BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0423 (rpoB) DE:DNA-directed RNA polymerase, subunit B (rpoB)
(EC 2.7.7.6)
(1117 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75182 DNA-directed RNA polymerase (EC 2.7.7.6) chain B PAB... 2267 0.0
pir||A71032 probable DNA-directed RNA polymerase subunit B - Pyr... 2236 0.0
sp|P31814|RPOB_THECE DNA-DIRECTED RNA POLYMERASE SUBUNIT B >gi|2... 2015 0.0
sp|P11513|RPOB_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT B >gi|8... 1242 0.0
sp|Q03587|RPOB_THEAC DNA-DIRECTED RNA POLYMERASE SUBUNIT B >gi|2... 1207 0.0
pir||G72571 probable DNA-directed RNA polymerase subunit B APE18... 1080 0.0
sp|Q42877|RPB2_LYCES DNA-DIRECTED RNA POLYMERASE II 135 KDA POLY... 881 0.0
pir||T05846 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 872 0.0
pir||S30229 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 866 0.0
sp|P38420|RPB2_ARATH DNA-DIRECTED RNA POLYMERASE II 135 KDA POLY... 864 0.0
gb|AAF55024.1| (AE003703) RpII140 gene product [Drosophila melan... 856 0.0
pir||A27826 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 852 0.0
gi|4505941 polymerase (RNA) II (DNA directed) polypeptide B (140... 852 0.0
sp|Q10578|RPB2_CAEEL DNA-DIRECTED RNA POLYMERASE II SECOND LARGE... 845 0.0
sp|Q02061|RPB2_SCHPO DNA-DIRECTED RNA POLYMERASE II 138 KD POLYP... 845 0.0
gb|AAF19059.1|AF107787_1 (AF107787) DNA-dependent RNA polymerase... 834 0.0
gi|6324725 second largest subunit of RNA polymerase II; Rpb2p [S... 825 0.0
sp|P08266|RPB2_DROME DNA-DIRECTED RNA POLYMERASE II 140 KD POLYP... 821 0.0
emb|CAA29180.2| (X05709) RNA polymerase [Drosophila melanogaster] 820 0.0
gb|AAA68096.1| (M15693) RNA polymerase II 48 kd subunit [Sacchar... 820 0.0
gi|11499471 DNA-directed RNA polymerase, subunit B' (rpoB1) [Arc... 820 0.0
sp|Q60181|RPB1_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT B' >gi|... 797 0.0
pir||S70415 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 783 0.0
sp|O27124|RPB1_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT B' >gi|... 781 0.0
sp|P09845|RPB1_METTW DNA-DIRECTED RNA POLYMERASE SUBUNIT B' >gi|... 777 0.0
sp|Q10233|RPC2_SCHPO PUTATIVE DNA-DIRECTED RNA POLYMERASE III 13... 771 0.0
sp|P15351|RPB1_HALHA DNA-DIRECTED RNA POLYMERASE SUBUNIT B' >gi|... 762 0.0
gb|AAB59324.1| (M38723) RNA polymerase III [Saccharomyces cerevi... 760 0.0
gi|6324781 second-largest subunit of RNA polymerase III; Ret1p [... 760 0.0
sp|P41557|RPB1_METVA DNA-DIRECTED RNA POLYMERASE SUBUNIT B' >gi|... 756 0.0
pir||T16011 hypothetical protein F09F7.3 - Caenorhabditis elegan... 745 0.0
pir||T49421 probable DNA-directed RNA polymerase III second-larg... 735 0.0
gb|AAF58590.1| (AE003823) RpIII128 gene product [Drosophila mela... 732 0.0
gb|AAK40567.1| DNA-directed RNA polymerase, subunit B' (rpoB1) [... 728 0.0
sp|P25167|RPC2_DROME DNA-DIRECTED RNA POLYMERASE III 128 KD POLY... 717 0.0
dbj|BAB11387.1| (AB012240) DNA-directed RNA polymerase subunit [... 707 0.0
gb|AAF19067.1|AF107795_1 (AF107795) DNA-dependent RNA polymerase... 698 0.0
gb|AAF19065.1|AF107793_1 (AF107793) DNA-dependent RNA polymerase... 695 0.0
gb|AAF19069.1|AF107797_1 (AF107797) DNA-dependent RNA polymerase... 682 0.0
emb|CAB95348.1| (AL359782) possible putative DNA-directed RNA po... 666 0.0
gb|AAF19071.1|AF107799_1 (AF107799) DNA-dependent RNA polymerase... 650 0.0
gb|AAF19058.1|AF107786_1 (AF107786) DNA-dependent RNA polymerase... 647 0.0
gb|AAF19072.1|AF107800_1 (AF107800) DNA-dependent RNA polymerase... 646 0.0
gb|AAF19057.1|AF107785_1 (AF107785) DNA-dependent RNA polymerase... 645 0.0
gb|AAF19074.1|AF107802_1 (AF107802) DNA-dependent RNA polymerase... 645 0.0
gb|AAF19078.1|AF107806_1 (AF107806) DNA-dependent RNA polymerase... 642 0.0
gb|AAF19079.1|AF107807_1 (AF107807) DNA-dependent RNA polymerase... 640 0.0
gb|AAF19081.1|AF107809_1 (AF107809) DNA-dependent RNA polymerase... 637 0.0
gb|AAF19073.1|AF107801_1 (AF107801) DNA-dependent RNA polymerase... 635 0.0
gb|AAF19082.1|AF107810_1 (AF107810) DNA-dependent RNA polymerase... 633 e-180
gb|AAF19075.1|AF107803_1 (AF107803) DNA-dependent RNA polymerase... 633 e-180
gb|AAF19064.1|AF107792_1 (AF107792) DNA-dependent RNA polymerase... 631 e-179
gb|AAF19077.1|AF107805_1 (AF107805) DNA-dependent RNA polymerase... 628 e-178
gb|AAF19076.1|AF107804_1 (AF107804) DNA-dependent RNA polymerase... 626 e-178
gb|AAF19080.1|AF107808_1 (AF107808) DNA-dependent RNA polymerase... 626 e-178
gb|AAF19062.1|AF107790_1 (AF107790) DNA-dependent RNA polymerase... 626 e-178
gb|AAF19068.1|AF107796_1 (AF107796) DNA-dependent RNA polymerase... 620 e-176
gb|AAF19070.1|AF107798_1 (AF107798) DNA-dependent RNA polymerase... 619 e-176
gb|AAF19063.1|AF107791_1 (AF107791) DNA-dependent RNA polymerase... 619 e-176
pir||T43701 DNA-directed RNA polymerase (EC 2.7.7.6) II largest ... 600 e-170
gb|AAC83398.1| (U10332) RNA polymerase II, second largest subuni... 600 e-170
gb|AAA50226.1| (U10335) RNA polymerase II, second largest subuni... 599 e-170
gb|AAA50228.1| (U10337) RNA polymerase II, second largest subuni... 596 e-169
gb|AAF19066.1|AF107794_1 (AF107794) DNA-dependent RNA polymerase... 576 e-163
gb|AAF19061.1|AF107789_1 (AF107789) DNA-dependent RNA polymerase... 573 e-162
gb|AAF19060.1|AF107788_1 (AF107788) DNA-dependent RNA polymerase... 557 e-157
sp|Q58444|RPB2_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT B" >gi|... 541 e-152
gb|AAK40568.1| DNA-directed RNA polymerase, subunit B'' (rpoB2) ... 540 e-152
sp|P41558|RPB2_METVA DNA-DIRECTED RNA POLYMERASE SUBUNIT B" >gi|... 536 e-151
gi|11499470 DNA-directed RNA polymerase, subunit B'' (rpoB2) [Ar... 528 e-148
pir||B71608 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 526 e-148
sp|P15352|RPB2_HALHA DNA-DIRECTED RNA POLYMERASE SUBUNIT B" >gi|... 508 e-142
dbj|BAB01854.1| (AP000377) DNA-directed RNA polymerase, subunit ... 490 e-137
dbj|BAB02021.1| (AB020749) DNA-dependent RNA polymerase II [Arab... 480 e-134
pir||T50175 dna-directed rna polymerase ii 138 kd polypeptide [i... 469 e-130
pir||T43832 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 467 e-130
gb|AAC08961.1| (AF043427) RNA polymerase II second largest subun... 462 e-128
gb|AAC08960.1| (AF043426) RNA polymerase II second largest subun... 461 e-128
pir||T43842 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 457 e-127
pir||T43847 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 456 e-127
pir||T43837 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 455 e-126
gb|AAC09367.1| (AF055028) RNA polymerase II 140 kDa subunit [Hom... 453 e-126
sp|O27123|RPB2_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT B" >gi|... 449 e-125
pir||T43844 DNA-directed RNA polymerase (EC 2.7.7.6) II second l... 448 e-124
sp|P09844|RPB2_METTW DNA-DIRECTED RNA POLYMERASE SUBUNIT B" >gi|... 447 e-124
gb|AAB94062.1| (AF020842) RPB140 [Aristolochia gigantea] 447 e-124
sp|O54888|RPA2_RAT DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPT... 441 e-122
gi|6677789 RNA polymerase 1-2 (128 kDa subunit) [Mus musculus] >... 434 e-120
dbj|BAB14082.1| (AK022533) unnamed protein product [Homo sapiens] 427 e-118
sp|P28365|RPA2_EUPOC DNA-DIRECTED RNA POLYMERASE I SECOND LARGES... 426 e-118
pir||T20870 hypothetical protein F14B4.3 - Caenorhabditis elegan... 423 e-117
gb|AAC08937.1| (AF041852) RPB140 [Chloranthus spicatus] 422 e-116
pir||T50394 DNA-directed RNA polymerase subunit [imported] - fis... 414 e-114
sp|P20028|RPA2_DROME DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPE... 411 e-113
gb|AAF51503.1| (AE003589) RpI135 gene product [Drosophila melano... 408 e-112
gi|6325267 RNA polymerase I subunit A135; Rpa135p [Saccharomyces... 392 e-107
emb|CAB86470.1| (AL163481) dna-directed rna polymerase ii 138 kd... 392 e-107
gi|9628161 RNA polymerase subunit 2 [African swine fever virus] ... 386 e-106
dbj|BAB14296.1| (AK022890) unnamed protein product [Homo sapiens] 378 e-103
pir||T30515 DNA-directed RNA polymerase (EC 2.7.7.6) I 135K chai... 370 e-101
gb|AAG12856.1|AC022455_3 (AC022455) DNA-directed RNA polymerase ... 360 5e-98
gb|AAG10602.1|AC008030_2 (AC008030) Similar to DNA-directed RNA ... 357 3e-97
gb|AAF75766.1|AF265351_1 (AF265351) DNA-directed RNA polymerase ... 349 8e-95
gi|11435960 polymerase (RNA) II (DNA directed) polypeptide B (14... 334 4e-90
dbj|BAB15175.1| (AK025574) unnamed protein product [Homo sapiens] 309 2e-82
emb|CAB65465.2| (Y19223) RNA polymerase, beta subunit [Thermus a... 305 2e-81
pdb|1DDQ|C Chain C, Crystal Structure Of Thermus Aquaticus Core ... 305 2e-81
gi|8922399 hypothetical protein FLJ10388 [Homo sapiens] >gi|7022... 301 3e-80
dbj|BAA91527.1| (AK001161) unnamed protein product [Homo sapiens] 300 8e-80
emb|CAB43061.1| (AJ133214) RNA polymerase II [Buddleja asiatica] 294 3e-78
emb|CAB43082.1| (AJ133215) RNA polymerase II [Retzia capensis] 290 5e-77
emb|CAB43079.1| (AJ133217) RNA polymerase II [Peltanthera florib... 290 7e-77
emb|CAB43088.1| (AJ133233) RNA polymerase II [Usteria guineensis] 288 2e-76
gb|AAC64011.1| (AF064610) RNA polymerase II subunit 2 [Mostuea b... 288 3e-76
gb|AAC64012.1| (AF064611) RNA polymerase II subunit 2 [Periploca... 287 4e-76
emb|CAB43085.1| (AJ133219) RNA polymerase II [Stephanotis florib... 287 6e-76
emb|CAB43073.1| (AJ133236) RNA polymerase II [Mussaenda erythrop... 287 6e-76
emb|CAB43080.1| (AJ133239) RNA polymerase II [Pinckneya pubescens] 287 6e-76
emb|CAB43064.1| (AJ133234) RNA polymerase II [Chiococca racemosa] 286 7e-76
emb|CAB43083.1| (AJ133240) RNA polymerase II [Rondeletia odorata] 286 7e-76
emb|CAB43059.1| (AJ133225) RNA polymerase II [Antonia ovata] 286 1e-75
emb|CAB43072.1| (AJ133227) RNA polymerase II [Logania vaginalis] 286 1e-75
emb|CAB43074.1| (AJ133229) RNA polymerase II [Mitreola petiolata] 286 1e-75
gb|AAC64010.1| (AF064609) RNA polymerase II subunit 2 [Kopsia fr... 285 2e-75
emb|CAB43068.1| (AJ133235) RNA polymerase II [Gardenia thunbergia] 285 2e-75
emb|CAB43084.1| (AJ133232) RNA polymerase II [Spigelia anthelmia] 285 2e-75
gb|AAC64013.1| (AF064612) RNA polymerase II subunit 2 [Chironia ... 285 2e-75
emb|CAB43087.1| (AJ133216) RNA polymerase II [Sanango racemosum] 285 2e-75
emb|CAB43086.1| (AJ133231) RNA polymerase II [Strychnos potatorum] 285 2e-75
emb|CAB43077.1| (AJ133237) RNA polymerase II [Oldenlandia corymb... 284 3e-75
emb|CAB43066.1| (AJ133226) RNA polymerase II [Gardneria angustif... 284 5e-75
gi|11436210 hypothetical protein FLJ10388 [Homo sapiens] 283 6e-75
emb|CAB43060.1| (AJ133218) RNA polymerase II [Alstonia scholaris] 283 6e-75
gb|AAC64014.1| (AF064613) RNA polymerase II subunit 2 [Kopsia fr... 283 8e-75
emb|CAB43078.1| (AJ133238) RNA polymerase II [Ophiorrhiza mungos] 283 8e-75
emb|CAB43058.1| (AJ133222) RNA polymerase II [Anthocleista grand... 281 2e-74
gb|AAA21416.1| (L27989) RNA polymerase beta-subunit [Mycobacteri... 280 6e-74
emb|CAB43089.1| (AJ133220) RNA polymerase II [Wrightia arborea] 279 1e-73
emb|CAB43065.1| (AJ133223) RNA polymerase II [Fagraea sp.] 278 2e-73
emb|CAB43067.1| (AJ133221) RNA polymerase II [Gelsemium sempervi... 277 4e-73
emb|CAB43076.1| (AJ133230) RNA polymerase II [Neuburgia corynoca... 277 5e-73
gb|AAC64015.1| (AF064614) RNA polymerase II subunit 2 [Mostuea b... 276 8e-73
emb|CAB43081.1| (AJ133224) RNA polymerase II [Potalia resinifera] 276 1e-72
gb|AAA20242.2| (U12205) RNA-polymerase beta subunit [Mycobacteri... 274 3e-72
gb|AAA72652.1| (M20391) RNA polymerase subunits B'' [Methanobact... 273 6e-72
sp|O83269|RPOB_TREPA DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 265 3e-69
emb|CAB43075.1| (AJ133228) RNA polymerase II [Mitrasacme pilosa] 262 1e-68
gb|AAF60349.1|AF242549_1 (AF242549) DNA-dependent RNA polymerase... 262 2e-68
gb|AAA91426.2| (U24494) DNA polymerase [Mycobacterium smegmatis] 246 1e-63
dbj|BAA88887.1| (AB018404) similar to vaccinia A24R [Yaba monkey... 245 2e-63
emb|CAC10529.1| (Y16466) DNA-dependent RNA polymerase subunit be... 244 3e-63
pir||T37411 RNA polymerase subunit rpo132 - vaccinia virus (stra... 241 4e-62
sp|P17474|RPO2_COWPX DNA-DIRECTED RNA POLYMERASE 132 KDA POLYPEP... 240 7e-62
gb|AAA42920.1| (M26173) rpo132 RNA polymerase (early and late) [... 240 7e-62
gi|9627649 A24R [Variola virus] >gi|464676|sp|P33811|RPO2_VARV D... 240 7e-62
pir||T28566 DNA-directed RNA polymerase (EC 2.7.7.6) 133K chain ... 240 7e-62
gi|9791084 A24R; putative [Vaccinia virus] >gi|133383|sp|P19798|... 240 9e-62
gi|9634529 TA25R [Vaccinia virus (strain Tian Tan)] >gi|6969808|... 239 2e-61
gi|9633323 A25R protein [variola minor virus] >gi|7514172|pir||F... 238 3e-61
sp|P16716|RPO2_CAPVK DNA-DIRECTED RNA POLYMERASE 132 KD POLYPEPT... 233 1e-59
gi|9633750 m114R [Myxoma virus] >gi|6523969|gb|AAF15002.1|AF1707... 231 3e-59
gi|9629061 MC129R [Molluscum contagiosum virus subtype 1] >gi|74... 228 3e-58
gi|9634859 ORF FPV189 RNA polymerase subunit, RPO132 [Fowlpox vi... 227 5e-58
gi|9633924 gp114R [Rabbit fibroma virus] >gi|6578643|gb|AAF17997... 226 9e-58
sp|P47768|RPOB_STAAU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 221 4e-56
pir||T44375 rpoB protein [imported] - Bacillus halodurans >gi|45... 219 1e-55
emb|CAB56706.1| (Y16468) DNA-dependent RNA polymerase subunit be... 213 6e-54
emb|CAC10557.1| (Y16469) DNA-dependent RNA polymerase subunit be... 212 2e-53
gi|11428554 similar to DNA-directed RNA polymerase I (135 kDa) [... 210 7e-53
pir||G75459 DNA-directed RNA polymerase, beta subunit - Deinococ... 206 1e-51
gi|11467690 RNA polymerase b-chain [Guillardia theta] >gi|609412... 204 5e-51
gi|11467373 beta subunit of RNA polymerase [Cyanophora paradoxa]... 201 5e-50
gi|11466679 rpoB [Marchantia polymorpha] >gi|133415|sp|P06272|RP... 196 1e-48
sp|P77965|RPOB_SYNY3 DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 196 1e-48
gi|11466382 beta subunit of RNA polymerase [Mesostigma viride] >... 196 2e-48
pir||F70535 probable rpoB protein - Mycobacterium tuberculosis (... 190 7e-47
sp|P47766|RPOB_MYCTU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 190 7e-47
sp|P29398|RPOB_THEMA DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 187 5e-46
emb|CAC10527.1| (Y16472) DNA-dependent RNA polymerase subunit be... 187 6e-46
gi|11465577 unknown; DNA-directed RNA polymerase beta chain [Cya... 186 1e-45
sp|P30760|RPOB_MYCLE DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 182 2e-44
gi|11465718 DNA-directed RNA polymerase beta chain [Porphyra pur... 181 3e-44
emb|CAB77428.1| (AL160431) DNA-directed RNA polymerase beta chai... 181 4e-44
gi|11467566 RNA polymerase beta-chain [Odontella sinensis] >gi|1... 180 6e-44
sp|P36440|RPOB_HETCA DNA-DIRECTED RNA POLYMERASE BETA CHAIN >gi|... 180 1e-43
gi|11467044 RNA polymerase subunit [Euglena gracilis] >gi|133397... 170 9e-41
sp|Q9Z9A0|RPOB_CHLPN DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 170 9e-41
pir||F81548 DNA-directed RNA polymerase, beta chain CP0694 [impo... 170 9e-41
dbj|BAA98291.1| (AP002545) RNA polymerase beta [Chlamydophila pn... 170 9e-41
sp|O84317|RPOB_CHLTR DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 168 3e-40
sp|P56869|RPOB_CHLMU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 168 3e-40
gi|9631469 ORF MSV155 putative RNA polymerase second largest sub... 150 8e-35
gb|AAA82612.1| (U33419) RNA polymerase subunit [orf virus] 150 1e-34
pir||A81236 DNA-directed RNA polymerase, beta chain NMB0132 [imp... 148 4e-34
sp|P57009|RPOB_NEIMA DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 148 4e-34
sp|Q59622|RPOB_NEIMB DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 148 4e-34
sp|O87903|RPOB_COXBU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 148 4e-34
sp|O67762|RPOB_AQUAE DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 146 1e-33
gb|AAB57999.1| (U86941) similar to variola A25R and vaccinia A24... 145 4e-33
gb|AAC69338.1| (AF087812) RNA polymerase B-subunit [Legionella p... 144 5e-33
emb|CAA52957.1| (X75046) DNA dependent RNA polymerase [Aquifex p... 144 5e-33
pir||E82533 RNA polymerase beta subunit XF2633 [imported] - Xyle... 142 2e-32
sp|P19175|RPOB_PSEPU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 137 6e-31
prf||1606216A RNA polymerase beta [Pseudomonas putida] 136 2e-30
gb|AAF22437.1|AF076436_1 (AF076436) RNA polymerase beta subunit;... 135 3e-30
gb|AAF22431.1| (AF076433) RNA polymerase beta subunit; RpoB [Ric... 135 3e-30
sp|O52271|RPOB_RICPR DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRA... 135 3e-30
gb|AAF22439.1|AF076437_1 (AF076437) RNA polymerase beta subunit;... 135 3e-30
gb|AAF22433.1|AF076434_1 (AF076434) RNA polymerase beta subunit;... 135 3e-30
gb|AAF22435.1| (AF076435) RNA polymerase beta subunit; RpoB [Ric... 135 3e-30
pir||JN0419 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain ... 134 4e-30
pir||H83112 DNA-directed RNA polymerase beta chain PA4270 [impor... 134 4e-30
pir||B71846 dna-directed RNA polymerase, beta chain - Helicobact... 127 9e-28
pir||F64669 DNA-directed RNA polymerase, beta subunit - Helicoba... 124 4e-27
emb|CAA63892.1| (X94182) RNA polymerase beta subunit [Myxoma virus] 105 3e-21
pir||S33885 DNA-directed RNA polymerase (EC 2.7.7.6) I second la... 105 3e-21
gb|AAC47680.1| (U89650) RNA polymerase II second largest subunit... 103 1e-20
gb|AAC47431.1| (U46561) RNA polymerase II subunit 2 [Tetrahymena... 98 4e-19
>pir||A75182 DNA-directed RNA polymerase (EC 2.7.7.6) chain B PAB0423 - Pyrococcus
abyssi (strain Orsay) >gi|5458046|emb|CAB49536.1|
(AJ248284) DNA-directed RNA polymerase, subunit B (rpoB
(EC 2.7.7.6) [Pyrococcus abyssi]
Length = 1117
Score = 2267 bits (5810), Expect = 0.0
Identities = 1117/1117 (100%), Positives = 1117/1117 (100%)
Query: 1 MRGPTVVEVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDF 60
MRGPTVVEVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDF
Sbjct: 1 MRGPTVVEVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDF 60
Query: 61 EVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRI 120
EVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRI
Sbjct: 61 EVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRI 120
Query: 121 GELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK 180
GELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK
Sbjct: 121 GELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK 180
Query: 181 DERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDI 240
DERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDI
Sbjct: 181 DERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDI 240
Query: 241 VDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLL 300
VDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLL
Sbjct: 241 VDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLL 300
Query: 301 PHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAF 360
PHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAF
Sbjct: 301 PHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAF 360
Query: 361 SQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGV 420
SQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGV
Sbjct: 361 SQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGV 420
Query: 421 SQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNL 480
SQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNL
Sbjct: 421 SQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNL 480
Query: 481 ALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIK 540
ALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIK
Sbjct: 481 ALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIK 540
Query: 541 KDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLK 600
KDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLK
Sbjct: 541 KDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLK 600
Query: 601 WSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAA 660
WSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAA
Sbjct: 601 WSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAA 660
Query: 661 PRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFV 720
PRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFV
Sbjct: 661 PRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFV 720
Query: 721 VAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGY 780
VAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGY
Sbjct: 721 VAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGY 780
Query: 781 RGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPS 840
RGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPS
Sbjct: 781 RGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPS 840
Query: 841 ERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTES 900
ERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTES
Sbjct: 841 ERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTES 900
Query: 901 GIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGF 960
GIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGF
Sbjct: 901 GIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGF 960
Query: 961 KHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAR 1020
KHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAR
Sbjct: 961 KHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAR 1020
Query: 1021 EGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVC 1080
EGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVC
Sbjct: 1021 EGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVC 1080
Query: 1081 GEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTERV 1117
GEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTERV
Sbjct: 1081 GEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTERV 1117
>pir||A71032 probable DNA-directed RNA polymerase subunit B - Pyrococcus
horikoshii >gi|3257974|dbj|BAA30657.1| (AP000006) 1117aa
long hypothetical DNA-directed RNA polymerase subunit B
[Pyrococcus horikoshii]
Length = 1117
Score = 2236 bits (5730), Expect = 0.0
Identities = 1092/1117 (97%), Positives = 1113/1117 (98%)
Query: 1 MRGPTVVEVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDF 60
MRGPTVVEVTPDDLWIVMESYW+EKGLVRQHLDSYNAFI+RGLQEVVDEFGGIKPDIPDF
Sbjct: 1 MRGPTVVEVTPDDLWIVMESYWEEKGLVRQHLDSYNAFIERGLQEVVDEFGGIKPDIPDF 60
Query: 61 EVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRI 120
EVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQ+PVEVRI
Sbjct: 61 EVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQDPVEVRI 120
Query: 121 GELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK 180
GELPIMLKSK CRLYGLSD+EL +LGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK
Sbjct: 121 GELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK 180
Query: 181 DERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDI 240
DERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVP+PVKFVYVMRALGLERDKDI
Sbjct: 181 DERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPRPVKFVYVMRALGLERDKDI 240
Query: 241 VDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLL 300
VDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLL
Sbjct: 241 VDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLL 300
Query: 301 PHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAF 360
PH+GV+PEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAF
Sbjct: 301 PHMGVTPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAF 360
Query: 361 SQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGV 420
SQL+KDIQYQMTKTYQRRGEKYVF NIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGV
Sbjct: 361 SQLIKDIQYQMTKTYQRRGEKYVFSNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGV 420
Query: 421 SQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNL 480
SQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNL
Sbjct: 421 SQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNL 480
Query: 481 ALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIK 540
ALMAQITTAVPEEEV+EYLMSLGIVPIEVRRPSPELWRVYLNGV+IGT+EDGKALVERIK
Sbjct: 481 ALMAQITTAVPEEEVREYLMSLGIVPIEVRRPSPELWRVYLNGVLIGTVEDGKALVERIK 540
Query: 541 KDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLK 600
KDRRSGKISDIINVAYYEDV+EVYVNSDDGRVRRPLIIVENG PKLTKEHVQAIKEGRLK
Sbjct: 541 KDRRSGKISDIINVAYYEDVKEVYVNSDDGRVRRPLIIVENGVPKLTKEHVQAIKEGRLK 600
Query: 601 WSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAA 660
WSDLVRMGVIEYLDAEEEENAYVAMWPWEVT+EHTHLELMPAAILGLPASLIPYPEHNAA
Sbjct: 601 WSDLVRMGVIEYLDAEEEENAYVAMWPWEVTKEHTHLELMPAAILGLPASLIPYPEHNAA 660
Query: 661 PRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFV 720
PRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFV
Sbjct: 661 PRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFV 720
Query: 721 VAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGY 780
VAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTD+FEIP+PTVRGY
Sbjct: 721 VAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDRFEIPAPTVRGY 780
Query: 781 RGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPS 840
RGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPS
Sbjct: 781 RGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPS 840
Query: 841 ERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTES 900
E+G+VDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTES
Sbjct: 841 EKGIVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTES 900
Query: 901 GIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGF 960
GIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGF
Sbjct: 901 GIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGF 960
Query: 961 KHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAR 1020
KHTGREIMYDGITGKRFEADIF+G+IYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAR
Sbjct: 961 KHTGREIMYDGITGKRFEADIFIGIIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAR 1020
Query: 1021 EGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVC 1080
EGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIA+EDKRRHKVYCPVC
Sbjct: 1021 EGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAIEDKRRHKVYCPVC 1080
Query: 1081 GEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTERV 1117
GEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTERV
Sbjct: 1081 GEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTERV 1117
>sp|P31814|RPOB_THECE DNA-DIRECTED RNA POLYMERASE SUBUNIT B >gi|280354|pir||S25563
DNA-directed RNA polymerase (EC 2.7.7.6) chain B -
Thermococcus celer >gi|48140|emb|CAA47722.1| (X67313)
Subunit B of DNA-dependent RNA polymerase [Thermococcus
celer]
Length = 1122
Score = 2015 bits (5162), Expect = 0.0
Identities = 959/1119 (85%), Positives = 1052/1119 (93%), Gaps = 3/1119 (0%)
Query: 2 RGPTVVEVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFE 61
RGPTVV+VTPDDLW+VME+YW+EKGLVRQHLDSYNAFID G+QEV+DEFGG+KPDIPDFE
Sbjct: 4 RGPTVVDVTPDDLWLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGVKPDIPDFE 63
Query: 62 VKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIG 121
VKFGK+R+GEPEFQE GQRKPLYPMDARIRNLTYSAP+YLE+IPV+ G+ QE VEVRIG
Sbjct: 64 VKFGKVRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVVNGVSQEAVEVRIG 123
Query: 122 ELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKD 181
ELPIMLKSK CRLYGLSD+EL +LGEDPKDPGGYFI+NGSERVIVSIED+APN+TLVE+D
Sbjct: 124 ELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIVNGSERVIVSIEDLAPNKTLVERD 183
Query: 182 ERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIV 241
ERQ + IAK FSYRHGYRAL+TVER+KDGILYV +PNVP+PVKFVYVMRALGL D++IV
Sbjct: 184 ERQNRIIAKCFSYRHGYRALITVERRKDGILYVKLPNVPRPVKFVYVMRALGLLSDREIV 243
Query: 242 DAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLLP 301
+AV +DP +Q +LFDNLEDASD+TTQ+EAL+YIGKL PGQ +EYRL+RA+ +IDNNLLP
Sbjct: 244 EAVSDDPRIQHVLFDNLEDASDVTTQEEALDYIGKLSLPGQPKEYRLRRAQNIIDNNLLP 303
Query: 302 HIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFS 361
H+GV +DR KAYYLGMMAL+V+ELSLG R EDDKDHYANKRL+LAGDLL DLFRVAF
Sbjct: 304 HMGVEEKDRKAKAYYLGMMALRVLELSLGLRGEDDKDHYANKRLKLAGDLLMDLFRVAFG 363
Query: 362 QLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVS 421
QLVKD+QYQMTKTYQR+GE+Y F NI RF+RNSIRPDVL+ERIEHALATG+WPGGRTGVS
Sbjct: 364 QLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGSWPGGRTGVS 423
Query: 422 QLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLA 481
QLLDRTNY+STLSHLRRVTSPL REQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLA
Sbjct: 424 QLLDRTNYISTLSHLRRVTSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLA 483
Query: 482 LMAQITTAVPEEEVKEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKK 541
LM+QITT VPEEEV+EYL LG+VPIE RRP+P+LWR+YLNGV++GT+EDG+ V RI+
Sbjct: 484 LMSQITTGVPEEEVREYLERLGVVPIEERRPNPDLWRLYLNGVLVGTVEDGEGFVNRIRT 543
Query: 542 DRRSGKISDIINVAYY--EDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRL 599
DRRSGKISDIINVA Y EDV+E+YVNSDDGRVRRPLIIVENG+PKLT+EHV+AIK G L
Sbjct: 544 DRRSGKISDIINVALYQDEDVKEIYVNSDDGRVRRPLIIVENGRPKLTREHVEAIKNGSL 603
Query: 600 KWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNA 659
WSDLV+MGVIEYLDAEEEENA VA WPWEVTEEHTHLELMPAAILG+PASL+PYPEHNA
Sbjct: 604 TWSDLVKMGVIEYLDAEEEENALVATWPWEVTEEHTHLELMPAAILGIPASLVPYPEHNA 663
Query: 660 APRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNF 719
PRNTYGAGMAKQSLGLGWANFRIRVDTRGHL+HYPQ+PLVNSRIMKAVG+E+RPAGQNF
Sbjct: 664 RPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAGQNF 723
Query: 720 VVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRG 779
VVAVL+Y GYNMEDAII+NKASIERGLARSTFFRTYEAEEK+YLGGQTD+FEIP PT++G
Sbjct: 724 VVAVLSYAGYNMEDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRFEIPDPTIQG 783
Query: 780 YRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEER-GLGAVSLQERRETSVAVR 838
Y GE+YYRHLDEDG+IFPESKV GKDVL+GRTSPPRFLEE+ GLG + LQERRETS+ VR
Sbjct: 784 YLGERYYRHLDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQSGLGGIILQERRETSLTVR 843
Query: 839 PSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWT 898
PSE GVVDKVIITETGDGTKLVKVT RDLRIPE GDKFASRHGQKGVIGLIVPQEDMPWT
Sbjct: 844 PSETGVVDKVIITETGDGTKLVKVTTRDLRIPEFGDKFASRHGQKGVIGLIVPQEDMPWT 903
Query: 899 ESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEEL 958
ESGIVPDLIVNPHGIPSRMTVGQL+EAIGGKVA+LKGRRVDGTAFIGEPEEKLRKELEEL
Sbjct: 904 ESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEEKLRKELEEL 963
Query: 959 GFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGR 1018
GFKH+GRE+MYDGITG+R EAD+FVGVIYYQRLHHMVADK+HARSRGPVQVLTKQPTEGR
Sbjct: 964 GFKHSGREVMYDGITGRRLEADVFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEGR 1023
Query: 1019 AREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCP 1078
AREGGLRFGEMERDVL+GHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRR KVYCP
Sbjct: 1024 AREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRGKVYCP 1083
Query: 1079 VCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTERV 1117
VCGEEERISKVEMSYAFKLLLDELKAM IRP L L +RV
Sbjct: 1084 VCGEEERISKVEMSYAFKLLLDELKAMGIRPSLKLVDRV 1122
>sp|P11513|RPOB_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT B >gi|81108|pir||S04716
DNA-directed RNA polymerase (EC 2.7.7.6) chain B
[validated] - Sulfolobus acidocaldarius
>gi|46669|emb|CAA32924.1| (X14818) RNA polymerase subunit
B (AA 1-1126) [Sulfolobus acidocaldarius]
Length = 1126
Score = 1242 bits (3178), Expect = 0.0
Identities = 617/1121 (55%), Positives = 822/1121 (73%), Gaps = 28/1121 (2%)
Query: 15 WIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEF 74
W + ES+++ +GLVRQHLDS+N F+ LQ+V+ E G I ++P ++K GKIR +P
Sbjct: 8 WAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEIVTEVPGLKIKLGKIRYEKPSI 67
Query: 75 QEPH-GQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVCR 133
+E G + + PM+AR+RNLTYS+P++L MIPV IE EP+E+ IG+LPIMLKS
Sbjct: 68 RETDKGPMREITPMEARLRNLTYSSPIFLSMIPVENNIEGEPIEIYIGDLPIMLKSVADP 127
Query: 134 LYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVE--KDERQEKYIAKV 191
L D+L ++GEDPKDPGGYFI+NGSE++I++ ED+A NR LV+ K ++AKV
Sbjct: 128 TSNLPIDKLIEIGEDPKDPGGYFIVNGSEKMIIAQEDLATNRVLVDYGKSGSNITHVAKV 187
Query: 192 FSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDPEVQ 251
S GYR V +ER KD + + VP + F +MRALG D+DIV AV DP++Q
Sbjct: 188 TSSAAGYRVQVMIERLKDSTIQISFATVPGRIPFAIIMRALGFVTDRDIVYAVSLDPQIQ 247
Query: 252 QILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRI 311
L +LE AS IT+ +EAL++IG VA GQ RE R+++AE VID LPH+G SPEDR
Sbjct: 248 NELLPSLEQASSITSAEEALDFIGNRVAIGQKRENRIQKAEQVIDKYFLPHLGTSPEDRK 307
Query: 312 RKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQM 371
+K YYL K++EL LG+R+ DDKDHYANKR+RLAGDL LFRVAF VKD+ YQ+
Sbjct: 308 KKGYYLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQL 367
Query: 372 TKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVS 431
K+ + RG + + +R D++TERI HALATG W GGRTGVSQLLDRTN++S
Sbjct: 368 EKS-KVRGRRLSLTAL-------VRADIITERIRHALATGNWVGGRTGVSQLLDRTNWLS 419
Query: 432 TLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVP 491
LSHLRRV S L R QP+FEARDLHGT WGR+CP ETPEGPN GLVKNLAL+AQ++ +
Sbjct: 420 MLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGIN 479
Query: 492 EEEVKEYLMSLGIVPIE--VRRPSPE--------LW-RVYLNGVIIGTIEDGKALVERIK 540
E V+ LG+V +E +RR S + W +VYLNG ++G EDGK L ++I+
Sbjct: 480 ESVVERVAYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYYEDGKELAKKIR 539
Query: 541 KDRRSGKISDIINVAYY--EDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGR 598
+ RR GK+SD +NVAY + + EV++N D GRVRRPLIIV NG P + E ++ +K G
Sbjct: 540 ESRRQGKLSDEVNVAYIATDYLNEVHINCDAGRVRRPLIIVNNGTPLVDTEDIKKLKNGE 599
Query: 599 LKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHN 658
+ + DLV+ G IE++DAEEEENAYVA+ P ++T +HTHLE+ P+AILG+ AS+IPYPEHN
Sbjct: 600 ITFDDLVKQGKIEFIDAEEEENAYVALNPQDLTPDHTHLEIWPSAILGIIASIIPYPEHN 659
Query: 659 AAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQN 718
+PRNTY + MAKQSLGL +N++IR DTR HLLHYPQ+PLV +R++ +GY DRPAG N
Sbjct: 660 QSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTRMLGVIGYNDRPAGAN 719
Query: 719 FVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVR 778
++A+++Y GYNMED+II+NK+SIERG+ RSTFFR Y EE KY GGQ DK P V+
Sbjct: 720 AILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTEEVKYPGGQEDKIVTPEAGVK 779
Query: 779 GYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEE-RGLGAVSLQERRETSVAV 837
GY+G+ YYR L+++G++ PE +V+G DVLIG+ SPPRFL+E + L Q +R+TS+
Sbjct: 780 GYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPE--QAKRDTSIVT 837
Query: 838 RPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPW 897
R E G+VD V+ITET +G KLVKV VRDLRIPEIGDKFA+RHGQKGV+G+++ Q DMP+
Sbjct: 838 RHGENGIVDLVLITETLEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVVGILIDQVDMPY 897
Query: 898 TESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE-EKLRKELE 956
T GIVPD+I+NPH +PSRMT+GQ++EAIGGK AAL G+ VD T F+ P+ ++++KE+
Sbjct: 898 TAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAALSGKPVDATPFLETPKLQEMQKEIL 957
Query: 957 ELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTE 1016
+LG E++YDG TG++ ++ I G++YYQ+LHHMVADK+HAR+RGPVQ+LT+QPTE
Sbjct: 958 KLGHLPDSTEVVYDGRTGQKLKSRILFGIVYYQKLHHMVADKMHARARGPVQILTRQPTE 1017
Query: 1017 GRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVY 1076
GRAREGGLRFGEMERD L+G G AML+ +RLL+ S K V++C+ CG++ D+ +++
Sbjct: 1018 GRAREGGLRFGEMERDCLIGFGTAMLIKDRLLDNSYKAVVYICDQCGYVGWYDRSKNRYV 1077
Query: 1077 CPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTERV 1117
CPV G++ + V +SYAFKLL+ EL +MVI P+L L E+V
Sbjct: 1078 CPVHGDKSVLHPVTVSYAFKLLIQELMSMVISPRLILGEKV 1118
>sp|Q03587|RPOB_THEAC DNA-DIRECTED RNA POLYMERASE SUBUNIT B >gi|280358|pir||S26722
DNA-directed RNA polymerase (EC 2.7.7.6) chain B -
Thermoplasma acidophilum >gi|809775|emb|CAA48280.1|
(X68198) DNA-directed RNA polymerase [Thermoplasma
acidophilum] >gi|10639562|emb|CAC11534.1| (AL445064)
probable DNA-directed RNA polymerase chain B
[Thermoplasma acidophilum]
Length = 1195
Score = 1207 bits (3089), Expect = 0.0
Identities = 619/1200 (51%), Positives = 833/1200 (68%), Gaps = 115/1200 (9%)
Query: 17 VMESYWQEKGLVRQHLDSYNAFI------DRGLQEVVDE-------------FGGIKPDI 57
++++Y+++ G+V LDS N+F + +Q++VDE K
Sbjct: 4 IVDAYFKKYGIVNHQLDSMNSFYATPDNPNSVMQQIVDETKVSDDADPGYFVLDPAKTGG 63
Query: 58 PDFEVKFGKIR------------VGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMI 105
D + +G++R +G+PE +E G + P +AR+R+L Y AP+ L++
Sbjct: 64 HDIRIYYGRVRENGHYVGEQTIFIGKPEIKEASGASNQITPNEARLRDLNYLAPVTLKLR 123
Query: 106 PVIRGIEQEPVEVRIGELPIMLKSKVCRL---------------YGLSDDE-LRQLGEDP 149
V GIE+ +++G+LP+M++SK+C L GLS E L+ +GEDP
Sbjct: 124 IVEDGIEKGSEIIKVGDLPVMVRSKICTLSEENLDQYIEKNNGPIGLSRREKLQYVGEDP 183
Query: 150 KDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYI--AKVFSYRHGYRALVTVERK 207
DPGGYFII GSERVIVS+ED+APN+ +VE ++R E + +KVFS R G+RAL ++E+
Sbjct: 184 DDPGGYFIIGGSERVIVSLEDLAPNKIMVEWEDRYESKVEVSKVFSQRGGFRALTSMEKG 243
Query: 208 KDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASD---- 263
DG + V IP+V V V +M+ALGLERD D+ DA+ + PE++ I++ N+ED+ +
Sbjct: 244 TDGTINVSIPSVAGTVPLVILMKALGLERDVDVHDAIASVPEMEPIIYSNIEDSKNPKVL 303
Query: 264 ----ITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGM 319
+ T ++A+ Y+ K A GQA+E+R K+ ++D++LLPH+G SP DRIRKA YLG
Sbjct: 304 PPNGVNTTEDAISYLEKRFAAGQAKEFRDKKISQMLDHSLLPHLGDSPSDRIRKAIYLGR 363
Query: 320 MALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQR-R 378
MA ++ELSLG R EDDKDH ANKR++LAGDL+ +LFR AF ++KD++YQ+ KTY R R
Sbjct: 364 MARSLLELSLGIRKEDDKDHLANKRIKLAGDLMDELFRSAFQSVMKDLKYQLEKTYNRKR 423
