 181 TVGSALTEAYDFEFKMFSWAGGGGGGGFA 209
           TVGSALTEAYDFEFKMFSWAGGGGGGGFA
Sbjct: 181 TVGSALTEAYDFEFKMFSWAGGGGGGGFA 209


>pir||C71032 hypothetical protein PH1547 - Pyrococcus horikoshii
           >gi|3257976|dbj|BAA30659.1| (AP000006) 206aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 206
           
 Score =  275 bits (696), Expect = 3e-73
 Identities = 117/204 (57%), Positives = 161/204 (78%)

Query: 1   MYMDHFPTLDGLIIRMGIYYFLLPAVLIVTLRAEWNYIIKKKWKRVAKGFILALLLTAPI 60
           MYMDHFPT  G I  M  YY L+P  L++ LRA+W+YI++  W+ VA+GFI+A+L+  P+
Sbjct: 1   MYMDHFPTFGGYIFSMATYYSLIPLTLLIALRAKWDYIMRHYWRSVARGFIIAILIALPV 60

Query: 61  LSLVQFYLSKDYLYVHSLTKTGVCFTSSCLVEEMEKNELYKFNVTGIKAYGMPRIGLMQA 120
            S++QF L+ DYLYV+SLTKTGVC TSSCL+  M++NE YKFNVTG++ YG+P +G+MQA
Sbjct: 61  TSILQFKLTGDYLYVYSLTKTGVCITSSCLISRMKENEYYKFNVTGLQKYGIPNLGIMQA 120

Query: 121 FRLLDSRYNRDKFKFERVNSVVIVRTFFPLPITEVWDYKVDSQDPHRIIGFRKFYIVYPK 180
           +RL+D ++N+ K++++ VN+VVI+R+ FPLPITEVW Y+VD ++ H+IIG RKFY+ YP 
Sbjct: 121 YRLVDKKFNKLKWRYDVVNAVVIIRSLFPLPITEVWSYEVDPKESHKIIGLRKFYVYYPY 180

Query: 181 TVGSALTEAYDFEFKMFSWAGGGG 204
             G+ L+ AYDFEF MF W  GGG
Sbjct: 181 NPGTLLSRAYDFEFTMFLWGSGGG 204


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.328    0.145    0.452 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81221668
Number of Sequences: 2977
Number of extensions: 3272589
Number of successful extensions: 16760
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16758
Number of HSP's gapped (non-prelim): 2
length of query: 209
length of database: 189,106,746
effective HSP length: 48
effective length of query: 161
effective length of database: 160,379,370
effective search space: 25821078570
effective search space used: 25821078570
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 163 (67.9 bits)