Query: 379 GEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRR 438
G K IR ++R D+LT+R+ HA++TG W GGRTGVSQLLDR + +ST+SHLRR
Sbjct: 424 GIK---------IRPAVRQDLLTQRVLHAMSTGNWIGGRTGVSQLLDRVSNLSTISHLRR 474
Query: 439 VTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEY 498
+ SPL R QPHFEARDLH T WGRICP ETPEG NCGLVKN AL+ +T + + V E
Sbjct: 475 IISPLTRTQPHFEARDLHPTQWGRICPNETPEGQNCGLVKNAALLINVTQGIDPDSVMEI 534
Query: 499 LMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYE 558
L + + EV SP+ RVYLNG IG +D + LV RI+++RRSG++SD +NV Y +
Sbjct: 535 LKGMDVR--EVLEESPKKGRVYLNGDFIGYHDDPRYLVSRIREERRSGRMSDEVNVRYDD 592
Query: 559 DVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEE 618
+ EV VNSD GR+RRPL+I+++GK L + ++ +K G + + DLV+ G IE+LDAEEE
Sbjct: 593 NTNEVIVNSDRGRLRRPLLILKDGKTVLDRTMIERLKHGEISFEDLVKQGAIEWLDAEEE 652
Query: 619 ENAYVAMWPWEVTE-------------------------------------------EHT 635
E+ YVA++ +++ E E+T
Sbjct: 653 EDTYVAVYAYDIPEKCPHCNSYLYRSMVDWVNPGESEITLECGFCHQRFNVPSKLSKENT 712
Query: 636 HLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYP 695
HLE+ PA ILG+ AS+IPYPEHN++PR T + MAKQSLG +N RIR DTRGHLLHYP
Sbjct: 713 HLEIDPAMILGVVASIIPYPEHNSSPRITIASAMAKQSLGFAQSNVRIRPDTRGHLLHYP 772
Query: 696 QIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTY 755
Q+PLV +R+M + Y+ RPAGQNFVVAVL+Y GYN++DA++INKA+IERGL RSTFFRTY
Sbjct: 773 QVPLVRTRVMDYIHYDRRPAGQNFVVAVLSYEGYNIQDALVINKAAIERGLGRSTFFRTY 832
Query: 756 EAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPR 815
AEE++Y GGQ DKFEIP+ + G R E+YY++LD+ G+IFPE+ VEG DVLIG+TSPPR
Sbjct: 833 SAEERRYPGGQEDKFEIPTHDIIGARAEEYYKNLDDSGIIFPEAYVEGSDVLIGKTSPPR 892
Query: 816 FLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDK 875
FLEE G + Q RRE+SV +RP+E G VD V +T + +++VK+ VR RIPE+GDK
Sbjct: 893 FLEE-GEERLGPQRRRESSVTMRPNESGYVDNVFLTVSESNSRVVKIKVRSERIPELGDK 951
Query: 876 FASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKG 935
FASRHGQKGV+GL+VPQEDMP+TE GI+PDLI NPH IPSRMTVG +LE IGGK+A+ G
Sbjct: 952 FASRHGQKGVVGLVVPQEDMPFTEDGIIPDLIFNPHSIPSRMTVGHILEMIGGKIASRTG 1011
Query: 936 RRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMV 995
R +DGT F GEPE+ LR L + GF+ + E+MYDGITG+RF+ADIFVGVIYYQ+LHHMV
Sbjct: 1012 RFIDGTIFSGEPEKSLRDALVKYGFRKSSTEVMYDGITGRRFKADIFVGVIYYQKLHHMV 1071
Query: 996 ADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTE 1055
A K HARSRGPVQ+LT+QPTEGR+R+GGLRFGEMERD L+ HGAAM++ +RLL++SD T
Sbjct: 1072 AGKFHARSRGPVQILTRQPTEGRSRQGGLRFGEMERDTLIAHGAAMVIKDRLLDQSDGTV 1131
Query: 1056 VWVCEN--CGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNL 1113
++VC N CGHIA+ D+R+ + CPVCG I +E SYAFKL+ DEL ++ + +L L
Sbjct: 1132 LYVCGNPSCGHIAIYDRRKGTLRCPVCGNTGNIYPIETSYAFKLMRDELISLGVVMRLML 1191
>pir||G72571 probable DNA-directed RNA polymerase subunit B APE1856 - Aeropyrum
pernix (strain K1) >gi|5105547|dbj|BAA80860.1| (AP000062)
1169aa long hypothetical DNA-directed RNA polymerase
subunit B [Aeropyrum pernix]
Length = 1169
Score = 1080 bits (2762), Expect = 0.0
Identities = 564/1157 (48%), Positives = 779/1157 (66%), Gaps = 57/1157 (4%)
Query: 8 EVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPD----------- 56
E+ D+LW V +S+ +E GL RQHLDS+N + + +Q+++D ++P
Sbjct: 12 EIGVDELWTVYKSFIRETGLARQHLDSFNRLVTQEIQKIIDSIREVRPQWRIYAGRRRYR 71
Query: 57 ----------IPDFEVKFGKIRVGEPEFQEP-HGQRKPLYPMDARIRNLTYSAPLYLEMI 105
+PD ++ FGK R EP +E + + P + R+R +TYSAPL +EM
Sbjct: 72 RGRFEEHEIHLPDVKIVFGKARFKEPMAREVIESFDRRVTPFECRVRGITYSAPLMVEMT 131
Query: 106 PVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVI 165
V + ++ EV+I + P+M+KS + L ++ + ++GEDP DPGGYFIINGSE+VI
Sbjct: 132 IVQDNMIEKTREVKIADFPVMVKSVLDPLSKYDEETVIEMGEDPGDPGGYFIINGSEKVI 191
Query: 166 VSIEDIAPNRTLVEKDERQEKYI---AKVFSYRHGYRALVTVERKKDGILYVGIPNVPKP 222
V+ ED+A NR +V K I AK S G R V+R DG L + +
Sbjct: 192 VAQEDLAVNRIIVNKSTAATARITHTAKAVSTVLGLRRQAIVDRMSDGTLEASLSRLRYR 251
Query: 223 VKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDIT-TQQEALEYIGKLVAPG 281
+ V ++RALGLE+D +I+ AV DP+VQ+ + +LE + T+++AL+Y+G +APG
Sbjct: 252 IPLVVLLRALGLEKDMEIMLAVSADPDVQREMLPSLEKGRALAPTKEDALKYLGNRIAPG 311
Query: 282 QAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYA 341
Q + R++RAE +D LLPH+G PEDRI+KAY+L MA +V++L LGKR EDDKD
Sbjct: 312 QPLDVRIRRAEEFLDTQLLPHLGNRPEDRIKKAYFLAEMANRVLQLYLGKRGEDDKDFLG 371
Query: 342 NKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNS--IRPDV 399
NKRLRLAGDL+ +LFR + L + ++ + R R IR +RP +
Sbjct: 372 NKRLRLAGDLIAELFRESLEALANTMAQKLEEQLAER----------RQIRLDFLVRPTI 421
Query: 400 LTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTH 459
+++R++ A+ATG W RTG+SQ LDRTN++S LSHLRRV SPL R Q HFEARDLHG+H
Sbjct: 422 ISDRLKGAIATGNWGQDRTGISQQLDRTNWISLLSHLRRVISPLSRGQAHFEARDLHGSH 481
Query: 460 WGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMS-LGIVPIE-------VRR 511
WGR CP ETPEG NCGLVKNLAL A I+ V E V+E L+ LG+ P+E
Sbjct: 482 WGRYCPFETPEGINCGLVKNLALSAYISVGVDESVVEEILVKDLGVAPLERILEEAKQAG 541
Query: 512 PSPELW----RVYLNGVIIGTIEDGKALVERIKKDRRSGK--ISDIINVAYYE----DVR 561
PE+ +V++NG +G +G L +I++ RRS K + V+ Y ++
Sbjct: 542 EPPEIMLKGTKVFINGRPLGYHPNGAELARKIRELRRSDKLEVERPWEVSVYHLREGEID 601
Query: 562 EVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENA 621
E+YVN+D GR+ RP+++VENG+PKLT+EHV+ + G + + DLV+ GV+E LD EEE+NA
Sbjct: 602 ELYVNTDSGRLMRPVVVVENGEPKLTREHVEKLSRGEITFWDLVKQGVVEMLDPEEEQNA 661
Query: 622 YVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANF 681
+A PWEVT+EHTH+EL AI+G+ A+ I Y EHN +PRNTY A MAKQ+LG+ N+
Sbjct: 662 LIAELPWEVTKEHTHMELWVPAIVGVAAATIGYLEHNQSPRNTYQAAMAKQALGVYALNY 721
Query: 682 RIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKAS 741
RIR+D+ +LL YPQ+P+V +R++ +GY +RPAGQN VVA+++Y GYN+EDA+I NK S
Sbjct: 722 RIRLDSHSYLLQYPQVPIVQTRMLDIMGYNERPAGQNMVVAIMSYTGYNIEDALIFNKGS 781
Query: 742 IERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPT-VRGYRGEKYYRHLDEDGLIFPESK 800
I+ GLAR+ FFR Y E +Y GG+ D+ +P P V YRG Y L+ DG++ PE++
Sbjct: 782 IDMGLARAYFFRVYTGIENEYPGGERDRITLPKPDEVYDYRGAAAYAKLEADGIVAPETE 841
Query: 801 VEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLV 860
VEG ++LIGR SPPRFL E + +++ RR+TS+ +R E+GVVD V+I+ T + KLV
Sbjct: 842 VEGGEILIGRVSPPRFLGEGRVISMATVRRRDTSIPMRLGEKGVVDMVVISTTVERNKLV 901
Query: 861 KVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVG 920
KV VR+LRIPEIGDKFASRHGQKGVIG+I P+ DMP+TE GI PD+I+NPH IPSRMTVG
Sbjct: 902 KVRVRNLRIPEIGDKFASRHGQKGVIGMIFPRYDMPYTEEGIEPDVILNPHAIPSRMTVG 961
Query: 921 QLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEAD 980
QLLE I GK+ A+KGR VD T F E + LR EL + G+ RE+MYDG TG+ EA
Sbjct: 962 QLLEEIAGKLGAIKGRFVDATPFFKEDIDGLRIELLKEGYDPNAREVMYDGRTGQIIEAP 1021
Query: 981 IFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAA 1040
I +GV YYQRL+HMVADKIHAR+ G V +LT+QPTEG+AR+GGLRFGEMERD LVGHGA+
Sbjct: 1022 ITIGVAYYQRLYHMVADKIHARATGRVHLLTRQPTEGKARQGGLRFGEMERDCLVGHGAS 1081
Query: 1041 MLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLD 1100
MLL +R+L+ SD ++VC CG+IA ++R+ + CP+ GEE I V++ YAFKLLL
Sbjct: 1082 MLLRDRMLDNSDAYVMYVCNTCGNIAWFNRRKKVLECPIHGEEGDIRPVKVPYAFKLLLQ 1141
Query: 1101 ELKAMVIRPKLNLTERV 1117
E+ +M+I+P+L + +++
Sbjct: 1142 EITSMMIKPELKVADKI 1158
>sp|Q42877|RPB2_LYCES DNA-DIRECTED RNA POLYMERASE II 135 KDA POLYPEPTIDE (RNA POLYMERASE II
SUBUNIT 2) >gi|2129929|pir||S65068 DNA-directed RNA
polymerase (EC 2.7.7.6) II second largest chain - tomato
>gi|1049068|gb|AAC49273.1| (U28403) RNA polymerase II
subunit 2 [Lycopersicon esculentum]
Length = 1191
Score = 881 bits (2251), Expect = 0.0
Identities = 486/1176 (41%), Positives = 708/1176 (59%), Gaps = 91/1176 (7%)
Query: 8 EVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIK------------P 55
E+T +D W V+ +Y++EKGLVRQ LDS++ FI +QE+VDE I+
Sbjct: 19 EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQS 78
Query: 56 DIPD--FEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVI--RGI 111
D + +++ FG+I + +P E G+ L+P AR+RNLTYSAPLY+++ + +G
Sbjct: 79 DFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 138
Query: 112 EQEPV-------EVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERV 164
+ E V +V IG++PIML+S C LY S+ +L +LGE P D GGYFIINGSE+V
Sbjct: 139 DGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKV 198
Query: 165 IVSIEDIAPNRTLVEKDERQEKY--IAKVFSYRHGYRALVTVERKKDGILYVG------- 215
+++ E ++ N V K + KY +A+V R++ + + ++V
Sbjct: 199 LIAQEKMSTNHVYVFKKRQPNKYAFVAEV-------RSMADTQNRPPSTMFVRMLSRTSA 251
Query: 216 ------------IPNVPKPVKFVYVMRALGLERDKDIVDAVG---NDPEVQQILFDNLED 260
+P + + + V RALG DKDI++ + ND ++ ++L +LE+
Sbjct: 252 KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEE 311
Query: 261 ASDITTQQEALEYIGKLVAP-GQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGM 319
A I QQ AL+YIGK A G RE R+K A+ ++ +LPH+GV +KAYY G
Sbjct: 312 AFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGY 371
Query: 320 MALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRG 379
+ +++ +LG+R EDD+DHY NKRL LAG LL LFR+ F +L +D++ + K
Sbjct: 372 IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGK 431
Query: 380 EKYVFGNIHRFIRNSIRPDVLTERIEHALATGAW-----PGGRTGVSQLLDRTNYVSTLS 434
+ ++ +I+ +T ++++LATG W G R GVSQ+L+R Y STLS
Sbjct: 432 DVN--------LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLS 483
Query: 435 HLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEE 494
HLRR+ SP+ RE + R LH + WG +CP ETPEG CGLVKNLALM IT
Sbjct: 484 HLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYP 543
Query: 495 VKEYLMSLGIVPIEVRRPS--PELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDII 552
+ E+L G E P+ P+ ++++NG +G D LV +++ RR ++ +
Sbjct: 544 ILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEV 603
Query: 553 NVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLK----WSDLVRMG 608
V ++E+ + +D GR RPL IVE + + K+ +Q +++ W DLV G
Sbjct: 604 GVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKG 663
Query: 609 VIEYLDAEEEENAYVAMWPWEV-----------TEEHTHLELMPAAILGLPASLIPYPEH 657
IEY+D EEEE ++M ++ ++ +TH E+ P+ ILG+ AS+IP+P+H
Sbjct: 664 YIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDH 723
Query: 658 NAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQ 717
N +PRNTY + M KQ++G+ N++ R+DT ++L+YPQ PLV +R M+ + + PAG
Sbjct: 724 NQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGI 783
Query: 718 NFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTV 777
N +VA+ Y GYN ED++I+N++SI+RG RS FFR+Y EEKK G K + P
Sbjct: 784 NAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM--GTLVKEDFGRPDR 841
Query: 778 RGYRGEKY--YRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSV 835
G ++ Y LD+DGL P ++V G+DV+IG+T+P ++ G S R++ S
Sbjct: 842 ASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP--ISQDDAQGQASRYTRKDHST 899
Query: 836 AVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDM 895
++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+ QEDM
Sbjct: 900 SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM 959
Query: 896 PWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKEL 955
PWT GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F + + K L
Sbjct: 960 PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL 1019
Query: 956 EELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPT 1015
+ G++ G E MY+G TG+R A IF+G YYQRL HMV DKIH+R RGPVQ+LT+QP
Sbjct: 1020 HKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA 1079
Query: 1016 EGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKV 1075
EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD V VCE CG IA+ + +++
Sbjct: 1080 EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF 1139
Query: 1076 YCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKL 1111
C C + I +V + YA KLL EL AM I P++
Sbjct: 1140 ECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1175
>pir||T05846 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain -
Arabidopsis thaliana >gi|4455279|emb|CAB36815.1|
(AL035527) DNA-directed RNA polymerase (EC 2.7.7.6) II
second largest chain [Arabidopsis thaliana]
>gi|7268968|emb|CAB81278.1| (AL161555) DNA-directed RNA
polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana]
Length = 1188
Score = 872 bits (2229), Expect = 0.0
Identities = 484/1174 (41%), Positives = 704/1174 (59%), Gaps = 87/1174 (7%)
Query: 8 EVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIK------------P 55
E+T +D W V+ +Y++EKGLVRQ LDS++ FI +QE+VDE I+
Sbjct: 20 EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQS 79
Query: 56 DIPD--FEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVI--RGI 111
D + +++ FG+I + +P E G+ L+P AR+RNLTYSAPLY+++ + +G
Sbjct: 80 DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 139
Query: 112 EQEPV-------EVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERV 164
+ E V +V IG++PIML+S C L+ S+ +L +LGE P D GGYFIINGSE+V
Sbjct: 140 DGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKV 199
Query: 165 IVSIEDIAPNRTLVEKDERQEKYIAKVFSYRHGYRALVTVERKKDGILYVG--------- 215
+++ E ++ N V K + KY +Y R++ + + ++V
Sbjct: 200 LIAQEKMSTNHVYVFKKRQPNKY-----AYVGEVRSMAENQNRPPSTMFVRMLARASAKG 254
Query: 216 ----------IPNVPKPVKFVYVMRALGLERDKDIVDAVGND---PEVQQILFDNLEDAS 262
+P + + + V RALG DKDI++ + D ++ ++L +LE+A
Sbjct: 255 GSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAF 314
Query: 263 DITTQQEALEYIGKLVAP-GQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMA 321
I Q AL+YIGK A G +E R+K A ++ +LPH+G+ +KAYY G +
Sbjct: 315 VIQNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYII 374
Query: 322 LKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEK 381
+++ +LG+R EDD+DHY NKRL LAG LL LFR+ F +L +D++ + K E
Sbjct: 375 HRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEV 434
Query: 382 YVFGNIHRFIRNSIRPDVLTERIEHALATGAW-----PGGRTGVSQLLDRTNYVSTLSHL 436
++ +I+ +T ++++LATG W G R GVSQ+L+R Y STLSHL
Sbjct: 435 N--------LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 486
Query: 437 RRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVK 496
RR+ SP+ RE + R LH + WG +CP ETPEG CGLVKNLALM IT +
Sbjct: 487 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 546
Query: 497 EYLMSLGIVPIEVRRPS--PELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINV 554
E+L G E PS P+ ++++NG+ +G D LV+ +++ RR ++ + V
Sbjct: 547 EFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGV 606
Query: 555 AYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLK----WSDLVRMGVI 610
++E+ + +D GR RPL IV+N K + K + A+++ W LV G I
Sbjct: 607 VRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFI 666
Query: 611 EYLDAEEEENAYVAMW----------PWEV-TEEHTHLELMPAAILGLPASLIPYPEHNA 659
EY+D EEEE ++M P E TE +TH E+ P+ ILG+ AS+IP+P+HN
Sbjct: 667 EYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQ 726
Query: 660 APRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNF 719
+PRNTY + M KQ++G+ N++ R+DT ++L+YPQ PLV +R M+ + + PAG N
Sbjct: 727 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 786
Query: 720 VVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRG 779
+VA+ Y GYN ED++I+N++SI+RG RS FFR+Y EEKK G K + P
Sbjct: 787 IVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM--GTLVKEDFGRPDRGS 844
Query: 780 YRGEKY--YRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAV 837
G ++ Y LD+DGL P ++V G+DV+IG+T+P ++ G S RR+ S+++
Sbjct: 845 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP--ISQDEAQGQSSRYTRRDHSISL 902
Query: 838 RPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPW 897
R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+ QEDMPW
Sbjct: 903 RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 962
Query: 898 TESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEE 957
T G+ PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F + + K L +
Sbjct: 963 TIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1022
Query: 958 LGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEG 1017
G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+LT+QP EG
Sbjct: 1023 CGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1082
Query: 1018 RAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYC 1077
R+R+GGLRFGEMERD ++ HGAA L ERL ++SD V VCE CG IA+ + +++ C
Sbjct: 1083 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFEC 1142
Query: 1078 PVCGEEERISKVEMSYAFKLLLDELKAMVIRPKL 1111
C + I +V + YA KLL EL +M I P++
Sbjct: 1143 RGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRM 1176
>pir||S30229 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain -
Arabidopsis thaliana >gi|16486|emb|CAA79528.1| (Z19121)
RNA polymerase II second largest subunit [Arabidopsis
thaliana]
Length = 1188
Score = 866 bits (2213), Expect = 0.0
Identities = 482/1174 (41%), Positives = 703/1174 (59%), Gaps = 87/1174 (7%)
Query: 8 EVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIK------------P 55
E+T +D W V+ +Y++EKGLVRQ LDS++ FI +QE+VDE I+
Sbjct: 20 EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQS 79
Query: 56 DIPD--FEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVI--RGI 111
D + +++ FG+I + +P E G+ L+P AR+RNLTYSAPLY+++ + +G
Sbjct: 80 DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 139
Query: 112 EQEPV-------EVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERV 164
+ E V +V IG++PIML+S C L+ S+ +L +LGE P D GGYFIINGSE+V
Sbjct: 140 DGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKV 199
Query: 165 IVSIEDIAPNRTLVEKDERQEKYIAKVFSYRHGYRALVTVERKKDGILYVG--------- 215
+++ E ++ N V K + KY +Y R++ + + ++V
Sbjct: 200 LIAQEKMSTNHVYVFKKRQPNKY-----AYVGEVRSMAENQNRPPSTMFVRMLARASAKG 254
Query: 216 ----------IPNVPKPVKFVYVMRALGLERDKDIVDAVGND---PEVQQILFDNLEDAS 262
+P + + + V RALG DKDI++ + D ++ ++L +LE+A
Sbjct: 255 GSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAF 314
Query: 263 DITTQQEALEYIGKLVAP-GQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMA 321
I Q AL+YIGK A G +E R+K A ++ +L ++G+ +KAYY G +
Sbjct: 315 VIQNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLLYVGIGEHCETKKAYYFGYII 374
Query: 322 LKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEK 381
+++ +LG+R EDD+DHY NKRL LAG LL LFR+ F +L +D++ + K E
Sbjct: 375 HRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEV 434
Query: 382 YVFGNIHRFIRNSIRPDVLTERIEHALATGAW-----PGGRTGVSQLLDRTNYVSTLSHL 436
++ +I+ +T ++++LATG W G R GVSQ+L+R Y STLSHL
Sbjct: 435 N--------LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 486
Query: 437 RRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVK 496
RR+ SP+ RE + R LH + WG +CP ETPEG CGLVKNLALM IT +
Sbjct: 487 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 546
Query: 497 EYLMSLGIVPIEVRRPS--PELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINV 554
E+L G E PS P+ ++++NG+ +G D LV+ +++ RR ++ + V
Sbjct: 547 EFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGV 606
Query: 555 AYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLK----WSDLVRMGVI 610
++E+ + +D GR RPL IV+N K + K + A+++ W LV G I
Sbjct: 607 VRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFI 666
Query: 611 EYLDAEEEENAYVAMW----------PWEV-TEEHTHLELMPAAILGLPASLIPYPEHNA 659
EY+D EEEE ++M P E TE +TH E+ P+ ILG+ AS+IP+P+HN
Sbjct: 667 EYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQ 726
Query: 660 APRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNF 719
+PRNTY + M KQ++G+ N++ R+DT ++L+YPQ PLV +R M+ + + PAG N
Sbjct: 727 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 786
Query: 720 VVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRG 779
+VA+ Y GYN ED++I+N++SI+RG RS FFR+Y EEKK G K + P
Sbjct: 787 IVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM--GTLVKEDFGRPDRGS 844
Query: 780 YRGEKY--YRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAV 837
G ++ Y LD+DGL P ++V G+DV+IG+T+P ++ G S RR+ S+++
Sbjct: 845 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP--ISQDEAQGQSSRYTRRDHSISL 902
Query: 838 RPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPW 897
R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+ QEDMPW
Sbjct: 903 RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 962
Query: 898 TESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEE 957
T G+ PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F + + K L +
Sbjct: 963 TIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1022
Query: 958 LGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEG 1017
G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+LT+QP EG
Sbjct: 1023 CGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1082
Query: 1018 RAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYC 1077
R+R+GGLRFGEMERD ++ HGAA L ERL ++SD V VCE CG IA+ + +++ C
Sbjct: 1083 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFEC 1142
Query: 1078 PVCGEEERISKVEMSYAFKLLLDELKAMVIRPKL 1111
C + I +V + YA KLL EL +M I P++
Sbjct: 1143 RGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRM 1176
>sp|P38420|RPB2_ARATH DNA-DIRECTED RNA POLYMERASE II 135 KDA POLYPEPTIDE (RNA POLYMERASE II
SUBUNIT 2) >gi|421848|pir||S30228 DNA-directed RNA
polymerase (EC 2.7.7.6) II second largest chain -
Arabidopsis thaliana >gi|16488|emb|CAA79527.1| (Z19120)
RNA polymerase II second largest subunit [Arabidopsis
thaliana]
Length = 1188
Score = 864 bits (2207), Expect = 0.0
Identities = 482/1174 (41%), Positives = 702/1174 (59%), Gaps = 87/1174 (7%)
Query: 8 EVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIK------------P 55
E+T +D W V+ +Y++EKGLVRQ LDS++ FI +QE+VDE I+
Sbjct: 20 EITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQS 79
Query: 56 DIPD--FEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVI--RGI 111
D + +++ FG+I + +P E G+ L+P AR+RNLTYSAPLY+++ + +G
Sbjct: 80 DFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGH 139
Query: 112 EQEPV-------EVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERV 164
+ E V +V IG++PIML+S C L+ S+ +L +LGE P D GGYFIINGSE+V
Sbjct: 140 DGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKV 199
Query: 165 IVSIEDIAPNRTLVEKDERQEKYIAKVFSYRHGYRALVTVERKKDGILYVG--------- 215
+++ E ++ N V K + KY +Y R++ + + ++V
Sbjct: 200 LIAQEKMSTNHVYVFKKRQPNKY-----AYVGEVRSMAENQNRPPSTMFVRMLARASAKG 254
Query: 216 ----------IPNVPKPVKFVYVMRALGLERDKDIVDAVGND---PEVQQILFDNLEDAS 262
+P + + + V RALG DKDI++ + D ++ ++L +LE+A
Sbjct: 255 GSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAF 314
Query: 263 DITTQQEALEYIGKLVAP-GQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMA 321
I Q AL+YIGK A G +E R+K A ++ +L ++G+ +KAYY G +
Sbjct: 315 VIQNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLLYVGIGEHCETKKAYYFGYII 374
Query: 322 LKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEK 381
+++ +LG+R EDD+DHY NKRL LAG LL LFR+ F +L +D++ + K E
Sbjct: 375 HRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEV 434
Query: 382 YVFGNIHRFIRNSIRPDVLTERIEHALATGAW-----PGGRTGVSQLLDRTNYVSTLSHL 436
++ +I+ +T ++++LATG W G R GVSQ+L+R Y STLSHL
Sbjct: 435 N--------LQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL 486
Query: 437 RRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVK 496
RR+ SP+ RE + R LH + WG +CP ETPEG CGLVKNLALM IT +
Sbjct: 487 RRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPIL 546
Query: 497 EYLMSLGIVPIEVRRPS--PELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINV 554
E+L G E PS P+ ++++NG+ +G D LV+ +++ RR ++ + V
Sbjct: 547 EFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGV 606
Query: 555 AYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLK----WSDLVRMGVI 610
++E+ + +D GR RPL IV+N K + K + A+++ W LV G I
Sbjct: 607 VRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFI 666
Query: 611 EYLDAEEEENAYVAMW----------PWEV-TEEHTHLELMPAAILGLPASLIPYPEHNA 659
EY+D EEEE ++M P E TE +TH E+ P+ ILG+ AS+IP+P+HN
Sbjct: 667 EYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQ 726
Query: 660 APRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNF 719
+PRNTY + M KQ++G+ N++ R+DT ++L+YPQ PLV +R M+ + + PAG N
Sbjct: 727 SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 786
Query: 720 VVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRG 779
VA+ Y GYN ED++I+N++SI+RG RS FFR+Y EEKK G K + P
Sbjct: 787 NVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM--GTLVKEDFGRPDRGS 844
Query: 780 YRGEKY--YRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAV 837
G ++ Y LD+DGL P ++V G+DV+IG+T+P ++ G S RR+ S+++
Sbjct: 845 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP--ISQDEAQGQSSRYTRRDHSISL 902
Query: 838 RPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPW 897
R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+ QEDMPW
Sbjct: 903 RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 962
Query: 898 TESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEE 957
T G+ PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F + + K L +
Sbjct: 963 TIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK 1022
Query: 958 LGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEG 1017
G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+LT+QP EG
Sbjct: 1023 CGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG 1082
Query: 1018 RAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYC 1077
R+R+GGLRFGEMERD ++ HGAA L ERL ++SD V VCE CG IA+ + +++ C
Sbjct: 1083 RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFEC 1142
Query: 1078 PVCGEEERISKVEMSYAFKLLLDELKAMVIRPKL 1111
C + I +V + YA KLL EL +M I P++
Sbjct: 1143 RGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRM 1176
>gb|AAF55024.1| (AE003703) RpII140 gene product [Drosophila melanogaster]
Length = 1176
Score = 856 bits (2187), Expect = 0.0
Identities = 480/1167 (41%), Positives = 702/1167 (60%), Gaps = 71/1167 (6%)
Query: 8 EVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDI---------- 57
E+ + WIV+ +Y+ EKGLVRQ LDS++ FI +Q +V++ I+
Sbjct: 21 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVE 80
Query: 58 --PDFEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEP 115
P F +KF +I + +P E G P+ P +AR+RNLTYSAPLY+++ +P
Sbjct: 81 TPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP 140
Query: 116 VEVR-----IGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIED 170
VE + IG++PIML+S C L L+D +L +L E P DPGGYFIINGSE+V+++ E
Sbjct: 141 VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 200
Query: 171 IAPNRTLVEKDERQEKYIAKV---FSYRHGYRALVTV----------ERKKDGI---LYV 214
+A N T+ + KY K H R T+ KK I +
Sbjct: 201 MATN-TVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIA 259
Query: 215 GIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEAL 271
+P + + + + V RALG D+DI++ + +DPE+ +++ +L++A + Q AL
Sbjct: 260 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVAL 319
Query: 272 EYIGKLVA-PGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLG 330
+IG A PG ++ R+K A+ ++ +LPH+GVS +KAY+LG M +++ SLG
Sbjct: 320 NFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 379
Query: 331 KRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRF 390
+R+ DD+DHY NKRL LAG LL LFR F L+K+++ T+ + RG+ +
Sbjct: 380 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVR-MYTQKFIDRGKDFN------- 431
Query: 391 IRNSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTLSHLRRVTSPLD 444
+ +I+ +++T+ + ++LATG W R GVSQ+L+R + STLSHLRRV SP+
Sbjct: 432 LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIG 491
Query: 445 REQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGI 504
R+ + R LH T WG +CP ETPEG GLVKNLALMA I+ + E+L +
Sbjct: 492 RDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 551
Query: 505 VPIEVRRPSP--ELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVR- 561
+E PS + ++++NG +G D + L+ ++K RR I + V+ D+R
Sbjct: 552 ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDII-VSEVSMIRDIRD 610
Query: 562 -EVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKE---GRLKWSDLVRMGVIEYLDAEE 617
E+ + +D GR+ RPL+IVENG L K HV+ +KE W LV GV+EY+D E
Sbjct: 611 REIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLE 670
Query: 618 EENAYVAMWPWEVTEE--------HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGM 669
EE +AM P+++ ++ +TH E+ PA ILG+ AS+IP+P+HN +PRNTY + M
Sbjct: 671 EETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAM 730
Query: 670 AKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGY 729
KQ++G+ NF +R+DT H+L+YP PLV +R M+ + + + PAG N +VA+L Y GY
Sbjct: 731 GKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGY 790
Query: 730 NMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSP-TVRGYRGEKYYRH 788
N ED++I+N +++ERG RS F+R+Y+ E K +G Q + FE P T +G R +Y
Sbjct: 791 NQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNA-HYDK 849
Query: 789 LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKV 848
LD+DG+I P +V G DV+IG+T ++ +R+ S +R SE G+VD+V
Sbjct: 850 LDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQV 909
Query: 849 IITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIV 908
++T +G K K+ VR +RIP+IGDKFASRHGQKG G+ QEDM +T G+ PD+I+
Sbjct: 910 MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIII 969
Query: 909 NPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE-EKLRKELEELGFKHTGREI 967
NPH IPSRMT+G L+E + GK+ + KG D T F +K+ L+E G+ G E+
Sbjct: 970 NPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEV 1029
Query: 968 MYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFG 1027
MY+G TG++ A +F+G YYQRL HMV DKIH+R+RGPVQ+L +QP EGRAR+GGLRFG
Sbjct: 1030 MYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 1089
Query: 1028 EMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERIS 1087
EMERD + HGAA L ERL E SD V +C CG IA+ + R + C C + +IS
Sbjct: 1090 EMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQIS 1149
Query: 1088 KVEMSYAFKLLLDELKAMVIRPKLNLT 1114
+V + YA KLL EL +M I P+L +T
Sbjct: 1150 QVRLPYAAKLLFQELMSMNIAPRLMVT 1176
>pir||A27826 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain -
fruit fly (Drosophila melanogaster)
Length = 1176
Score = 852 bits (2178), Expect = 0.0
Identities = 479/1167 (41%), Positives = 701/1167 (60%), Gaps = 71/1167 (6%)
Query: 8 EVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDI---------- 57
E+ + WIV+ +Y+ EKGLVRQ LDS++ FI +Q +V++ I+
Sbjct: 21 ELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAERQHTSGEVE 80
Query: 58 --PDFEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEP 115
P F +KF +I + +P E G P+ P +AR+RNLTYSAPLY+++ +P
Sbjct: 81 TPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDP 140
Query: 116 VEVR-----IGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIED 170
VE + IG++PIML+S C L L+D +L +L E P DPGGYFIINGSE+V+++ E
Sbjct: 141 VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 200
Query: 171 IAPNRTLVEKDERQEKYIAKV---FSYRHGYRALVTV----------ERKKDGI---LYV 214
+A N T+ + KY K H R T+ KK I +
Sbjct: 201 MATN-TVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIA 259
Query: 215 GIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEAL 271
+P + + + + V RALG D+DI++ + +DPE+ +++ +L++A + Q AL
Sbjct: 260 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVAL 319
Query: 272 EYIGKLVA-PGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLG 330
+IG A PG ++ R+K A+ ++ +LPH+GVS +KAY+LG M +++ SLG
Sbjct: 320 NFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 379
Query: 331 KRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRF 390
+R+ DD+DHY NKRL LAG LL LFR F L+K+++ T+ + RG+ +
Sbjct: 380 RRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVR-MYTQKFIDRGKDFN------- 431
Query: 391 IRNSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTLSHLRRVTSPLD 444
+ +I+ +++T+ + ++LATG W R GVSQ+L+R + STLSHLRRV SP+
Sbjct: 432 LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIG 491
Query: 445 REQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGI 504
R+ + R LH T WG +CP ETPEG GLVKNLALMA I+ + E+L +
Sbjct: 492 RDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 551
Query: 505 VPIEVRRPSP--ELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVR- 561
+E PS + ++++NG +G D + L+ ++K RR I + V+ D+R
Sbjct: 552 ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDII-VSEVSMIRDIRD 610
Query: 562 -EVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKE---GRLKWSDLVRMGVIEYLDAEE 617
E+ + +D GR+ RPL+IVENG L K HV+ +KE W LV GV+EY+ E
Sbjct: 611 REIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYMYTLE 670
Query: 618 EENAYVAMWPWEVTEE--------HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGM 669
EE +AM P+++ ++ +TH E+ PA ILG+ AS+IP+P+HN +PRNTY + M
Sbjct: 671 EETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAM 730
Query: 670 AKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGY 729
KQ++G+ NF +R+DT H+L+YP PLV +R M+ + + + PAG N +VA+L Y GY
Sbjct: 731 GKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGY 790
Query: 730 NMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSP-TVRGYRGEKYYRH 788
N ED++I+N +++ERG RS F+R+Y+ E K +G Q + FE P T +G R +Y
Sbjct: 791 NQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNA-HYDK 849
Query: 789 LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKV 848
LD+DG+I P +V G DV+IG+T ++ +R+ S +R SE G+VD+V
Sbjct: 850 LDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQV 909
Query: 849 IITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIV 908
++T +G K K+ VR +RIP+IGDKFASRHGQKG G+ QEDM +T G+ PD+I+
Sbjct: 910 MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIII 969
Query: 909 NPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE-EKLRKELEELGFKHTGREI 967
NPH IPSRMT+G L+E + GK+ + KG D T F +K+ L+E G+ G E+
Sbjct: 970 NPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEV 1029
Query: 968 MYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFG 1027
MY+G TG++ A +F+G YYQRL HMV DKIH+R+RGPVQ+L +QP EGRAR+GGLRFG
Sbjct: 1030 MYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 1089
Query: 1028 EMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERIS 1087
EMERD + HGAA L ERL E SD V +C CG IA+ + R + C C + +IS
Sbjct: 1090 EMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQIS 1149
Query: 1088 KVEMSYAFKLLLDELKAMVIRPKLNLT 1114
+V + YA KLL EL +M I P+L +T
Sbjct: 1150 QVRLPYAAKLLFQELMSMNIAPRLMVT 1176
>gi|4505941 polymerase (RNA) II (DNA directed) polypeptide B (140kD) [Homo
sapiens] >gi|401012|sp|P30876|RPB2_HUMAN DNA-DIRECTED RNA
POLYMERASE II 140 KDA POLYPEPTIDE (RNA POLYMERASE II
SUBUNIT 2) (RPB2) >gi|346349|pir||S28976 DNA-directed RNA
polymerase (EC 2.7.7.6) II largest chain - human
>gi|36122|emb|CAA45124.1| (X63563) RNA polymerase II 140
kDa subunit [Homo sapiens] >gi|254869|gb|AAB23139.1| RNA
polymerase II second largest subunit, RNA polymerase B
second largest subunit [human, HeLa cells, Peptide, 1174
aa]
Length = 1174
Score = 852 bits (2177), Expect = 0.0
Identities = 480/1166 (41%), Positives = 704/1166 (60%), Gaps = 72/1166 (6%)
Query: 8 EVTPD----DLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEF------------G 51
E+TPD WIV+ SY+ EKGLVRQ LDS++ FI +Q +V++
Sbjct: 16 EITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHAS 75
Query: 52 GIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGI 111
G + P + +KF +I + +P E G P+ P +AR+RNLTYSAPLY+++ +
Sbjct: 76 GEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKE 135
Query: 112 EQEPVEVR-----IGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIV 166
+E ++ + IG++PIML+S C L GL+D +L +L E P DPGGYFIINGSE+V++
Sbjct: 136 GEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLI 195
Query: 167 SIEDIAPNRTLV-EKDERQEKYIAKVFS-YRHGYRALVTV----------ERKKDGI--- 211
+ E +A N V K + + Y + S + R T+ KK I
Sbjct: 196 AQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQR 255
Query: 212 LYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQ 268
+ +P + + V + V RALG D+DI++ + DPE+ +++ +L++A I Q
Sbjct: 256 IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQN 315
Query: 269 EALEYIGKLVA-PGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIEL 327
AL +IG A PG +E R+K A+ V+ +LPH+GVS +KAY+LG M +++
Sbjct: 316 VALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 375
Query: 328 SLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNI 387
+LG+R+ DD+DHY NKRL LAG LL LFR F L+K+++ K + RG+ +
Sbjct: 376 ALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQK-FIDRGKDFN---- 430
Query: 388 HRFIRNSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTLSHLRRVTS 441
+ +I+ ++++ ++++LATG W R GVSQ+L+R + STLSHLRR+ S
Sbjct: 431 ---LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNS 487
Query: 442 PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMS 501
P+ R+ + R LH T WG +CP ETPEG GLVKNLALMA I+ + E+L
Sbjct: 488 PIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEE 547
Query: 502 LGIVPIEVRRPSP--ELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYED 559
+ +E P+ + ++++NG +G +D + L+ ++K RR I + V+ D
Sbjct: 548 WSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDII-VSEVSMIRD 606
Query: 560 VRE--VYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKE---GRLKWSDLVRMGVIEYLD 614
+RE + + +D GR+ RPL+IVE K L K H+ +KE W DLV GV+EY+D
Sbjct: 607 IREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYID 666
Query: 615 AEEEENAYVAMWPWEVTEE-------HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGA 667
EEE +AM P ++ E+ +TH E+ P+ ILG+ AS+IP+P+HN +PRNTY +
Sbjct: 667 TLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS 726
Query: 668 GMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYH 727
M KQ++G+ NF +R+DT H+L+YPQ PLV +R M+ + + + PAG N +VA+ +Y
Sbjct: 727 AMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYT 786
Query: 728 GYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPS-PTVRGYRGEKYY 786
GYN ED++I+N+++++RG RS F+R+Y+ +E K Q + FE P+ T +G R Y
Sbjct: 787 GYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMR-HAIY 845
Query: 787 RHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVD 846
LD+DGLI P +V G DV+IG+T E+ +R+ S +R SE G+VD
Sbjct: 846 DKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVD 905
Query: 847 KVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDL 906
+V++T +G K K+ VR +RIP+IGDKFASRHGQKG G+ QEDMP+T GI PD+
Sbjct: 906 QVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDI 965
Query: 907 IVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE-EKLRKELEELGFKHTGR 965
I+NPH IPSRMT+G L+E + GKV+A KG D T F +K+ L + G+ G
Sbjct: 966 IINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGN 1025
Query: 966 EIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLR 1025
E++Y+G TG++ + IF+G YYQRL HMV DKIH+R+RGP+Q+L +QP EGR+R+GGLR
Sbjct: 1026 EVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLR 1085
Query: 1026 FGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEER 1085
FGEMERD + HGAA L ERL E SD +V VC CG +A+ + R H C C + +
Sbjct: 1086 FGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQ 1145
Query: 1086 ISKVEMSYAFKLLLDELKAMVIRPKL 1111
IS V M YA KLL EL +M I P++
Sbjct: 1146 ISLVRMPYACKLLFQELMSMSIAPRM 1171
>sp|Q10578|RPB2_CAEEL DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT (RNA POLYMERASE
I SUBUNIT 2) >gi|532805|gb|AAA21158.1| (U13875) highly
similar to DNA-directed RNA polymerase II [Caenorhabditis
elegans]
Length = 1193
Score = 845 bits (2159), Expect = 0.0
Identities = 469/1166 (40%), Positives = 691/1166 (59%), Gaps = 67/1166 (5%)
Query: 8 EVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDE------------FGGIKP 55
E + W+V+ +Y+ EKGLVRQ LDS++ F+ +Q +V++ G
Sbjct: 27 EAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDME 86
Query: 56 DIPDFEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIR----GI 111
+ F +KF +I + +P E G P+ P +AR+RNLTY++PLY+++ V+
Sbjct: 87 NPAKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSAT 146
Query: 112 EQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDI 171
E+ +V +G++P+ML+S C L ++D +L +L E P DPGGYF+INGSE+V+++ E +
Sbjct: 147 EKVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKM 206
Query: 172 APNRTLVEKDERQEKYIAKV---FSYRHGYRALVTV------------ERKKDGILYVGI 216
A N T+ + KY K + R T+ ++ G +GI
Sbjct: 207 ATN-TVYVFSMKDGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGI 265
Query: 217 -PNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALE 272
P + + + + V RALG D+DI+ + NDPE+ +++ +L++A I Q AL
Sbjct: 266 LPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEAFVIQEQNVALN 325
Query: 273 YIGKLVA-PGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGK 331
+IG A PG RE R+K A ++ LLPH+GVS +KA+++G M +++ +LG+
Sbjct: 326 FIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGR 385
Query: 332 RDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFI 391
R+ DD+DH NKRL LAG LL LFR F L+K+++ MT +KY+ N +
Sbjct: 386 RELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMR--MT------AQKYINKNDDFAL 437
Query: 392 RNSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTLSHLRRVTSPLDR 445
++ +T + ++LATG W R GVSQ+L+R Y +TLSHLRR SP+ R
Sbjct: 438 DVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGR 497
Query: 446 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIV 505
E + R LH T WG +CP ETPEG GLVKNLALMA I+ E + E+L +
Sbjct: 498 EGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSME 557
Query: 506 PIEVRRPSP--ELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVR-- 561
+E PS + ++++NG +G + L+ +KK RR I + V+ D+R
Sbjct: 558 NLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDII-VSEVSMVRDIRDR 616
Query: 562 EVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEG-----RLKWSDLVRMGVIEYLDAE 616
E+ + +D GRV RPL+IVEN K L K H+ +KE + WSDLV GV+E +D+
Sbjct: 617 EIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSM 676
Query: 617 EEENAYVAMWPWEVT-----EEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAK 671
EEE + +AM P ++ + HTH E+ PA ILG+ AS+IP+P+HN +PRNTY + M K
Sbjct: 677 EEETSMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGK 736
Query: 672 QSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNM 731
Q++G+ NF +R+DT H+L+YPQ PLV +R M+ + + + PAG N +VA+L+Y GYN
Sbjct: 737 QAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQ 796
Query: 732 EDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDE 791
ED++I+N ++I+RGL RS F+R+Y E + E P+ Y LDE
Sbjct: 797 EDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDE 856
Query: 792 DGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIIT 851
DG+I P +V G DV+IG+T +++ + +R+ S +R SE G+VD+V+++
Sbjct: 857 DGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGIVDQVMLS 916
Query: 852 ETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPH 911
DG K VK+ +R +R+P+IGDKFASRHGQKG +G++ QEDMP+T G+ PD+I+NPH
Sbjct: 917 LNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPH 976
Query: 912 GIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE-EKLRKELEELGFKHTGREIMYD 970
+PSRMT+G L+E + GK++A KG D T F +K+ L E G+ G E+MY+
Sbjct: 977 AVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYN 1036
Query: 971 GITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEME 1030
G TGK+ IF G YYQRL HMV DKIH+R+RGP+Q++ +QP EGRAR+GGLRFGEME
Sbjct: 1037 GHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEME 1096
Query: 1031 RDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVE 1090
RD + HGA L ERL E SD V+VC NCG I + + R + C C + ++S V
Sbjct: 1097 RDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVR 1156
Query: 1091 MSYAFKLLLDELKAMVIRPKLNLTER 1116
+ YA KLL EL +M I P+L + R
Sbjct: 1157 IPYACKLLFQELMSMSIAPRLMVKPR 1182
>sp|Q02061|RPB2_SCHPO DNA-DIRECTED RNA POLYMERASE II 138 KD POLYPEPTIDE (RNA POLYMERASE II
SUBUNIT 2) >gi|479866|pir||S35548 DNA-directed RNA
polymerase (EC 2.7.7.6) II chain 2 - fission yeast
(Schizosaccharomyces pombe) >gi|218554|dbj|BAA02600.1|
(D13337) RNA polymerase II second largest subunit
[Schizosaccharomyces pombe]
Length = 1210
Score = 845 bits (2159), Expect = 0.0
Identities = 487/1204 (40%), Positives = 704/1204 (58%), Gaps = 112/1204 (9%)
Query: 9 VTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFG-----------GIKPDI 57
+T +D W V+ S+++E L RQ L S++ F+ +QE+VD+ G + D+
Sbjct: 12 LTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDV 71
Query: 58 PD-FEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEM-----------I 105
+E+ FG+I + P E G ++P +AR+RNLTYS+PLY++M +
Sbjct: 72 TRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNV 131
Query: 106 PV------IRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIIN 159
P+ + ++EP +V IG++PIML+S C L G+SD EL L E P D GGYFIIN
Sbjct: 132 PIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIIN 191
Query: 160 GSERVIVSIEDIAPNRTLVEKDERQEK--YIAKVFS-YRHGYRALVTVERK--------K 208
GSE+VI++ E A N V K Y+A++ S G R + +++ K
Sbjct: 192 GSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENS 251
Query: 209 DGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDP---EVQQILFDNLEDASDIT 265
+ +P + + V V RALG+ D+DI++ + DP ++ +++ +E+A I
Sbjct: 252 GQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFVIQ 311
Query: 266 TQQEALEYIGKLVAP-GQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKV 324
+ AL+YIGK + G RE RL+ A ++ LLPHI RKA++LG M ++
Sbjct: 312 DKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRM 371
Query: 325 IELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVF 384
+ +L +R+ DD+DH+ KRL LAG LL LFR+ F ++ +D+ M K + E
Sbjct: 372 LLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNREFN-- 429
Query: 385 GNIHRFIRNSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTLSHLRR 438
+ +++ +++T + ++LATG W R GVSQ+L+R + STLSHLRR
Sbjct: 430 ------LTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRR 483
Query: 439 VTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEY 498
+P+ R+ + R LH THWG +CP ETPEG CGLVKNL+LM+ ++ P + E+
Sbjct: 484 TNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEF 543
Query: 499 LMSLGIVPIEVRRPS--PELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAY 556
L G+ +E PS P +V++NGV +G D L E ++ RR IS +++
Sbjct: 544 LEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVR 603
Query: 557 YEDVREVYVNSDDGRVRRPLIIVEN-------GKPKLTKEHVQAI----------KEGRL 599
+E+ + +D GR+ RPL IV+N G+ + KEH+Q + E R
Sbjct: 604 DIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRF 663
Query: 600 KWSDLVRMGVIEYLDAEEEENAYVAMWP------------WEVTEE-------------- 633
W+ LV G+IEYLDAEEEE +AM P +EV EE
Sbjct: 664 GWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPH 723
Query: 634 ---HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGH 690
TH E+ PA ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ N+++R+DT +
Sbjct: 724 VHARTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMAN 783
Query: 691 LLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARST 750
+L+YPQ PL +R M+ + + + PAGQN +VA+L Y GYN ED+II+N+ASI+RGL RS
Sbjct: 784 ILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSI 843
Query: 751 FFRTYEAEEKKYLGGQTDKFEIP--SPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLI 808
F+RTY +EKK ++FE P S T+R G Y L++DGLI P ++V G+D++I
Sbjct: 844 FYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGT--YDKLEDDGLIAPGTRVSGEDIII 901
Query: 809 GRTSP-PRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDL 867
G+T+P P EE G L +R+ S +R +E G+VD+V++T +G K VKV +R
Sbjct: 902 GKTAPIPLDHEELGQ-RTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRST 960
Query: 868 RIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIG 927
RIP+IGDKFASRHGQKG IG+ EDMP++ GIVPD+I+NPH IPSRMTV L+E
Sbjct: 961 RIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQL 1020
Query: 928 GKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIY 987
KV+AL G D T F E + K L GF+ G E+MY G TG++ A +F+G Y
Sbjct: 1021 SKVSALSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTY 1080
Query: 988 YQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERL 1047
YQRL H+V DKIHAR+RGPVQ+LT+QP EGR+R+GGLRFGEMERD + HG + +L ERL
Sbjct: 1081 YQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERL 1140
Query: 1048 LEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVI 1107
+ SD V VC+ CG IA+ ++ C C R S+V + YA KLL EL +M I
Sbjct: 1141 FDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNI 1200
Query: 1108 RPKL 1111
P+L
Sbjct: 1201 APRL 1204
>gb|AAF19059.1|AF107787_1 (AF107787) DNA-dependent RNA polymerase II RPB140 [Candida albicans]
Length = 1210
Score = 834 bits (2132), Expect = 0.0
Identities = 478/1202 (39%), Positives = 706/1202 (57%), Gaps = 123/1202 (10%)
Query: 9 VTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPD--------- 59
+T +D W V+ S++QEKGLV Q LDS++ F++ +QE+V E + D P
Sbjct: 20 ITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEKDHE 79
Query: 60 ---FEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVI-------- 108
+E+ FGKI + +P E G ++P +AR+RNLTYS+PLY++M +
Sbjct: 80 NKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDDNKR 139
Query: 109 -----RGIEQEP-----VEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFII 158
I++EP +V +G++PIML+SK C L L++ E +L E P D GGYF+I
Sbjct: 140 KDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVI 199
Query: 159 NGSERVIVSIEDIAPNRTLVEKDERQE--KYIAKVFS-YRHGYRALVTVERKKDG----- 210
NGSE+V+++ E A N V K ++A++ S G R + +++ K G
Sbjct: 200 NGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEKG 259
Query: 211 ----ILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASD 263
+ +P + + + V V RALG+ D DI++ + ND ++ ++L +E+
Sbjct: 260 VSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFV 319
Query: 264 ITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALK 323
I ++ AL++IG+ G RE R++ A+ ++ LLP+I RKA++LG M +
Sbjct: 320 IQEREVALDFIGRRGVLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNR 379
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
++ +L +++ DD+DH+ KRL LAG LL +LFR+ F +L KDI M + + G+ V
Sbjct: 380 LLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENGGDFNV 439
Query: 384 FGNIHRFIRNSIRPDVLTERIEHALATGAWP------GGRTGVSQLLDRTNYVSTLSHLR 437
+++ +T+ + ++LATG W R GVSQ+L+R Y STLSHLR
Sbjct: 440 --------TLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLR 491
Query: 438 RVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKE 497
R +P+ R+ + R LH THWG +CP ETPEG CGLVKNL+LM I+ P E +
Sbjct: 492 RTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILG 551
Query: 498 YLMSLGIVPIEVRRPS--PELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVA 555
+L G+ +E PS P+ RV++NGV +G D ALV+ +++ RRSG +S +++
Sbjct: 552 FLRDYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGDLSPEVSII 611
Query: 556 YYEDVREVYVNSDDGRVRRPLIIVEN-------GKPKLTKEHVQAI-------------K 595
+E + +D GRV RPL IV++ G+ K+TKEHV+ + +
Sbjct: 612 RDIREKEFKIFTDAGRVYRPLFIVDDNPDSETKGELKITKEHVKQLLRSDELDEDDEDYE 671
Query: 596 EGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEV------------------------- 630
R WS LV G++EY+DAEEEE +AM P +V
Sbjct: 672 NSRYTWSSLVADGIVEYVDAEEEETIMIAMTPDDVKASKNSVSESEQQKIQLEEQELDPG 731
Query: 631 ----------TEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWAN 680
T +TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ N
Sbjct: 732 KRIKPTTSGNTHTYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTN 791
Query: 681 FRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKA 740
+ +R+DT ++L+YPQ PL +R M+ + + + PAGQN +VA+ Y GYN ED++I+N++
Sbjct: 792 YSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQS 851
Query: 741 SIERGLARSTFFRTYEAEEKKYLGGQTDKFEIP--SPTVRGYRGEKYYRHLDEDGLIFPE 798
SI+RGL RS FFR+Y EK+ + FE P S T+R G Y LDEDGLI P
Sbjct: 852 SIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTRSDTLRLKHGT--YEKLDEDGLIAPG 909
Query: 799 SKVEGKDVLIGRTSP-PRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGT 857
+V G+D++IG+T+P P EE G +R+ S +R +E G+VD+V++T GDG+
Sbjct: 910 VRVSGEDIIIGKTTPIPADAEELGQ-RTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGS 968
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917
K VKV +R ++P+IGDKFASRHGQKG IG+ EDMP+T GIVPDLI+NPH IPSRM
Sbjct: 969 KFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRM 1028
Query: 918 TVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRF 977
TV L+E + KV++L G D + F E++ L + G++ G E+MY+G TGK+
Sbjct: 1029 TVAHLIECLLSKVSSLSGFEGDASPFTDVTTEQISTLLRDHGYQSRGFEVMYNGHTGKKL 1088
Query: 978 EADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGH 1037
A +F G YYQRL HMV DKIHAR+RGPVQVLT+QP EGR+R+GGLRFGEMERD ++ H
Sbjct: 1089 MAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAH 1148
Query: 1038 GAAMLLIERLLEESDKTEVWVCENCGHIA-LEDKRRHKVYCPVCGEEERISKVEMSYAFK 1096
GAA L ERL+E SD V VC CG ++ + + ++++ C C + I ++ + YA K
Sbjct: 1149 GAAGFLKERLMEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAK 1208
Query: 1097 LL 1098
LL
Sbjct: 1209 LL 1210
>gi|6324725 second largest subunit of RNA polymerase II; Rpb2p [Saccharomyces
cerevisiae] >gi|2507349|sp|P08518|RPB2_YEAST DNA-DIRECTED
RNA POLYMERASE II 140 KD POLYPEPTIDE (B150) (RNA
POLYMERASE II SUBUNIT 2) >gi|82997|pir||A25884
DNA-directed RNA polymerase (EC 2.7.7.6) II 140K chain
[validated] - yeast (Saccharomyces cerevisiae)
>gi|1293711|gb|AAC49637.1| (U55020) Rpb2p polymerase
[Saccharomyces cerevisiae] >gi|1420379|emb|CAA99357.1|
(Z75059) ORF YOR151c [Saccharomyces cerevisiae]
Length = 1224
Score = 825 bits (2108), Expect = 0.0
Identities = 486/1201 (40%), Positives = 697/1201 (57%), Gaps = 107/1201 (8%)
Query: 9 VTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPD------------ 56
+T +D W V+ ++++EKGLV Q LDS+N F+D LQ+++ E + +
Sbjct: 25 ITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNI 84
Query: 57 IPDFEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYL-------------- 102
+E+ FGKI V +P E G LYP +AR+RNLTYS+ L++
Sbjct: 85 SRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPG 144
Query: 103 -----EMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFI 157
E+I + E +V IG LPIML+SK C L ++ +L +L E P D GGYFI
Sbjct: 145 RELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFI 204
Query: 158 INGSERVIVSIEDIAPNRTLVEKDERQE--KYIAKVFS-YRHGYRALVTVERKKDG---- 210
INGSE+V+++ E A N V K ++A++ S G R + T++ K G
Sbjct: 205 INGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGS 264
Query: 211 ---ILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVG---NDPEVQQILFDNLEDASDI 264
+ +P + + + V + RALG+ D +I++ + ND ++ ++L +ED I
Sbjct: 265 SARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVI 324
Query: 265 TTQQEALEYIGKL-VAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALK 323
++ AL++IG+ A G +E R++ A+ ++ LPHI RKA++LG M +
Sbjct: 325 QDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINR 384
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
++ +L ++D+DD+DH+ KRL LAG LL LF+ F +L KDI M +T +
Sbjct: 385 LLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEA----- 439
Query: 384 FGNIHRF-IRNSIRPDVLTERIEHALATGAWP------GGRTGVSQLLDRTNYVSTLSHL 436
H F ++ +I +T +++ALATG W R GVSQ+L+R Y STLSHL
Sbjct: 440 ----HDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHL 495
Query: 437 RRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVK 496
RR +P+ R+ + R LH THWG +CP ETPEG CGLVKNL+LM+ I+ +
Sbjct: 496 RRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPII 555
Query: 497 EYLMSLGIVPIE--VRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINV 554
+L G+ P+E V SP+ RV++NGV G + L+E ++ RR G I+ +++
Sbjct: 556 TFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSM 615
Query: 555 AYYEDVREVYVNSDDGRVRRPLIIVENGKP------KLTKEHV--------QAIKEG--- 597
+E+ + +D GRV RPL IVE+ + K+ K H+ Q I+ G
Sbjct: 616 IRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFED 675
Query: 598 --RLKWSDLVRMGVIEYLDAEEEENAYVAMWPW-----EVTEEH---------------- 634
WS L+ G++EY+DAEEEE+ +AM P E EE+
Sbjct: 676 VEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHA 735
Query: 635 ---THLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHL 691
TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ N+ +R+DT ++
Sbjct: 736 TTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANI 795
Query: 692 LHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTF 751
L+YPQ PL +R M+ + + + PAGQN +VA+ Y GYN ED++I+N++SI+RGL RS F
Sbjct: 796 LYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLF 855
Query: 752 FRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRT 811
FR+Y +EKKY T+ FE P T Y LD+DGLI P +V G+DV+IG+T
Sbjct: 856 FRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKT 915
Query: 812 SPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPE 871
+P EE + +R+ S +R +E G+VD+V++T DG K VKV VR +IP+
Sbjct: 916 TPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQ 975
Query: 872 IGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVA 931
IGDKFASRHGQKG IG+ +EDMP+T GIVPDLI+NPH IPSRMTV L+E + KVA
Sbjct: 976 IGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVA 1035
Query: 932 ALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRL 991
AL G D + F E + K L E G++ G E+MY+G TGK+ A IF G YYQRL
Sbjct: 1036 ALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRL 1095
Query: 992 HHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEES 1051
HMV DKIHAR+RGP+QVLT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL+E S
Sbjct: 1096 RHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEAS 1155
Query: 1052 DKTEVWVCENCGHIALEDKRRHKVY-CPVCGEEERISKVEMSYAFKLLLDELKAMVIRPK 1110
D V +C CG + + K H + C C + I ++ + YA KLL EL AM I P+
Sbjct: 1156 DAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPR 1215
Query: 1111 L 1111
L
Sbjct: 1216 L 1216
>sp|P08266|RPB2_DROME DNA-DIRECTED RNA POLYMERASE II 140 KD POLYPEPTIDE (RNA POLYMERASE II
SUBUNIT 2)
Length = 1123
Score = 821 bits (2097), Expect = 0.0
Identities = 460/1105 (41%), Positives = 670/1105 (60%), Gaps = 59/1105 (5%)
Query: 58 PDFEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVE 117
P F +KF +I + +P E G P+ P +AR+RNLTYSAPLY+++ +PVE
Sbjct: 30 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVE 89
Query: 118 VR-----IGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIA 172
+ IG++PIML+S C L L+D +L +L E P DPGGYFIINGSE+V+++ E +A
Sbjct: 90 TQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 149
Query: 173 PNRTLVEKDERQEKYIAKV---FSYRHGYRALVTV----------ERKKDGI---LYVGI 216
N T+ + KY K H R T+ KK I + +
Sbjct: 150 TN-TVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAIL 208
Query: 217 PNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALEY 273
P + + + + V RALG D+DI++ + +DPE+ +++ +L++A + Q AL +
Sbjct: 209 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 268
Query: 274 IGKLVA-PGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKR 332
IG A PG ++ R+K A+ ++ +LPH+GVS +KAY+LG M +++ SLG+R
Sbjct: 269 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 328
Query: 333 DEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIR 392
+ DD+DHY NKRL LAG LL LFR F L+K+++ T+ + RG+ + +
Sbjct: 329 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVR-MYTQKFIDRGKDFN-------LE 380
Query: 393 NSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTLSHLRRVTSPLDRE 446
+I+ +++T+ + ++LATG W R GVSQ+L+R + STLSHLRRV SP+ R+
Sbjct: 381 LAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 440
Query: 447 QPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVP 506
+ R LH T WG +CP ETPEG GLVKNLALMA I+ + E+L +
Sbjct: 441 GKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 500
Query: 507 IEVRRPSP--ELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVR--E 562
+E PS + ++++NG +G D + L+ ++K RR I + V+ D+R E
Sbjct: 501 LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDII-VSEVSMIRDIRDRE 559
Query: 563 VYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLK---WSDLVRMGVIEYLDAEEEE 619
+ + +D GR+ RPL+IVENG L K HV+ +KE K W LV GV+EY+ EEE
Sbjct: 560 IRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYKNYSWQVLVASGVVEYMYTLEEE 619
Query: 620 NAYVAMWPWEVTEE--------HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAK 671
+AM P+++ ++ +TH E+ PA ILG+ AS+IP+P+HN +PRNTY + M K
Sbjct: 620 TVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGK 679
Query: 672 QSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNM 731
Q++G+ NF +R+DT H+L+YP PLV +R M+ + + + PAG N +VA+L Y GYN
Sbjct: 680 QAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQ 739
Query: 732 EDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSP-TVRGYRGEKYYRHLD 790
ED++I+N +++ERG RS F+R+Y+ E K +G Q + FE P T +G R +Y LD
Sbjct: 740 EDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNA-HYDKLD 798
Query: 791 EDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVII 850
+DG+I P +V G DV+IG+T ++ +R+ S +R SE G+VD+V++
Sbjct: 799 DDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVML 858
Query: 851 TETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNP 910
T +G K K+ VR +RIP+IGDKFASRHGQKG G+ QEDM +T G+ PD+I+NP
Sbjct: 859 TLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINP 918
Query: 911 HGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE-EKLRKELEELGFKHTGREIMY 969
H IPSRMT+G L+E + GK+ + KG D T F +K+ L+E G+ G E+MY
Sbjct: 919 HAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMY 978
Query: 970 DGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEM 1029
+G TG++ A +F+G YYQRL HMV DKIH+R+RGPVQ+L +QP EGRAR+GGLRFGEM
Sbjct: 979 NGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEM 1038
Query: 1030 ERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKV 1089
ERD + HGAA L ERL E SD V +C CG IA+ + R + C C + +IS+V
Sbjct: 1039 ERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQV 1098
Query: 1090 EMSYAFKLLLDELKAMVIRPKLNLT 1114
+ YA KLL EL +M I P+L +T
Sbjct: 1099 RLPYAAKLLFQELMSMNIAPRLMVT 1123
>emb|CAA29180.2| (X05709) RNA polymerase [Drosophila melanogaster]
Length = 1123
Score = 820 bits (2096), Expect = 0.0
Identities = 459/1105 (41%), Positives = 669/1105 (60%), Gaps = 59/1105 (5%)
Query: 58 PDFEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVE 117
P F +KF +I + +P E G P+ P +AR+RNLTYSAPLY+++ +PVE
Sbjct: 30 PRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVE 89
Query: 118 VR-----IGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIA 172
+ IG++PIML+S C L L+D +L +L E P DPGGYFIINGSE+V+++ E +A
Sbjct: 90 TQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 149
Query: 173 PNRTLVEKDERQEKYIAKV---FSYRHGYRALVTV----------ERKKDGI---LYVGI 216
N T+ + KY K H R T+ KK I + +
Sbjct: 150 TN-TVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAIL 208
Query: 217 PNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALEY 273
P + + + + V RALG D+DI++ + +DPE+ +++ +L++A + Q AL +
Sbjct: 209 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 268
Query: 274 IGKLVA-PGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKR 332
IG A PG ++ R+K A+ ++ +LPH+GVS +KAY+LG M +++ SLG+R
Sbjct: 269 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 328
Query: 333 DEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIR 392
+ DD+DHY NKRL LAG LL LFR F L+K+++ T+ + RG+ + +
Sbjct: 329 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVR-MYTQKFIDRGKDFN-------LE 380
Query: 393 NSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTLSHLRRVTSPLDRE 446
+I+ +++T+ + ++LATG W R GVSQ+L+R + STLSHLRRV SP+ R+
Sbjct: 381 LAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 440
Query: 447 QPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVP 506
+ R LH T WG +CP ETPEG GLVKNLALMA I+ + E+L +
Sbjct: 441 GKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 500
Query: 507 IEVRRPSP--ELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVR--E 562
+E PS + ++++NG +G D + L+ ++K RR I + V+ D+R E
Sbjct: 501 LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDII-VSEVSMIRDIRDRE 559
Query: 563 VYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKE---GRLKWSDLVRMGVIEYLDAEEEE 619
+ + +D GR+ RPL+IVENG L K HV+ +KE W LV GV+EY+ EEE
Sbjct: 560 IRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYMYTLEEE 619
Query: 620 NAYVAMWPWEVTEE--------HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAK 671
+AM P+++ ++ +TH E+ PA ILG+ AS+IP+P+HN +PRNTY + M K
Sbjct: 620 TVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGK 679
Query: 672 QSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNM 731
Q++G+ NF +R+DT H+L+YP PLV +R M+ + + + PAG N +VA+L Y GYN
Sbjct: 680 QAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQ 739
Query: 732 EDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSP-TVRGYRGEKYYRHLD 790
ED++I+N +++ERG RS F+R+Y+ E K +G Q + FE P T +G R +Y LD
Sbjct: 740 EDSVILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNA-HYDKLD 798
Query: 791 EDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVII 850
+DG+I P +V G DV+IG+T ++ +R+ S +R SE G+VD+V++
Sbjct: 799 DDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVML 858
Query: 851 TETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNP 910
T +G K K+ VR +RIP+IGDKFASRHGQKG G+ QEDM +T G+ PD+I+NP
Sbjct: 859 TLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINP 918
Query: 911 HGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE-EKLRKELEELGFKHTGREIMY 969
H IPSRMT+G L+E + GK+ + KG D T F +K+ L+E G+ G E+MY
Sbjct: 919 HAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMY 978
Query: 970 DGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEM 1029
+G TG++ A +F+G YYQRL HMV DKIH+R+RGPVQ+L +QP EGRAR+GGLRFGEM
Sbjct: 979 NGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEM 1038
Query: 1030 ERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKV 1089
ERD + HGAA L ERL E SD V +C CG IA+ + R + C C + +IS+V
Sbjct: 1039 ERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQV 1098
Query: 1090 EMSYAFKLLLDELKAMVIRPKLNLT 1114
+ YA KLL EL +M I P+L +T
Sbjct: 1099 RLPYAAKLLFQELMSMNIAPRLMVT 1123
>gb|AAA68096.1| (M15693) RNA polymerase II 48 kd subunit [Saccharomyces cerevisiae]
Length = 1224
Score = 820 bits (2095), Expect = 0.0
Identities = 484/1201 (40%), Positives = 695/1201 (57%), Gaps = 107/1201 (8%)
Query: 9 VTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPD------------ 56
+T +D W V+ ++++EKGLV Q LDS+N F+D LQ+++ E + +
Sbjct: 25 ITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNI 84
Query: 57 IPDFEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYL-------------- 102
+E+ FGKI V +P E G LYP +AR+RNLTYS+ L++
Sbjct: 85 SRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPG 144
Query: 103 -----EMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFI 157
E+I + E +V IG LPIML+SK C L ++ +L +L E P D GGYFI
Sbjct: 145 RELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFI 204
Query: 158 INGSERVIVSIEDIAPNRTLVEKDERQE--KYIAKVFS-YRHGYRALVTVERKKDG---- 210
INGSE+V+++ E A N V K ++A++ S G R + T++ K G
Sbjct: 205 INGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGS 264
Query: 211 ---ILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVG---NDPEVQQILFDNLEDASDI 264
+ +P + + + V + RALG+ D +I++ + ND ++ ++L +ED I
Sbjct: 265 SARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVI 324
Query: 265 TTQQEALEYIGKL-VAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALK 323
++ AL++IG+ A G +E R++ A+ ++ LPHI RKA++LG M +
Sbjct: 325 QDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINR 384
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
++ +L ++D+DD+DH+ KRL LAG LL LF+ F +L KDI M +T +
Sbjct: 385 LLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEA----- 439
Query: 384 FGNIHRF-IRNSIRPDVLTERIEHALATGAWP------GGRTGVSQLLDRTNYVSTLSHL 436
H F ++ +I +T +++ALATG W R GVSQ+L+R Y STLSHL
Sbjct: 440 ----HDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHL 495
Query: 437 RRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVK 496
RR +P+ R+ + R LH THWG +CP ETPEG CGLVKNL+LM+ I+ +
Sbjct: 496 RRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPII 555
Query: 497 EYLMSLGIVPIE--VRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINV 554
+L G+ P+E V SP+ RV++NGV G + L+E ++ RR G I+ +++
Sbjct: 556 TFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSM 615
Query: 555 AYYEDVREVYVNSDDGRVRRPLIIVENGKP------KLTKEHV--------QAIKEG--- 597
+E+ + +D GRV RPL IVE+ + K+ K H+ Q I+ G
Sbjct: 616 IRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFED 675
Query: 598 --RLKWSDLVRMGVIEYLDAEEEENAYVAMWPW-----EVTEEH---------------- 634
WS L+ G++EY+DAEEEE+ +AM P E EE+
Sbjct: 676 VEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHA 735
Query: 635 ---THLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHL 691
TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ N+ +R+DT ++
Sbjct: 736 TTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANI 795
Query: 692 LHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTF 751
L+YPQ PL +R M+ + + + PAGQN +VA+ Y GYN ED++I+N++SI+RGL RS F
Sbjct: 796 LYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLF 855
Query: 752 FRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRT 811
FR+Y +EKKY T+ FE P T Y LD+DGLI P +V G+DV+IG+T
Sbjct: 856 FRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKT 915
Query: 812 SPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPE 871
+P EE + +R+ S +R +E G+VD+V++T DG K VKV VR +IP+
Sbjct: 916 TPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQ 975
Query: 872 IGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVA 931
IGDKFASRHGQKG IG+ +EDMP+T VPDLI+NPH IPSRMTV L+E + KVA
Sbjct: 976 IGDKFASRHGQKGTIGITYRREDMPFTRRRYVPDLIINPHAIPSRMTVAHLIECLLSKVA 1035
Query: 932 ALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRL 991
AL G D + F E + K L E G++ G E+MY+G TGK+ A IF G YYQRL
Sbjct: 1036 ALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRL 1095
Query: 992 HHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEES 1051
HMV DKIHAR+RGP+QVLT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL+E S
Sbjct: 1096 RHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEAS 1155
Query: 1052 DKTEVWVCENCGHIALEDKRRHKVY-CPVCGEEERISKVEMSYAFKLLLDELKAMVIRPK 1110
D V +C CG + + K H + C C + I ++ + YA KLL EL AM I P+
Sbjct: 1156 DAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPR 1215
Query: 1111 L 1111
L
Sbjct: 1216 L 1216
>gi|11499471 DNA-directed RNA polymerase, subunit B' (rpoB1) [Archaeoglobus
fulgidus] >gi|3122770|sp|O28392|RPB1_ARCFU DNA-DIRECTED
RNA POLYMERASE SUBUNIT B' >gi|7483289|pir||F69485
DNA-directed RNA polymerase, subunit B' (rpoB1) homolog -
Archaeoglobus fulgidus >gi|2648657|gb|AAB89366.1|
(AE000972) DNA-directed RNA polymerase, subunit B'
(rpoB1) [Archaeoglobus fulgidus]
Length = 604
Score = 820 bits (2094), Expect = 0.0
Identities = 389/599 (64%), Positives = 486/599 (80%)
Query: 518 RVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLI 577
RVY+NG ++G ++G+ L +I++ RR G+IS+ +NV YY D EV +N+D GR RRPLI
Sbjct: 5 RVYINGALVGFHDNGEELANKIRELRRKGRISNQVNVVYYPDSNEVRINTDAGRARRPLI 64
Query: 578 IVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHL 637
+V++GKP +T EH++ IK+G L DLVR G+IEYLDAEEEENAYVA++ E+T EHTHL
Sbjct: 65 VVKDGKPLVTPEHIEKIKKGELTIEDLVRQGLIEYLDAEEEENAYVAVYEHELTPEHTHL 124
Query: 638 ELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQI 697
EL P+ I+G+ IPY EHNA+PRNT GA M KQSLG+ ++N R DTRGHL+ +PQ+
Sbjct: 125 ELDPSLIVGICTGSIPYAEHNASPRNTMGAAMIKQSLGIPYSNLAWRTDTRGHLMQHPQV 184
Query: 698 PLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEA 757
P+V + + +++RPAGQNFVVAVL+Y GYN+EDA+I+NK S+ERGL RS F+RTYE+
Sbjct: 185 PIVTTDTQVEIKFDERPAGQNFVVAVLSYEGYNIEDALIMNKGSVERGLGRSFFYRTYES 244
Query: 758 EEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFL 817
EE +Y GGQ DKFEIP + G+RG + Y HLDEDGLIFPE++V DVLIGRTSPPRFL
Sbjct: 245 EEMRYPGGQEDKFEIPGADISGFRGAEAYAHLDEDGLIFPETEVGPDDVLIGRTSPPRFL 304
Query: 818 EERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFA 877
EE +S Q+RRETSV +R +E+GVVD V + ++ G+KL KV VRDLRIPE+GDKFA
Sbjct: 305 EEPTELGISPQKRRETSVTMRSNEKGVVDAVFLMQSEGGSKLAKVRVRDLRIPELGDKFA 364
Query: 878 SRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRR 937
SRHGQKGV+GL+VP+EDMP+TESGIVPDLI+NPH IPSRMTVG +LE IGGKV +L+GRR
Sbjct: 365 SRHGQKGVVGLLVPEEDMPFTESGIVPDLIINPHAIPSRMTVGHVLEMIGGKVGSLEGRR 424
Query: 938 VDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVAD 997
VDG+ F GE EE LR L++ GF HTG+E+MYDGITG+R+ DIFVGVIYYQ+L+HMV+
Sbjct: 425 VDGSLFHGESEEDLRATLKKYGFSHTGKEVMYDGITGRRYLVDIFVGVIYYQKLYHMVSS 484
Query: 998 KIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVW 1057
KIHARSRGPVQVLT+QPTEGRAR+GGLRFGEMERDVL+GHGAA+LL +RLLEESDK EVW
Sbjct: 485 KIHARSRGPVQVLTRQPTEGRARKGGLRFGEMERDVLIGHGAALLLKDRLLEESDKVEVW 544
Query: 1058 VCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
VC NCGH+A D RR+ YC +C +E I KVEMSYAFKLLLDELK+M+I P++ L ++
Sbjct: 545 VCGNCGHVATYDYRRNTAYCHICDDESNIHKVEMSYAFKLLLDELKSMMIAPRIILGDK 603
>sp|Q60181|RPB1_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT B' >gi|2127866|pir||H64429
DNA-directed RNA polymerase (EC 2.7.7.6) subunit B' -
Methanococcus jannaschii >gi|1591694|gb|AAB99044.1|
(U67546) DNA-directed RNA polymerase, subunit B' (rpoB1)
[Methanococcus jannaschii]
Length = 636
Score = 797 bits (2035), Expect = 0.0
Identities = 374/605 (61%), Positives = 483/605 (79%), Gaps = 6/605 (0%)
Query: 519 VYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLII 578
+Y+NG ++GT + + LV I++ RR G++ VAY E+ ++++N+D GR+ RPLI+
Sbjct: 11 IYVNGKLVGTTDKPEELVNFIREKRRKGELPQYTTVAYNEESNDIHINTDAGRIVRPLIV 70
Query: 579 VENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLE 638
VENGKPKLTKEH++ +K+G + +SDLV+ GVIEYLDAEEEENAY+A+ E+TE+HTHLE
Sbjct: 71 VENGKPKLTKEHIEKLKKGEITFSDLVKEGVIEYLDAEEEENAYIALSEEELTEKHTHLE 130
Query: 639 LMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIP 698
+ P ILG+ A + PYPEHN+APR T A M KQSLG+ +N + R+DTRGH LHYPQ+P
Sbjct: 131 IDPLTILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHYPQVP 190
Query: 699 LVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAE 758
+V ++ + +G++ RPAGQNFVVA+++Y GYNMEDAI+ NK++I+RGL RSTFFRTY+A
Sbjct: 191 IVRTKHQEILGFDKRPAGQNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRTYDAC 250
Query: 759 EKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLE 818
E++Y GGQ D+FEIP VRGYR E+ YR+L+EDG++ ES V+G DV++G+TSPPRFLE
Sbjct: 251 ERRYPGGQMDRFEIPDKGVRGYRSEECYRYLEEDGIVAVESHVKGGDVIVGKTSPPRFLE 310
Query: 819 ERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFAS 878
E + +RR++SV VR E G +DKVI+TET +G +LVKV VRDLRIPE+GDKFAS
Sbjct: 311 EHEITIQVKPQRRDSSVVVRHGEEGYIDKVILTETKEGNRLVKVKVRDLRIPELGDKFAS 370
Query: 879 RHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRV 938
RHGQKGV+GL VPQED+P+TESGIVPD+I+NPH IPSRMTVGQLLE +GGKV AL+GRR+
Sbjct: 371 RHGQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPSRMTVGQLLEMLGGKVGALEGRRI 430
Query: 939 DGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADK 998
DGT F GE E LRK LE LGFKH G+E+MYDG TGK+FE +I++G+ YYQ+LHH+VA K
Sbjct: 431 DGTIFSGEKEWDLRKALEALGFKHHGKEVMYDGKTGKKFEVEIYIGIAYYQKLHHLVAGK 490
Query: 999 IHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWV 1058
IHARSRGPVQVLT+QPTEGRAREGGLRFGEMERDVL+GHGAAMLL ERL++ESD ++ +
Sbjct: 491 IHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMLLKERLMDESDPYDICI 550
Query: 1059 CENCGHIALEDKRRHKVYCPVCGEEE------RISKVEMSYAFKLLLDELKAMVIRPKLN 1112
C CG A+ D +R YCP+CGE E +I V + YAFKLLLDELK+M I P++
Sbjct: 551 CSKCGDFAILDYKRGLKYCPICGEIENLYSSKKIPFVRIPYAFKLLLDELKSMCILPRIK 610
Query: 1113 LTERV 1117
+ ++V
Sbjct: 611 VRDKV 615
>pir||S70415 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain -
Euplotes octocarinatus >gi|2654279|emb|CAA47069.1|
(X66453) DNA-directed RNA polymerase [Euplotes
octocarinatus]
Length = 1194
Score = 783 bits (2000), Expect = 0.0
Identities = 448/1173 (38%), Positives = 676/1173 (57%), Gaps = 83/1173 (7%)
Query: 8 EVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFG--GIKPDIP------- 58
E+T +D W V+ +Y+ + GLV Q + S++ F+ +Q++V E I+P++
Sbjct: 31 EITQEDAWAVIRAYFDQHGLVSQQISSFDRFLSYTVQDIVTENNTISIQPELQFAPGSMN 90
Query: 59 ------DFEVKFGKIRVGE-PEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGI 111
+++ G++RV E P F+E + ++P +AR+RNLTY LY+E+ + +
Sbjct: 91 ESRENIKYDIILGQVRVNEKPRFKEFDDKYNVIFPNEARLRNLTYQTSLYVEVKKQDKVV 150
Query: 112 EQEPVEVRI----------GELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGS 161
EQ+ EV I G++P+M++S C L G+ + E ++ E D GGYFIING
Sbjct: 151 EQDGSEVIIDEQTEKEVYMGKVPVMVRSGFCSLNGIDESERWEMKECFHDQGGYFIINGG 210
Query: 162 ERVIVSIEDIAPNRTLVEKDERQEKY--IAKVFSY---------RHGYRALVTVERKKDG 210
E+VIV+ E +A N V ++ K+ +A+V S + + +R+ G
Sbjct: 211 EKVIVAHERMANNFVYVFHKKQPSKFSWVAEVRSQVDASNRPPNQFSIKMYSKGQRRAGG 270
Query: 211 ----------ILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDN 257
L IP + + + RAL DK+I+D + D + + + +
Sbjct: 271 SFSGGKIFGQTLCASIPYINADIPVAILFRALNCISDKEILDRICYDSTDSHMMEAMRAS 330
Query: 258 LEDASDITTQQEALEYIGKL-VAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYY 316
LE+ + TQ++AL YIG A G RE R++ A ++ + LPH+ +K+Y+
Sbjct: 331 LEEGTPFLTQEDALSYIGSRGTAGGVGREERIRHAREILKRHFLPHVSTKDSCESQKSYF 390
Query: 317 LGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQ 376
+G M +++ LG+ EDD+DHY KRL +AG LL LFR F + VK+ + K
Sbjct: 391 IGYMCHRLLNAHLGRIKEDDRDHYGKKRLDMAGSLLGMLFRNLFRRFVKEAGRYL-KAQA 449
Query: 377 RRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGG------RTGVSQLLDRTNYV 430
+G+ I + + D++++ +++ALATG W +TGVSQ+L+R +
Sbjct: 450 DKGDSLN-------ITKAFKKDIISDGLKYALATGNWGTNAAGEVSKTGVSQVLNRLTFA 502
Query: 431 STLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAV 490
STLSHLRR+ +PL + + R LH THWG +CP ETPEG CGLVKNL+LMA ++
Sbjct: 503 STLSHLRRLNTPLQKSGKLTKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAFVSVGS 562
Query: 491 PEEEVKEYLMSLGIVPIEVRRPSP--ELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKI 548
E ++E L + G + PS E +V++NG IG + + L+ IK RR+ I
Sbjct: 563 AAERLREILENYGTENLVSISPSDIHESTKVFVNGCWIGIHNESEDLINNIKLMRRALLI 622
Query: 549 SDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGR----LKWSDL 604
I++ REV +D GRV+RPL IV++ + L K HV +++ + + D
Sbjct: 623 PKEISIVRDIPNREVKFYTDHGRVQRPLFIVDDNRLILKKTHVVRLQDHERSDSMNFDDT 682
Query: 605 VRMGVIEYLDAEEEENAYVAMWPWEVTEE-----HTHLELMPAAILGLPASLIPYPEHNA 659
++ G++E+LD EEEE + +AM ++ +TH E+ P+ ILG+ AS+IP+P+HN
Sbjct: 683 LKEGLVEFLDVEEEETSMIAMNVGDLENRNYCSTYTHCEIHPSMILGVCASIIPFPDHNQ 742
Query: 660 APRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNF 719
+PRN Y + M KQ++G+ +N++IR+DT H+L+YPQ PLV +R + ++ P G +
Sbjct: 743 SPRNCYQSAMGKQAMGVYCSNYQIRMDTLAHVLYYPQKPLVVARSLDFPHVKELPPGCDS 802
Query: 720 VVAVLAYHGYNMEDAIIINKASIERGLARSTFFRT-YEAEEKKYLGGQTDKFEIPSPTVR 778
+VA+ Y GYN D++I+++A I+RG RS F++ +E + P TV
Sbjct: 803 IVAITCYTGYNQVDSVIMSQAPIDRGCFRSVFYKNIFEIPVRV-----ERLLRYPDSTVV 857
Query: 779 GYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVR 838
G R Y + LD DGLIFP V G D++IG+T+ PR L + + +++ S ++R
Sbjct: 858 GRRNGDYTK-LDIDGLIFPGKNVLGDDIIIGKTALPRNLFNDEMDDQTNLIKKDDSTSLR 916
Query: 839 PSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWT 898
SE+G++D VI+T +G KV +R +RIP+IGDKFASRHGQKG +G+ QED+P+T
Sbjct: 917 HSEKGIIDSVILTSNEEGDSFTKVKMRAIRIPQIGDKFASRHGQKGTVGMTYRQEDIPFT 976
Query: 899 ESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEEL 958
+ GI+PD+IVNPH IPSRMT+G L+E + KVA KG D T F E + +L L
Sbjct: 977 QEGIIPDIIVNPHAIPSRMTIGHLIECLASKVACFKGEEGDATPFQDVTVEHISNDLHRL 1036
Query: 959 GFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGR 1018
G++ G E+MYDG TG++ + IF+G YYQRL HMV DKIH+RSRGP+Q+LT+QPTEGR
Sbjct: 1037 GYQKRGNEVMYDGWTGRKMDTMIFLGPTYYQRLKHMVDDKIHSRSRGPLQILTRQPTEGR 1096
Query: 1019 AREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCP 1078
+R GGLRFGEMERD +V HGAA L ERL + SD V VC CG I + R+ K C
Sbjct: 1097 SRHGGLRFGEMERDCMVSHGAARFLKERLFDVSDCYTVHVCRICGLICEANLRQQKYLCR 1156
Query: 1079 VCGEEERISKVEMSYAFKLLLDELKAMVIRPKL 1111
C I +V + YA KLL EL AM I P++
Sbjct: 1157 GCQNSTNICQVGLPYACKLLFQELMAMQIAPRM 1189
>sp|O27124|RPB1_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT B' >gi|7482296|pir||F69006
DNA-directed RNA polymerase (EC 2.7.7.6) chain B' -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622149|gb|AAB85541.1| (AE000876) DNA-dependent RNA
polymerase, subunit B' [Methanobacterium
thermoautotrophicum]
Length = 603
Score = 781 bits (1996), Expect = 0.0
Identities = 368/599 (61%), Positives = 476/599 (79%), Gaps = 1/599 (0%)
Query: 518 RVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLI 577
++Y+NG +IGT E+ + VE ++K RRSG++S +N+ +Y + E+Y+ +D GR RRPLI
Sbjct: 5 KIYINGKLIGTCENPEEFVEEMRKKRRSGEVSPEMNITHYPENHEIYIFTDPGRARRPLI 64
Query: 578 IVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHL 637
IVE+G+P LT+EH++ ++ G + W DL+ G+IEYLDAEEEENAY+AM P E+ +EHTHL
Sbjct: 65 IVEDGEPLLTEEHLEKLETGEMSWDDLIAAGIIEYLDAEEEENAYIAMSPDEINDEHTHL 124
Query: 638 ELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQI 697
E+ P+ +LG+ A +IP+ HN++PRNT AGM KQ+LGL +N+ +R DTR HLLH+PQ+
Sbjct: 125 EIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYDLRTDTRAHLLHHPQV 184
Query: 698 PLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEA 757
P+V +RI+ GY++RP+GQNFVVAV++Y GYNMEDA+I+NKAS+ERGLARS+FFR+YEA
Sbjct: 185 PIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRSYEA 244
Query: 758 EEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFL 817
E++Y GGQ D+FEIP VRGYR E YRHLDEDG+I PE++V DVLIG+TSPPRFL
Sbjct: 245 AERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGDVLIGKTSPPRFL 304
Query: 818 EERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFA 877
EE + RRETSV VR E+G+VD V++TET +G++L K+ VR+ R PE+GDKFA
Sbjct: 305 EEIDEFGTVAERRRETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVREQRQPELGDKFA 364
Query: 878 SRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRR 937
SRHGQKGV+GLIV QEDMP+TE GIVPDLIVNPH IPSRM+VGQ+LE + GK A ++GRR
Sbjct: 365 SRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRMSVGQVLEMLAGKAACMEGRR 424
Query: 938 VDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVAD 997
VDGT F GE E+ +++ L GF+ G E +Y+GITG+R EA+IF+GV YYQ+LHHM D
Sbjct: 425 VDGTPFTGEDEDDIKEALRANGFETAGVESLYNGITGERIEAEIFIGVAYYQKLHHMTTD 484
Query: 998 KIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVW 1057
K++ARSRGPVQVLT+QPTEGRAREGGLRFGEMERD L+ HGAA+ L ERLL+ESDK E
Sbjct: 485 KVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEAL 544
Query: 1058 VCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
VC +CG IA+ DK R K YCP+C + E VE+SYAFKLLLDELK++ I PKL L ++
Sbjct: 545 VCADCGMIAVYDKIRDKKYCPICEDSESF-PVEVSYAFKLLLDELKSLCIFPKLILEDK 602
>sp|P09845|RPB1_METTW DNA-DIRECTED RNA POLYMERASE SUBUNIT B' >gi|80920|pir||S02195
DNA-directed RNA polymerase (EC 2.7.7.6) chain B' -
Methanobacterium thermoautotrophicum (strain Winter)
>gi|809726|emb|CAA30837.1| (X08038) RNA polymerase
subunit B' (AA 1-604) [Methanobacterium
thermoautotrophicum]
Length = 604
Score = 777 bits (1985), Expect = 0.0
Identities = 369/600 (61%), Positives = 474/600 (78%), Gaps = 2/600 (0%)
Query: 518 RVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLI 577
++Y+NG +IGT ++ + VE I+ RRSG++S +N+ +Y + E+Y+ +D GR RRPLI
Sbjct: 5 KIYINGKLIGTCDNPEEFVEEIRAKRRSGEVSHEMNITHYPENHEIYIFTDPGRARRPLI 64
Query: 578 IVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHL 637
IVE+G+P L +EH++ + G ++W DL+ G+IEYLDAEEEEN Y+AM P EVTEEHTHL
Sbjct: 65 IVEDGEPLLKEEHLEKLSSGEMEWDDLISQGIIEYLDAEEEENTYIAMSPEEVTEEHTHL 124
Query: 638 ELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQI 697
E+ P+ +LG+ A +IP+ HN++PRNT AGM KQ+LGL +N+ +R DTR HLLH+PQ+
Sbjct: 125 EIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYNLRTDTRAHLLHHPQV 184
Query: 698 PLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEA 757
P+V +RI+ GY++RP+GQNFVVAV++Y GYNMEDA+I+NKAS+ERGLARS+FFR+YEA
Sbjct: 185 PIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRSYEA 244
Query: 758 EEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFL 817
E++Y GGQ D+FEIP VRGYR E+ YRHLDEDG+I PE++V DVLIG+TSPPRFL
Sbjct: 245 TERRYPGGQEDRFEIPEKGVRGYRSERDYRHLDEDGIINPETEVSSGDVLIGKTSPPRFL 304
Query: 818 EERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPE-IGDKF 876
EE + RRETSV VR E G+VD V++TET +G++L K+ VR+ R PE IGDKF
Sbjct: 305 EEIDEFGTVAERRRETSVTVRHGEEGIVDAVLLTETVEGSRLAKIRVREQRQPEFIGDKF 364
Query: 877 ASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGR 936
ASRHGQKGV+GLIV QEDMP+TE G+VPDLIVNPH IPSRM+VGQ+LE + GK A ++GR
Sbjct: 365 ASRHGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPHAIPSRMSVGQVLEMLAGKAACMEGR 424
Query: 937 RVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVA 996
RVDGT F GE E+ L++ L+ GF+ G E +Y+GITG+R EA+IF+GV YYQ+LHHM
Sbjct: 425 RVDGTPFTGEEEKDLKEALKANGFESAGVETLYNGITGERIEAEIFIGVAYYQKLHHMTT 484
Query: 997 DKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEV 1056
D+I+ARSRGPVQVLT+QPTEGRAREGGLRFGEMERD L+ HGAA+ L ERLL+ESDK E
Sbjct: 485 DRIYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEA 544
Query: 1057 WVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
VC CG IA+ DK R K YCP+C + E VE+SYAFKLLLDELK++ I PKL L ++
Sbjct: 545 LVCAECGMIAIYDKIRDKKYCPICEDSESF-PVEISYAFKLLLDELKSLCIFPKLVLEDK 603
>sp|Q10233|RPC2_SCHPO PUTATIVE DNA-DIRECTED RNA POLYMERASE III 130 KD POLYPEPTIDE (RNA
POLYMERASE III SUBUNIT 2) >gi|7492544|pir||T38867
probable DNA-directed RNA polymerase III 130 kd subunit -
fission yeast (Schizosaccharomyces pombe)
>gi|1204209|emb|CAA93558.1| (Z69727) putative
dna-directed rna polymerase iii 130 kd polypeptide (ec
2.7.7.6) [Schizosaccharomyces pombe]
Length = 1165
Score = 771 bits (1968), Expect = 0.0
Identities = 442/1129 (39%), Positives = 667/1129 (58%), Gaps = 36/1129 (3%)
Query: 10 TPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDI-PDFEVKFGKIR 68
T +D W ++ ++ + KGLV+QHLDSYN F+D L+++V + D+ P F +K+ IR
Sbjct: 46 TIEDKWQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVTSDVEPWFYLKYLDIR 105
Query: 69 VGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQ-EPVEVRIGELPIML 127
VG P + + + P + R+R+LTY A +Y++ I RG + V IG +P+ML
Sbjct: 106 VGAPVRTDADAIQASISPHECRLRDLTYGANIYVD-IEYTRGKQVVRRRNVPIGRMPVML 164
Query: 128 KSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKY 187
+S C L G ++ E+ L E P DPGGYFI+ G+E+VI+ E ++ NR +VE + ++ +
Sbjct: 165 RSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRIIVEAEPKKGLW 224
Query: 188 IAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV-GN 246
A V S H R T K+G LY+ +V + V V++A+GL+ D++I + V G
Sbjct: 225 QASVTSSTHE-RKSKTYVITKNGKLYLKHNSVADDIPIVVVLKAMGLQSDQEIFELVAGA 283
Query: 247 DPEVQQILFDNLEDAS--DITTQQEALEYIGKLVAPGQ-AREYRL---KRAEYVIDNNLL 300
+ Q + ++E+ + +I T Q+ALEYIG V + A RL + A V+ +L
Sbjct: 284 EASYQDLFAPSIEECAKLNIYTAQQALEYIGARVKVNRRAGANRLPPHEEALEVLAAVVL 343
Query: 301 PHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAF 360
HI V + KA Y+G+MA +V+ + DD+D+ NKRL LAG LL LF F
Sbjct: 344 AHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLELAGQLLALLFEDLF 403
Query: 361 SQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWP-----G 415
+ D++ + K ++ F ++ ++ D +T+ + AL+TG W
Sbjct: 404 KKFNSDLKLNIDKVLKKPHRTQEFDAYNQL---TVHSDHITQGMVRALSTGNWSLKRFKM 460
Query: 416 GRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCG 475
R GV+ +L R +Y+S L + R+TS ++ + R L + +G +C ++TPEG CG
Sbjct: 461 ERAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACG 520
Query: 476 LVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEV----RRPSPELWRVYLNGVIIGTIED 531
LVKNLALM ITT EE + + + GI I V S + VYLNG I+G
Sbjct: 521 LVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISGRELHSHGTYLVYLNGAILGISRY 580
Query: 532 GKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHV 591
V +K RRSGKIS I + R V++++D GR+ RPLIIV+NG PK+ +H+
Sbjct: 581 PSLFVASFRKLRRSGKISPFIGIFINTHQRAVFISTDGGRICRPLIIVQNGLPKVESKHI 640
Query: 592 QAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASL 651
+ +KEG+ + D ++ G++EY+D EE ++ ++++ ++T + THLE+ P ILG A L
Sbjct: 641 RLLKEGKWGFEDFLKQGLVEYVDVNEENDSLISVYERDITPDTTHLEIEPFTILGAVAGL 700
Query: 652 IPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYE 711
IPYP HN +PRNTY M KQ++G N R+DT +L+ YPQ P+V ++ ++ +GY+
Sbjct: 701 IPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYD 760
Query: 712 DRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFE 771
PAGQN VA+++Y GY++EDA+++NK+SI+RG R F + +KY G D+
Sbjct: 761 KLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDR-- 818
Query: 772 IPSPTVRGYRGEKYYRH--LDEDGLIFPESKVEGKDVLIGRTSPPRFLEER-GLGAVSLQ 828
I P GE ++H +++DGL +V+ + + + +P L+ LG
Sbjct: 819 IGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTV 878
Query: 829 ER--RETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVI 886
E + T + + E G +DKV++T T L+KV +R R PE+GDKF+SRHGQKGV
Sbjct: 879 ESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDKFSSRHGQKGVC 938
Query: 887 GLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGE 946
G+IV QEDMP+ + GI PD+I+NPHG PSRMTVG+++E + GKV L+G GT F G
Sbjct: 939 GVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCFGGT 998
Query: 947 PEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGP 1006
E + L E G+ ++G++++ GITG+ EA IF+G IYYQ+L HMV DK+HAR+RGP
Sbjct: 999 KVEDASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGP 1058
Query: 1007 VQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIA 1066
VLT+QPTEGR+R+GGLR GEMERD L+ +GA+ LL+ERL+ SD +V VC CG +
Sbjct: 1059 RAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDACDVDVCGQCGLLG 1118
Query: 1067 LEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTE 1115
+K +C C + K+ + YA KLL EL +M I P+L L +
Sbjct: 1119 ------YKGWCNSCQSTREVVKMTIPYAAKLLFQELLSMNIVPRLALED 1161
>sp|P15351|RPB1_HALHA DNA-DIRECTED RNA POLYMERASE SUBUNIT B' >gi|81035|pir||S03573
DNA-directed RNA polymerase (EC 2.7.7.6) chain B' -
Halobacterium salinarum >gi|43541|emb|CAA40425.1|
(X57144) RNA polymerase subunit B' [Halobacterium
halobium] >gi|10582044|gb|AAG20693.1| (AE005138)
DNA-directed RNA polymerase subunit B'; RpoB'
[Halobacterium sp. NRC-1]
Length = 608
Score = 762 bits (1946), Expect = 0.0
Identities = 358/601 (59%), Positives = 474/601 (78%), Gaps = 1/601 (0%)
Query: 518 RVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLI 577
+VY+NG ++GT E+ + L E+I++ RR G++S+++NV+ + EV VN+D GR RRPL+
Sbjct: 8 KVYVNGSLVGTHENPEELAEQIREARRRGEVSEMVNVSVRDRTGEVIVNADAGRARRPLL 67
Query: 578 IVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHL 637
+VENG+P +T+E V+A+K G + + DLV G +E++DAEEEE+ V + E+T +HTHL
Sbjct: 68 VVENGEPVVTQEEVEAVKNGDIDFEDLVEAGKVEFIDAEEEEDILVGVEEEELTTDHTHL 127
Query: 638 ELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQI 697
E+ P I G+ A +IPYPEHNA+PR T GAGM KQSLGL AN+RIR DTR HLLHYPQ
Sbjct: 128 EIDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQHLLHYPQK 187
Query: 698 PLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEA 757
+VN++ + +GY+DRPAGQNFVVAV++Y G+N+EDA+++NK S+ER L+RS FFRTYE
Sbjct: 188 AMVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSRSHFFRTYEG 247
Query: 758 EEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFL 817
EE++Y GGQ D+FEIP VRG RGE Y HLD+DGL+ PE+KV+ VL+G+TSPPRFL
Sbjct: 248 EERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETKVDDSSVLLGKTSPPRFL 307
Query: 818 EE-RGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKF 876
EE +G +S Q+RRETSV +R E GVVD V + E DG+KL KV+VRD RIPE+GDKF
Sbjct: 308 EEPEDMGGLSPQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDERIPELGDKF 367
Query: 877 ASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGR 936
ASRHGQKGV+G + PQEDMP+T+ G+VPDL++NPH +PSRMTVG +LE +GGK +L GR
Sbjct: 368 ASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKAGSLDGR 427
Query: 937 RVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVA 996
VDGT F GE E+++R LE+ GFK +G+E+MY G++G++ EA+IFVG I+Y +L+HMV+
Sbjct: 428 SVDGTPFTGEGEDEIRGTLEDRGFKSSGKEVMYSGVSGEKIEAEIFVGTIFYHKLYHMVS 487
Query: 997 DKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEV 1056
+K+HARS+GPVQVLT+QPTEGRAREGGLR GEMERD ++GHGAAM+L ERLL+ SD+ E+
Sbjct: 488 NKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGAAMVLKERLLDSSDREEI 547
Query: 1057 WVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
VC NCG A+E+ + +VYCP C EE + +EMSYAFKLLLDE+KA+ I P+L L E
Sbjct: 548 HVCGNCGMTAVENYEQRRVYCPNCEEETDVHSIEMSYAFKLLLDEMKALGIAPRLELEEA 607
Query: 1117 V 1117
V
Sbjct: 608 V 608
>gb|AAB59324.1| (M38723) RNA polymerase III [Saccharomyces cerevisiae]
Length = 1149
Score = 760 bits (1942), Expect = 0.0
Identities = 438/1128 (38%), Positives = 661/1128 (57%), Gaps = 44/1128 (3%)
Query: 10 TPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDI-PDFEVKFGKIR 68
T D W ++ ++ + KGLV+QHLDS+N F+D L++++ I D+ P+F +K+ IR
Sbjct: 40 TAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIR 99
Query: 69 VGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRG---IEQEPVEVRIGELPI 125
VG+ P P + R+R++TYSAP+Y++ I RG I + VE IG +PI
Sbjct: 100 VGKKSSSSTKDYLTP--PHECRLRDMTYSAPIYVD-IEYTRGRNIIMHKDVE--IGRMPI 154
Query: 126 MLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQE 185
ML+S C LY + ++ +L E P DPGGYFI+NG+E+VI+ E ++ NR +VE DE++
Sbjct: 155 MLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKEG 214
Query: 186 KYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV- 244
A V S H R T K+G +Y+ ++ + + V++A G+ D +I+ V
Sbjct: 215 IVQASVTSSTHE-RKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSDLEIMQLVC 273
Query: 245 GNDPEVQQILFDNLEDAS--DITTQQEALEYIGKLVAPGQAREYR-LKRAEYVIDNNLLP 301
GND Q I NLE++S DI TQQ+ALEYIG V + ++ L+ I ++
Sbjct: 274 GNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQEGIEAIATTVIA 333
Query: 302 HIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFS 361
H+ V D KA Y+ MM +V+ + DD+D+ NKRL LAG L+ LF F
Sbjct: 334 HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFK 393
Query: 362 QLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWP-----GG 416
+ D + + K ++ + + + ++ + +T + A++TG W
Sbjct: 394 KFNNDFKLSIDKVLKKPNRAMEYDAL---LSINVHSNNITSGLNRAISTGNWSLKRFKME 450
Query: 417 RTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGL 476
R GV+ +L R +Y+S L + R++S ++ + R L + +G +C +TPEG CGL
Sbjct: 451 RAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGL 510
Query: 477 VKNLALMAQITTAVPEEEVKEYLMSLGIVPIE-VRRPSPEL-WRVYLNGVIIGTIEDGKA 534
VKNLALM ITT EE +K+ LG+ I + S L + VYLNG +IG+I
Sbjct: 511 VKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSASLHLNYGVYLNGTLIGSIRFPTK 570
Query: 535 LVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAI 594
V + + RR+GK+S+ I++ V++ +D GR+ RPLIIV +G+ ++ H++ +
Sbjct: 571 FVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKL 630
Query: 595 KEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPY 654
+G L + D +++G++EYLD EE ++Y+A++ ++ THLE+ P ILG A LIPY
Sbjct: 631 LDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPY 690
Query: 655 PEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRP 714
P HN +PRNTY M KQ++G N R+DT +L+ YPQ P+V ++ ++ + Y+ P
Sbjct: 691 PHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLP 750
Query: 715 AGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPS 774
AGQN VAV++Y GY++EDA+++NK+SI+RG R R K+Y D
Sbjct: 751 AGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQD------ 804
Query: 775 PTVRGYR----GEKYYRH--LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQ 828
+ G R G+ ++H L DGL KV+ + I ++ P + V++Q
Sbjct: 805 -IIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQ 863
Query: 829 ER-RETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIG 887
+ RE V R E +D+V+++ + + L+KV +R R PE+GDKF+SRHGQKGV G
Sbjct: 864 TQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923
Query: 888 LIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEP 947
+IV QEDMP+ + GIVPD+I+NPHG PSRMTVG+++E I GK L G GT F G
Sbjct: 924 IIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSK 983
Query: 948 EEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPV 1007
E + K L + GF ++G++++Y GITG+ +A IF G IYYQ+L HMV DK+HAR+RGP
Sbjct: 984 LEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1043
Query: 1008 QVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAL 1067
VLT+QPTEGR+R+GGLR GEMERD ++ +GA+ LL+ERL+ SD EV VC+ CG +
Sbjct: 1044 AVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMG- 1102
Query: 1068 EDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTE 1115
+ +C C E I K+ + YA KLL EL +M I P+L L +
Sbjct: 1103 -----YSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLED 1145
>gi|6324781 second-largest subunit of RNA polymerase III; Ret1p [Saccharomyces
cerevisiae] >gi|2507350|sp|P22276|RPC2_YEAST DNA-DIRECTED
RNA POLYMERASE III 130 KD POLYPEPTIDE (C128) (RNA
POLYMERASE III SUBUNIT 2) >gi|2117916|pir||S67099
DNA-directed RNA polymerase (EC 2.7.7.6) III
second-largest chain - yeast (Saccharomyces cerevisiae)
>gi|1420485|emb|CAA99422.1| (Z75115) ORF YOR207c
[Saccharomyces cerevisiae]
Length = 1149
Score = 760 bits (1941), Expect = 0.0
Identities = 438/1128 (38%), Positives = 661/1128 (57%), Gaps = 44/1128 (3%)
Query: 10 TPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDI-PDFEVKFGKIR 68
T D W ++ ++ + KGLV+QHLDS+N F+D L++++ I D+ P+F +K+ IR
Sbjct: 40 TAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIR 99
Query: 69 VGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRG---IEQEPVEVRIGELPI 125
VG+ P P + R+R++TYSAP+Y++ I RG I + VE IG +PI
Sbjct: 100 VGKKSSSSTKDYLTP--PHECRLRDMTYSAPIYVD-IEYTRGRNIIMHKDVE--IGRMPI 154
Query: 126 MLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQE 185
ML+S C LY + ++ +L E P DPGGYFI+NG+E+VI+ E ++ NR +VE DE++
Sbjct: 155 MLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKG 214
Query: 186 KYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV- 244
A V S H R T K+G +Y+ ++ + + V++A G+ D +I+ V
Sbjct: 215 IVQASVTSSTHE-RKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSDLEIMQLVC 273
Query: 245 GNDPEVQQILFDNLEDAS--DITTQQEALEYIGKLVAPGQAREYR-LKRAEYVIDNNLLP 301
GND Q I NLE++S DI TQQ+ALEYIG V + ++ L+ I ++
Sbjct: 274 GNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQEGIEAIATTVIA 333
Query: 302 HIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFS 361
H+ V D KA Y+ MM +V+ + DD+D+ NKRL LAG L+ LF F
Sbjct: 334 HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFK 393
Query: 362 QLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWP-----GG 416
+ D + + K ++ + + + ++ + +T + A++TG W
Sbjct: 394 KFNNDFKLSIDKVLKKPNRAMEYDAL---LSINVHSNNITSGLNRAISTGNWSLKRFKME 450
Query: 417 RTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGL 476
R GV+ +L R +Y+S L + R++S ++ + R L + +G +C +TPEG CGL
Sbjct: 451 RAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGL 510
Query: 477 VKNLALMAQITTAVPEEEVKEYLMSLGIVPIE-VRRPSPEL-WRVYLNGVIIGTIEDGKA 534
VKNLALM ITT EE +K+ LG+ I + S L + VYLNG +IG+I
Sbjct: 511 VKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSASLHLNYGVYLNGTLIGSIRFPTK 570
Query: 535 LVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAI 594
V + + RR+GK+S+ I++ V++ +D GR+ RPLIIV +G+ ++ H++ +
Sbjct: 571 FVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKL 630
Query: 595 KEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPY 654
+G L + D +++G++EYLD EE ++Y+A++ ++ THLE+ P ILG A LIPY
Sbjct: 631 LDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPY 690
Query: 655 PEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRP 714
P HN +PRNTY M KQ++G N R+DT +L+ YPQ P+V ++ ++ + Y+ P
Sbjct: 691 PHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLP 750
Query: 715 AGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPS 774
AGQN VAV++Y GY++EDA+++NK+SI+RG R R K+Y D
Sbjct: 751 AGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQD------ 804
Query: 775 PTVRGYR----GEKYYRH--LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQ 828
+ G R G+ ++H L DGL KV+ + I ++ P + V++Q
Sbjct: 805 -IIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQ 863
Query: 829 ER-RETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIG 887
+ RE V R E +D+V+++ + + L+KV +R R PE+GDKF+SRHGQKGV G
Sbjct: 864 TQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 923
Query: 888 LIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEP 947
+IV QEDMP+ + GIVPD+I+NPHG PSRMTVG+++E I GK L G GT F G
Sbjct: 924 IIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCFGGSK 983
Query: 948 EEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPV 1007
E + K L + GF ++G++++Y GITG+ +A IF G IYYQ+L HMV DK+HAR+RGP
Sbjct: 984 LEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1043
Query: 1008 QVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAL 1067
VLT+QPTEGR+R+GGLR GEMERD ++ +GA+ LL+ERL+ SD EV VC+ CG +
Sbjct: 1044 AVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKCGLMG- 1102
Query: 1068 EDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTE 1115
+ +C C E I K+ + YA KLL EL +M I P+L L +
Sbjct: 1103 -----YSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLED 1145
>sp|P41557|RPB1_METVA DNA-DIRECTED RNA POLYMERASE SUBUNIT B' >gi|629375|pir||S47161
DNA-directed RNA polymerase (EC 2.7.7.6) - Methanococcus
vannielii >gi|581388|emb|CAA51727.1| (X73293)
DNA-directed RNA polymerase [Methanococcus vannielii]
Length = 614
Score = 756 bits (1932), Expect = 0.0
Identities = 367/604 (60%), Positives = 470/604 (77%), Gaps = 6/604 (0%)
Query: 519 VYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLII 578
VY+NG +I T +D + LV+ ++ RRSGK+S ++++ E+ ++++++D GR RPL++
Sbjct: 10 VYVNGKLIDTSKDPENLVKSLRIQRRSGKLSPNTSISFNEESNDIHISTDGGRAVRPLVV 69
Query: 579 VENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLE 638
VENG KLT E ++ + L + LV+ GVIE+LDAEEEENA +AM+ E+T E+TH+E
Sbjct: 70 VENGFSKLTNELLEKVNNNELTFEYLVKTGVIEFLDAEEEENARIAMYNDEITFENTHVE 129
Query: 639 LMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIP 698
+ P ILG+ A + PYPEHN+APR T A M KQSLG+ AN + R+DTRGHLLHYPQ+P
Sbjct: 130 IDPLVILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMANIKWRMDTRGHLLHYPQVP 189
Query: 699 LVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAE 758
LV ++ + +G++ RPAGQNFVVAV++Y GYNMEDA +INKAS+ERGL RSTFFR+YE+
Sbjct: 190 LVRTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFVINKASLERGLGRSTFFRSYESF 249
Query: 759 EKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLE 818
EK+Y GGQ DKFE+P VRGYR E+ YR+L +DGLI ES+V DV++G+TSPPRFLE
Sbjct: 250 EKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLE 309
Query: 819 ERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFAS 878
E+ + + +RR+TSV +R E GVVD VI++ET +G +L KV VRDLR+PE GDKFAS
Sbjct: 310 EQEITLQTKSQRRDTSVTIRHGEEGVVDLVILSETKEGNRLGKVRVRDLRVPEFGDKFAS 369
Query: 879 RHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRV 938
RHGQKGVIGL+VPQED+P+TE G++PDLI+NPH IPSRMT+GQ+LE IGGKV +L+ RRV
Sbjct: 370 RHGQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGSLECRRV 429
Query: 939 DGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADK 998
DGT F GE E LR LE GF H+G+E MYDG TG++ E +IFVGV YYQ+LHH+VA K
Sbjct: 430 DGTIFSGEGEWALRHALENYGFTHSGKETMYDGKTGRKLECEIFVGVAYYQKLHHLVAGK 489
Query: 999 IHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWV 1058
IHARSRGP+QVLT+QPTEGRAREGGLRFGEMERDVLV HGAA+LL ERLL+ESD E +V
Sbjct: 490 IHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAALLLKERLLDESDPHEDYV 549
Query: 1059 CENCGHIALEDKRRHKVYCPVCGEEE------RISKVEMSYAFKLLLDELKAMVIRPKLN 1112
C CG IA+ D +R +CPVCGE E +I V+++YAFKLLLDELK+M I PKL
Sbjct: 550 CAKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKLK 609
Query: 1113 LTER 1116
L +R
Sbjct: 610 LKDR 613
>pir||T16011 hypothetical protein F09F7.3 - Caenorhabditis elegans
>gi|485110|gb|AAA50695.1| (U00050) similarity across
entire gene to DNA-directed RNA polymerase
[Caenorhabditis elegans]
Length = 1207
Score = 745 bits (1902), Expect = 0.0
Identities = 427/1143 (37%), Positives = 668/1143 (58%), Gaps = 60/1143 (5%)
Query: 12 DDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDI-PDFEVKFGKIRVG 70
+D W+++ ++ + +GLV+QHL S++ F+ ++ ++ I D P+F +K+ IR+G
Sbjct: 79 EDKWLLVPAFLKVRGLVKQHLVSFDHFVQEEIRSIMLSNQKITSDANPNFYLKYLDIRIG 138
Query: 71 EPEFQEPHGQ-RKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQE-PVEVRIGELPIMLK 128
+P +E + P + R+R++TYSAP+ ++ I RG ++ ++ IG +PIML+
Sbjct: 139 KPSSEEGLNMTHDKITPQECRLRDMTYSAPISVD-IEYTRGNQRVFKKDLIIGRMPIMLR 197
Query: 129 SKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYI 188
S C L L+++EL ++ E P DPGGYF++ GSE+VI+ E ++ NR +V ++ +E
Sbjct: 198 SSKCILRDLAEEELARVQECPYDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKELQ- 256
Query: 189 AKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDP 248
+V S ++ V KK G V + V + +A+G+E D DIV +G++
Sbjct: 257 CEVLSSTSERKSKTYVTMKK-GKYSVRHNQLTDDVPVSIIFKAMGVESDFDIVSTIGHEE 315
Query: 249 EVQQILFDNLEDA--SDITTQQEALEYIGKLVA----------PGQAREYRLKRAEY--- 293
+ LE++ + + TQQ+AL Y+ V PG + E+
Sbjct: 316 KYVSAFAQTLEESINAGVYTQQQALAYVTSKVKARKFTPFGSLPGTSVSVLTPPKEHEAV 375
Query: 294 -VIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLL 352
+ N+++ HI + KA YLG+M ++I+ LG+ DD+D Y NKRL LAG LL
Sbjct: 376 DFLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQTELGENGLDDRDFYGNKRLELAGSLL 435
Query: 353 KDLFRVAF----SQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHAL 408
LF F S+L + + KT + I +R D++T I +A+
Sbjct: 436 SLLFEDVFKRFNSELKRIADNALMKTMAAPLD----------IVKHMRQDMITNTIVNAM 485
Query: 409 ATGAW-----PGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRI 463
+TG W R GV+Q+L R +Y+S L + R+ S ++ + R L + WG +
Sbjct: 486 STGNWIIKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGML 545
Query: 464 CPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPS----PELWRV 519
CP++TPEG CGLVKNLAL++ ITT E+ V L++ G+ + S PE +
Sbjct: 546 CPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLI 605
Query: 520 YLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIV 579
+LNGV+IGT D + +V+ ++ RRSG +S+ ++V+ R V+++SD GR+ RP IIV
Sbjct: 606 FLNGVLIGTAVDPERVVKAVRDLRRSGLLSEFVSVSRSLTNRSVFISSDGGRLCRPYIIV 665
Query: 580 ENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLEL 639
+NG P LT+ HVQ +KEG++ + D V G++EYLD E +A +A++ E+ E THLE+
Sbjct: 666 KNGTPMLTQAHVQELKEGKMIFEDFVDDGIVEYLDVNEMNDALIAVYGREIGPETTHLEI 725
Query: 640 MPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPL 699
P +LG+ A LIPYP HN +PRNTY M KQ++G N + R+D+ +LL YPQ PL
Sbjct: 726 EPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPL 785
Query: 700 VNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEE 759
V S+ ++ +E PAG N ++AV++Y GY++EDA+++NKAS++RG R ++ +
Sbjct: 786 VKSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTA 845
Query: 760 KKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLI--------GRT 811
KKY D+ P+ + +++LD++G++F +++ K +I G +
Sbjct: 846 KKYPNQTFDRLLGPALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGES 905
Query: 812 SPPRFLEERGLGAVSLQ-ERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIP 870
P +G Q + ++ S+ + ++V++T D L KV +R R P
Sbjct: 906 GPGASASANTIGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRP 965
Query: 871 EIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKV 930
E+GDKF+SRHGQKGV GLI QEDMP+ + G+VPD+I+NPHG PSRMTVG+L+E + GK
Sbjct: 966 ELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKA 1025
Query: 931 AALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQR 990
+ G GTAF G+ + + +EL G+ + G++++ GITG+ A I+ G IYYQ+
Sbjct: 1026 GVVNGTYHYGTAFGGDQVKDVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQK 1085
Query: 991 LHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEE 1050
L HMV DK+HAR+RGP LT+QPTEGR+REGGLR GEMERD L+ +GA+MLLIERL+
Sbjct: 1086 LKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVS 1145
Query: 1051 SDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPK 1110
SD+ +V VC CG I K +C C + ++ +++ YA KLL EL++M I P+
Sbjct: 1146 SDEFKVDVCTGCGVIG------SKGWCQKCRSSKSMANIKIPYACKLLFQELQSMNIVPR 1199
Query: 1111 LNL 1113
L+L
Sbjct: 1200 LDL 1202
>pir||T49421 probable DNA-directed RNA polymerase III second-largest chain
[imported] - Neurospora crassa
>gi|7800864|emb|CAB91222.1| (AL355926) probable
DNA-directed RNA polymerase III second-largest chain
[Neurospora crassa]
Length = 1155
Score = 735 bits (1878), Expect = 0.0
Identities = 429/1144 (37%), Positives = 649/1144 (56%), Gaps = 59/1144 (5%)
Query: 10 TPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDI-PDFEVKFGKIR 68
T D + ++ ++ + KGLV+QH+DSYN F++ ++++V ++ D P+F ++F IR
Sbjct: 27 TTQDKFHLVPAFLKVKGLVKQHIDSYNYFVNEEIKDIVRANRVVRSDQDPNFWLEFRDIR 86
Query: 69 VGEPEFQEPHGQ---RKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVR----IG 121
VG P E Q R P+ PM+ R+R+LTY+AP+ ++ I + V VR +
Sbjct: 87 VGMPTRTEDGEQVQSRNPVTPMECRLRDLTYAAPVEVD----IAYTRDKNVIVRKNIPLC 142
Query: 122 ELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKD 181
+P+MLKS C L G ++ ++ E P DPGGYF+I G+E+VI+ E ++ NR +VE D
Sbjct: 143 RIPVMLKSAKCYLNGATNAQMEVFNECPLDPGGYFVIGGTEKVILIQEQLSKNRIIVEAD 202
Query: 182 ERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIV 241
E+ +A V S H ++ V KKD I+ + + +P+ V V++A G D DI+
Sbjct: 203 EKTGGVMASVTSSTHERKSKTYVVLKKDRIV-LQHNTLSEPIPIVIVLKAFGGLSDNDII 261
Query: 242 DAV-GNDPEVQQILFDNLEDA--SDITTQQEALEYIGKLVAPGQAREY-----RLKRAEY 293
+ V G D Q N ++A + + TQQ+ALEY+G V G R R AE
Sbjct: 262 ELVCGGDARYQDDFLINFDEAGRAGVYTQQQALEYVGARVKMGGNRPKFGAAPRRNHAEE 321
Query: 294 VID---NNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGD 350
+D N ++ H+ V D KA Y+ MM +V+ + + DD+D NKRL LAG
Sbjct: 322 GLDALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQ 381
Query: 351 LLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALAT 410
L+ LF F + + D++Y + +++ + + N ++ + A+ +
Sbjct: 382 LISLLFEDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMANG---HYISHGLNRAIQS 438
Query: 411 GAWPG-----GRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICP 465
G W R G++ +L R +Y++ L + R++S ++ + R L + WG +C
Sbjct: 439 GNWTVKRFNMNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCT 498
Query: 466 TETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSL--GIVPIE----VRRPSPELWRV 519
++TPEG CGLVKNLALM ITT VPEE VK+ + + + PI S + +
Sbjct: 499 SDTPEGEACGLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTGTEMHSKGSYII 558
Query: 520 YLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIV 579
+LNG + K R + RR G +S +++ E V++ +D+GR+ RP IIV
Sbjct: 559 HLNGTPFAVTREPKRFAARFRTLRRRGWVSPFVSIHINEHFSAVHIATDEGRICRPYIIV 618
Query: 580 ENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLEL 639
+NGK L EH++ ++ G+ + + GV+EYLD EE + VA+ ++T TH+E+
Sbjct: 619 KNGKSMLKAEHLKMLQLGQATFDTFLTSGVVEYLDVNEENDTLVALQEDQITNSTTHMEI 678
Query: 640 MPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPL 699
P ILG A LIP+P HN +PRNTY M KQ++G N R+DT + L YPQ P+
Sbjct: 679 EPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPM 738
Query: 700 VNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEE 759
V ++ ++ + Y+ PAGQN V V++Y GY++EDA+++NKAS++RG R FR Y AE
Sbjct: 739 VITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRKYTAEL 798
Query: 760 KKYLGGQTD------KFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSP 813
+ Y G+ D K E P V+ + LD DGL SKVE +I + +P
Sbjct: 799 QGYTNGRRDRVGGIMKDEDDKPIVK-------HAILDADGLAQVGSKVESGQTMIKKETP 851
Query: 814 PRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIG 873
+ G + R+ S R S+ ++DKV+I+ KL+KV R R PE+G
Sbjct: 852 LDQISTGIAGDRGSDDYRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQTRRPELG 911
Query: 874 DKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAAL 933
DKF+SRHGQKGV+G+IV +EDMP+++ G+ PD+I+NPHG PSRMTVG+L E + GK + +
Sbjct: 912 DKFSSRHGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKASVI 971
Query: 934 KGRR--VDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRL 991
G + G AF P E + + L + GF G++ GITG+ EA I+ G I+YQRL
Sbjct: 972 AGEKDYGFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPMEAYIYNGPIFYQRL 1031
Query: 992 HHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEES 1051
HMV DK+H+RSRGP +LT+QPTEGR+R+GGLR GEMERD L+ +GA+ LL+ERL+ S
Sbjct: 1032 KHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISS 1091
Query: 1052 DKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKL 1111
D TE+ VC+ CG +K YC C ++++ M YA KLL+ EL +M + KL
Sbjct: 1092 DGTELDVCQECGLFG------YKGYCNACKSTRNVTQMTMPYACKLLVQELISMNVGVKL 1145
Query: 1112 NLTE 1115
L +
Sbjct: 1146 KLED 1149
>gb|AAF58590.1| (AE003823) RpIII128 gene product [Drosophila melanogaster]
Length = 1137
Score = 732 bits (1868), Expect = 0.0
Identities = 418/1119 (37%), Positives = 642/1119 (57%), Gaps = 39/1119 (3%)
Query: 15 WIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVV--DEFGGIKPDIPDFEVKFGKIRVGEP 72
W ++ ++ Q KGLV+QH+DS+N FI+ ++++V +E D P F +K+ +RVG+P
Sbjct: 35 WKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGAD-PLFYLKYLDVRVGKP 93
Query: 73 EFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQ-EPVEVRIGELPIMLKSKV 131
+ + K P + R+R+ TYSAP+ ++ I RG ++ + + IG +P+ML+
Sbjct: 94 DIDDGFNITKATTPHECRLRDTTYSAPITVD-IEYTRGTQRIKRNNLLIGRMPLMLRCSN 152
Query: 132 CRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYIAKV 191
C L G S+ EL +L E P DPGGYF++ G E+VI+ E ++ N+ L E +
Sbjct: 153 CALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFNGVVQCQVTS 212
Query: 192 FSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDPEVQ 251
++ R LV K G Y+ ++ + V + +ALG+ D++I +G D + Q
Sbjct: 213 STHEKKSRTLVL---SKHGKYYLKHNSMTDDIPIVVIFKALGVVSDQEIQSLIGIDSKSQ 269
Query: 252 QILFDNLEDASDIT--TQQEALEYIGKLVAPGQAREYRLK----RAEYVIDNNLLPHIGV 305
+L DA ++ TQQ ALEY+G + + + K A ++ +L H+ V
Sbjct: 270 NRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARELLLTTILAHVPV 329
Query: 306 SPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVK 365
+ KA Y+ MM +V+ L K DD+D+Y NKRL LAG LL + F L K
Sbjct: 330 DNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLS----MMFEDLFK 385
Query: 366 DIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWP-----GGRTGV 420
+ +++ + K + +R +T +E A+++G W R GV
Sbjct: 386 RMNWELKTIADKNIPKVKAAQFD--VVKHMRAAQITAGLESAISSGNWTIKRFKMERAGV 443
Query: 421 SQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNL 480
+Q+L R +Y+S L + RV S ++ + R L + WG +CP++TPEG CGLVKNL
Sbjct: 444 TQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 503
Query: 481 ALMAQITTAVPEEEVKEYLMSLGIVPI-EVRRP---SPELWRVYLNGVIIGTIEDGKALV 536
ALM ITT V E V + G+ I EV +P ++ V++NG ++G + K LV
Sbjct: 504 ALMTHITTEVEERPVMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLV 563
Query: 537 ERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKE 596
++ RR G++ ++V R +Y+++D GR+ RP +IVEN +P + + H+ +
Sbjct: 564 RNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNR 623
Query: 597 GRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPE 656
G K+ D + G+IEYLD EE ++++A ++ + THLE+ P +LG+ A L+PYP
Sbjct: 624 GIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPH 683
Query: 657 HNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAG 716
HN +PRNTY M KQ++G+ N + R+D+ + L YP P+V S+ ++ ++ PAG
Sbjct: 684 HNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAG 743
Query: 717 QNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPT 776
QN VAV++Y GY++EDA+I+NKASI+RG R ++ + K+Y D+ I P
Sbjct: 744 QNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR--IMGPM 801
Query: 777 VRGYRGEKYYRH--LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETS 834
+ ++H LD DG++ P +V+ K ++I + P G +
Sbjct: 802 KDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVP 861
Query: 835 VAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQED 894
++ + E +++V+++ + L+K+ +R RIPEIGDKF+SRHGQKGV GLIV QED
Sbjct: 862 ISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQED 921
Query: 895 MPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKE 954
MP+ + GI PD+I+NPHG PSRMTVG+ LE +GGK L+G+ GTAF G E ++ E
Sbjct: 922 MPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSKVEDIQAE 981
Query: 955 LEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQP 1014
LE GF + G++ Y GITG EA I+ G +YYQ+L HMV DK+HAR+RGP VLT+QP
Sbjct: 982 LERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQP 1041
Query: 1015 TEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHK 1074
T+GR+REGGLR GEMERD L+ +GA+ML++ERL+ SD EV VC CG +A +
Sbjct: 1042 TQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMA------YC 1095
Query: 1075 VYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNL 1113
+C C +SK+ M YA KLL EL +M + PK+ L
Sbjct: 1096 SWCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMIL 1134
>gb|AAK40567.1| DNA-directed RNA polymerase, subunit B' (rpoB1) [Sulfolobus
solfataricus]
Length = 649
Score = 728 bits (1859), Expect = 0.0
Identities = 355/642 (55%), Positives = 479/642 (74%), Gaps = 16/642 (2%)
Query: 490 VPEEEVKEYLMSLGIVPIE--VRRPSPE--------LW-RVYLNGVIIGTIEDGKALVER 538
+ E V++ L +G+VP+E +RR + W +V LNG +IG +DG L +
Sbjct: 5 INERIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLIGYYQDGGELANK 64
Query: 539 IKKDRRSGKISDIINVAYY--EDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKE 596
I++ RR G+ISD +NV + + + EV+VN D GRVRRPLIIV NG P +T E ++ ++
Sbjct: 65 IRERRRKGEISDEVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTIEDIEKLES 124
Query: 597 GRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPE 656
G + + DLVR G IEYLDAEEEENAYVA+ P ++T +HTHLE+ AILG+ AS+IPYPE
Sbjct: 125 GAITFDDLVRQGKIEYLDAEEEENAYVALEPNDLTPDHTHLEIWSPAILGITASIIPYPE 184
Query: 657 HNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAG 716
HN +PRNTY + MAKQ+LGL AN+++R DTR HLLHYPQ PLV +R + +GY +RPAG
Sbjct: 185 HNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAG 244
Query: 717 QNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPT 776
N ++AV+++ GYNMED+II+N++S+ERG+ RSTFFR Y EE KY GGQ DK +P
Sbjct: 245 NNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPEAG 304
Query: 777 VRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEE-RGLGAVSLQERRETSV 835
VRGY+G++YYR L+++G++ PE +V+G DVLIG+ SPPRFL+E + L Q +R+TS+
Sbjct: 305 VRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPE--QAKRDTSI 362
Query: 836 AVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDM 895
R E G+VD V+ITET +G KLVKV VRDLRIP IGDKFASRHGQKGVIG+++PQ DM
Sbjct: 363 VTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIPTIGDKFASRHGQKGVIGMLIPQVDM 422
Query: 896 PWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKEL 955
P+T G+VPD+I+NPH +PSRMT+GQ++E I GK AAL G VD T F P E+L+ E+
Sbjct: 423 PYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQNEI 482
Query: 956 EELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPT 1015
G+ E++YDG TG++ ++ I+ GV+YYQ+LHHMVADK+HAR+RGPVQ+LT+QPT
Sbjct: 483 LRYGYLPDATEVVYDGRTGQKIKSRIYFGVVYYQKLHHMVADKLHARARGPVQILTRQPT 542
Query: 1016 EGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKV 1075
EGRAREGGLRFGEMERD L+G G AMLL +RLL+ SD+T ++VC+ CG+I DK ++K
Sbjct: 543 EGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTMIYVCDQCGYIGWYDKNKNKY 602
Query: 1076 YCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTERV 1117
CP+ G++ + V +SYAFKLL+ EL +M+I P+L L ++V
Sbjct: 603 VCPIHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLVLEDKV 644
>sp|P25167|RPC2_DROME DNA-DIRECTED RNA POLYMERASE III 128 KD POLYPEPTIDE (RNA POLYMERASE
III SUBUNIT 2) >gi|66988|pir||RNFF32 DNA-directed RNA
polymerase (EC 2.7.7.6) III second-largest chain - fruit
fly (Drosophila melanogaster) >gi|10963|emb|CAA41631.1|
(X58826) RNA polymerase III second-largest subunit
[Drosophila melanogaster]
Length = 1135
Score = 717 bits (1831), Expect = 0.0
Identities = 416/1119 (37%), Positives = 638/1119 (56%), Gaps = 41/1119 (3%)
Query: 15 WIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVV--DEFGGIKPDIPDFEVKFGKIRVGEP 72
W ++ ++ Q KGLV+QH+DS+N FI+ ++++V +E D P F +K+ +RVG+P
Sbjct: 35 WKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGAD-PLFYLKYLDVRVGKP 93
Query: 73 EFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQ-EPVEVRIGELPIMLKSKV 131
+ + K P + R+R+ TYSAP+ ++ I RG ++ + + IG +P+ML+S
Sbjct: 94 DIDDGFNITKATTPHECRLRDTTYSAPITVD-IEYTRGTQRIKRNNLLIGRMPLMLRSN- 151
Query: 132 CRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYIAKV 191
C L G S+ EL +L E P DPGGYF++ G E+VI+ E ++ N+ L E +
Sbjct: 152 CALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFNGVVQCQVTS 211
Query: 192 FSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDPEVQ 251
++ R LV K G Y+ ++ + V + +ALG+ D++I +G D + Q
Sbjct: 212 STHEKKSRTLVL---SKHGKYYLKHNSMTDDIPIVVIFKALGVVSDQEIQSLIGIDSKSQ 268
Query: 252 QILFDNLEDASDIT--TQQEALEYIGKLVAPGQAREYRLK----RAEYVIDNNLLPHIGV 305
+L DA ++ TQQ ALEY+G + + + K A ++ +L H+ V
Sbjct: 269 NRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARELLLTTILAHVPV 328
Query: 306 SPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVK 365
+ KA Y+ MM +V+ L K DD+D+Y NKRL LAG LL + F L K
Sbjct: 329 DNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLS----MMFEDLFK 384
Query: 366 DIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWP-----GGRTGV 420
+ +++ + K + +R +T +E A+++G W R GV
Sbjct: 385 RMNWELKTIADKNIPKVKAAQFD--VVKHMRAAQITAGLESAISSGNWTIKRFKMERAGV 442
Query: 421 SQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNL 480
+Q+L R +Y+S L + RV S ++ + R L + WG +CP+ TPEG CGLVKNL
Sbjct: 443 TQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSYTPEGEACGLVKNL 502
Query: 481 ALMAQITTAVPEEEVKEYLMSLGIVPI-EVRRP---SPELWRVYLNGVIIGTIEDGKALV 536
ALM ITT V E V + G+ I EV +P ++ V++NG ++G + K LV
Sbjct: 503 ALMTHITTEVEERPVMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLV 562
Query: 537 ERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKE 596
++ RR G++ ++V R +Y+++D GR+ RP +IVEN +P + + H+ +
Sbjct: 563 RNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNR 622
Query: 597 GRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPE 656
G K+ D + G+IEYLD EE ++++A ++ + THLE+ +LG+ A L+PYP
Sbjct: 623 GIRKFDDFLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIETFTLLGVCAGLVPYPH 682
Query: 657 HNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAG 716
HN +PRNTY M KQ++G+ N R+D+ + L YP P+V S+ ++ ++ PAG
Sbjct: 683 HNQSPRNTYQCAMGKQAMGMIGYNHNNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAG 742
Query: 717 QNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPT 776
QN VAV++Y GY++EDA+I+NKASI+RG R ++ + K+Y D+ I P
Sbjct: 743 QNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDR--IMGPM 800
Query: 777 VRGYRGEKYYRH--LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETS 834
+ ++H LD DG++ P +V+ K ++I + P G +
Sbjct: 801 KDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVP 860
Query: 835 VAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQED 894
++ + E +++V+++ + L+K+ +R RIP GDKF+SRHGQKGV GLIV QED
Sbjct: 861 ISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPR-GDKFSSRHGQKGVTGLIVEQED 919
Query: 895 MPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKE 954
MP+ + GI PD+I+NPHG PSRMTVG+ LE +GGK L+G+ GTAF G E ++ E
Sbjct: 920 MPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSKVEDIQAE 979
Query: 955 LEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQP 1014
LE GF + G++ Y GITG EA I+ G +YYQ+L HMV DK+HAR+RGP VLT+QP
Sbjct: 980 LERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQP 1039
Query: 1015 TEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHK 1074
T+GR+REGGLR GEMERD L+ +GA+ML++ERL+ SD EV VC CG +A +
Sbjct: 1040 TQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMA------YC 1093
Query: 1075 VYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNL 1113
+C C +SK+ M YA KLL EL +M + PK+ L
Sbjct: 1094 SWCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMIL 1132
>dbj|BAB11387.1| (AB012240) DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 1194
Score = 707 bits (1805), Expect = 0.0
Identities = 417/1139 (36%), Positives = 657/1139 (57%), Gaps = 48/1139 (4%)
Query: 7 VEVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDI-PDFEVKFG 65
++ T D +V E + + +GLV+QHLDS+N FI+ G+ ++V I + P ++F
Sbjct: 47 IKSTADKFQLVPE-FLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRFK 105
Query: 66 KIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVE-----VRI 120
K+RVGEP + + P R+ ++TY+AP+++ I + G + V I
Sbjct: 106 KVRVGEPSIINVNTVEN-INPHMCRLADMTYAAPIFVN-IEYVHGSHGNKAKSAKDNVII 163
Query: 121 GELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK 180
G +PIML+S C L+G ++EL +LGE P DPGGYFII G+E+V++ E ++ NR +++
Sbjct: 164 GRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDS 223
Query: 181 DERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDI 240
D++ A V S ++ ++ +K+ I Y+ + K + + V++A+G+E D++I
Sbjct: 224 DKKGN-INASVTSSTEMTKSKTVIQMEKEKI-YLFLHRFVKKIPIIIVLKAMGMESDQEI 281
Query: 241 VDAVGNDPEVQQILFDNLED--ASDITTQQEALEYIG---KLVAPGQAREYRLKRAEYVI 295
V VG DP L ++E+ + + TQ++AL+Y+ K ++ G E + RA ++
Sbjct: 282 VQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTPPE-KDGRALSIL 340
Query: 296 DNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLL--- 352
+ L H+ V + +K +Y+G+M ++IE L K DDKD+ NKRL L+G L+
Sbjct: 341 RDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLL 400
Query: 353 -KDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGN-IHRFIRNSIRPDVLTERIEHALAT 410
+DLF+ S+ +K++ + + K R ++ F +++ R SI + +E L+T
Sbjct: 401 FEDLFKTMLSEAIKNVDHILNKPI--RASRFDFSQCLNKDSRYSI-----SLGLERTLST 453
Query: 411 GAWP-----GGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICP 465
G + R G++Q+L R +++ ++ + +++ ++ + R L + WG +CP
Sbjct: 454 GNFDIKRFRMHRKGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCP 513
Query: 466 TETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRP----SPELWRVYL 521
+TPEG +CGLVKNLALM +TT E + LG+ +EV +P+ + V L
Sbjct: 514 CDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVIL 573
Query: 522 NGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVEN 581
NG+I+G + +++ RR+GKI + ++V E VYV SD GRV RPL+I +
Sbjct: 574 NGLILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIADK 633
Query: 582 GKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMP 641
G ++ + H++ +++G + D +R G+IEYLD EE NA V + + TH+E+ P
Sbjct: 634 GISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALVCLRAEAAKADTTHIEIEP 693
Query: 642 AAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVN 701
ILG+ A LIPYP HN +PRNTY M KQ++G N R+DT +LL YPQ PL+
Sbjct: 694 FTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLT 753
Query: 702 SRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKK 761
+R ++ VGY+ AGQN VAV+++ GY++EDAI++NK+S++RG R + A +K
Sbjct: 754 TRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQK 813
Query: 762 YLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERG 821
Y D+ IP T G EK + LD+DGL P + D+ I + P + +
Sbjct: 814 YDNCTADRILIPQRT--GPDAEK-MQILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFT 870
Query: 822 LGAVSLQERRETSVAVRP-SERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRH 880
Q R P E VVD+V + G +K +R R PE+GDKF+SRH
Sbjct: 871 SALSDSQYRPAREYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRH 930
Query: 881 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDG 940
GQKGV G+I+ QED P++E GI PDLI+NPHG PSRMTVG+++E +G K GR G
Sbjct: 931 GQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSCGRFHYG 990
Query: 941 TAF-----IGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMV 995
+AF + E + L E GF ++G++++Y GI+G+ EA IF+G IYYQ+L HMV
Sbjct: 991 SAFGERSGHADKVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMV 1050
Query: 996 ADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTE 1055
DK+HAR GP ++T+QPTEG+++ GGLR GEMERD L+ +GA+ML+ ERL+ SD E
Sbjct: 1051 LDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFE 1110
Query: 1056 VWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLT 1114
V VC CG + + + K C C + I+ +++ YA KLL ++K + + KL L+
Sbjct: 1111 VQVCRACGLLGYYNYKLKKAVCTTCKNGDNIATMKLPYACKLLF-QVKTIGLFFKLKLS 1168
>gb|AAF19067.1|AF107795_1 (AF107795) DNA-dependent RNA polymerase II RPB140 [Trichophyton
rubrum]
Length = 1109
Score = 698 bits (1783), Expect = 0.0
Identities = 425/1120 (37%), Positives = 616/1120 (54%), Gaps = 148/1120 (13%)
Query: 44 QEVVDEFGGI--------KPDIPD------FEVKFGKIRVGEPEFQEPHGQRKPLYPMDA 89
QE+V+E G + D PD +E+KFG + + P E G + P +A
Sbjct: 1 QELVEEQGQVTLDQTVPPSDDEPDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEA 60
Query: 90 RIRNLTYSAPLYLEMIPVI----------RGIEQEPVEVR-------------------- 119
R+RNLTY++PLYL + I R E+E +E +
Sbjct: 61 RLRNLTYASPLYLGISKKIMEGRERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTM 120
Query: 120 ----------IGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIE 169
IG++PIMLKSK C L L + L E P D GGYF+INGSE+V+++ E
Sbjct: 121 EDEAEEENIFIGKMPIMLKSKYCILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQE 180
Query: 170 DIAPNRTLVEKDERQEK--YIAKVFS-YRHGYRALVTVERK--------KDGI---LYVG 215
A N V K Y+A++ S G R L + K K G +
Sbjct: 181 RSAGNIVQVFKKAPPSPTPYVAEIRSAVEKGSRILSQLSIKLFSKGDSAKGGFGPTIRST 240
Query: 216 IPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALE 272
+P + + V V RALG+ D+DI++ + ND + ++L +E+ I ++ AL+
Sbjct: 241 LPYIKTDIPIVVVFRALGVVSDEDILNHICYDRNDTSMLEMLKPCIEEGFVIQDREVALD 300
Query: 273 YIGKLVAPGQA--REYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLG 330
+I K + + +E R++ A +I LPHI S RKA++LG M ++++ +LG
Sbjct: 301 FISKRGSSPMSMNQEKRVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALG 360
Query: 331 KRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRF 390
+R DD+DH+ KRL LAG LL +LFRV F +L KD+ + + + + Y+ NI
Sbjct: 361 RRYVDDRDHFGKKRLDLAGPLLANLFRVLFMRLTKDLYKYVQRCVETGRQLYL--NI--- 415
Query: 391 IRNSIRPDVLTERIEHALATGAW------PGGRTGVSQLLDRTNYVSTLSHLRRVTSPLD 444
++ LT +++ALATG W + GVSQ+L+R Y STLSHLRR +P+
Sbjct: 416 ---GVKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIG 472
Query: 445 REQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGI 504
R+ + R LH THWG +CP ETPEG CGLVKNLALM IT P E + ++++
Sbjct: 473 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNR 532
Query: 505 VPIEVRRP--SPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVRE 562
+E P SP +V++NGV +G D LV ++ RR IS +++ + RE
Sbjct: 533 EVLEEFEPQVSPNSTKVFVNGVWVGVHRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDRE 592
Query: 563 VYVNSDDGRVRRPLIIVEN-------GKPKLTKEHVQAI---------------KEGRLK 600
+ +D GRV RPL +V+N G L KEH+ + +E
Sbjct: 593 FKIFTDAGRVCRPLFVVDNDPKSENSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFG 652
Query: 601 WSDLVRMGVIEYLDAEEEENAYVAMWP------------WEVTEEHT------------- 635
W LV+ GVIEY+DAEEEE + M P + + EE T
Sbjct: 653 WDGLVKSGVIEYVDAEEEETIMIVMTPEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQ 712
Query: 636 ------HLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRG 689
H E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ NF R++T
Sbjct: 713 KAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFEQRMETMA 772
Query: 690 HLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARS 749
++L+YPQ PL +R M+ + + + PAG+N +VA+ Y GYN ED++I+N++SI+RGL RS
Sbjct: 773 NILYYPQKPLATTRSMEFLKFRELPAGRNVIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 832
Query: 750 TFFRTYEAEEKKYLGGQTDKFEIP--SPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVL 807
F+RTY EK ++FE P S T+R G Y +D+DG++ P +V G+D++
Sbjct: 833 LFYRTYTDSEKMIGLTVVERFEKPMRSDTLRMKHGT--YDKVDDDGIVSPGVRVSGEDII 890
Query: 808 IGRTSPPRFLEERGLGAVSLQERR-ETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRD 866
IG+TSP E LG + Q + + S +R +E G+VD+V+++ + D K VKV +R
Sbjct: 891 IGKTSPLA-PEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRT 949
Query: 867 LRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAI 926
+IP+IGDKFASRHGQKG IG+ EDMP+T G+ PDLI+NPH IPSRMT+ L+E
Sbjct: 950 TKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQ 1009
Query: 927 GGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVI 986
KV++L+G D T F + + L E G++ G E+MY+G TG++ A +F+G
Sbjct: 1010 LSKVSSLRGYEGDATPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 1069
Query: 987 YYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRF 1026
YYQRL HMV DKIHAR+RGP Q+LT+QP EGRAR+GGLRF
Sbjct: 1070 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 1109
>gb|AAF19065.1|AF107793_1 (AF107793) DNA-dependent RNA polymerase II RPB140 [Aspergillus
nidulans]
Length = 1009
Score = 695 bits (1773), Expect = 0.0
Identities = 397/1019 (38%), Positives = 588/1019 (56%), Gaps = 91/1019 (8%)
Query: 161 SERVIVSIEDIAPNRTLVEKDERQEK--YIAKVFS-YRHGYRALVTVERKKDG------- 210
SE+V+++ E A N V K Y+A++ S G R L + K G
Sbjct: 1 SEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGKGDSAKG 60
Query: 211 ----ILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASD 263
+ +P + + V V RALG+ D+DI++ + ND + ++L +E+
Sbjct: 61 GFGPTIRSTLPYIKADIPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFV 120
Query: 264 ITTQQEALEYIGKLVAPGQA--REYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMA 321
I ++ AL++I K + + E R++ A ++ LLPHI S RKA++LG M
Sbjct: 121 IQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMV 180
Query: 322 LKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEK 381
++++ +LG+RD DD+DH+ KRL LAG LL +LFRV F+++ +D+Q + + + E
Sbjct: 181 HRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVESDREI 240
Query: 382 YVFGNIHRFIRNSIRPDVLTERIEHALATGAW------PGGRTGVSQLLDRTNYVSTLSH 435
Y+ N+ ++ +T+ + +ALATG W + GVSQ+L R Y STLSH
Sbjct: 241 YL--NV------GLKASTVTQGLRYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSH 292
Query: 436 LRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEV 495
LRR +P+ R+ + R LH THWG +CP ETPEG CGLVKNLALM IT P E +
Sbjct: 293 LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPI 352
Query: 496 KEYLMSLGIVPIEVRRP--SPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIIN 553
++++ + +E P +P +V++NGV +G LVE ++ RR IS ++
Sbjct: 353 IDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRQPSHLVETMQALRRRNMISHEVS 412
Query: 554 VAYYEDVREVYVNSDDGRVRRPLIIVEN-------GKPKLTKEHVQAIKEGR-------- 598
+ RE + +D GRV RPL +V+N G L KEH++ ++E +
Sbjct: 413 LIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGNLVLNKEHIRKLEEDKELPPDMDP 472
Query: 599 -------LKWSDLVRMGVIEYLDAEEEENAYVAMWP------------WEVTEEH----- 634
W LV+ GV+EY+DAEEEE + M P + + EE
Sbjct: 473 EDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQLQAGYALPEEQDPNKR 532
Query: 635 ------------THLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFR 682
TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ NF
Sbjct: 533 VRSILSQRAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFD 592
Query: 683 IRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASI 742
R++T ++L+YPQ PL +R M+ + + + PAGQN +VA+ Y GYN ED++I+N++SI
Sbjct: 593 QRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSI 652
Query: 743 ERGLARSTFFRTYEAEEKKYLGGQTDKFEIP--SPTVRGYRGEKYYRHLDEDGLIFPESK 800
+RGL RS F+RTY EK ++FE P S T+ +G Y LDEDG++ P +
Sbjct: 653 DRGLFRSLFYRTYSDSEKMVGLTVVERFEKPMRSDTIGMRKGT--YDKLDEDGIVNPGVR 710
Query: 801 VEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLV 860
V G+D++IG+T+P E + + S +R +E G+VD+V++T T D + V
Sbjct: 711 VSGEDIIIGKTAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSV 770
Query: 861 KVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVG 920
KV +R ++P+IGDKFASRHGQKG IG+ QEDMP+T G+ PDLI+NPH IPSRMT+
Sbjct: 771 KVRMRMTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIA 830
Query: 921 QLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEAD 980
L+E KV+AL+G D T F + + + L E G++ G E+MY+G TG++ A
Sbjct: 831 HLIECQLSKVSALRGFEGDATPFTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQ 890
Query: 981 IFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAA 1040
+F+G YYQRL HMV DKIHAR+RGP Q+LT+QP EGRAR+GGLRFGEMERD ++ HGA+
Sbjct: 891 VFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGAS 950
Query: 1041 MLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVY-CPVCGEEERISKVEMSYAFKLL 1098
L ERL + SD V +C++CG + K + ++ C +C + RIS+V + YA KLL
Sbjct: 951 AFLKERLFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLL 1009
>gb|AAF19069.1|AF107797_1 (AF107797) DNA-dependent RNA polymerase II RPB140 [Capronia mansonii]
Length = 1029
Score = 682 bits (1740), Expect = 0.0
Identities = 383/972 (39%), Positives = 563/972 (57%), Gaps = 77/972 (7%)
Query: 207 KKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASD 263
K D + V +P V + + V V RAL + D DI++ + +D E+ +L +L++
Sbjct: 62 KIDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMMDMLMGSLQEGQP 121
Query: 264 ITTQQEALEYIGKLV-APGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMAL 322
I A ++I + P R K A ++ LPHIG P+ RKA++LG M
Sbjct: 122 IQGADLARDFIARRGNVPSLKSHERQKHATDILQKEFLPHIGQGPDATARKAFFLGYMVN 181
Query: 323 KVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKY 382
++++ +LG+ + DD+DH KRL LAG L+ +LFR+ F + KD M Q+R E
Sbjct: 182 RLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFYRYM----QKRVESG 237
Query: 383 VFGNIHRFIRNSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTLSHL 436
NI ++ I +T ++++LATG W + GVSQ+L R + STLSHL
Sbjct: 238 QPINIMAGFKHPI----ITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFSSTLSHL 293
Query: 437 RRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVK 496
RR +P+ RE + R LH THWG +CP ETPEG CGLVKNL+LM+ +T + +
Sbjct: 294 RRTNAPIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNSYETGPLL 353
Query: 497 EYLMSLGIVPIEVRRP--SPELWRVYLNGVIIGTI-EDGKALVERIKKDRRSGKISDIIN 553
Y+M+ + +E P +P +++++GV + D K LV+ ++K RR G ++
Sbjct: 354 NYVMTKHVEALEDWEPRLNPRATKIFVDGVWFAVVLRDPKRLVDDLRKLRRKGVFDSHVS 413
Query: 554 VAYYEDVREVYVNSDDGRVRRPLIIVEN-------GKPKLTKEHVQA------IKEGRLK 600
+ + +E ++ D GR+ RPL +VE G L KEH+ +KE +
Sbjct: 414 LVWDIREKEFKISGDSGRIVRPLFVVETDRSSENLGNLVLNKEHINKLDQTAYLKESGFQ 473
Query: 601 ---------WSDLVRMGVIEYLDAEEEENAYVAMWP---------W---EVTEE------ 633
W+DL+ GV+EYLDAEEEE A + M P W E+ E
Sbjct: 474 WTDEIRPYGWTDLLESGVVEYLDAEEEETAMICMTPEALADSKARWLGMEIENEDDPLRR 533
Query: 634 -----------HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFR 682
TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ NF
Sbjct: 534 NDPLLNPHAHTFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFD 593
Query: 683 IRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASI 742
R++T ++L+YPQ PL + M + + + PAGQN +VA+ Y GYN ED++I+N++SI
Sbjct: 594 QRMETMANILYYPQKPLARTMAMDYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSI 653
Query: 743 ERGLARSTFFRTYEAEEKKYLGGQTDKFEIP--SPTVRGYRGEKYYRHLDEDGLIFPESK 800
+RGL RS F+RTY+ EK ++FE P S T+R G Y +DEDG++ P +
Sbjct: 654 DRGLFRSLFYRTYQDSEKSVGHSVVEQFEKPTRSDTLRLKHGT--YDKIDEDGIVAPGVR 711
Query: 801 VEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLV 860
V G+D+++G+T+P E + +R+ S +R +E G+VD+V++T T +G +
Sbjct: 712 VSGEDIIMGKTAPMAPDAEELGQRLKQHIKRDVSTPLRSTESGIVDQVMLTTTAEGHRFA 771
Query: 861 KVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVG 920
KV VR ++P+IGDKFASRHGQKG IG+ EDMP+T GIVPDLI+NPH IPSRMT+
Sbjct: 772 KVRVRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTIA 831
Query: 921 QLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEAD 980
L+E KVA L+G D T F ++ + L +G++ G E+MY+G TG++ A
Sbjct: 832 HLIECQLSKVATLRGDEGDATPFTKVTVTQVSELLRTMGYQSRGFEVMYNGHTGRKMVAQ 891
Query: 981 IFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAA 1040
+F+G YYQRL HMV DKIH+R+RGP Q+LT+QP EGRAR+GGLRFGEMERD ++ HGA+
Sbjct: 892 VFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGAS 951
Query: 1041 MLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVY-CPVCGEEERISKVEMSYAFKLLL 1099
L ERL + SD V VC+ CG + + K + + C C + +IS++ + YA KLL
Sbjct: 952 SFLKERLFDVSDPFRVHVCDICGLMTVIAKLKKNTFECKNCNNKNKISQIYLPYAAKLLF 1011
Query: 1100 DELKAMVIRPKL 1111
EL AM I +L
Sbjct: 1012 QELWAMNIAARL 1023
>emb|CAB95348.1| (AL359782) possible putative DNA-directed RNA polymerase iii 130 Kd
polypeptide(ec 2.7.7.6) [Trypanosoma brucei]
Length = 1129
Score = 666 bits (1700), Expect = 0.0
Identities = 400/1127 (35%), Positives = 626/1127 (55%), Gaps = 68/1127 (6%)
Query: 25 KGLVRQHLDSYNAFIDRGLQEVV--DEFGGIKPDI-PDFEVKFGKIRVGEPEFQEPHGQR 81
KGL+ H+ S++ I+ L ++ + IK I PDF +++ IRV P GQ
Sbjct: 27 KGLLNHHVASFDHLINVELGRILLNESNREIKSSIDPDFSIRYSGIRVCRPREIVGKGQL 86
Query: 82 -KPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQE---PVEVRIGELPIMLKSKVCRLYGL 137
KP+ P + R R+LTY + +++ R + ++IG +PIMLKS C LYG
Sbjct: 87 PKPVSPHECRTRDLTYRGDIVVDVEYTSRDRSKRICTETNIKIGTIPIMLKSSSCNLYGK 146
Query: 138 SDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYIAKVFSYRHG 197
+EL + E P DPGGYFII G E+V + E + NR ++E D+ + +A V S H
Sbjct: 147 GREELIAMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADDNGD-IVAHVQSKTHY 205
Query: 198 YRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDN 257
+ +V +K I+ V + + + V V++ALG+E D+ I +G P Q +LF
Sbjct: 206 SISKCSVTFRKGRIVMVH-RSFKEDIPIVVVLKALGMESDQQIAQHIGVSPAFQSVLFAC 264
Query: 258 LEDAS--DITTQQEALEYIGKL-------VAPGQAREYRLKRAEYVID---NNLLPHIGV 305
E A+ ++ TQ +AL +IG+ + Q R + +A+ + N LL HI
Sbjct: 265 FEHAASLNVKTQDDALHFIGERRKETFWEMDETQQRHVQKSKADSAAEFLANVLLCHIRE 324
Query: 306 SPEDRI----RKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFS 361
R KA Y+ M +++E S+ D++D Y NKR G L+ LF
Sbjct: 325 GEVQRDWNFRHKALYVCFMVRRMVEASVDSSLLDERDFYGNKRFETTGTLMGLLFEDLLK 384
Query: 362 QLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWP-----GG 416
Q + ++ M + ++ F N+ + + + + +V+ + AL++G W
Sbjct: 385 QYNRVVKTAMDQLLSKKDTTKPF-NLKQLMESKM--EVIQNGMRVALSSGRWELKRFNMS 441
Query: 417 RTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGL 476
R G++Q+L R +Y+S + + R+ S ++ + R L + WG +CP +TPEG +CGL
Sbjct: 442 RQGITQVLSRLSYISCIGMMTRLASSFEKSRKISGPRSLQPSQWGMVCPCDTPEGESCGL 501
Query: 477 VKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPSPEL--WRVYLNGVIIGTIEDGKA 534
VKN A+++Q+T + + V+ +LG+ ++ P+ L + V+LNG ++G
Sbjct: 502 VKNFAILSQVTLDMDDSFVRAAAYNLGVEEVDCISPNEFLKYYTVFLNGTLMGIHRYPSR 561
Query: 535 LVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAI 594
L ++ RRSG++ +++A + + V + D GR+ R I+V +GKP +T +H+ +
Sbjct: 562 LCRGVRTLRRSGRLHPHVSIAINDRQKSVQIGCDGGRIVRLYIVVRDGKPAVTSQHLDNL 621
Query: 595 KEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPY 654
G+ +D + G++E++D E + +A++P ++ + THLE+ P ++LG+ A +IP+
Sbjct: 622 SSGKCSINDFLAEGLVEFIDVNEANDCLIAVYPKDIEQYTTHLEIEPLSLLGVVAGIIPF 681
Query: 655 PEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRP 714
P HN + RNT+ + M KQ+LG N IR+DT L YPQ PL ++ M YE
Sbjct: 682 PHHNQSARNTFQSAMGKQALGTIAYNQYIRMDTVLMLGAYPQRPLCRTKAMNLTNYEILG 741
Query: 715 AGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPS 774
AG N +V V++Y GY++EDA + N++S++RG R R +E E ++ G+ D +P+
Sbjct: 742 AGINAMVCVMSYSGYDIEDAQVYNRSSLDRGYGRCVVLRKHEVELERLPNGEYDII-LPA 800
Query: 775 PTVRGYRGEKYYRH--LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRE 832
+ G RH L+ DG+ + V D+L+ + +P V E R
Sbjct: 801 DSNVG-------RHSALNSDGIASKGAVVRQFDILVNKYTP-----------VPSMEPRP 842
Query: 833 TSVAVRPSERGVVDKVIITETGDGTKL------VKVTVRDLRIPEIGDKFASRHGQKGVI 886
+ + + VVD V+I+ GD + +KV R++R PE GDKF+SRHGQKGV+
Sbjct: 843 NPLVYKYPQPAVVDHVVISPPGDSDRSMDVEQKIKVVTREVRGPEPGDKFSSRHGQKGVV 902
Query: 887 GLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGE 946
GLI +MP+ E GI PD+I+NPHG PSRMTVG+LLE + KV+AL G+ DGTAF G+
Sbjct: 903 GLITDGVNMPFNEQGICPDMIMNPHGFPSRMTVGKLLELVSSKVSALTGKFGDGTAFGGD 962
Query: 947 PEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGP 1006
E L +EL G+ + G++I Y G+TG+ A +F G IYYQRL HMV DK+HAR+ GP
Sbjct: 963 KAEDLGEELIRHGYNYHGKDIFYSGVTGEMLRAYVFFGPIYYQRLKHMVTDKMHARATGP 1022
Query: 1007 VQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIA 1066
+LT+QPTEGR+R GGLR GEMERD +VG+GA+ LL ERLL SD + +C CG +
Sbjct: 1023 RSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLNERLLVSSDLFTIDICRCCGFMG 1082
Query: 1067 LEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNL 1113
+ YC C + +S+V + YAFKLLL EL+ M I +L+L
Sbjct: 1083 ------YNGYCSYCNAKNTVSRVNVPYAFKLLLQELQGMGISTRLSL 1123
>gb|AAF19071.1|AF107799_1 (AF107799) DNA-dependent RNA polymerase II RPB140 [Aureobasidium
pullulans]
Length = 936
Score = 650 bits (1658), Expect = 0.0
Identities = 364/946 (38%), Positives = 552/946 (57%), Gaps = 90/946 (9%)
Query: 161 SERVIVSIEDIAPNRTLV-EKDERQEKYIAKVFSYRH-GYRALVTV--------ERKKDG 210
SE+V+++ E A N V +K +A++ S G R L ++ E+KK G
Sbjct: 1 SEKVLIAQERSAANIVQVFKKKGSPTPIVAEIRSATEKGTRLLSSMQLKLYQKGEQKKGG 60
Query: 211 ILY----VGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASD 263
IL +P + + V V RALG+ D I+D + ND ++++++ LE+A
Sbjct: 61 ILTGTIKATLPYIKADIPIVIVFRALGIVSDMQILDCICYDANDTQLREMIKPCLEEAFV 120
Query: 264 ITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALK 323
+ ++ AL++IGK +E R++ A ++ LPHI RKA++LG M +
Sbjct: 121 VQDRENALDFIGKRGNQVGGKEKRIRYARDILQKEFLPHISQREGSETRKAFFLGYMINR 180
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
+ ++ LG+ DEDD+DH+ KRL L+G L+ +FR+ F+QLV+D++ +++ ++ G +
Sbjct: 181 MCQVMLGRCDEDDRDHFGKKRLDLSGPLMAQVFRLKFTQLVRDMRVYLSRCIEQ-GRDFN 239
Query: 384 FGNIHRFIRNSIRPDVLTERIEHALATGAW------PGGRTGVSQLLDRTNYVSTLSHLR 437
+ +++ ++LT + + LATG W + GVSQ+L+R Y STLSHLR
Sbjct: 240 -------LTLAVKSNILTSGLRYCLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLR 292
Query: 438 RVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKE 497
R +P+ R+ + R LH THWG +CP ETPEG CGLVKNL+LM ++ P E + E
Sbjct: 293 RTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIVE 352
Query: 498 YLMSLGIVPIEVRRP--SPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVA 555
++ + +E P +P+ +V++NGV +G D LV+ ++ RR+G IS I++
Sbjct: 353 FMNQRNMELLEEYEPKNNPDATKVFVNGVWVGVHRDPSQLVKVVQSLRRNGTISFEISLI 412
Query: 556 YYEDVREVYVNSDDGRVRRPLIIVEN-------GKPKLTKEHVQAIKEGR---------- 598
RE + +D GRV RPL +V N G+ L + H+ + R
Sbjct: 413 RDVREREFKIFTDAGRVMRPLFVVNNDPASPTKGQLTLNRSHISQLLNARETDTIGLSEE 472
Query: 599 ------LKWSDLVRMGVIEYLDAEEEENAYVAMWPWE----------------VTEEH-- 634
W +L+ GV+EYLDAEEEE A + M P + VT+ H
Sbjct: 473 ERDGTIYGWKNLISDGVVEYLDAEEEEVAMMVMSPEDLDEHRQMRAGLVYEEPVTDPHRR 532
Query: 635 ------------THLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFR 682
TH E+ PA ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ N+
Sbjct: 533 IKSRPNANVRTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGITLTNYN 592
Query: 683 IRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASI 742
+R+DT ++L+YPQ PL +R M+ + + + PAGQN +VA+ Y GYN ED++I+N++SI
Sbjct: 593 VRMDTMANVLYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSI 652
Query: 743 ERGLARSTFFRTYEAEEKKYLGGQTDKFEIPS--PTVRGYRGEKYYRHLDEDGLIFPESK 800
+RGL RS F+R Y +EK+ ++FE P+ T+R G Y LD+DG+I P ++
Sbjct: 653 DRGLFRSLFYRAYMDQEKRVGMSVVEQFEKPTRGDTMRMKHGT--YDKLDDDGIIAPGTR 710
Query: 801 VEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLV 860
V G+D++IG+T+P E +R+ S +R +E G++D+V++T +G K V
Sbjct: 711 VSGEDIIIGKTAPMAPDAEELGQRTKFHIKRDVSTPLRSTESGLIDQVLLTTNVEGLKFV 770
Query: 861 KVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVG 920
KV R +IP+IGDKFASRHGQKG IG+ QEDMP+T G+VPD+I+NPH IPSRMT+
Sbjct: 771 KVRTRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTADGLVPDIIINPHAIPSRMTIA 830
Query: 921 QLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEAD 980
L+E + KV +L+G+ D T F ++ L + GF+ G E+MY+G TG++ A
Sbjct: 831 HLIECLLSKVGSLRGQEGDATPFTDVTVTQISDLLRQHGFQQRGFEVMYNGHTGRKMNAQ 890
Query: 981 IFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRF 1026
+F+G YYQRL HMV DKIHAR+RGP Q+LT+QP EGRAR+GGLRF
Sbjct: 891 VFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 936
>gb|AAF19058.1|AF107786_1 (AF107786) DNA-dependent RNA polymerase II RPB140 [Neolecta
vitellina]
Length = 930
Score = 647 bits (1652), Expect = 0.0
Identities = 366/919 (39%), Positives = 549/919 (58%), Gaps = 75/919 (8%)
Query: 168 IEDIAPNRTLVEKDERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVY 227
+ +A R+ VEK R + ++ R+ + V+ R ++ +P + + V
Sbjct: 27 LSHVAEVRSAVEKGSRLISSL-QIKLLRNPQKTSVSNGR----LIKATLPYIKDDIDIVI 81
Query: 228 VMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALEYIGKL-VAPGQA 283
V RALG+ D++I++ + ND ++ ++L +E+A I + AL+YIGK G +
Sbjct: 82 VFRALGVLADREILEHICFDPNDHQMLELLKPCIEEAFVIQEKDLALDYIGKRGQTTGLS 141
Query: 284 REYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANK 343
R+ R++ A ++ LLPH+ + RKA++LG M +++ ++L +R++DD+DH+ K
Sbjct: 142 RDRRIRHAREIMQKELLPHVSQTEGYESRKAFFLGYMVHRLLLVALERREQDDRDHFGKK 201
Query: 344 RLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTER 403
RL LAG LL +LFR+ F +L KD+ M +K V N + +++ +T+
Sbjct: 202 RLDLAGPLLANLFRMLFKKLYKDVYRYM--------QKCVENNREFNLTLAVKAPTITQG 253
Query: 404 IEHALATGAW------PGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHG 457
++++LATG W + GVSQ+L+R + STLSHLRR +P+ R+ + R LH
Sbjct: 254 LKYSLATGNWGEQKKAAQAKVGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHN 313
Query: 458 THWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPS--PE 515
+HWG +CP ETPEG CGLVKNLALM+ I+ P + E+L G+ +E PS P
Sbjct: 314 SHWGLVCPAETPEGQACGLVKNLALMSYISVGGPSAPLIEFLEEWGMESLEDYSPSSTPN 373
Query: 516 LWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRP 575
++++NGV +G D +LV ++ RR IS I + RE+ + +D GRV RP
Sbjct: 374 TTKIFVNGVWLGVHRDAGSLVNTVRNLRRRVDISPEITIVRDIRERELRLFTDAGRVMRP 433
Query: 576 LIIVENGKPK-------LTKEHVQAIKEG----------RLKWSDLVRMGVIEYLDAEEE 618
L IV+N + L ++HV+ I E R +S L+ G+IEY+DAEEE
Sbjct: 434 LFIVDNDEHSPRKNFLMLQRQHVETINEHKDNPEIPDHERWNFSKLIENGIIEYIDAEEE 493
Query: 619 ENAYVAM-------WP-----WEVTEE-----------------HTHLELMPAAILGLPA 649
E A +AM W +++ EE +TH E+ P+ ILG+ A
Sbjct: 494 ETAMIAMTRKDLESWRKMKEGFQIEEEFDPASRVEPPPNPNIAMYTHCEIHPSMILGVCA 553
Query: 650 SLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVG 709
S+IP+P+HN +PRNTY + M KQ++G+ N+++R+DT ++L+YPQ PL +R M+ +
Sbjct: 554 SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYQLRMDTMANILYYPQKPLATTRSMEYLK 613
Query: 710 YEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDK 769
+ D PAGQN +VA+L Y GYN ED++I+N++SI+RGL RS F+R Y +EKK ++
Sbjct: 614 FRDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMFYRCYNDQEKKIGMQVMEE 673
Query: 770 FEIPS--PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSL 827
FE P+ T+R G Y L+EDGLI P +V G+D++IG+T+P + S
Sbjct: 674 FEKPTRQTTLRLKHGT--YEKLEEDGLIAPGIRVSGEDIIIGKTAPISPDTQELGQRTSH 731
Query: 828 QERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIG 887
+R+ S +R +E G+VD V++T +G K VKV +R R+P+IGDKFASRHGQKG IG
Sbjct: 732 HTKRDVSTPLRSTENGIVDHVVVTTNQEGLKFVKVRMRSTRVPQIGDKFASRHGQKGTIG 791
Query: 888 LIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEP 947
+ EDMP++ G+VPDLI+NPH IPSRMTV L+E KV+A+ G D T F
Sbjct: 792 ITYRHEDMPFSAQGVVPDLIINPHAIPSRMTVAHLIECQLSKVSAMGGYEGDATPFTEVT 851
Query: 948 EEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPV 1007
E++ ++L GF+ G E+MY+G TGK+ A +F+G YYQRL HMV DKIHAR+RGPV
Sbjct: 852 VEQVSQQLRNQGFQSRGFEVMYNGHTGKKLMAQVFLGPTYYQRLKHMVDDKIHARARGPV 911
Query: 1008 QVLTKQPTEGRAREGGLRF 1026
Q+LT+QP EGR+R+GGLRF
Sbjct: 912 QILTRQPVEGRSRDGGLRF 930
>gb|AAF19072.1|AF107800_1 (AF107800) DNA-dependent RNA polymerase II RPB140 [Dothidea
insculpta]
Length = 936
Score = 646 bits (1649), Expect = 0.0
Identities = 366/928 (39%), Positives = 535/928 (57%), Gaps = 92/928 (9%)
Query: 171 IAPNRTLVEKDER-----QEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKF 225
+A R+ VEK R Q K +K S + G G + +P + +
Sbjct: 29 VAEIRSAVEKGSRLISSMQLKLFSKGDSQKGGL----------GGTIKATLPYIKSDIPI 78
Query: 226 VYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQ 282
V RALG+ D I+D + ND ++++++ LE+A I ++ AL++IGK
Sbjct: 79 AIVFRALGVVSDMQILDCICYDANDSQMREMIKPCLEEAFVIQDREVALDFIGKRGQQMG 138
Query: 283 AREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYAN 342
RE R++ A V+ LPHI RKA++LG M ++++ +LG+ +EDD+DH+
Sbjct: 139 TREXRIRYARDVMQKEFLPHISQKEGSETRKAFFLGYMINRLLQCALGRVEEDDRDHFGK 198
Query: 343 KRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTE 402
KRL LAG L+ +FR+ F+QL++D T+ Y R V G + +++ ++L+
Sbjct: 199 KRLDLAGPLMAQVFRLKFTQLIRD-----TRVYLSR---CVEGGKEFNLTLAVKANILSS 250
Query: 403 RIEHALATGAW------PGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLH 456
+ + LATG W + GVSQ+L+R Y STLSHLRR +P+ R+ + R LH
Sbjct: 251 GLRYCLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLH 310
Query: 457 GTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRP--SP 514
THWG +CP ETPEG CGLVKNL+LM ++ P E + E++ + +E P +P
Sbjct: 311 NTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPSEPIIEFMNQRNMELLEEYEPKNNP 370
Query: 515 ELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRR 574
+ +V++NGV +G D LV+ ++ RRSG IS I++ RE + +D GRV R
Sbjct: 371 DATKVFVNGVWVGVHRDPAQLVKVVQSLRRSGTISFEISLIRDVRDREFKIFTDAGRVMR 430
Query: 575 PLIIVEN-------GKPKLTKEHVQAIKEGR----------------LKWSDLVRMGVIE 611
PL +V+N G L + +++ ++ R W L+ G+IE
Sbjct: 431 PLFVVDNEPTSERRGHLVLARSNIERLQTDREMDLTGLSEEQRDSNIYGWKGLIGDGIIE 490
Query: 612 YLDAEEEENAYVAMWPWEVTEEH-------------------------------THLELM 640
YLDAEEEE A + M P ++ E TH E+
Sbjct: 491 YLDAEEEEAAMITMSPEDLDEHRQVRAGAPVYDDVGLDPHRRFKAKPNQSVRMWTHCEIH 550
Query: 641 PAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLV 700
PA ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ N+ +R+DT ++L+YPQ PL
Sbjct: 551 PAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVTLTNYNVRMDTMANVLYYPQKPLG 610
Query: 701 NSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEK 760
+R M+ + + + PAGQN +VA+ Y GYN ED++I+N++SI+RGL RS F+R Y +EK
Sbjct: 611 TTRSMEYLKFRELPAGQNAIVAIACYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEK 670
Query: 761 KYLGGQTDKFEIPS--PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLE 818
+ ++FE P+ T+R G Y LD+DG+I P S+V G+D++IG+T+P
Sbjct: 671 RVGMSVVEQFEKPTRADTLRMKHGT--YDKLDDDGIISPGSRVSGEDIIIGKTAPMAPDA 728
Query: 819 ERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFAS 878
E L +R+ S +R +E G++D+V++T DG K VKV R +IP+IGDKFAS
Sbjct: 729 EELGQRTKLHVKRDVSTPLRSTESGIIDQVLLTTNIDGHKFVKVRTRTTKIPQIGDKFAS 788
Query: 879 RHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRV 938
RHGQKG IG+ QEDMP+T G+VPDLI+NPH IPSRMT+ L+E + KV AL+G+
Sbjct: 789 RHGQKGTIGVTYRQEDMPFTADGLVPDLIINPHAIPSRMTIAHLIECLLSKVGALRGQEG 848
Query: 939 DGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADK 998
D T F ++ L GF+ G EIMY+G TGK+ A +F+G YYQRL HMV DK
Sbjct: 849 DATPFTDVTITQVSDLLRAHGFQQRGFEIMYNGHTGKKQVAQVFLGPTYYQRLRHMVDDK 908
Query: 999 IHARSRGPVQVLTKQPTEGRAREGGLRF 1026
IHAR+RGP Q+LT+QP EGRAR+GGLRF
Sbjct: 909 IHARARGPXQILTRQPVEGRARDGGLRF 936
>gb|AAF19057.1|AF107785_1 (AF107785) DNA-dependent RNA polymerase II RPB140 [Agaricus bisporus]
Length = 914
Score = 645 bits (1647), Expect = 0.0
Identities = 371/925 (40%), Positives = 546/925 (58%), Gaps = 70/925 (7%)
Query: 161 SERVIVSIEDIAPNRTLVEKDERQE--KYIAKVFS-YRHGYRALVTVERK------KDGI 211
SE+V+++ E +A N V + ++A++ S G + + + K + +
Sbjct: 1 SEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQERSV 60
Query: 212 LYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVG---NDPEVQQILFDNLEDASDITTQQ 268
+ IP + + V R LG+ D+DI++ + D ++ ++L ++D I ++
Sbjct: 61 SFTTIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDRE 120
Query: 269 EALEYIGKL-VAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIEL 327
AL++IG G +RE R++ A+ ++ +LPH+ ++ +KAY+ G M +++
Sbjct: 121 VALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLA 180
Query: 328 SLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNI 387
+L +R+ DD+DH+ KRL LAG LL +LFR+ F +L KD+ + K + E
Sbjct: 181 ALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFN----- 235
Query: 388 HRFIRNSIRPDVLTERIEHALATGAWP------GGRTGVSQLLDRTNYVSTLSHLRRVTS 441
+ +++ +T ++++LATG W + GVSQ+L+R Y STLSHLRR +
Sbjct: 236 ---LALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 292
Query: 442 PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMS 501
PL RE + R LH THWG +CP ETPEG CGLVKNLALM+ I+ V E+L
Sbjct: 293 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 352
Query: 502 LGIVPIEVRRPSPE-LWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDV 560
G+ +E S +V++NGV +G D LV+ IKK RR IS ++V
Sbjct: 353 WGLESLEENAHSTSPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRE 412
Query: 561 REVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEG------RLKWSDLVRMGVIEYLD 614
+E+ + +D GRV RPL IVEN + L K H++ + G KW L++ GVIE LD
Sbjct: 413 KELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGSDDEGNEYKWEQLIKGGVIELLD 472
Query: 615 AEEEENAYVAMWPWEV----------------------------TEEH--THLELMPAAI 644
AEEEE ++M P ++ T H TH E+ P+ I
Sbjct: 473 AEEEETVMISMTPEDLENSRLQAAGVDPHANDGDFDPAARLKAGTHAHTWTHCEIHPSMI 532
Query: 645 LGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRI 704
LG+ AS+IP+P+HN +PRNTY + MAKQ++G+ NF IR+DT ++L+YPQ PL +R
Sbjct: 533 LGICASIIPFPDHNQSPRNTYQSAMAKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRS 592
Query: 705 MKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLG 764
M+ + + + PAGQN +VA+L Y GYN ED++I+N++SI+RGL RS ++R+Y EKK
Sbjct: 593 MEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSYMDLEKKSGI 652
Query: 765 GQTDKFEIPS--PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSP-PRFLEERG 821
Q ++FE P+ T+R G Y L++DGLI P + V G+D++IG+T+P P EE G
Sbjct: 653 QQLEEFEKPTRDTTLRMKHGT--YDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELG 710
Query: 822 LGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHG 881
RR+ S ++ +E G+VD+V+IT +G K VKV VR RIP+IGDKFAS HG
Sbjct: 711 -QRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASCHG 769
Query: 882 QKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGT 941
QKG +G+ QEDMP+T GIVPDLI+NPH IPSRMT+G L+E + KVA L G D T
Sbjct: 770 QKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSKVATLIGNEGDAT 829
Query: 942 AFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHA 1001
F E + L + G++ G E+MY G TG++ +A I++G YYQRL HMV DKIH+
Sbjct: 830 PFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLGPTYYQRLKHMVDDKIHS 889
Query: 1002 RSRGPVQVLTKQPTEGRAREGGLRF 1026
R+RGPVQ+LT+QP EGR+R+GGLRF
Sbjct: 890 RARGPVQILTRQPVEGRSRDGGLRF 914
>gb|AAF19074.1|AF107802_1 (AF107802) DNA-dependent RNA polymerase II RPB140 [Botryosphaeria
rhodina]
Length = 942
Score = 645 bits (1646), Expect = 0.0
Identities = 366/952 (38%), Positives = 544/952 (56%), Gaps = 97/952 (10%)
Query: 162 ERVIVSIEDIAPNRTLV-EKDERQEKYIAKVFS-YRHGYRALVTVERK--------KDG- 210
++V+++ E A N V K + +IA++ S G R L ++ K K+G
Sbjct: 1 DKVLIAQERSAANIVQVFRKRQSPTPWIAEIRSAVEKGSRLLSSMTLKLYEKPQLWKEGQ 60
Query: 211 --ILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDIT 265
LY +P V V V RALG+ D+DI+ + ND ++ + + ++E++ I
Sbjct: 61 GACLYATLPYVKADVPIPIVFRALGIVSDEDIISHICFDKNDTQLMEAIRPSIEESVLIQ 120
Query: 266 TQQEALEYIGKL---VAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMAL 322
+ AL++IG+ + G + R+K A +I LPHI + +KA++LG M
Sbjct: 121 DRVSALDFIGRRGSNPSTGGTKRERVKLARDIIQKEFLPHISQAEGSETKKAFFLGYMIY 180
Query: 323 KVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKY 382
++++ LG+RDEDD+DH+ KRL LAG LL +LFR F +L +D+ + K G +
Sbjct: 181 RLLQCHLGRRDEDDRDHFGKKRLDLAGPLLANLFRSLFLKLTRDV-FSYLKKCVEAGRPF 239
Query: 383 VFGNIHRFIRNSIRPDVLTERIEHALATGAW------PGGRTGVSQLLDRTNYVSTLSHL 436
++++++ +T ++++LATG W + GVSQ+L+R Y STLSHL
Sbjct: 240 S-------LQSAVKQGTITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYSSTLSHL 292
Query: 437 RRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVK 496
RR +P+ R+ + R LH THWG +CP ETPEG CGLVKNL+LM +T ++
Sbjct: 293 RRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCNVTVGSDVTPIQ 352
Query: 497 EYLMSLGIVPIEVRRP--SPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINV 554
+++ + +E P SP ++++NGV +G D LV +KK RR G +S +++
Sbjct: 353 DFMTQRNMELLEEYEPNVSPHATKIFINGVWVGVHRDPTQLVSVVKKLRRDGTLSPEMSL 412
Query: 555 AYYEDVREVYVNSDDGRVRRPLIIVEN-------GKPKLTKEHVQAIK------------ 595
RE + +D GRV RPL I+++ G LT+EH+ ++
Sbjct: 413 IRDVRDREFKIFTDAGRVCRPLFIIDDDPFSPNKGNLALTREHIDKLEADQEIDVSGLSD 472
Query: 596 ----EGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEH----------------- 634
E R W L+ GV+EY+DAEEEE A + M P ++ H
Sbjct: 473 EERQEKRYGWQGLLHSGVVEYMDAEEEEVAMIVMTPDDLRAHHRARQGIIDEDDEETKRN 532
Query: 635 ------------------THLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGL 676
TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+
Sbjct: 533 RDPHERVVPPPNPSVKQYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGV 592
Query: 677 GWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAII 736
N+ +R+DT ++L+YPQ PL +R M+ + + + PAGQN +VA+ Y GYN ED++I
Sbjct: 593 CLTNYELRMDTMVNVLYYPQKPLATTRSMEYLRFRELPAGQNAIVAIACYSGYNQEDSVI 652
Query: 737 INKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIP--SPTVRGYRGEKYYRHLDEDGL 794
+N++SI+RGL RS F+R+Y +EKK ++FE P S T+R G Y LD+DG+
Sbjct: 653 MNQSSIDRGLFRSLFYRSYTDQEKKVGMAVVEQFEKPMRSDTMRLKHGT--YDKLDDDGV 710
Query: 795 IFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETG 854
+ P +V G+D++IG+T+P E + +R+ S +R +E G+VD V++T
Sbjct: 711 VAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKMHIKRDVSTPLRSTENGIVDSVLLTTNS 770
Query: 855 DGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIP 914
DG K VKV R +IP+IGDKFASRHGQKG IG+ EDMP+T G+ PDLI+NPH IP
Sbjct: 771 DGLKFVKVRTRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGLTPDLIINPHAIP 830
Query: 915 SRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITG 974
SRMT+ L+E + KV AL+G D T F ++ L E G++ G EIMY+G TG
Sbjct: 831 SRMTIAHLIECLLSKVGALRGXEGDATPFTDVTVXQVSSLLREHGYQSRGFEIMYNGHTG 890
Query: 975 KRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRF 1026
K+ A +F+G YYQRL HMV DKIHAR+RGPVQ+LT+QP EGRAR+GGLRF
Sbjct: 891 KKLTAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 942
>gb|AAF19078.1|AF107806_1 (AF107806) DNA-dependent RNA polymerase II RPB140 [Microglossum
viride]
Length = 938
Score = 642 bits (1637), Expect = 0.0
Identities = 358/880 (40%), Positives = 519/880 (58%), Gaps = 80/880 (9%)
Query: 216 IPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALE 272
+P + + V RALG+ D+DI++ + ND ++ ++L +E+A I ++ AL+
Sbjct: 70 LPYIKADIPIGIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALD 129
Query: 273 YIGKLV-APGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGK 331
YIGK A G R+ R+K A ++ LLPHI RKA++LG M K+++ +LG+
Sbjct: 130 YIGKRGNAMGLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGR 189
Query: 332 RDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDI-QYQMTKTYQRRGEKYVFGNIHRF 390
R+ DD+DH+ KRL LAG LL LFR F +L +D+ +Y R+ G
Sbjct: 190 RETDDRDHFGKKRLDLAGPLLAKLFRNLFKKLTQDLFKYTQRCVENRKEFNPALG----- 244
Query: 391 IRNSIRPDVLTERIEHALATGAW------PGGRTGVSQLLDRTNYVSTLSHLRRVTSPLD 444
I+ LT ++++LATG W GVSQ+L+R + STLSHLRR +P+
Sbjct: 245 ----IKSTTLTAGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIG 300
Query: 445 REQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGI 504
R+ + R LH THWG +CP ETPEG CGLVKNLALM +T P + + E+++ +
Sbjct: 301 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRSM 360
Query: 505 VPIEVRRP--SPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVRE 562
+E P SP +V++NGV +G D LV+ ++ RRS IS +++ RE
Sbjct: 361 EVLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVQTVRDLRRSHHISYEVSLIRDIRDRE 420
Query: 563 VYVNSDDGRVRRPLIIVEN-------GKPKLTKEHVQAIKE----------------GRL 599
+ +D GRV RPL +++N G L K H++ +++ G
Sbjct: 421 FKIFTDAGRVCRPLFVIDNDVSSKNKGNLVLNKGHIKRLEDDATLPLGLDLEEKQERGYF 480
Query: 600 KWSDLVRMGVIEYLDAEEEENAYVAMWP------------WEVTEEH------------- 634
+ L+ GV+EY+DAEEEE + M P +++ E++
Sbjct: 481 GFQGLIDEGVVEYVDAEEEETVMIVMTPEDLEISRQLQAGYQIQEDNSGELNRRVKAPMK 540
Query: 635 ------THLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTR 688
TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ NF R+DT
Sbjct: 541 PTAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTM 600
Query: 689 GHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLAR 748
++L+YPQ PL +R M+ + + + PAGQN +VA+L Y GYN ED++I+N++SI+RGL R
Sbjct: 601 ANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 660
Query: 749 STFFRTYEAEEKKYLGGQTDKFEIP--SPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDV 806
S FFR+Y +EK+ ++FE P + T++ G Y LD+DGL+ P +V G+D+
Sbjct: 661 SLFFRSYTDQEKRIGMNVVEQFEKPFRNDTLKLKHGT--YDKLDDDGLVAPGVRVSGEDI 718
Query: 807 LIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRD 866
+IG+T+P E +R+ S +R +E G+VD+V+IT +G + VKV +R
Sbjct: 719 IIGKTAPIAPDNEELGQRTKAHSKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRT 778
Query: 867 LRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAI 926
+IP+IGDKFASRHGQKG IG+I QEDMP+T GIVPDLI+NPH IPSRMT+ L+E
Sbjct: 779 TKIPQIGDKFASRHGQKGTIGIIYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQ 838
Query: 927 GGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVI 986
KVA+L G D T F + + K L E G++ G EIMY G TG++ A +F+G
Sbjct: 839 LSKVASLSGYEGDATPFTDVTVDNVSKLLREHGYQSRGFEIMYHGHTGRKLVAQVFLGPT 898
Query: 987 YYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRF 1026
YYQRL HMV DKIHAR+RGPVQ+LT+QP EGRAR+GGLRF
Sbjct: 899 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 938
>gb|AAF19079.1|AF107807_1 (AF107807) DNA-dependent RNA polymerase II RPB140 [Leotia viscosa]
Length = 938
Score = 640 bits (1633), Expect = 0.0
Identities = 356/880 (40%), Positives = 518/880 (58%), Gaps = 80/880 (9%)
Query: 216 IPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALE 272
+P + + V RALG+ D+DI++ + ND ++ ++L +E+A I ++ AL+
Sbjct: 70 LPYIKADIPMGIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALD 129
Query: 273 YIGKLV-APGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGK 331
YIGK A G R+ R+K A ++ LLPHI RKA++LG M K+++ +LG+
Sbjct: 130 YIGKRGNAMGLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGR 189
Query: 332 RDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDI-QYQMTKTYQRRGEKYVFGNIHRF 390
R+ DD+DH+ KRL LAG LL LFR F +L +D+ +Y R+ G
Sbjct: 190 RETDDRDHFGKKRLDLAGPLLAKLFRNLFKKLTQDLFKYTQRCVENRKEFNPALG----- 244
Query: 391 IRNSIRPDVLTERIEHALATGAW------PGGRTGVSQLLDRTNYVSTLSHLRRVTSPLD 444
I+ LT ++++LATG W GVSQ+L+R + STLSHLRR +P+
Sbjct: 245 ----IKSTTLTAGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIG 300
Query: 445 REQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGI 504
R+ + R LH THWG +CP ETPEG CGLVKNLALM +T P + + E+++ +
Sbjct: 301 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRSM 360
Query: 505 VPIEVRRP--SPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVRE 562
+E P SP +V++NGV +G D LV+ ++ RRS IS +++ RE
Sbjct: 361 EVLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVQTVRDLRRSHHISYEVSLIRDIRDRE 420
Query: 563 VYVNSDDGRVRRPLIIVEN-------GKPKLTKEHVQAIKE----------------GRL 599
+ +D GRV RPL +++N G L K H++ +++ G
Sbjct: 421 FKIFTDAGRVCRPLFVIDNDVNSKNKGNLVLNKGHIKRLEDDTTLPLGLDLEEKQERGYF 480
Query: 600 KWSDLVRMGVIEYLDAEEEENAYVAMWP------------WEVTEEH------------- 634
+ L+ GV+EY+DAEEEE + M P +++ E++
Sbjct: 481 GFQGLIDEGVVEYVDAEEEETVMIVMTPEDLEISRQLQAGYQIQEDNSGELNRRVKAPMK 540
Query: 635 ------THLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTR 688
TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ NF R+DT
Sbjct: 541 PTAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMDTM 600
Query: 689 GHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLAR 748
++L+YPQ PL +R M+ + + + PAGQN +VA+L Y GYN ED++I+N++SI+RGL R
Sbjct: 601 ANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 660
Query: 749 STFFRTYEAEEKKYLGGQTDKFEIP--SPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDV 806
S FFR+Y +EK+ ++FE P + T++ G Y LD+DGL+ P +V G+D+
Sbjct: 661 SLFFRSYTDQEKRIGMNVVEQFEKPFRNDTLKLKHGT--YDKLDDDGLVAPGVRVSGEDI 718
Query: 807 LIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRD 866
+IG+T+P E +R+ S +R +E G+VD+V+IT +G + VKV +R
Sbjct: 719 IIGKTAPIAPDNEELGQRTKAHSKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRT 778
Query: 867 LRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAI 926
++P+IGDKFASRHGQKG IG+ QEDMP+T GIVPDLI+NPH IPSRMT+ L+E
Sbjct: 779 TKVPQIGDKFASRHGQKGTIGITYKQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQ 838
Query: 927 GGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVI 986
KVA+L G D T F + + K L E G++ G EIMY G TG++ A +F+G
Sbjct: 839 LSKVASLSGYEGDATPFTDVTVDNVSKLLREHGYQSRGFEIMYHGHTGRKLTAQVFLGPT 898
Query: 987 YYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRF 1026
YYQRL HMV DKIHAR+RGPVQ+LT+QP EGRAR+GGLRF
Sbjct: 899 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 938
>gb|AAF19081.1|AF107809_1 (AF107809) DNA-dependent RNA polymerase II RPB140 [Peziza
quelepidotia]
Length = 927
Score = 637 bits (1624), Expect = 0.0
Identities = 361/919 (39%), Positives = 535/919 (57%), Gaps = 84/919 (9%)
Query: 171 IAPNRTLVEKDER-----QEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKF 225
+A R+ VEK R Q K K+ S R GY + +P + +
Sbjct: 30 VAEIRSAVEKGSRLISSMQIKMFGKMDS-RGGYGQTIKST----------LPYIKSDIPV 78
Query: 226 VYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALEYIGKL-VAPG 281
V RALG+ D+DI++ V ND ++ +L LE+A I ++ AL++IG+ + G
Sbjct: 79 AIVFRALGVIPDEDILNHVCYDRNDVQMLDMLKPCLEEAFVIQKREIALDFIGRRGSSSG 138
Query: 282 QAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYA 341
A++ R++ A ++ LPHI RKA++LG M +++ +L +++ DD+DH+
Sbjct: 139 VAKDKRVRYAREILQKEFLPHISQKEGSETRKAFFLGYMVHQMLLCALERKEPDDRDHFG 198
Query: 342 NKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLT 401
KRL LAG LL LFR F +L KD+ + K + E + +++ +T
Sbjct: 199 KKRLDLAGPLLAGLFRTLFKKLTKDVYKYLQKCVESSREFN--------LTLAVKSTTIT 250
Query: 402 ERIEHALATGAW------PGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDL 455
++++LATG W R GVSQ+L+R + STLSHLR +P+ R+ + R L
Sbjct: 251 NGLKYSLATGNWGEQKKAASARAGVSQVLNRYTFASTLSHLRGTNTPIGRDGKIAKPRQL 310
Query: 456 HGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPS-- 513
H THWG +CP ETPEG CGLVKNLALM+ ++ P + + ++++ + +E PS
Sbjct: 311 HNTHWGLVCPAETPEGQACGLVKNLALMSYVSVGSPADPIIDFMLQRNMEVLEEYEPSRS 370
Query: 514 PELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVR 573
P ++++NGV +G D +V I+K RR I +++ RE + +D GR+
Sbjct: 371 PNATKIFVNGVWVGIHRDPGFIVRTIQKLRRQNHIGHEVSLIQDIRNREFKIFTDAGRIC 430
Query: 574 RPLIIVEN-------GKPKLTKEHVQAIK--------EGRLKWSDLVRMGVIEYLDAEEE 618
RPL +V+N G+ L K H++ ++ E R W L+ GV+EY+DAEEE
Sbjct: 431 RPLFVVDNDPASPRRGELVLQKHHIEKLEDDKDITDDEQRYGWQGLISDGVVEYIDAEEE 490
Query: 619 ENAYVAMWP------------WEVTEE-----------------HTHLELMPAAILGLPA 649
E + M P +E+ +E TH E+ P+ ILG+ A
Sbjct: 491 ETVMIVMTPEDLETSRQFHAGYEIQQEIDPAQRVKAAVNKYAHTWTHCEIHPSMILGICA 550
Query: 650 SLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVG 709
S+IP+P+HN +PRNTY + M KQ++G+ N+R R+DT ++L+YPQ PL +R M+ +
Sbjct: 551 SIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYRERMDTMANILYYPQKPLGTTRSMEFLK 610
Query: 710 YEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDK 769
+ + PAGQN +VA+L Y GYN ED++I+N++SI+RGL RS FFRTY +EK+ ++
Sbjct: 611 FRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRTYMDQEKRIGMSVVEE 670
Query: 770 FEIPSP--TVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSL 827
FE P+ T+R G Y LD+DGL+ P +V G+D++IG+T+P +E
Sbjct: 671 FEKPTRGNTLRLKHGT--YDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPNQEELGQRTKF 728
Query: 828 QERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIG 887
+R+ S +R +E G+VD+V++T +G K VKV +R +IP+IGDKFASRHGQKG IG
Sbjct: 729 HTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 788
Query: 888 LIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEP 947
+ EDMP+T GIVPDLI+NPH IPSRMT+ L+E KV++L+G D T F
Sbjct: 789 ITYRNEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPFTDVT 848
Query: 948 EEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPV 1007
+ + K L E G++ G EIMY+G TG++ A +F+G YYQRL HMV DKIHAR+RGPV
Sbjct: 849 VDSVSKLLREHGYQSRGFEIMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPV 908
Query: 1008 QVLTKQPTEGRAREGGLRF 1026
Q+LT+QP EGRAR+GGLRF
Sbjct: 909 QILTRQPVEGRARDGGLRF 927
>gb|AAF19073.1|AF107801_1 (AF107801) DNA-dependent RNA polymerase II RPB140 [Didymella
bryoniae]
Length = 940
Score = 635 bits (1620), Expect = 0.0
Identities = 344/926 (37%), Positives = 537/926 (57%), Gaps = 84/926 (9%)
Query: 171 IAPNRTLVEKDERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMR 230
IA R+ VEK R + F+ + +L + +R Y +P + V V R
Sbjct: 29 IAEIRSAVEKGTR----LISSFNIKWAENSLASGKRMPGPFAYATLPYIKADVPMAIVFR 84
Query: 231 ALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYR 287
+LG+ D++I+ + D ++ ++L ++E+ S + ++ AL++I + A ++ R
Sbjct: 85 SLGIVSDEEILGHIVYDRTDTQMLELLKPSIEEGSVVQDRESALDFIARRGATQGTKDRR 144
Query: 288 LKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRL 347
LK A ++ LPHI RKAY+ G M ++++ LG+RDEDD+DH+ KRL L
Sbjct: 145 LKFARDIMQREFLPHISQREGQDTRKAYFFGYMIHRMLQCVLGRRDEDDRDHFGKKRLDL 204
Query: 348 AGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHA 407
AG L+ +LFR+ F +L KD+ + ++ V N ++ +++ ++T ++++
Sbjct: 205 AGPLIANLFRILFLKLTKDVYKYL--------QRCVENNSDFNVQMAVKASIITNGLKYS 256
Query: 408 LATGAW------PGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWG 461
LATG W + GVSQ+L+R Y STLSHLRR +P+ R+ + R LH +HWG
Sbjct: 257 LATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWG 316
Query: 462 RICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEV--RRPSPELWRV 519
+CP ETPEG CGLVKNL+LM ++ + +++ + +E + +P+ +V
Sbjct: 317 LVCPAETPEGQACGLVKNLSLMCYVSVGSDATPIADFMGKRNMQLLEEYDQNQNPDATKV 376
Query: 520 YLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIV 579
++NGV +G + + LV +++ RR+G +S +++ RE + +D GRV RPL +V
Sbjct: 377 FVNGVWVGVHNNAQQLVSTVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVV 436
Query: 580 ENGKPKLTKEHV--------QAIKEGRLK----------------WSDLVRMGVIEYLDA 615
+N K + H+ + ++E + + W L++ GVIEYLDA
Sbjct: 437 QNDVTKDDRNHLVFNQDHYNKLVQEQQAQATAGIGEEEKTALTYGWKGLIQDGVIEYLDA 496
Query: 616 EEEENAYVAMWPWEVTE---------------------------------EHTHLELMPA 642
EEEE A + M P ++ E +TH E+ PA
Sbjct: 497 EEEETAMIVMSPEDLGEWRDMKQGIPQDARNPQGKDRLARIKPKPDPRIHAYTHCEIHPA 556
Query: 643 AILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNS 702
ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ N+ +R++T ++L+YPQ PL +
Sbjct: 557 MILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATT 616
Query: 703 RIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKY 762
R M+ + + + PAGQN +VA+ Y GYN ED++I+N++SI+RGL RS F+R Y +EK+
Sbjct: 617 RSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRI 676
Query: 763 LGGQTDKFEIPS--PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEER 820
++FE P+ T+R G Y LD+DG++ P +V G D++IG+T+P +
Sbjct: 677 GVNVLEQFEKPTRADTLRLKGGT--YDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQE 734
Query: 821 GLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRH 880
SL +R+ S +R +E G+VD+V+ T +G + VKV R ++P+IGDKFASRH
Sbjct: 735 MGQKTSLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRH 794
Query: 881 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDG 940
GQKG IG+ EDMP+T G+ PDL++NPH IPSRMT+ L+E + KV A+ GR D
Sbjct: 795 GQKGTIGITYRHEDMPFTRDGVTPDLVINPHAIPSRMTIAHLVECLLSKVGAITGREGDA 854
Query: 941 TAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIH 1000
T F +++ + LE+ G++ G EIMY+G TGK+ IF+G YYQRL HMV DKIH
Sbjct: 855 TPFTDVTVDQISELLEDAGYQKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIH 914
Query: 1001 ARSRGPVQVLTKQPTEGRAREGGLRF 1026
AR+RGP+Q+LT+QP EGRAR+GGLRF
Sbjct: 915 ARARGPLQILTRQPVEGRARDGGLRF 940
>gb|AAF19082.1|AF107810_1 (AF107810) DNA-dependent RNA polymerase II RPB140 [Morchella elata]
Length = 927
Score = 633 bits (1616), Expect = e-180
Identities = 360/936 (38%), Positives = 547/936 (57%), Gaps = 79/936 (8%)
Query: 161 SERVIVSIEDIAPNRTLVEKDERQEK--YIAKVFS-YRHGYRALVTVERKK--------- 208
SE+V+++ E A N V K Y+A++ S G R + +++ K
Sbjct: 1 SEKVLIAQERSAANIVQVFKKALPSPTPYVAEIRSAVEKGSRLISSMQIKLYSKGEARGG 60
Query: 209 -DGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDI 264
+ + +P + + V V RALG+ D+DI++ V ND ++ +++ +E+A I
Sbjct: 61 YNATIKSTLPYIKSDIPIVIVFRALGVVSDEDILNHVCYDRNDTQMLEMMKPCIEEAFVI 120
Query: 265 TTQQEALEYIGKL-VAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALK 323
++ AL++IGK + G +E R++ A ++ LLPHI S RKA++LG M +
Sbjct: 121 QDREVALDFIGKRGSSQGINKEKRIRYARDIMQKELLPHISQSEGSETRKAFFLGYMVHR 180
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
+++ +L +R+ DD+DH+ KRL LAG LL LFR + +L KD+ + K + G+ +
Sbjct: 181 MLQCALERREVDDRDHFGKKRLDLAGPLLAGLFRTLWKKLTKDVYKYLEKCVET-GKDFN 239
Query: 384 FGNIHRFIRNSIRPDVLTERIEHALATGAW------PGGRTGVSQLLDRTNYVSTLSHLR 437
+ +++ + +T ++++LATG W + GVSQ+L+R + STLSHLR
Sbjct: 240 -------LTLAVKSNTITNGLKYSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLR 292
Query: 438 RVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKE 497
R +P+ R+ + R LH THWG +CP ETPEG CGLVKNL+LM+ IT P + +
Sbjct: 293 RTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYITIGTPGYPLVD 352
Query: 498 YLMSLGIVPIEVRRP--SPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVA 555
+L S + +E P SP +V++NGV +GT D L + ++ RR G ++ +++
Sbjct: 353 FLSSNDMELLEEYEPQRSPNATKVFVNGVWVGTHRDPLMLHKVVQDVRRQGVVNHEVSII 412
Query: 556 YYEDVREVYVNSDDGRVRRPLIIVEN-------GKPKLTKEHVQAIK-------EGRLKW 601
RE + +D GRV RPL +++N G+ L KEH++ ++ E R W
Sbjct: 413 RDIRDREFKIFTDAGRVCRPLFVIDNDPRSERRGQLVLQKEHIEKLEDDHALPMEDRFGW 472
Query: 602 SDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEH--------------------------- 634
L+ G +EYLDAEEEE + M P ++
Sbjct: 473 EGLLFGGTVEYLDAEEEETVMIVMTPEDLDMSRQMQLGYEEPKDEFSAKRVKAPINPHTA 532
Query: 635 ---THLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHL 691
TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ NF R+DT ++
Sbjct: 533 HTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFAERMDTMANI 592
Query: 692 LHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTF 751
L+YPQ PL +R M+ + + + PAGQN +VA+L Y GYN ED++I+N++SI+RGL RS F
Sbjct: 593 LYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLF 652
Query: 752 FRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRT 811
+R+Y +EK+ ++FE P+ Y LDEDGL+ P +V G+D++IG+T
Sbjct: 653 YRSYMDQEKRIGMQVVEEFEKPTRANTLKLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKT 712
Query: 812 SP-PRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIP 870
+P ++E G +R+ S +R +E G+VD+V++T +G K VKV +R +IP
Sbjct: 713 APIAPDVDEMGQRQ-KFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIP 771
Query: 871 EIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKV 930
+IGDKFASRHGQKG +G+ QEDMP+T GIVPDLI+NPH IPSRMT+ L+E KV
Sbjct: 772 QIGDKFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQLSKV 831
Query: 931 AALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQR 990
++L+G D T F E + L + G++ G E+MY+G TG++ +F+G YYQR
Sbjct: 832 SSLRGFEGDATPFTDVTVESVSTLLRQNGYQSRGFEVMYNGYTGRKLVCQVFLGPTYYQR 891
Query: 991 LHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRF 1026
L HMV DKIHAR+RGPVQ+LT+QP EGRAR+GGLRF
Sbjct: 892 LRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 927
>gb|AAF19075.1|AF107803_1 (AF107803) DNA-dependent RNA polymerase II RPB140 [Curvularia
brachyspora]
Length = 942
Score = 633 bits (1616), Expect = e-180
Identities = 348/928 (37%), Positives = 536/928 (57%), Gaps = 86/928 (9%)
Query: 171 IAPNRTLVEKDERQEKYIAKVFSYRHGYRALVTVERKKDG-ILYVGIPNVPKPVKFVYVM 229
IA R+ VEK R + F+ + +L ++ G Y +P + V V
Sbjct: 29 IAEIRSAVEKGTR----LISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVF 84
Query: 230 RALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREY 286
RALG+ D++I+ + D ++ ++L ++E+ S + ++ AL++I K A ++
Sbjct: 85 RALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEGSVVQDRETALDFIAKRGANSGTKDR 144
Query: 287 RLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLR 346
RLK A ++ LPHI RKAY+ G M ++++ LG+RDEDD+DH+ KRL
Sbjct: 145 RLKFARDIMQREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLD 204
Query: 347 LAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEH 406
LAG L+ +LFR+ F +L KD+ + ++ V N ++ +++ ++T +++
Sbjct: 205 LAGPLIANLFRILFLKLTKDVYKYL--------QRCVENNQDFNVQMAVKASIITNGLKY 256
Query: 407 ALATGAW------PGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHW 460
+LATG W + GVSQ+L+R Y STLSHLRR +P+ R+ + R LH +HW
Sbjct: 257 SLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHW 316
Query: 461 GRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEV--RRPSPELWR 518
G +CP ETPEG CGLVKNL+LM ++ + +++ + +E + +P+ +
Sbjct: 317 GLVCPAETPEGQACGLVKNLSLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDATK 376
Query: 519 VYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLII 578
V++NGV +G + + LV +++ RR+G +S +++ RE + +D GRV RPL +
Sbjct: 377 VFVNGVWVGVHSNAQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFV 436
Query: 579 VENGKPKLTKEHVQAIKE--GRLK-----------------------WSDLVRMGVIEYL 613
VEN K + H+ KE +LK W L++ GV+EYL
Sbjct: 437 VENDIRKPNRNHLIFTKEISNKLKAEQSETSTRQGWSQEEVEQATYGWRGLIQDGVVEYL 496
Query: 614 DAEEEENAYVAMWPWEVTE---------------------------------EHTHLELM 640
DAEEEE A + P ++ E +TH E+
Sbjct: 497 DAEEEETAMITFSPEDLEEWREMKMGLPAAERSTEGKDRLRRLKPLPDPRIHSYTHCEIH 556
Query: 641 PAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLV 700
PA ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ NF +R++T ++L+YPQ PL
Sbjct: 557 PAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLA 616
Query: 701 NSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEK 760
+R M+ + + + PAGQN +VA+ Y GYN ED++I+N++SI+RGL RS F+R Y +EK
Sbjct: 617 TTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEK 676
Query: 761 KYLGGQTDKFEIPS--PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLE 818
+ ++FE P+ T+R G Y LD+DG++ P +V G D++IG+T+P
Sbjct: 677 RIGVNVLEQFEKPTRADTLRLKGGT--YDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADA 734
Query: 819 ERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFAS 878
+ ++ +R+ S +R +E G+VD+V+ T +G + VKV R ++P+IGDKFAS
Sbjct: 735 QELGQKTTMHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFAS 794
Query: 879 RHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRV 938
RHGQKG IG+ QEDMP+T G+ PDLI+NPH IPSRMT+ L+E + KV A+ G+
Sbjct: 795 RHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEG 854
Query: 939 DGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADK 998
D T F +++ + LE+ G++ G EIMY+G TGK+ IF+G YYQRL HMV DK
Sbjct: 855 DATPFTDVTVDQISQLLEDAGYQKRGFEIMYNGHTGKKLRTQIFLGPTYYQRLRHMVDDK 914
Query: 999 IHARSRGPVQVLTKQPTEGRAREGGLRF 1026
IHAR+RGP+Q+LT+QP EGRAR+GGLRF
Sbjct: 915 IHARARGPLQILTRQPVEGRARDGGLRF 942
>gb|AAF19064.1|AF107792_1 (AF107792) DNA-dependent RNA polymerase II RPB140 [Microascus
trigonosporus]
Length = 937
Score = 631 bits (1611), Expect = e-179
Identities = 369/948 (38%), Positives = 536/948 (55%), Gaps = 93/948 (9%)
Query: 161 SERVIVSIEDIAPNRTLVEKDERQE--KYIAKVFS-YRHGYRALVTVERK---------- 207
SE+VI++ E A N V K + Y A++ S G R + + +
Sbjct: 1 SEKVIIAQERSAANIVQVFKKAQPSPYSYTAEIRSALEKGSRLISQLALRLYSKGGRGAS 60
Query: 208 -KDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASD 263
I++ +P V + + RA G+ D+DI++ + ND ++ ++L +E++
Sbjct: 61 SSGAIVHATLPYVREETPIALIFRAYGVVSDEDILNHICYDRNDSQMLEMLKPCIEESFV 120
Query: 264 ITTQQEALEYIGKLVAPGQ---AREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMM 320
+ ++ AL++IGK G R+ R++ A+ ++ LPHI + RKA++LG M
Sbjct: 121 VQDREVALDHIGKRGQQGGFALTRDKRIRTAKEILQKETLPHISQAEGSETRKAFFLGYM 180
Query: 321 ALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGE 380
K+++ +LG+RD DD+DH+ KRL LAG LL LFR ++ ++ M Q
Sbjct: 181 VHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLSKLFRNIMRRMNTELTSYMKMCIQN--- 237
Query: 381 KYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGR------TGVSQLLDRTNYVSTLS 434
N + I IR LT ++++LATG W + GVSQ+L+R + STLS
Sbjct: 238 -----NRNFQISQGIRITTLTNGMKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLS 292
Query: 435 HLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEE 494
HLRR +P+ R+ + R LH THWG +CP ETPEG CGLVKNL+LM ++ P +
Sbjct: 293 HLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTPTDP 352
Query: 495 VKEYLMSLGIVPIEVRRPS--PELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDII 552
++E+++ + +E P P +V++NG +G ++ + L+E + K RR +
Sbjct: 353 IEEFMIDREMEIVEEYEPLRFPNATKVFVNGAWVGVHQEPQRLMEEMIKARRVNSFPAEV 412
Query: 553 NVAYYEDVREVYVNSDDGRVRRPLIIV----------ENGKPKLTKEHVQAIKEGR---- 598
++ RE V SD GRV RP+ +V + G L+KE V + E R
Sbjct: 413 SLVRDIRDREFKVFSDAGRVMRPVFVVNRENNEYEGVQKGTLVLSKEQVAQLTEERDLPT 472
Query: 599 ----LKWSDLVRMGVIEYLDAEEEENAYVAMWPWEV------------------------ 630
LKW DLVR G +EYLDAEEEE A + M P ++
Sbjct: 473 EQRKLKWEDLVRSGAVEYLDAEEEETAMICMTPEDLELFRQTKVEGHQVPPPNINDEPNR 532
Query: 631 ---------TEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANF 681
T +TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G N+
Sbjct: 533 RLKTDLNPTTYTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNY 592
Query: 682 RIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKAS 741
R+DT ++L+YPQ PL + M+ + + + PAGQN +VA+ Y GYN ED++I+N++S
Sbjct: 593 MRRMDTMANILYYPQKPLATTMAMEHLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSS 652
Query: 742 IERGLARSTFFRTYEAEEKKYLGGQTDKFEIP--SPTVRGYRGEKYYRHLDEDGLIFPES 799
I+RGL RS FFR+Y EK+ ++FE P S T+R G Y LDEDG++ P
Sbjct: 653 IDRGLFRSLFFRSYTDCEKRVGINLLEQFEKPFRSETLRLKHGT--YDKLDEDGIVAPGV 710
Query: 800 KVEGKDVLIGRTSPPRFLEERGLGAVSLQE-RRETSVAVRPSERGVVDKVIITETGDGTK 858
+V G+D++IG+TSP E + LG + Q +R+ S +R +E G+VD V+ T DG K
Sbjct: 711 RVSGEDIIIGKTSPLS-PESQELGQRTTQHTQRDASTPLRSTESGIVDSVVFTTNADGMK 769
Query: 859 LVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMT 918
VKV VR ++P+IGDKFASRHGQKG IG+ QEDMP+T GI PD+I+NPH IPSRMT
Sbjct: 770 YVKVRVRTTKVPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGITPDIIINPHAIPSRMT 829
Query: 919 VGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFE 978
+ L+E + KVA LKG D T F + + L G+ G EIMY+G TGK+
Sbjct: 830 IAHLIECLLSKVATLKGLEGDATPFTDVTVDSVSALLRAEGYHSRGFEIMYNGHTGKKLR 889
Query: 979 ADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRF 1026
A +F G YYQRL HMV DKIHAR+RGPVQ++T+QP EGRAR+GGLRF
Sbjct: 890 AQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRF 937
>gb|AAF19077.1|AF107805_1 (AF107805) DNA-dependent RNA polymerase II RPB140 [Sporormiella
minima]
Length = 937
Score = 628 bits (1602), Expect = e-178
Identities = 349/921 (37%), Positives = 532/921 (56%), Gaps = 85/921 (9%)
Query: 175 RTLVEKDERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGL 234
R+ VEK R + F+ + +++ V+R+ Y +P + V V RALG+
Sbjct: 33 RSAVEKGTR----LISSFNIKWTDNSMI-VKRQPGPFAYAVLPYIKADVPMAIVFRALGI 87
Query: 235 ERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRA 291
D+DI++ + ND ++ ++L ++E+ + I ++ AL++I + ++ RLK A
Sbjct: 88 VSDEDILNHIVYDRNDTQMLELLKPSIEEGAMIQERETALDWIARRGNQTGTKDKRLKFA 147
Query: 292 EYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDL 351
++ LPHI RKA++ G M ++++ LG+RDEDD+DH+ KRL LAG L
Sbjct: 148 REIMQREFLPHISQKEGQDTRKAFFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPL 207
Query: 352 LKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATG 411
+ +LFR+ F +L KD+ + K E +++ ++T ++++LATG
Sbjct: 208 IANLFRILFLKLTKDMFNYLRKCVDAEQEFNA--------TLALKASIVTNGLKYSLATG 259
Query: 412 AW------PGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICP 465
W + GVSQ+L+R Y STLSHLRR +P+ R+ + R LH THWG +CP
Sbjct: 260 NWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNTHWGLVCP 319
Query: 466 TETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRP--SPELWRVYLNG 523
ETPEG CGLVKNL+LM ++ + +++ + +E P +P +V++NG
Sbjct: 320 AETPEGQACGLVKNLSLMCYVSVGNESAPIIDFMSQRNMDLLEEYDPIQNPTATKVFVNG 379
Query: 524 VIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGK 583
+G + LV +++ RR+G +S +++ RE + +D GRV RPL +VE
Sbjct: 380 TWVGVHSNPSQLVSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVETNY 439
Query: 584 PK-------LTKEHVQAIK----------------EGRLKWSDLVRMGVIEYLDAEEEEN 620
K LTK H++ ++ E + W L+ GV+EYLDAEEEE
Sbjct: 440 NKPNRGSLVLTKAHIEKLQADKEIDTSGMNDEDTAERKYGWFGLIHDGVVEYLDAEEEEG 499
Query: 621 AYVAMWPWEVTEE--------------------------------HTHLELMPAAILGLP 648
A + M P ++ E +TH E+ P+ ILG+
Sbjct: 500 AMIIMSPEDLDEHRDLMQGTQTQEDKEDNDRHKRIKPKPNPSIKTYTHCEIHPSMILGIC 559
Query: 649 ASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAV 708
AS+IP+P+HN +PRNTY + M KQ++G+ N+ +R++T ++L+YPQ PL +R M+ +
Sbjct: 560 ASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSMEYL 619
Query: 709 GYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTD 768
+ + PAGQN +VA+ Y GYN ED++I+N++SI+RGL RS F+R Y +EK+ +
Sbjct: 620 RFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLE 679
Query: 769 KFEIPS--PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSP-PRFLEERGLGAV 825
+FE P+ T+R G Y LD+DG++ P +V G D++IG+T+P P +E G
Sbjct: 680 QFEKPTRQDTLRLKGGT--YDKLDDDGVVAPGVRVSGDDIIIGKTAPIPGDAQELGQKTQ 737
Query: 826 SLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGV 885
+ +R+ S +R +E G+VD+V+ T +G + VKV R ++P+IGDKFASRHGQKG
Sbjct: 738 N-HTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGT 796
Query: 886 IGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIG 945
IG+ QEDMP+T G+ PDLI+NPH IPSRMT+ L+E + KV +LKG D T F
Sbjct: 797 IGITYRQEDMPFTREGLTPDLIINPHAIPSRMTIAHLVECLLSKVGSLKGAEGDATPFTD 856
Query: 946 EPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRG 1005
E + K L E G++ G E+MY+G TGK+ A +F+G YYQRL HMV DKIHAR+RG
Sbjct: 857 VTVESVSKLLVEHGYQQRGFEVMYNGHTGKKLRAQVFLGPTYYQRLRHMVDDKIHARARG 916
Query: 1006 PVQVLTKQPTEGRAREGGLRF 1026
P+Q+LT+QP EGRAR+GGLRF
Sbjct: 917 PLQILTRQPVEGRARDGGLRF 937
>gb|AAF19076.1|AF107804_1 (AF107804) DNA-dependent RNA polymerase II RPB140 [Pleospora tarda]
Length = 942
Score = 626 bits (1598), Expect = e-178
Identities = 345/928 (37%), Positives = 534/928 (57%), Gaps = 86/928 (9%)
Query: 171 IAPNRTLVEKDERQEKYIAKVFSYRHGYRALVTVERKKDG-ILYVGIPNVPKPVKFVYVM 229
IA R+ VEK R + F+ + +L ++ G Y +P + V V
Sbjct: 29 IAEIRSAVEKGTR----LISSFNIKWAENSLAGHGKRIPGPFAYATLPYIKADVPMAIVF 84
Query: 230 RALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREY 286
RALG+ D++I+ + D ++ ++L ++E+ S + ++ AL++I K A ++
Sbjct: 85 RALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEGSVVQDRETALDFIAKRGANSGTKDR 144
Query: 287 RLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLR 346
RLK A ++ LPHI RKAY+ G M ++++ LG+RDEDD+DH+ KRL
Sbjct: 145 RLKFARDIMQREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLD 204
Query: 347 LAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEH 406
LAG L+ +LFR+ F +L KD+ + ++ V N ++ +++ ++T +++
Sbjct: 205 LAGPLIANLFRILFLKLTKDVYKYL--------QRCVENNQDFNVQMAVKASIITNGLKY 256
Query: 407 ALATGAW------PGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHW 460
+LATG W + GVSQ+L+R Y STLSHLRR +P+ R+ + R LH +HW
Sbjct: 257 SLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHW 316
Query: 461 GRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEV--RRPSPELWR 518
G +CP ETPEG CGLVKNL+LM ++ + +++ + +E + +P+ +
Sbjct: 317 GLVCPAETPEGQACGLVKNLSLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDATK 376
Query: 519 VYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLII 578
V++NGV +G + + LV +++ RR+G +S +++ RE + +D GRV RPL +
Sbjct: 377 VFVNGVWVGVHSNAQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFV 436
Query: 579 VENG---------------KPKLTKEHVQA----------IKEGRLKWSDLVRMGVIEYL 613
VEN KL E + ++ W L++ GV+EYL
Sbjct: 437 VENDFRRENRNQLVFTKAISNKLKAEQQETSTRQGWSQEEVENATYGWRGLIQDGVVEYL 496
Query: 614 DAEEEENAYVAMWPWEVTE---------------------------------EHTHLELM 640
DAEEEE A + P ++ E +TH E+
Sbjct: 497 DAEEEETAMITFSPEDLEEWREMKMGLPAVERSTEGKDRLRRLKPAPDPRIHAYTHCEIH 556
Query: 641 PAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLV 700
PA ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ NF +R++T ++L+YPQ PL
Sbjct: 557 PAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVALTNFALRMETMMNVLYYPQKPLA 616
Query: 701 NSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEK 760
+R M+ + + + PAGQN +VA+ Y GYN ED++I+N++SI+RGL RS F+R Y +EK
Sbjct: 617 TTRSMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEK 676
Query: 761 KYLGGQTDKFEIPS--PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLE 818
+ ++FE P+ T+R G Y LD+DG++ P +V G D++IG+T+P
Sbjct: 677 RIGVNVLEQFEKPTRADTLRLKGGT--YDKLDDDGVVAPGVRVSGDDIIIGKTAPIATDA 734
Query: 819 ERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFAS 878
+ +L +R+ S +R +E G+VD+V+ T +G + VKV R ++P+IGDKFAS
Sbjct: 735 QELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFAS 794
Query: 879 RHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRV 938
RHGQKG IG+ QEDMP+++ G+ PDLI+NPH IPSRMT+ L+E + KV A+ G+
Sbjct: 795 RHGQKGTIGITYRQEDMPFSKEGLTPDLIINPHAIPSRMTIAHLVECLLSKVGAITGQEG 854
Query: 939 DGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADK 998
D T F +++ + LE+ G++ G EIMY+G TGK+ IF+G YYQRL HMV DK
Sbjct: 855 DATPFTDVTVDQVSQLLEDAGYQKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDK 914
Query: 999 IHARSRGPVQVLTKQPTEGRAREGGLRF 1026
IHAR+RGP+Q+LT+QP EGRAR+GGLRF
Sbjct: 915 IHARARGPLQILTRQPVEGRARDGGLRF 942
>gb|AAF19080.1|AF107808_1 (AF107808) DNA-dependent RNA polymerase II RPB140 [Sclerotinia
sclerotiorum]
Length = 938
Score = 626 bits (1597), Expect = e-178
Identities = 357/948 (37%), Positives = 542/948 (56%), Gaps = 92/948 (9%)
Query: 161 SERVIVSIEDIAPNRTLVEKDERQE--KYIAKVFS-YRHGYRALVTVERK--------KD 209
SE+V+++ E A N V K + Y+A++ S G R + +++ K +
Sbjct: 1 SEKVLIAQERSAANIVQVFKKPANQAVSYLAEIRSALEKGSRLISSLQIKLYDKGDSGRG 60
Query: 210 GI---LYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASD 263
G + +P + + + V RALG+ D+DI++ + ND ++ ++L +E+A
Sbjct: 61 GFGKTVKSTLPYIKQDIPIAIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFV 120
Query: 264 ITTQQEALEYIGKLV-APGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMAL 322
I ++ AL++IGK R+ R+K A ++ LLPHI RKA++LG M
Sbjct: 121 IQDREVALDFIGKRGNGTSLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYMVH 180
Query: 323 KVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKY 382
K+++ +LG+R+ DD+DH+ KRL LAG LL LFR F +L D+ + ++
Sbjct: 181 KLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFRRLTTDVYRYL--------QRC 232
Query: 383 VFGNIHRFIRNSIRPDVLTERIEHALATGAW------PGGRTGVSQLLDRTNYVSTLSHL 436
V N + ++ +T ++++LATG W GVSQ+L+R + STLSHL
Sbjct: 233 VENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHL 292
Query: 437 RRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVK 496
RR +P+ R+ + R LH THWG +CP ETPEG CGLVKNLALM +T P + +
Sbjct: 293 RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIV 352
Query: 497 EYLMSLGIVPIEVRRP--SPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINV 554
E+++ + +E P +P +V++NGV +G D LV+ ++ RRS IS +++
Sbjct: 353 EFMIQRNMEVLEEYEPLRAPNATKVFVNGVWVGVHRDPAHLVKCVQDLRRSHLISHEVSL 412
Query: 555 AYYEDVREVYVNSDDGRVRRPLIIVEN-------GKPKLTKEHVQAIKE----------- 596
RE + +D GRV RPL++++N G L K+H++ +++
Sbjct: 413 IREIRDREFKIFTDAGRVCRPLLVIDNDPDSPNKGNLVLNKDHIRRLEDDQSLPSNMDKD 472
Query: 597 -----GRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEH----------------- 634
G + L+ GV+EYLDAEEEE + M P ++
Sbjct: 473 EKVHHGYYGFQGLINDGVVEYLDAEEEETVMITMTPEDLDISRQLQAGYQIRPDDSGDLN 532
Query: 635 --------------THLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWAN 680
TH E+ P+ ILG+ AS+IP+P+HN +PRN Y + M KQ++G+ N
Sbjct: 533 KRVKAPINPTAHVWTHCEIHPSMILGICASIIPFPDHNQSPRNCYQSAMGKQAMGVFLTN 592
Query: 681 FRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKA 740
F +R+DT ++L+YPQ PL +R M+ + + + PAGQN +VA++ Y GYN ED++I+N++
Sbjct: 593 FDVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQS 652
Query: 741 SIERGLARSTFFRTYEAEEKKYLGGQTDKFEIP--SPTVRGYRGEKYYRHLDEDGLIFPE 798
SI+RGL RS F+R Y +EK+ ++FE P S T++ +G Y LD+DG++ P
Sbjct: 653 SIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPYRSDTLKLKQGT--YEKLDDDGIVAPG 710
Query: 799 SKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTK 858
+V G D++IG+T+P E +R+ S +R +E G+VD+V++T +G +
Sbjct: 711 VRVTGADIIIGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLLTTNAEGLR 770
Query: 859 LVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMT 918
VKV +R +IP+IGDKFASRHGQKG IG+ Q+DMP+T G+VPDLI+NPH IPSRMT
Sbjct: 771 FVKVRMRTTKIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMT 830
Query: 919 VGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFE 978
+ L+E KV++L+G D T F + + K L G+ G EIMY G TG++
Sbjct: 831 IAHLIECQLSKVSSLRGLEGDATPFTEVTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMM 890
Query: 979 ADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRF 1026
A +F+G YYQRL HMV DKIHAR+RGPVQ+LT+QP EGRAR+GGLRF
Sbjct: 891 AQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 938
>gb|AAF19062.1|AF107790_1 (AF107790) DNA-dependent RNA polymerase II RPB140 [Podospora
anserina]
Length = 934
Score = 626 bits (1596), Expect = e-178
Identities = 352/878 (40%), Positives = 509/878 (57%), Gaps = 76/878 (8%)
Query: 214 VGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEA 270
V +P V + V V RALG+ D+DI++ + D ++ + L +E+A I ++ A
Sbjct: 68 VTLPYVREDVSLAIVFRALGIVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDREIA 127
Query: 271 LEYIGKLVAP--GQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELS 328
L++IGK GQ R R++ A+ ++ +LPHI + RKA++LG M K+++ +
Sbjct: 128 LDFIGKRGNGNMGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVNKLLQCA 187
Query: 329 LGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIH 388
LG+RD DD+DH+ KRL LAG LL LFR ++ +D+ M + N H
Sbjct: 188 LGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCLDT--------NKH 239
Query: 389 RFIRNSIRPDVLTERIEHALATGAWPGGR------TGVSQLLDRTNYVSTLSHLRRVTSP 442
+ I+ + LT ++++LATG W + GVSQ+L+R + STLSHLRR +P
Sbjct: 240 FTLALGIKANTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTP 299
Query: 443 LDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSL 502
+ R+ + R LH THWG +CP ETPEG CGLVKNL+LM ++ P + + +++ +
Sbjct: 300 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVDFMTAR 359
Query: 503 GIVPIEVRRP--SPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDV 560
G+ +E P +P +V++NG +G D K LV ++ RR IS +++
Sbjct: 360 GMDVLEEYEPLRAPNATKVFVNGTWVGVHNDPKQLVTLVQDLRRKNVISFEVSLVRDIRE 419
Query: 561 REVYVNSDDGRVRRPLII----------VENGKPKLTKEHVQAIKEGR---------LKW 601
RE + SD GRV RPL VE G+ L K+H+ ++ + W
Sbjct: 420 REFKIFSDAGRVMRPLFTVEQEEKGNHGVEKGQLILNKDHIARLQRDKELGKYHPDYWGW 479
Query: 602 SDLVRMGVIEYLDAEEEENAYVAMWPWEV------------------------------T 631
L++ G IEYLDAEEEE + M P ++ T
Sbjct: 480 QGLLKSGAIEYLDAEEEETTMICMTPQDLDDFRMTKLGFHIETTSGQGNNRIRTKVNKTT 539
Query: 632 EEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHL 691
+TH E+ PA +LG+ AS+IP+P+HN +PRNTY + M KQ++G N+ R+DT ++
Sbjct: 540 HMYTHCEIHPAMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANI 599
Query: 692 LHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTF 751
L+YPQ PL +R M+ + + + PAGQN +VA+L Y GYN ED++++N++SI+RG+ RS F
Sbjct: 600 LYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVVMNQSSIDRGIFRSLF 659
Query: 752 FRTYEAEEKKYLGGQTDKFEIPS--PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIG 809
FR+Y EK+ + FE P+ T+R G Y LD DG+I P +V G+D++IG
Sbjct: 660 FRSYTDCEKRVGINIVEMFEKPTRGDTLRLKHGT--YDKLDADGIIAPGIRVSGEDIIIG 717
Query: 810 RTSPPRFLEERGLGAVSLQE-RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLR 868
+TSP + LG Q +R+ S +R +E G+VD V++T DG + VKV VR +
Sbjct: 718 KTSPIN-PDNAELGQRQQQHVKRDASTPLRSTESGIVDSVVLTTNQDGMRYVKVRVRTTK 776
Query: 869 IPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGG 928
IP+IGDKFASRHGQKG IGL EDMP+T GI PD+I+NPH IPSRMT+ L+E +
Sbjct: 777 IPQIGDKFASRHGQKGTIGLTYRMEDMPFTAEGITPDIIINPHAIPSRMTIAHLVECLLS 836
Query: 929 KVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYY 988
KVA LKG D T F + + L E G++ G EI+Y G TG++ A F G YY
Sbjct: 837 KVATLKGLEGDATPFTDVTVDSVSDLLREQGYQSRGFEILYHGHTGRKLRAQCFFGPTYY 896
Query: 989 QRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRF 1026
QRL HMV DKIHAR+RGPVQ++T+QP EGRAR+GGLRF
Sbjct: 897 QRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRF 934
>gb|AAF19068.1|AF107796_1 (AF107796) DNA-dependent RNA polymerase II RPB140 [Exophiala
jeanselmei]
Length = 937
Score = 620 bits (1581), Expect = e-176
Identities = 346/887 (39%), Positives = 516/887 (58%), Gaps = 78/887 (8%)
Query: 207 KKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASD 263
K D + V +P V + + V V RAL + D DI++ + +D E+ +L +L++
Sbjct: 62 KIDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMLDMLMGSLQEGQP 121
Query: 264 ITTQQEALEYIGKLV-APGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMAL 322
I + A ++I + P R K A ++ LPHIG P+ +KA++LG M
Sbjct: 122 IQSADLARDFIARRGNIPTLKSHERQKHAIDILQKEFLPHIGQGPDVATKKAFFLGYMVN 181
Query: 323 KVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKY 382
++++ +LG+ + DD+DH KRL LAG L+ +LFR+ F + KD M Q+R E
Sbjct: 182 RLLKAALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFFRYM----QKRVEAG 237
Query: 383 VFGNIHRFIRNSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTLSHL 436
+IH ++ I +T ++++LATG W + GVSQ+L R + STLSHL
Sbjct: 238 QPISIHAGFKHPI----ITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHL 293
Query: 437 RRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVK 496
RR +P+ RE + R LH THWG +CP ETPEG CGLVKNL+LM+ +T + E ++
Sbjct: 294 RRTNAPIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNSYETEPLR 353
Query: 497 EYLMSLGIVPIEVRRP--SPELWRVYLNGVIIGTI-EDGKALVERIKKDRRSGKISDIIN 553
Y+++ + IE P +P+ +++++GV + D K LV+ +++ RR G ++
Sbjct: 354 AYVLNKHVDAIEEWEPRLNPQATKIFIDGVWFAVVLRDPKRLVDDLRRLRRQGTFDAQVS 413
Query: 554 VAYYEDVREVYVNSDDGRVRRPLIIVENGKPK-------LTKEHVQAIKEGR-LK----- 600
+ + +E ++ D GR+ RPL +VE K L KEH+ + + LK
Sbjct: 414 LVWDIREKEFRISGDSGRIIRPLFVVETDKASENVGNLVLNKEHINKLDQTNYLKESGYQ 473
Query: 601 ---------WSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEH----------------- 634
W DL++ GV+EYLDAEEEE A + M P + +
Sbjct: 474 FNDEVSAYGWDDLLKAGVVEYLDAEEEETAMIVMTPEVLADSKARWLGIEIENFDDPLGR 533
Query: 635 ------------THLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFR 682
TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ NF
Sbjct: 534 NEPLLTPNSHSFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFD 593
Query: 683 IRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASI 742
R++T ++L+YPQ PL + M + + + PAGQN +VA+ Y GYN ED++I+N++SI
Sbjct: 594 QRMETMANILYYPQKPLARTMAMDYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSI 653
Query: 743 ERGLARSTFFRTYEAEEKKYLGGQTDKFEIPS--PTVRGYRGEKYYRHLDEDGLIFPESK 800
+RGL RS F+R Y+ +EK + FE P+ T+R G Y +DEDG++ P +
Sbjct: 654 DRGLFRSLFYRAYQDQEKSVGHAVIESFEKPTRADTLRLKHGT--YDKIDEDGIVAPGVR 711
Query: 801 VEGKDVLIGRTSPPRFLEERGLGAVSLQE-RRETSVAVRPSERGVVDKVIITETGDGTKL 859
V G+D+++G+T+P E LG Q +R+ S +R +E G+VD+V++T T DG +
Sbjct: 712 VSGEDIIMGKTAPMAPDAEE-LGQRQKQHVKRDVSTPLRSTESGIVDQVMLTTTNDGHRF 770
Query: 860 VKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTV 919
KV VR ++P+IGDKFASRHGQKG IG+ EDMP+T GIVPDLI+NPH IPSRMT+
Sbjct: 771 AKVRVRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTI 830
Query: 920 GQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEA 979
L+E KVA L+G D T F ++ L ++G++ G E+MY+G TGK+ A
Sbjct: 831 AHLIECQLSKVATLRGEEGDATPFTKVTVTQISDILRKMGYQSRGFEVMYNGHTGKKLVA 890
Query: 980 DIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRF 1026
+F+G YYQRL HMV DKIH+R+RGP Q+LT+QP EGRAR+GGLRF
Sbjct: 891 QVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 937
>gb|AAF19070.1|AF107798_1 (AF107798) DNA-dependent RNA polymerase II RPB140 [Capronia
pilosella]
Length = 937
Score = 619 bits (1578), Expect = e-176
Identities = 346/885 (39%), Positives = 509/885 (57%), Gaps = 74/885 (8%)
Query: 207 KKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASD 263
K D + V +P V + + V V RAL + D DI++ + +D E+ +L +L++
Sbjct: 62 KIDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMMDMLMGSLQEGQA 121
Query: 264 ITTQQEALEYIGKLV-APGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMAL 322
I A ++I + P R K A ++ LPHIG P+ RKA++LG M
Sbjct: 122 IQGADLARDFIARRGNVPTLKSHERQKHATDILQKEFLPHIGQGPDATARKAFFLGYMVN 181
Query: 323 KVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKY 382
++++ +LG+ + DD+DH KRL LAG L+ +LFR+ F + KD + R +K
Sbjct: 182 RLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKD--------FYRYMQKR 233
Query: 383 VFGNIHRFIRNSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTLSHL 436
V N I + ++T ++++LATG W + GVSQ+L R + STLSHL
Sbjct: 234 VESNQPINIMAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHL 293
Query: 437 RRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVK 496
RR +P+ RE + R LH THWG +CP ETPEG CGLVKNL+LM+ +T +
Sbjct: 294 RRTNAPIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNTYETGPLL 353
Query: 497 EYLMSLGIVPIEVRRP--SPELWRVYLNGVIIGTI-EDGKALVERIKKDRRSGKISDIIN 553
Y+++ + +E P +P+ +V+++GV + D K LV+ ++K RR G ++
Sbjct: 354 NYILTKHVEALEDWEPRLNPQATKVFVDGVWFAVVLRDPKRLVDDLRKLRRKGVFDSQVS 413
Query: 554 VAYYEDVREVYVNSDDGRVRRPLIIVEN-------GKPKLTKEHVQA------IKEGRLK 600
+ + +E ++ D GR+ RPL IVE G L K+H+ +KEG +
Sbjct: 414 LVWDIRDKEFKISGDSGRIVRPLFIVETDRASENLGNLVLNKDHISKLDQTAYLKEGGFQ 473
Query: 601 ---------WSDLVRMGVIEYLDAEEEENAYVAMWP---------W---EVTEE------ 633
W+DL+ GV+EYLDAEEEE A + M P W E+ E
Sbjct: 474 WTDEIRPYGWNDLLESGVVEYLDAEEEETAMIIMTPEALSDSKAKWLGMEIENEDDPLRR 533
Query: 634 -----------HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFR 682
TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ NF
Sbjct: 534 NDPLLNPHSHTFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFD 593
Query: 683 IRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASI 742
R++T ++L+YPQ PL + M + + + PAGQN +VA+ Y GYN ED++I+N++SI
Sbjct: 594 QRMETMANILYYPQKPLARTMAMDYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSI 653
Query: 743 ERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVE 802
+RGL RS F+RTY+ EK ++FE P+ T Y +DEDG++ P +V
Sbjct: 654 DRGLFRSLFYRTYQDSEKSVGHSVMEQFEKPTRTDTLRLKHGTYDKIDEDGIVAPGVRVS 713
Query: 803 GKDVLIGRTSPPRFLEERGLGAVSLQE-RRETSVAVRPSERGVVDKVIITETGDGTKLVK 861
G+D+++G+T+ P + LG Q +R+ S +R +E G+VD+V++T T DG + K
Sbjct: 714 GEDIIMGKTA-PMAPDAEELGQRQKQHIKRDVSTPLRSTESGIVDQVMLTTTNDGHRFAK 772
Query: 862 VTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQ 921
V VR + P+IGDKFASRHGQKG IG+ EDMP+T GIVPDLI+NPH IPSRMT+
Sbjct: 773 VRVRTTKTPQIGDKFASRHGQKGTIGITYRTEDMPFTREGIVPDLIINPHAIPSRMTIAH 832
Query: 922 LLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADI 981
L+E KVA L+G D T F ++ L +G++ G E+MY+G TG++ A +
Sbjct: 833 LIECQLSKVATLRGDEGDATPFTKVTVTQVSDLLRRMGYQSRGFEVMYNGHTGRKLVAQV 892
Query: 982 FVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRF 1026
F+G YYQRL HMV DKIH+R+RGP Q+LT+QP EGRAR+GGLRF
Sbjct: 893 FLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 937
>gb|AAF19063.1|AF107791_1 (AF107791) DNA-dependent RNA polymerase II RPB140 [Chaetomium elatum]
Length = 934
Score = 619 bits (1578), Expect = e-176
Identities = 344/876 (39%), Positives = 510/876 (57%), Gaps = 72/876 (8%)
Query: 214 VGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEA 270
V +P V + V V RALG+ D+DI++ + D ++ + L +E+A I ++ A
Sbjct: 68 VTLPYVREDVSLGIVFRALGIVSDEDILNHICYDRTDTQMLEALRPCIEEAFCIQDREIA 127
Query: 271 LEYIGKLVA--PGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELS 328
L++IGK GQ R R++ A+ ++ +LPHI + RKA++LG M ++++ +
Sbjct: 128 LDFIGKRGNGNAGQNRMNRVRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHRLLQCA 187
Query: 329 LGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIH 388
LG+RD DD+DH+ KRL LAG LL LFR ++ +D+ M ++ + N +
Sbjct: 188 LGRRDPDDRDHFGKKRLDLAGPLLAKLFRNVIRRMTQDLMSYM--------KRCIDTNKN 239
Query: 389 RFIRNSIRPDVLTERIEHALATGAW------PGGRTGVSQLLDRTNYVSTLSHLRRVTSP 442
+ I+ LT ++++LATG W GVSQ+L+R + STLSHLRR +P
Sbjct: 240 FSLALGIKHSTLTNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTP 299
Query: 443 LDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSL 502
+ R+ + R LH THWG +CP +TPEG CGLVKNL+LM ++ P + + E++++
Sbjct: 300 IGRDGKLAKPRQLHNTHWGLVCPADTPEGQACGLVKNLSLMCYVSVGTPADPIVEFMIAR 359
Query: 503 GIVPIEVRRPS--PELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDV 560
G+ +E P P +V++NG +G +D K LV ++ RR IS +++
Sbjct: 360 GMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQGLRRKNVISFEVSLVRDIRD 419
Query: 561 REVYVNSDDGRVRRPLIIVEN----------GKPKLTKEHVQAIK----EGRLK-----W 601
RE + SD GRV RPL VE G L KEH+ +K G+ W
Sbjct: 420 REFKIFSDAGRVMRPLFTVEQEPNGESGAEKGALILNKEHIGKLKLDTEYGKYHPDYWGW 479
Query: 602 SDLVRMGVIEYLDAEEEENAYVAMWPWE------------------------------VT 631
L++ G IEYLDAEEEE + M P + +T
Sbjct: 480 QGLLKSGAIEYLDAEEEETVMICMTPQDLDQFRARKQGRFEQDNSGLGNNRIKTKPNPIT 539
Query: 632 EEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHL 691
+TH E+ P+ +LG+ AS+IP+P+HN +PRNTY + M KQ++G N+ R+DT ++
Sbjct: 540 HMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANI 599
Query: 692 LHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTF 751
L+YPQ PL +R M+ + + + PAGQN +VA+ Y GYN ED++I+N++SI+RG+ RS F
Sbjct: 600 LYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLF 659
Query: 752 FRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRT 811
FR+Y EK+ ++FE P+ + Y LD DG++ P +V G+D++IG+T
Sbjct: 660 FRSYTDCEKRVGINIVEQFEKPNRSDTLRLKHSTYDKLDADGIVAPGIRVSGEDIIIGKT 719
Query: 812 SPPRFLEERGLGAVSLQE-RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIP 870
P + LG S Q +R+ S +R +E G++D+V++T DG + VKV VR ++P
Sbjct: 720 CPIN-PDNAELGQRSNQHVKRDASTPLRSTESGIIDQVVVTTNQDGMRYVKVRVRTTKVP 778
Query: 871 EIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKV 930
+IGDKFASRHGQKG IG+ QEDMP+T GI PD+I+NPH IPSRMT+ L+E + KV
Sbjct: 779 QIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKV 838
Query: 931 AALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQR 990
+ LKG D T F + + L E G++ G EIMY G TG++ + +F G YYQR
Sbjct: 839 STLKGMEGDATPFTDVTVDSVSDLLREHGYQSRGFEIMYHGHTGRKLRSQVFFGPTYYQR 898
Query: 991 LHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRF 1026
L HMV DKIHAR+RGP+Q++T+QP EGRAR+GGLRF
Sbjct: 899 LRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRF 934
>pir||T43701 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[imported] - Caenorhabditis elegans (fragment)
>gi|520507|gb|AAA50224.1| (U10333) RNA polymerase II,
second largest subunit [Caenorhabditis elegans]
Length = 859
Score = 600 bits (1530), Expect = e-170
Identities = 329/801 (41%), Positives = 483/801 (60%), Gaps = 34/801 (4%)
Query: 216 IPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALE 272
+P + + + + V RALG D+DI+ + NDPE+ +++ +L++A I Q AL
Sbjct: 67 LPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEAFVIQEQNVALN 126
Query: 273 YIGKLVA-PGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGK 331
+IG A PG RE R+K A ++ LLPH+GVS +KA+++G M +++ +LG+
Sbjct: 127 FIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGR 186
Query: 332 RDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFI 391
R+ DD+DH NKRL LAG LL LFR F L+K+++ MT +KY+ N +
Sbjct: 187 RELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMR--MT------AQKYINKNDDFAL 238
Query: 392 RNSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTLSHLRRVTSPLDR 445
++ +T + ++LATG W R GVSQ+L+R Y +TLSHLRR SP+ R
Sbjct: 239 DVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGR 298
Query: 446 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIV 505
E + R LH T WG +CP ETPEG GLVKNLALMA I+ E + E+L +
Sbjct: 299 EGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSME 358
Query: 506 PIEVRRPSP--ELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVR-- 561
+E PS + ++++NG +G + L+ +KK RR I + V+ D+R
Sbjct: 359 NLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDII-VSEVSMVRDIRDR 417
Query: 562 EVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEG-----RLKWSDLVRMGVIEYLDAE 616
E+ + +D GRV RPL+IVEN K L K H+ +KE + WSDLV GV+E +D+
Sbjct: 418 EIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSM 477
Query: 617 EEENAYVAMWPWEVT-----EEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAK 671
EEE + +AM P ++ + HTH E+ PA ILG+ AS+IP+P+HN +PRNTY + M K
Sbjct: 478 EEETSMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGK 537
Query: 672 QSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNM 731
Q++G+ NF +R+DT H+L+YPQ PLV +R M+ + + + PAG N +VA+L+Y GYN
Sbjct: 538 QAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQ 597
Query: 732 EDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDE 791
ED++I+N ++I+RGL RS F+R+Y E + E P+ Y LDE
Sbjct: 598 EDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDE 657
Query: 792 DGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIIT 851
DG+I P +V G DV+IG+T +++ + +R+ S +R SE G+VD+V+++
Sbjct: 658 DGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGIVDQVMLS 717
Query: 852 ETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPH 911
DG K VK+ +R +R+P+IGDKFASRHGQKG +G++ QEDMP+T G+ PD+I+NPH
Sbjct: 718 LNSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPH 777
Query: 912 GIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE-EKLRKELEELGFKHTGREIMYD 970
+PSRMT+G L+E + GK++A KG D T F +K+ L E G+ G E+MY+
Sbjct: 778 AVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYN 837
Query: 971 GITGKRFEADIFVGVIYYQRL 991
G TGK+ IF G YYQRL
Sbjct: 838 GHTGKKLTTQIFFGPTYYQRL 858
>gb|AAC83398.1| (U10332) RNA polymerase II, second largest subunit [Artemia salina]
Length = 862
Score = 600 bits (1530), Expect = e-170
Identities = 330/804 (41%), Positives = 497/804 (61%), Gaps = 37/804 (4%)
Query: 216 IPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALE 272
+P + + + + V RALG D+DI++ + +DPE+ +++ +L++A I Q AL
Sbjct: 67 VPYIKQEIPIMIVFRALGFVADRDILEHIIYEFDDPEMMEMVKPSLDEAFVIQEQNVALN 126
Query: 273 YIGKLVA-PGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGK 331
+IG A PG ++ R+K A ++ +LPH+G+S +KAY+LG M +++ +LG+
Sbjct: 127 FIGARGARPGVTKDKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLLAALGR 186
Query: 332 RDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFI 391
R+ DD+DHY NKRL LAG L+ LFR F L K+++ K + RG+ + I
Sbjct: 187 RELDDRDHYGNKRLDLAGPLMSLLFRGLFKTLTKEVRMYAQK-FIDRGKDFN-------I 238
Query: 392 RNSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTLSHLRRVTSPLDR 445
+I+P +T+ ++++LATG W R GVSQ+L+R + STLSHLRRV SP+ R
Sbjct: 239 ELAIKPKFITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGR 298
Query: 446 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIV 505
+ + R LH T WG ICP ETPEG GLVKNLALMA I+ + E+L +
Sbjct: 299 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 358
Query: 506 PIEVRRPSP--ELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKI--SDIINVAYYEDVR 561
+E PS + ++++NG +G D + L+ ++K RR I S++ V +D R
Sbjct: 359 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMTTLRKLRRQMDIIVSEVSMVRDIQD-R 417
Query: 562 EVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKE---GRLKWSDLVRMGVIEYLDAEEE 618
E+ + +D GR+ RPL+IVEN + L K H++ +KE W+DLV GV+EY+D EE
Sbjct: 418 EIRIYTDAGRICRPLLIVENQRLLLKKTHIEQLKEKEYNNFVWNDLVASGVVEYVDTLEE 477
Query: 619 ENAYVAMWPWEVTEE-------HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAK 671
E A +AM P ++ + +TH E+ PA ILG+ AS+IP+P+HN +PRNTY + M K
Sbjct: 478 ETAMIAMAPDDIRLDNEGYCATYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGK 537
Query: 672 QSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNM 731
Q++G+ NF +R+DT H+L YPQ PLV +R M+ + + + PAG N +VA+L Y GYN
Sbjct: 538 QAMGVYITNFHVRMDTLAHVLCYPQKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQ 597
Query: 732 EDAIIINKASIERGLARSTFFRTY-EAEEKKYLGGQTDK-FEIPS-PTVRGYRGEKYYRH 788
ED++++N ++++RG RS FFR+Y +AE K+ + G +++ FE PS T +G + + Y
Sbjct: 598 EDSVLMNASAVDRGFFRSVFFRSYKDAETKRAMAGASEETFEKPSRDTCQGMKHPQSYDK 657
Query: 789 LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKV 848
LD DG+I P +V G DV+IG+T ++ A +R+ S +R SE G+ D+V
Sbjct: 658 LDNDGIIAPGIRVSGDDVVIGKTVTMPENDDELSSAAKRYSKRDCSTFLRNSETGITDQV 717
Query: 849 IITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIV 908
++T +G K K+ VR +RIP+IGDKFASRHGQKG G+ QEDMP++ G PD+I+
Sbjct: 718 MLTLNTEGFKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSAEGTAPDIII 777
Query: 909 NPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE-EKLRKELEELGFKHTGREI 967
NPH IPSRMT+G L+E I GKV+A KG D T F +K+ L++ G++ G E+
Sbjct: 778 NPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKISNLLQDYGYQLRGNEV 837
Query: 968 MYDGITGKRFEADIFVGVIYYQRL 991
MY+G TG++ + +F+G YYQRL
Sbjct: 838 MYNGFTGRKLVSQVFLGPTYYQRL 861
>gb|AAA50226.1| (U10335) RNA polymerase II, second largest subunit [Crassostrea
gigas]
Length = 859
Score = 599 bits (1529), Expect = e-170
Identities = 332/802 (41%), Positives = 492/802 (60%), Gaps = 36/802 (4%)
Query: 216 IPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALE 272
+P + + + + V RALG D+DI++ + +DPE+ +++ +L++A I Q AL
Sbjct: 67 LPYIKQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALN 126
Query: 273 YIGKLVA-PGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGK 331
+IG A PG +E R+K A ++ +LPH+GVS +KAY+LG M +++ ++G+
Sbjct: 127 FIGSRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAIGR 186
Query: 332 RDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFI 391
R+ DD+DHY NKRL LAG LL LFR F L+K+++ K + RG+ + +
Sbjct: 187 REVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRLYAQK-FIDRGKDFN-------L 238
Query: 392 RNSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTLSHLRRVTSPLDR 445
+I+ ++T+ ++++LATG W R GVSQ+L+R + STLSHLRR+ SP+ R
Sbjct: 239 ELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGR 298
Query: 446 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIV 505
+ R LH T WG ICP ETPEG GLVKNLALMA I+ + E+L +
Sbjct: 299 DGKLARPRQLHNTQWGMICPAETPEGSAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 358
Query: 506 PIEVRRPSP--ELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVR-- 561
+E PS + ++++NG +G D + L+ ++K RR I + V+ D+R
Sbjct: 359 NLEEVSPSAIQDATKIFVNGCWVGIHRDPEQLMNTLRKLRREMDII-VSEVSMIRDIRDR 417
Query: 562 EVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKE---GRLKWSDLVRMGVIEYLDAEEE 618
E+ + +D GR+ RPL+IVEN K L + H++ +K+ W DLV GV+EY+D EE
Sbjct: 418 EIRIYTDAGRICRPLLIVENQKLLLKQSHIKQLKQREYNNYSWQDLVASGVVEYIDPLEE 477
Query: 619 ENAYVAMWPWEVTEE-------HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAK 671
E+ +AM P +++++ +TH E+ PA ILG+ AS+IP+P+HN +PRNTY + M K
Sbjct: 478 ESIMLAMTPDDLSDKDVQYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGK 537
Query: 672 QSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNM 731
Q++G+ NF +R+DT H L YPQ PLV +R M+ + + + PAG N +VA+ +Y GYN
Sbjct: 538 QAMGVYITNFHVRMDTLAHGLLYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQ 597
Query: 732 EDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPS-PTVRGYRGEKYYRHLD 790
ED++IIN ++IERG RS FFR+Y+ E K Q + FE P+ V+G R + Y LD
Sbjct: 598 EDSVIINASAIERGFFRSFFFRSYKDSESKKGLDQEEIFEKPTRENVQGMR-QAVYDKLD 656
Query: 791 EDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVII 850
EDG+I P +V G DVLIG+T E+ G +R+ SV +R SE G++D+V+I
Sbjct: 657 EDGIISPGIRVSGDDVLIGKTLTLPANEDELEGTTKRFTKRDASVFMRRSETGIIDQVMI 716
Query: 851 TETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNP 910
T +G K K+ VR ++ P+IGDKFASRHGQKG G+ QEDMP+T GI PD+I+NP
Sbjct: 717 TLNQEGYKFCKIRVRTVKTPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGITPDIIINP 776
Query: 911 HGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE-EKLRKELEELGFKHTGREIMY 969
H +PSRMT+G L+E + GKVAA KG D T F +K+ L + G+ G E+++
Sbjct: 777 HAVPSRMTIGHLIECLQGKVAANKGEIGDATPFNDAVNVQKVSNLLHQYGYHQRGNEVLF 836
Query: 970 DGITGKRFEADIFVGVIYYQRL 991
+G TG++ A IF+G YYQRL
Sbjct: 837 NGFTGRKLNAQIFLGPTYYQRL 858
>gb|AAA50228.1| (U10337) RNA polymerase II, second largest subunit [Helobdella
stagnalis]
Length = 859
Score = 596 bits (1519), Expect = e-169
Identities = 334/814 (41%), Positives = 492/814 (60%), Gaps = 39/814 (4%)
Query: 207 KKDGI---LYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLED 260
KK GI + +P + + + + V RALG D+DI++ + +DPE+ +++ ++++
Sbjct: 55 KKVGIGQRIVAVLPYIKQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSIDE 114
Query: 261 ASDITTQQEALEYIG-KLVAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGM 319
A + Q AL +IG + PG RE R+K A+ ++ +LPH+G+S RKAY+LG
Sbjct: 115 AFCVQDQPVALNFIGGRGSRPGVTREKRIKYAKEILQKEMLPHVGISDFCETRKAYFLGY 174
Query: 320 MALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRG 379
M +++ +LG+R+ DD+DHY NKRL LAG LL LFR F L K+I+ K + RG
Sbjct: 175 MVHRLLLAALGRREVDDRDHYGNKRLDLAGPLLAYLFRGLFRNLSKEIRLYAQK-FIDRG 233
Query: 380 EKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTL 433
+ + + +I+ +T+ ++++LATG W R GVSQ+L+R + STL
Sbjct: 234 KDFN-------LELAIKTRTITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTL 286
Query: 434 SHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEE 493
SHLRR+ SP+ R+ R LH T WG ICP ETPEG GLVKNLALMA I+
Sbjct: 287 SHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGCAVGLVKNLALMAYISVGSQPS 346
Query: 494 EVKEYLMSLGIVPIEVRRPSP--ELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDI 551
+ E+L + +E PS + R+++NG +G D + L+ +KK RR I +
Sbjct: 347 PILEFLEEWSMENLEEISPSAIMDATRIFVNGCWVGIHRDPEQLMNTLKKLRRQMDII-V 405
Query: 552 INVAYYEDVR--EVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKE---GRLKWSDLVR 606
V+ D+R E+ + +D GR+ RPL+IVEN K L K H+ +KE W DLV
Sbjct: 406 SEVSVIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKRHIDLLKEREYNNYSWQDLVA 465
Query: 607 MGVIEYLDAEEEENAYVAMWPWEVTEE-------HTHLELMPAAILGLPASLIPYPEHNA 659
GV+EY+D EEE +AM P + E+ +TH E+ P+ ILG+ AS+IP+P+HN
Sbjct: 466 NGVVEYIDTMEEETVMLAMTPEDFIEKGGQYCSTYTHCEIHPSMILGICASIIPFPDHNQ 525
Query: 660 APRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNF 719
+PRNTY + M KQ++G+ N+ +R+DT H+L YPQ PLV +R M+ + + + PAG N
Sbjct: 526 SPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLFYPQKPLVTTRSMEYLKFRELPAGINS 585
Query: 720 VVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPT-VR 778
+ A+ +Y GYN ED++I+N+++++RG RS F+R+Y+ E K Q + FE P + V+
Sbjct: 586 ITAIASYTGYNQEDSVIMNESAVDRGFFRSVFYRSYKDAESKKGFDQEEVFEKPDRSYVQ 645
Query: 779 GYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVR 838
G R Y + LD+DG+I P ++V G D L+G+T E+ G +R+ SV +R
Sbjct: 646 GMRANSYDK-LDDDGIISPGTRVSGDDALVGKTISLPENEDELEGQARRYTKRDCSVFMR 704
Query: 839 PSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWT 898
SE GVV +V++T DG K K+ VR ++ P+IGDKFASRHGQKG G+ QEDMP+T
Sbjct: 705 KSETGVVGQVMVTINQDGFKFTKIRVRTVKTPQIGDKFASRHGQKGTCGMRYRQEDMPFT 764
Query: 899 ESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE-EKLRKELEE 957
GI PD+I+NPH IPSRMTVG L+E + GKVAA +G D T F K+ L+E
Sbjct: 765 AEGITPDIIINPHAIPSRMTVGHLIECLQGKVAANRGEIADATPFNDTVNVRKISDVLKE 824
Query: 958 LGFKHTGREIMYDGITGKRFEADIFVGVIYYQRL 991
G+ G E++Y+G TG++ + IF+G YYQRL
Sbjct: 825 YGYHMHGNEVLYNGHTGRKIVSQIFLGPTYYQRL 858
>gb|AAF19066.1|AF107794_1 (AF107794) DNA-dependent RNA polymerase II RPB140 [Byssochlamys
nivea]
Length = 905
Score = 576 bits (1469), Expect = e-163
Identities = 321/846 (37%), Positives = 483/846 (56%), Gaps = 78/846 (9%)
Query: 216 IPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALE 272
+P + + V V RALG+ D+DI++ + ND + ++L +E+ I ++ AL+
Sbjct: 70 LPYIKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALD 129
Query: 273 YIGKLVAPGQA--REYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLG 330
+I K + + E R++ A ++ LPHI S RKA++LG M ++++ +LG
Sbjct: 130 FISKRGSSQTSMNHERRVRYAREIMQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALG 189
Query: 331 KRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRF 390
+RD DD+DH+ KRL LAG LL LFR F+++ +D+Q + + + E Y+ NI
Sbjct: 190 RRDVDDRDHFGKKRLDLAGPLLATLFRTLFTRVTRDLQRYVQRCVETNREIYL--NI--- 244
Query: 391 IRNSIRPDVLTERIEHALATGAW------PGGRTGVSQLLDRTNYVSTLSHLRRVTSPLD 444
++ LT +++ALATG W + GVSQ+L R Y STLSHLRR +P+
Sbjct: 245 ---GVKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLSRYTYSSTLSHLRRTNTPIG 301
Query: 445 REQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGI 504
R+ + R LH THWG +CP ETPEG CGLVKNLALM IT P E + ++++ +
Sbjct: 302 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNM 361
Query: 505 VPIEVRRP--SPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVRE 562
+E P +P +V++NGV +G D LV ++ RR IS +++ RE
Sbjct: 362 EVLEEFEPQVTPNATKVFVNGVWVGIHRDPSHLVSTVQSLRRRNMISHEVSLVRDIRDRE 421
Query: 563 VYVNSDDGRVRRPLIIVEN-------GKPKLTKEHVQAIKEGR---------------LK 600
+ +D GRV RPL +++N G L KEH++ +++ +
Sbjct: 422 FKIFTDAGRVCRPLFVIDNDPKSENCGSLVLNKEHIRKLEQDKELPPDLSPEERRERYFG 481
Query: 601 WSDLVRMGVIEYLDAEEEENAYVAMWPWEV------------------------------ 630
W LVR GV+EY+DAEEEE + M P ++
Sbjct: 482 WDGLVRSGVVEYVDAEEEETIMIVMTPEDLEISKQLQAGYALPEDEGNDPNKRVRSVLSQ 541
Query: 631 -TEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRG 689
TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ NF R++T
Sbjct: 542 KAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMA 601
Query: 690 HLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARS 749
++L+YPQ PL +R M+ + + + PAGQN +VA+ Y GYN ED++I+N++SI+RGL RS
Sbjct: 602 NILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 661
Query: 750 TFFRTYEAEEKKYLGGQTDKFEIP--SPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVL 807
F+RTY EK ++FE P S T+ +G Y +DEDG+I P +V G+D++
Sbjct: 662 LFYRTYTDSEKMVGLTVVERFEKPMRSDTIGMRKGT--YDKIDEDGIIAPGVRVSGEDII 719
Query: 808 IGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDL 867
IG+T+P E + + S +R +E G+VD+V+++ + D K VKV +R
Sbjct: 720 IGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTT 779
Query: 868 RIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIG 927
+IP++GDKFASRHGQKG IG+ QEDMP+T GIVPDLI+NPH IPSRMT+ L+E
Sbjct: 780 KIPQVGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQL 839
Query: 928 GKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIY 987
KV++L+G D T F + + + L E G++ G E+MY+G TG++ A +F+G Y
Sbjct: 840 SKVSSLRGFEGDATPFTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTY 899
Query: 988 YQRLHH 993
YQRL H
Sbjct: 900 YQRLRH 905
>gb|AAF19061.1|AF107789_1 (AF107789) DNA-dependent RNA polymerase II RPB140 [Neurospora
crassa]
Length = 903
Score = 573 bits (1461), Expect = e-162
Identities = 333/847 (39%), Positives = 482/847 (56%), Gaps = 78/847 (9%)
Query: 214 VGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEA 270
V +P V + V V RALG+ D+DI++ + D ++ + L +E+A I ++ A
Sbjct: 68 VTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDSQMLEALRPCIEEAFCIQDREVA 127
Query: 271 LEYIGKLV--APGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELS 328
L+YIGK + G R R+K A+ ++ LLPHI + RKA++LG M K+++
Sbjct: 128 LDYIGKRGNGSTGINRNGRIKAAKEMLQKELLPHISQAEGCETRKAFFLGYMVHKLLQCV 187
Query: 329 LGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIH 388
LG+RD DD+DH+ KRL LAG LL LFR +L +D+ M ++ V N H
Sbjct: 188 LGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQDLMGYM--------KRCVDTNKH 239
Query: 389 RFIRNSIRPDVLTERIEHALATGAWPGGR------TGVSQLLDRTNYVSTLSHLRRVTSP 442
+ I+ LT ++++LATG W + GVSQ+L+R + STLSHLRR +P
Sbjct: 240 FSLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNTP 299
Query: 443 LDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSL 502
+ R+ + R LH THWG +CP ETPEG CGLVKNL+LM ++ + + E++++
Sbjct: 300 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIAR 359
Query: 503 GIVPIEVRRPS--PELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDV 560
+ +E P P +V++NG +G +D K LV ++ RR IS +++
Sbjct: 360 NMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQNLRRKNIISFEVSLVRDIRD 419
Query: 561 REVYVNSDDGRVRRPLIIVEN----------GKPKLTKEHVQAIKEGR---------LKW 601
RE + SD GRV RPL +VE G+ LTKEH++ +++ + W
Sbjct: 420 REFKIFSDAGRVMRPLFVVEQEDNSESGVEKGQLILTKEHIRRLEQDKELAKYHEDYFGW 479
Query: 602 SDLVRMGVIEYLDAEEEENAYVAMWPWEV------------------------------- 630
L+ G IEYLDAEEEE A + M P ++
Sbjct: 480 QGLLESGAIEYLDAEEEETAMICMTPEDLDTYRQHKFKGREFEDDAANRGNSRIKTKFNP 539
Query: 631 -TEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRG 689
T +TH E+ P+ +LG+ AS+IP+P+HN +PRNTY + M KQ++G N+ R+DT
Sbjct: 540 TTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMA 599
Query: 690 HLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARS 749
++L+YPQ PL +R M+ + + + PAGQN +VA+ Y GYN ED++I+N++SI+RG+ RS
Sbjct: 600 NILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRS 659
Query: 750 TFFRTYEAEEKKYLGGQTDKFEIP--SPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVL 807
FFR+Y EK+ ++FE P S T+R G Y L+ DG+I P +V G D++
Sbjct: 660 LFFRSYTDCEKRVGINIVEQFEKPDRSNTLRPKHGT--YDKLENDGIIAPGIRVTGDDII 717
Query: 808 IGRTSPPRFLEERGLGAVSLQE-RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRD 866
IG+TSP + + LG + Q +R+ S +R +E G+VD V T DG + VKV VR
Sbjct: 718 IGKTSPIN-PDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRT 776
Query: 867 LRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAI 926
+IP+IGDKFASRHGQKG IG+ QEDMP+T GI PD+I+NPH IPSRMT+ L+E +
Sbjct: 777 TKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECL 836
Query: 927 GGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVI 986
KV ALKG D T F + + L E G++ G EIMY G TGK+ A +F G
Sbjct: 837 LSKVGALKGMEGDATPFTDVTVDSVSNLLREHGYQSRGFEIMYHGHTGKKLRAQVFFGPT 896
Query: 987 YYQRLHH 993
YYQRL H
Sbjct: 897 YYQRLRH 903
>gb|AAF19060.1|AF107788_1 (AF107788) DNA-dependent RNA polymerase II RPB140 [Issatchenkia
orientalis]
Length = 905
Score = 557 bits (1419), Expect = e-157
Identities = 324/848 (38%), Positives = 486/848 (57%), Gaps = 89/848 (10%)
Query: 216 IPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQEALE 272
+P + V V V RALG+ D DI+ + +D ++ ++L +E+ I +Q+ AL+
Sbjct: 66 LPYIKTDVPIVIVFRALGVIEDGDILQHICYDDDDWQMLEMLKPCIEEGFLIQSQEVALD 125
Query: 273 YIGKLV-APGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGK 331
YIG+ A G RE R++ A+ ++ LPHI KAY+ G + +++ +L +
Sbjct: 126 YIGRRGNAVGIKRERRIQFAKDILQREFLPHISQDGGHETNKAYFFGYIINRLLLCALER 185
Query: 332 RDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFI 391
+++DD+DH+ KRL LAG LL +LFR+ F +L +DI M + + GE + I
Sbjct: 186 KEQDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRYMQRCIEH-GEDFN-------I 237
Query: 392 RNSIRPDVLTERIEHALATGAWP------GGRTGVSQLLDRTNYVSTLSHLRRVTSPLDR 445
++++ +T ++++LATG W + GVSQ+L+R Y STLSHLRR +P+ R
Sbjct: 238 VSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSSTLSHLRRTNTPIGR 297
Query: 446 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIV 505
+ + R LH THWG +CP ETPEG CGLVKNL+LM+ I+ E + L G+
Sbjct: 298 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSASEPITYLLEEWGLE 357
Query: 506 PIEVRRPSPELW--RVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREV 563
PI P RV+LNG +GT D LV+ +++ RRSG IS +++ RE
Sbjct: 358 PISDYDPQEHKLSTRVFLNGNWVGTHRDPGMLVDTMRQLRRSGTISSEVSLIRDIREREF 417
Query: 564 YVNSDDGRVRRPLIIVEN-------GKPKLTKEHVQAIKEGRLK---------------- 600
+ +D GRV RPL IV++ G KLTKEH + I + ++
Sbjct: 418 KIFTDAGRVYRPLFIVDDDPDSENKGGLKLTKEHCRKILDREVEEIPQDDEFDENGEPLE 477
Query: 601 -------WSDLVRMGVIEYLDAEEEENAYVAMWPWEVT--------EEH----------- 634
W L+ G++EYLDAEEEE +AM +++ +EH
Sbjct: 478 PLQRIYGWESLLSEGIVEYLDAEEEETVLIAMSSEDLSFNNQNGEDDEHMNQDHDENGNL 537
Query: 635 ----------------THLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGW 678
TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+
Sbjct: 538 IQSDKRIKSHINSHSFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFL 597
Query: 679 ANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIIN 738
N+ +R+DT ++L+YPQ PL ++ M+ + + + PAGQN +VA+ Y GYN ED++I+N
Sbjct: 598 TNYNVRMDTMANILYYPQKPLAKTQSMEFLKFRELPAGQNAIVAICCYSGYNQEDSMIMN 657
Query: 739 KASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPT-VRGYRGEKYYRHLDEDGLIFP 797
++SI+RGL RS FFR+Y +E++ ++FE P + G++ Y + LD+DGLI P
Sbjct: 658 QSSIDRGLFRSLFFRSYMDQERRNGISVVEEFEKPMRSNTLGFKAGTYEK-LDDDGLISP 716
Query: 798 ESKVEGKDVLIGRTSP-PRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDG 856
+V G D++IG+T P P EE G +R+ S +R +E G+VD+V++T +G
Sbjct: 717 GVRVSGDDIIIGKTVPIPPDTEELGQ-RTKYHTKRDASTPLRATESGIVDQVLLTTNSEG 775
Query: 857 TKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSR 916
+ VKV +R ++P+IGDKFASRHGQKG IG+ EDMP+T GIVPDLI+NPH IPSR
Sbjct: 776 LRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRNEDMPFTSEGIVPDLIINPHAIPSR 835
Query: 917 MTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKR 976
MTV L+E + KVA+L+G D T F + + K L E G++ G E+MY+G TGK+
Sbjct: 836 MTVAHLIECLLSKVASLRGYEGDATPFTDLTVDAVSKLLRENGYQSRGFEVMYNGHTGKK 895
Query: 977 FEADIFVG 984
A +F G
Sbjct: 896 LMAQVFFG 903
>sp|Q58444|RPB2_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT B" >gi|2117911|pir||G64429
DNA-directed RNA polymerase (EC 2.7.7.6) subunit B'' -
Methanococcus jannaschii >gi|1591693|gb|AAB99043.1|
(U67546) DNA-directed RNA polymerase, subunit B''
(rpoB2) [Methanococcus jannaschii]
Length = 498
Score = 541 bits (1378), Expect = e-152
Identities = 270/497 (54%), Positives = 363/497 (72%), Gaps = 17/497 (3%)
Query: 17 VMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPD-FEVKFGKIRVGEPEFQ 75
++++Y++E GL+ ++SYN F++ LQ+++DE G I+ +I ++VK GKI+VG+P +
Sbjct: 7 LVDAYFKEHGLIDHQIESYNDFVENRLQKIIDEVGYIETEITGGYKVKLGKIKVGKPVIK 66
Query: 76 EPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIR----GIEQEPVEVRIGELPIMLKSKV 131
E G +P+ PM+ARIR+LTYS PLYLEM P+I E E VEV IGELP+ML SK+
Sbjct: 67 EADGSIRPITPMEARIRDLTYSVPLYLEMTPIIGEGEDAREGETVEVYIGELPVMLGSKI 126
Query: 132 CRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYI--A 189
C LYG S +EL LGEDP+DP GYFIING+E+V+++ ED+ PNR L EK ER K + A
Sbjct: 127 CHLYGKSREELIDLGEDPEDPFGYFIINGTEKVLITQEDLIPNRILCEKAERSGKIVDVA 186
Query: 190 KVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDPE 249
KVFS RHG+RAL TVER DG+LY P +P + V +M+ALG E DKDI++++ ++
Sbjct: 187 KVFSTRHGFRALCTVERHPDGLLYATFPGMPGQIPLVILMKALGAETDKDIIESIDDERF 246
Query: 250 VQQILFD--NLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLLPHIGVSP 307
+I+ + + + +I + ++ALE+IGK VAPGQA++YRLKRAE V+ N LLPH+GV+
Sbjct: 247 FMEIVLNIQEIREEHNINSPEDALEFIGKRVAPGQAKDYRLKRAETVLCNYLLPHLGVTK 306
Query: 308 EDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDI 367
ED +K +LG+MA +EL G R EDDKDHYA KR +LAGDL++DLFR AFSQLVKDI
Sbjct: 307 EDFPKKIRFLGIMARNALELYFGYRGEDDKDHYAYKRAKLAGDLMEDLFRYAFSQLVKDI 366
Query: 368 QYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRT 427
+YQ+ E+ N I+ ++R D+LTERI+HA+ATG W GG+TGVSQLLDRT
Sbjct: 367 KYQL--------ERQTLRNKTPSIQAAVRSDILTERIKHAMATGTWVGGKTGVSQLLDRT 418
Query: 428 NYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQIT 487
+Y++T S LRR+ SPL R QPHFEAR+LHGTHWG+ICP+ETPEGPNCGLVKN A+M ++T
Sbjct: 419 SYLATNSQLRRIVSPLSRSQPHFEARELHGTHWGKICPSETPEGPNCGLVKNFAIMCKVT 478
Query: 488 TAVPEEEVKEYLMSLGI 504
+ +V E L S GI
Sbjct: 479 REEDDSKVIELLKSFGI 495
>gb|AAK40568.1| DNA-directed RNA polymerase, subunit B'' (rpoB2) [Sulfolobus
solfataricus]
Length = 480
Score = 540 bits (1375), Expect = e-152
Identities = 277/476 (58%), Positives = 344/476 (72%), Gaps = 10/476 (2%)
Query: 9 VTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIR 68
+T D+ W V+E+Y++ KGLVRQHLDSYN F+ LQE++DE G I +IP +V+ GKIR
Sbjct: 5 LTIDERWRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIPGLKVRLGKIR 64
Query: 69 VGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLK 128
+G+P +E + + PM+AR+RNLTY+APL+L MIPV IE EP EV IG+LPIMLK
Sbjct: 65 IGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIMLK 124
Query: 129 SKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVE--KDERQEK 186
S + + + D+L ++GEDPKDPGGYFI+NGSERVIV+ ED+APNR LV+ K
Sbjct: 125 SAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGSNIT 184
Query: 187 YIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGN 246
+ AK+ S GYR VT+ER KDG +V P VP + FV +MRALG+ D+DIV AV
Sbjct: 185 HTAKIISSTAGYRVPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSL 244
Query: 247 DPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLLPHIGVS 306
DPEVQ LF +LE AS I +AL++IG VA GQ RE R+++A+ +ID LPH+G S
Sbjct: 245 DPEVQNELFPSLEQASSIANVDDALDFIGSRVAIGQKRENRIEKAQQIIDKYFLPHLGTS 304
Query: 307 PEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKD 366
EDR +KAYYL KVIEL LG+R+ DDKDHYANKRLRLAGDL LFRVAF VKD
Sbjct: 305 AEDRKKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKD 364
Query: 367 IQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDR 426
+ YQ+ K+ + RG K ++ +RPD++TERI HALATG W GGRTGVSQLLDR
Sbjct: 365 LTYQLEKS-KVRGRKLA-------LKALVRPDIVTERIRHALATGNWVGGRTGVSQLLDR 416
Query: 427 TNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLAL 482
TN++S LSHLRRV S L R QP+FEARDLHGT WGR+CP ETPEGPN GLVKNLA+
Sbjct: 417 TNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLAV 472
>sp|P41558|RPB2_METVA DNA-DIRECTED RNA POLYMERASE SUBUNIT B" >gi|629374|pir||S47160
DNA-directed RNA polymerase (EC 2.7.7.6) - Methanococcus
vannielii >gi|505290|emb|CAA51726.1| (X73293)
DNA-directed RNA polymerase [Methanococcus vannielii]
Length = 499
Score = 536 bits (1365), Expect = e-151
Identities = 266/499 (53%), Positives = 362/499 (72%), Gaps = 18/499 (3%)
Query: 16 IVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPD-FEVKFGKIRVGEPEF 74
++++++++E LV+ H+DSY+ F++ +Q ++DE G++ +I ++V FGK+RV +P
Sbjct: 5 VIVDAFFRENSLVKHHIDSYDDFVENKIQGIIDEVTGVETEIKGGYKVSFGKVRVTKPIN 64
Query: 75 QEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQE----PVEVRIGELPIMLKSK 130
+E G K + PM+ARIRNL YSAPLYLEMIP+I ++E P+EV IGELP+ML +K
Sbjct: 65 KEADGSVKEITPMEARIRNLAYSAPLYLEMIPLIGEGDEEKTLSPIEVYIGELPVMLGAK 124
Query: 131 VCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKY--I 188
+C L G S++++ GEDPKDP GYFI+NGSE+ +V+ ED+ PNR L EK E+ K I
Sbjct: 125 ICHLSGKSEEDMINYGEDPKDPLGYFIVNGSEKAVVAQEDLIPNRILCEKVEKNNKIVDI 184
Query: 189 AKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDP 248
AKVFS RHG+RAL TVER DG+L V P +P + V +MRALG E D++I++ + ++P
Sbjct: 185 AKVFSTRHGFRALCTVERSPDGLLNVSFPGMPSTIPLVILMRALGAESDREIMELISDEP 244
Query: 249 EVQQILFDNLEDASD---ITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLLPHIGV 305
V L NL++A + I T ++ALE+IGK VAPGQ +EY+LKRAE ++ N LLPH+G+
Sbjct: 245 TVVMQLVANLQEAREEHGINTTEDALEHIGKRVAPGQPKEYKLKRAETILCNYLLPHMGI 304
Query: 306 SPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVK 365
E K YLG MA IEL LG R EDDKDHYANKRL+LAGDL++DLFR +F+QL+K
Sbjct: 305 ESEKLGAKCKYLGRMAKNSIELYLGSRVEDDKDHYANKRLKLAGDLMEDLFRHSFNQLIK 364
Query: 366 DIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLD 425
DI+YQ+ E+ N I+ ++R DVLTER+ HA+ATG W GGRTGVSQLLD
Sbjct: 365 DIKYQL--------ERQAIRNKEPSIQAAVRSDVLTERMRHAMATGNWVGGRTGVSQLLD 416
Query: 426 RTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQ 485
RT+Y++T+S LRRV SPL R QPHFEARDLH T WG+ICP+ETPEGPNCGLVKNLA+M +
Sbjct: 417 RTSYLATVSQLRRVVSPLSRSQPHFEARDLHATQWGKICPSETPEGPNCGLVKNLAVMCK 476
Query: 486 ITTAVPEEEVKEYLMSLGI 504
+TT +E + + + +G+
Sbjct: 477 VTTDEEDEGIIQLIKEIGL 495
>gi|11499470 DNA-directed RNA polymerase, subunit B'' (rpoB2) [Archaeoglobus
fulgidus] >gi|7434719|pir||E69485 DNA-directed RNA
polymerase, subunit B'' (rpoB2) homolog - Archaeoglobus
fulgidus >gi|2648658|gb|AAB89367.1| (AE000972)
DNA-directed RNA polymerase, subunit B'' (rpoB2)
[Archaeoglobus fulgidus]
Length = 512
Score = 528 bits (1345), Expect = e-148
Identities = 266/516 (51%), Positives = 357/516 (68%), Gaps = 30/516 (5%)
Query: 13 DLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEP 72
D ++ +Y+ + LV+ +DS+N FID GLQ V+DE G I+ DIPD V+ G+I+VG P
Sbjct: 3 DTRVLARAYFTHERLVKHQIDSFNRFIDEGLQRVIDEQGVIELDIPDTYVELGRIKVGTP 62
Query: 73 EFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVC 132
+E G PL P DAR+RNL Y+AP+YLE G E V+IG LP+M+KSK+C
Sbjct: 63 IIKEAEGTTMPLLPADARLRNLNYAAPIYLECTVYDEGKPLETEIVQIGMLPVMVKSKIC 122
Query: 133 RL------------------YGLS-DDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAP 173
L LS +++L GEDP DPGGYFIING+ER +V++ED++P
Sbjct: 123 NLNPSFIDAVLERARKVNNLQSLSYEEKLCIAGEDPYDPGGYFIINGTERALVTLEDLSP 182
Query: 174 NRTLVEKDERQEKYI--AKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRA 231
N+ L+E++E+ + + AK FS R GYRAL+ VER ++ IL V P +PKP+KFV +MRA
Sbjct: 183 NKILLEREEKYGEMVELAKCFSQRAGYRALIVVERGRNNILEVTFPQLPKPIKFVTLMRA 242
Query: 232 LGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRA 291
LG+E D++IV+ V +PE+ + + N+ED SD+ +Q+EA+EYIGK VAPGQ+REYR +RA
Sbjct: 243 LGVETDQEIVEMVSTNPEIMKYMLQNIED-SDVGSQEEAIEYIGKRVAPGQSREYRYQRA 301
Query: 292 EYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDL 351
E V+D LPH+G E R KA++L MA V EL LG + EDDKDHYANKRL+LAGDL
Sbjct: 302 EQVLDQYFLPHLGTDKESRRAKAFFLARMAEAVFELYLGYKREDDKDHYANKRLKLAGDL 361
Query: 352 LKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATG 411
++++FRVAF +L+KD++YQ+ + + RG ++R DVLT+R+ H +ATG
Sbjct: 362 MEEIFRVAFLRLIKDVKYQLERA-KIRGRPLKMST-------AVRSDVLTDRLMHPMATG 413
Query: 412 AWPGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEG 471
W GGRTGVSQL+DR NY+S +SHLRRV SPL R QPHFEARDLH T WGRICP+ETPEG
Sbjct: 414 NWVGGRTGVSQLIDRHNYISVISHLRRVVSPLSRSQPHFEARDLHPTQWGRICPSETPEG 473
Query: 472 PNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPI 507
PNCGLVKN A A+++ E E+K+ + LG+ PI
Sbjct: 474 PNCGLVKNFAEYAEVSVGTDENEIKKVVFRLGVEPI 509
>pir||B71608 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain -
malaria parasite (Plasmodium falciparum)
>gi|3845258|gb|AAC71932.1| (AE001413) DNA-directed RNA
polymerase subunit 2 [Plasmodium falciparum]
Length = 1345
Score = 526 bits (1341), Expect = e-148
Identities = 314/899 (34%), Positives = 496/899 (54%), Gaps = 77/899 (8%)
Query: 8 EVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIK------------- 54
++T DD W+V+ S++ GLV Q ++SYN FI+ +QE++DE I+
Sbjct: 35 QITEDDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQYRTDRDE 94
Query: 55 PDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIP---VIRGI 111
D + +KFG++ + P + E + K L+P +AR+RNLTYS+ +Y+++ +I +
Sbjct: 95 NDNIIYSLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEV 154
Query: 112 EQEPV--------EVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSER 163
++PV + +G +P+MLKS C GL ++E+ +GE D GGYFI+NG E+
Sbjct: 155 TKKPVLKEKFIYERINLGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEK 214
Query: 164 VIVSIEDIAPNRTLVEKDERQEKY--IAKVFSYRHGYRALVTVE--------------RK 207
V+V+ E +A N V K ++ K+ +A++ S +A K
Sbjct: 215 VLVAQERMANNFIYVFKKKQPSKFGWVAEIRSQMERSQATSGFSVKMKTRSGGSQYGSNK 274
Query: 208 KDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVG---NDPEVQQILFDNLEDASDI 264
G L +P + + + RALG D+DI+ + ND + L + LE+ +
Sbjct: 275 SGGQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKLMINALRETLEECIEY 334
Query: 265 TTQQEALEYIGKL-VAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALK 323
TQ L++IGK G +RE R+ A+ ++ +LPH+G P +K+Y++G M +
Sbjct: 335 PTQDVCLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMINR 394
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
++ LG+ EDD+DH+ KRL +AG L+ F F ++ KD++ + + V
Sbjct: 395 LLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVRRVLQRQIDNNKPFDV 454
Query: 384 FGNIHRFIRNSIRPDVLTERIEHALATGAWPGG------RTGVSQLLDRTNYVSTLSHLR 437
G I + +T+ +++ LATG W RTGV+Q+L+R Y S LSHLR
Sbjct: 455 AGAIRSCSQ-------ITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLR 507
Query: 438 RVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKE 497
R+ +PL RE + R LH THWG ICP ETPEG + GLVKNL+LM I+ + E
Sbjct: 508 RLNTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYE 567
Query: 498 YLMSLGIVPIEVRRPS--PELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVA 555
+L G+ ++ P E +++LNG +G L+E + + RR IS ++
Sbjct: 568 FLTEWGLESLDEVPPELMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCDISPEASIV 627
Query: 556 YYEDVREVYVNSDDGRVRRPLIIVEN----GKPKLTKEHVQAIKE--GRLKWSDLVRMGV 609
+ +E+ + +D GR RPL +V+N K KLTKEHV I++ W L++ G+
Sbjct: 628 RDVNSKEIKIFTDSGRAMRPLYVVKNVNGENKLKLTKEHVNNIEKYPETYNWDYLIQEGI 687
Query: 610 IEYLDAEEEENAYVAMWPWEVT------EEHTHLELMPAAILGLPASLIPYPEHNAAPRN 663
IEY+D EEEE ++M+ ++ TH E+ P+ ILG+ AS+IP+ +HN +PRN
Sbjct: 688 IEYIDCEEEETTMISMFIDDLKTGTGYYNNFTHCEIHPSLILGVCASIIPFSDHNQSPRN 747
Query: 664 TYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAV 723
TY + M KQ++G+ NF IR+DT HLL+YPQ PLV +++M+ + + + PAG N +VA+
Sbjct: 748 TYQSAMGKQAMGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVMEYLRFRELPAGINAIVAI 807
Query: 724 LAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGE 783
+ Y GYN ED++I+N++SI+RGL RS F+RTY +EEK+ + FE PS V
Sbjct: 808 MCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGSLIIESFEKPSVRVVKNLKR 867
Query: 784 KYYRHLDEDGLIFPESKVEGKDVLIGRTSP------PRFLEERGLGAVSLQERRETSVA 836
Y LD+DGLI P +V G D++IG+ SP +E+R + S+Q + S++
Sbjct: 868 GDYTKLDDDGLIAPGIRVLGDDIIIGKVSPNIDDEDDIIIEKRNTSSSSIQIYNKDSIS 926
Score = 309 bits (784), Expect = 9e-83
Identities = 145/288 (50%), Positives = 202/288 (69%)
Query: 828 QERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIG 887
Q +++ S+++R +E GV+D V+++ G K KV VR +RIP+IGDKFASRHGQKG IG
Sbjct: 1057 QYKKDCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIG 1116
Query: 888 LIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEP 947
+ EDMP++ GI PD+I+NPH +PSRMT+G L+E + GKVAA++G D T F
Sbjct: 1117 ITYRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPFSKIT 1176
Query: 948 EEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPV 1007
+++ ++L LG++ G E++Y+G G+ ++ IF+G YYQRL HMV DKIHARSRGP+
Sbjct: 1177 VQEISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPL 1236
Query: 1008 QVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAL 1067
++T+QPTEGR+R+GGLRFGEMERD ++ HG+A +L ERL EESD V VC+NCG +
Sbjct: 1237 TMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNCGLCCI 1296
Query: 1068 EDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTE 1115
D ++ C VC + IS++ + YA KLL EL M I PKL L +
Sbjct: 1297 ADINKNAYECTVCNSKTNISQIYLPYACKLLFQELMTMAIYPKLVLED 1344
>sp|P15352|RPB2_HALHA DNA-DIRECTED RNA POLYMERASE SUBUNIT B" >gi|81034|pir||S03572
DNA-directed RNA polymerase (EC 2.7.7.6) chain B'' -
Halobacterium salinarum >gi|43540|emb|CAA40424.1|
(X57144) RNA polymerase subunit B'' [Halobacterium
halobium] >gi|10582045|gb|AAG20694.1| (AE005138)
DNA-directed RNA polymerase subunit B''; RpoB''
[Halobacterium sp. NRC-1]
Length = 523
Score = 508 bits (1293), Expect = e-142
Identities = 260/505 (51%), Positives = 352/505 (69%), Gaps = 29/505 (5%)
Query: 19 ESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFE------VKFGKIRVGEP 72
ESY+ ++ L H SYNAF++ G+Q+VV E I+ DI D E V+ G +R P
Sbjct: 11 ESYFSKERLAEHHFRSYNAFLEHGMQDVVTEKERIETDIGDKEDEEPVWVELGDVRAVTP 70
Query: 73 EFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEP------VEVRIGELPIM 126
+E G + LYP +AR+RN+TYSAP+++EM ++RG E+E E ++G +PIM
Sbjct: 71 RVREADGSEELLYPQEARLRNITYSAPVFMEM-SIVRGGEEEEERVLDTTETKVGRMPIM 129
Query: 127 LKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDER--Q 184
+ S C + G SD+EL ++GEDP DPGGYFIINGSERV+++ ED+APN+ L E D +
Sbjct: 130 VGSDKCNISGFSDEELIEIGEDPADPGGYFIINGSERVLMTSEDLAPNKILAEYDSKYGD 189
Query: 185 EKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV 244
E +AK FS R GYRALV VER ++G+L V P+V + FV ++RALGLE D++IV V
Sbjct: 190 EIQVAKTFSQRRGYRALVLVERNREGLLEVSFPSVSGSISFVTLVRALGLESDEEIVHRV 249
Query: 245 GNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLLPHI- 303
DPE+ + + +NLE+A D+ TQ+EA+E +G+ VA GQ + Y+LKRA YVID LLPH+
Sbjct: 250 SEDPEIVKFMLENLEEA-DVQTQEEAIEDLGQRVASGQGKNYQLKRANYVIDRYLLPHLH 308
Query: 304 --GVSPED-RIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAF 360
GV E+ RI KAYYL MA EL+LG+R+ DDKDHYANKRL+++GDL+KDLFR A
Sbjct: 309 EDGVEEEETRINKAYYLCRMAEACFELALGRREADDKDHYANKRLKVSGDLMKDLFRTAL 368
Query: 361 SQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGV 420
++L +D++YQ+ + R E V +R DVLTER+EH +ATG W GGR+GV
Sbjct: 369 NKLARDVKYQLERANMRNRELTV--------NTVVRSDVLTERLEHPIATGNWVGGRSGV 420
Query: 421 SQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNL 480
SQL+DRT+++ LSHLRR+ SPL R QPHFEARDLH T WGRICP+ETPEGPNCGLVKN
Sbjct: 421 SQLVDRTDFMGVLSHLRRLRSPLSRSQPHFEARDLHATQWGRICPSETPEGPNCGLVKNF 480
Query: 481 ALMAQITTAVPEE-EVKEYLMSLGI 504
A +++ V +E ++K+ L S+G+
Sbjct: 481 AQAMELSQDVDDERDLKQELSSMGV 505
>dbj|BAB01854.1| (AP000377) DNA-directed RNA polymerase, subunit B [Arabidopsis
thaliana]
Length = 1172
Score = 490 bits (1248), Expect = e-137
Identities = 354/1163 (30%), Positives = 579/1163 (49%), Gaps = 115/1163 (9%)
Query: 20 SYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEV-------------KFGK 66
S++ + GL+ L+SYN FI+ GLQ V FG + + P F+V KFG+
Sbjct: 41 SFFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEMLVE-PSFDVVKKKDNDWRYATVKFGE 99
Query: 67 IRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEM-IPVIRG--------------- 110
+ V +P F + + L P AR++N+TYSA + + + + V +
Sbjct: 100 VTVEKPTFFSDDKELEFL-PWHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNY 158
Query: 111 IEQEPVEVR-----IGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVI 165
+E++ ++V+ IG +P+M+KS +C+ + ++ G+ D GGYF+I G+E+V
Sbjct: 159 VEKKILDVKKQDILIGSIPVMVKSILCKTSEKGKENCKK-GDCAFDQGGYFVIKGAEKVF 217
Query: 166 VSIEDIAPNRTLVEKDERQEKYIAKV----FSYRHGYRALVTVERKKDGILYVGIPNVPK 221
++ E + R + + ++ F R ++++ +L V +
Sbjct: 218 IAQEQMCTKRLWISNSPWTVSFRSENKRNRFIVRLSENEKAEDYKRREKVLTVYFLSTEI 277
Query: 222 PVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQ----QEALEYI 274
PV ++ ALG+ DK+ +D + G+D + L ++ A + AL Y+
Sbjct: 278 PVWLLFF--ALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNNALTYV 335
Query: 275 GKLVAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDE 334
+ Q + + AE V D L ++ + +KA +LG M ++ GKR
Sbjct: 336 EQ-----QIKSTKFPPAESV-DECLHLYLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKC 389
Query: 335 DDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNS 394
+++D + NKR+ LAG+LL+ RV + + + M K G+ + I +
Sbjct: 390 ENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLSGDGDL-------KPIEHY 442
Query: 395 IRPDVLTERIEHALATGAW--PGGR----TGVSQLLDRTNYVSTLSHLRRVTSPLDREQP 448
+ V+T + A +TGAW P + +GV L R N + TL LRR +
Sbjct: 443 LDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTGK 502
Query: 449 HFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPI- 507
+AR H +HWGR+C TP+G NCGLVKN++L+ ++T E V E L + G+ +
Sbjct: 503 VGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQ-SLESVVEKLFACGMEELM 561
Query: 508 -EVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVN 566
+ P +V LNG +G D ++ V +K RR ++ + + +D EV +
Sbjct: 562 DDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDKDDNEVRIF 621
Query: 567 SDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMW 626
+D GR+ RPL++VEN + KL +E K + + L+ G++E + EEEE+ A
Sbjct: 622 TDAGRLLRPLLVVENLQ-KLKQE-----KPSQYPFDHLLDHGILELIGIEEEEDCNTAWG 675
Query: 627 PWEVTEE---HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGM-AKQSLGLGWANFR 682
++ +E +TH EL + +LG+ +++P+ H+ R Y + +Q++G N
Sbjct: 676 IKQLLKEPKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPN 735
Query: 683 IRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASI 742
IR DT L YPQ PL + + + E GQN +VAV + GYN ED+I++NKAS+
Sbjct: 736 IRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASL 795
Query: 743 ERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVE 802
ERG+ RS R+Y+AE + K + + + L++DG F + +
Sbjct: 796 ERGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMS 855
Query: 803 GKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKV 862
D++IGR + + + S+ ++ +ERG+V KV+++ +G V
Sbjct: 856 TGDIVIGRCT---------------ESGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAV 900
Query: 863 TVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQL 922
++R +R P +GDKF+S HGQKGV+G + Q++ P+T GIVPD+++NPH PSR T GQL
Sbjct: 901 SLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQL 960
Query: 923 LEAI-----------GGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDG 971
LEA G AA T F ++ ++L GF G E +Y+G
Sbjct: 961 LEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNG 1020
Query: 972 ITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMER 1031
+G+ + IF+G +YQRL HM DK+ R+ GPV LT+QP R R GG++FGEMER
Sbjct: 1021 RSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1080
Query: 1032 DVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIA-------LEDKRRHKVYCPVCGEEE 1084
D L+ HGA+ L ERL SD +++ +C C A ++ YC VC +
Sbjct: 1081 DCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSD 1140
Query: 1085 RISKVEMSYAFKLLLDELKAMVI 1107
+ +V + Y KLL EL +M I
Sbjct: 1141 HVVRVYVPYGAKLLCQELFSMGI 1163
>dbj|BAB02021.1| (AB020749) DNA-dependent RNA polymerase II [Arabidopsis thaliana]
Length = 1119
Score = 480 bits (1221), Expect = e-134
Identities = 346/1131 (30%), Positives = 565/1131 (49%), Gaps = 95/1131 (8%)
Query: 20 SYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHG 79
S+++E GL+ L+SYN FI+ GLQ V + FG I + P F+V I+ + +++
Sbjct: 32 SFFEEFGLISHQLNSYNFFIEHGLQNVFESFGDILVE-PSFDV----IKKKDGDWRYATV 86
Query: 80 QRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSD 139
+K + D Y+E ++ + ++ IG +P+M+KS +C+
Sbjct: 87 FKKIVIKHD----KFKTGQDEYVEK----EILDVKKQDILIGSIPVMVKSVLCKTSEKGK 138
Query: 140 DELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYIAKVFSYRHGYR 199
+ ++ G D GGYF+I G+E+V ++ E + R + + ++ R R
Sbjct: 139 ENCKK-GNCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNSPWTVSFRSETKRNRFIVR 197
Query: 200 ALVTVERKKD-----GILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQ 251
L E+ +D +L V + PV ++ ALG+ DK+ +D + G+D +
Sbjct: 198 -LSENEKAEDYKIMEKVLTVYFLSTEIPVWLLFF--ALGVSSDKEAMDLIAFDGDDASIT 254
Query: 252 QILFDNLEDASDITTQ----QEALEYIGKLVAPGQAREYRLKRAEYVIDNNLLPHIGVSP 307
L ++ +A + AL Y+ Q + + AE V D+ L ++
Sbjct: 255 NSLIASIHEADAVCEAFRCGNNALTYVEH-----QIKSTKFPPAESV-DDCLRLYLFPCL 308
Query: 308 EDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDI 367
+ +KA +LG M ++ GKR +++D + NKR+ LAG+LL+ RV + + +
Sbjct: 309 QGLKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKM 368
Query: 368 QYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAW--PGGR----TGVS 421
M K G+ + I + + V+T + A +TGAW P + +GV
Sbjct: 369 TRAMQKQLSGDGDL-------KPIEHYLDASVITNGLNRAFSTGAWSHPFRKMERVSGVV 421
Query: 422 QLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLA 481
L R N + TL LRR + +AR H +HWGR+C TP+G NCGLVKN++
Sbjct: 422 ANLGRANPLQTLIDLRRTRQQVLYTGKVGDARHPHPSHWGRVCFLSTPDGENCGLVKNMS 481
Query: 482 LMAQITTAVPEEEVKEYLMSLGIVPI--EVRRPSPELWRVYLNGVIIGTIEDGKALVERI 539
L+ ++T E V E L + G+ + + P +V LNG +G D ++ V +
Sbjct: 482 LLGLVSTQ-GLESVVEMLFTCGMEELMNDTSTPLCGKHKVLLNGDWVGLCADSESFVGEL 540
Query: 540 KKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRL 599
K RR ++ + + +D EV + +D GR+ RPL++VEN KL ++ K +
Sbjct: 541 KSRRRQSELPLEMEIKRDKDDNEVRIFTDAGRLLRPLLVVEN-LHKLKQD-----KPTQY 594
Query: 600 KWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEE---HTHLELMPAAILGLPASLIPYPE 656
+ L+ G++E + EEEE+ A ++ +E +TH EL + +LG+ +++P+
Sbjct: 595 PFKHLLDQGILELIGIEEEEDCTTAWGIKQLLKEPKNYTHCELDLSFLLGVSCAIVPFAN 654
Query: 657 HNAAPRNTYGAGM-AKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPA 715
H+ R Y + +Q++G N IR DT L YPQ PL + + + E
Sbjct: 655 HDHGKRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLEKEVLFN 714
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSP 775
GQN +VAV + GYN ED+I++NKAS+ERG+ RS R+Y+AE + K +
Sbjct: 715 GQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDTKDSEKRKKMDELVQ 774
Query: 776 TVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSV 835
+ Y L++DG F + + D++IGR + + + S+
Sbjct: 775 FGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCT---------------ESGADHSI 819
Query: 836 AVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDM 895
++ +ERG+V KV+++ +G V++R +R P +GDKF+S HGQKGV+G + Q++
Sbjct: 820 KLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNF 879
Query: 896 PWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDG------------TAF 943
P+T GIVPD+++NPH PSR T GQLLEA K A ++ +G T F
Sbjct: 880 PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPF 939
Query: 944 IGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARS 1003
++ ++L GF G E +Y+G +G+ + IF+G +YQRL HM +K+ R+
Sbjct: 940 STPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRN 999
Query: 1004 RGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCG 1063
GPV LT+QP R R GG+RFGEMERD L+ HGA+ L ERL SD +++ +C C
Sbjct: 1000 TGPVHPLTRQPVADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCK 1059
Query: 1064 HIA-------LEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVI 1107
A ++ YC VC + + +V + Y KLL EL +M I
Sbjct: 1060 TYANVIERTPSSGRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQELFSMGI 1110
>pir||T50175 dna-directed rna polymerase ii 138 kd polypeptide [imported] -
fission yeast (Schizosaccharomyces pombe) (fragment)
>gi|6912018|emb|CAB72226.1| (AL138854) dna-directed rna
polymerase ii 138 kd polypeptide [Schizosaccharomyces
pombe]
Length = 518
Score = 469 bits (1193), Expect = e-130
Identities = 240/480 (50%), Positives = 325/480 (67%), Gaps = 6/480 (1%)
Query: 635 THLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHY 694
TH E+ PA ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ N+++R+DT ++L+Y
Sbjct: 36 THCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYY 95
Query: 695 PQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRT 754
PQ PL +R M+ + + + PAGQN +VA+L Y GYN ED+II+N+ASI+RGL RS F+RT
Sbjct: 96 PQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRT 155
Query: 755 YEAEEKKYLGGQTDKFEIP--SPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTS 812
Y +EKK ++FE P S T+R G Y L++DGLI P ++V G+D++IG+T+
Sbjct: 156 YTDQEKKIGMTVMEEFERPVRSTTLRMKHGT--YDKLEDDGLIAPGTRVSGEDIIIGKTA 213
Query: 813 P-PRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPE 871
P P EE G L +R+ S +R +E G+VD+V++T +G K VKV +R RIP+
Sbjct: 214 PIPLDHEELGQ-RTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQ 272
Query: 872 IGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVA 931
IGDKFASRHGQKG IG+ EDMP++ GIVPD+I+NPH IPSRMTV L+E KV+
Sbjct: 273 IGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVS 332
Query: 932 ALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRL 991
AL G D T F E + K L GF+ G E+MY G TG++ A +F+G YYQRL
Sbjct: 333 ALSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRL 392
Query: 992 HHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEES 1051
H+V DKIHAR+RGPVQ+LT+QP EGR+R+GGLRFGEMERD + HG + +L ERL + S
Sbjct: 393 KHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERLFDCS 452
Query: 1052 DKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKL 1111
D V VC+ CG IA+ ++ C C R S+V + YA KLL EL +M I P+L
Sbjct: 453 DAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNIAPRL 512
>pir||T43832 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[imported] - barley (fragment) >gi|2736117|gb|AAB94059.1|
(AF020839) RPB140 [Hordeum vulgare]
Length = 555
Score = 467 bits (1189), Expect = e-130
Identities = 246/559 (44%), Positives = 352/559 (62%), Gaps = 22/559 (3%)
Query: 460 WGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPS--PELW 517
WG +CP ETPEG CGLVKNLALM IT + E+L G E P+ P+
Sbjct: 1 WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAA 60
Query: 518 RVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLI 577
++++NG +G + LV+ +++ RR ++ + V ++E+ + +D GR RPL
Sbjct: 61 KIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLF 120
Query: 578 IVENGKPKLTKEHVQAIKEGRLK---WSDLVRMGVIEYLDAEEEENAYVAMW-------- 626
IVEN + + K+H++A+++ W DLV G IEY+D EEEE ++M
Sbjct: 121 IVENQRLLIKKKHIRALQQRETPDEGWHDLVAKGFIEYIDTEEEETTMISMTIRDLETSR 180
Query: 627 --PWEV-TEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRI 683
P E +E +TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ N+++
Sbjct: 181 HNPGEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQL 240
Query: 684 RVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIE 743
R+DT ++L+YPQ PLV +R M+ + + PAG N +VA+ Y GYN ED++I+N++SI+
Sbjct: 241 RMDTLAYVLYYPQKPLVTTRAMEHLLFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 300
Query: 744 RGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDEDGLIFPESKV 801
RG RS FFR+Y EEKK G K E P G ++ Y LD+DGL P ++V
Sbjct: 301 RGFFRSLFFRSYRDEEKKM--GTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRV 358
Query: 802 EGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVK 861
G+DV+IG+TSP ++ G + +R+ S ++R SE G+VD+V++T DG + VK
Sbjct: 359 SGEDVIIGKTSP--IPQDDAQGQATRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 416
Query: 862 VTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQ 921
V +R +RIP+IGDKF+SRHGQKG +G+ QEDMPWT GI PD+IVNPH IPSRMT+GQ
Sbjct: 417 VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQ 476
Query: 922 LLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADI 981
L+E I GKVAA G+ D T F + + K L + G++ G E MY+G TG++ A I
Sbjct: 477 LIECIMGKVAAHMGKEGDATPFTDVTVDHISKALHKCGYQMRGFETMYNGHTGRKLTAMI 536
Query: 982 FVGVIYYQRLHHMVADKIH 1000
F+G YYQRL HMV DKIH
Sbjct: 537 FLGPTYYQRLKHMVDDKIH 555
>gb|AAC08961.1| (AF043427) RNA polymerase II second largest subunit [Nymphaea
odorata]
Length = 555
Score = 462 bits (1175), Expect = e-128
Identities = 245/559 (43%), Positives = 350/559 (61%), Gaps = 22/559 (3%)
Query: 460 WGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPS--PELW 517
WG +CP ETPEG CGLVKNLALM IT + E+L E P+ P+
Sbjct: 1 WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQAT 60
Query: 518 RVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLI 577
++++NG +G + + LV+ +++ RR ++ + V ++E+ + +D GR RPL
Sbjct: 61 KIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLF 120
Query: 578 IVENGKPKLTKEHVQAIKEGRLK---WSDLVRMGVIEYLDAEEEENAYVAMW-------- 626
IVE + + K+ ++A++ + W DLV G IEY+D EEEE ++M
Sbjct: 121 IVEKQRLLIKKKDIRALQLRETQEEGWHDLVAKGFIEYIDTEEEETTMISMTISDLVSAR 180
Query: 627 --PWEV-TEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRI 683
P E +E +TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ N+++
Sbjct: 181 LNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQL 240
Query: 684 RVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIE 743
R+DT ++L+YPQ PLV +R M+ + + PAG N +VA+ Y GYN ED++I+N++SI+
Sbjct: 241 RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 300
Query: 744 RGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDEDGLIFPESKV 801
RG RS FFR+Y EEKK G K + P G ++ Y LD+DGL P ++V
Sbjct: 301 RGFFRSLFFRSYRDEEKKM--GTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRV 358
Query: 802 EGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVK 861
G+DV+IG+TSP ++ G S RR+ S ++R SE G+VD+V++T DG + VK
Sbjct: 359 SGEDVIIGKTSP--ISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 416
Query: 862 VTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQ 921
V +R +RIP+IGDKF+SRHGQKG +G+ QEDMPWT GI PD+IVNPH IPSRMT+GQ
Sbjct: 417 VRMRSVRIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 476
Query: 922 LLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADI 981
L+E I GKVAA G+ D T F + + K L + G++ G E MY+G TG+R A I
Sbjct: 477 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMI 536
Query: 982 FVGVIYYQRLHHMVADKIH 1000
F+G YYQRL HMV DKIH
Sbjct: 537 FLGPTYYQRLKHMVDDKIH 555
>gb|AAC08960.1| (AF043426) RNA polymerase II second largest subunit [Peperomia
caperata]
Length = 554
Score = 461 bits (1173), Expect = e-128
Identities = 243/558 (43%), Positives = 347/558 (61%), Gaps = 21/558 (3%)
Query: 460 WGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPS--PELW 517
WG +CP ETPEG CGLVKNLALM IT + E+L E P+ P+
Sbjct: 1 WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQAT 60
Query: 518 RVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLI 577
++++NG +G + LV+ +++ RR ++ + V ++E+ + +D GR RPL
Sbjct: 61 KIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCSRPLF 120
Query: 578 IVENGKPKLTKEHVQAIKEGRLK---WSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEE- 633
IVEN K + K +QA+++ + W LV G IEY+D EEEE ++M ++ +
Sbjct: 121 IVENQKLLIKKRDIQALQQRETQEEGWHFLVSKGFIEYVDTEEEETTMISMTINDLVQAR 180
Query: 634 ---------HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIR 684
+TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ N+++R
Sbjct: 181 RSKDAYSTTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLR 240
Query: 685 VDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIER 744
+DT ++L+YPQ PLV +R M+ + + PAG N +VA+ Y GYN ED++I+N++SI+R
Sbjct: 241 MDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDR 300
Query: 745 GLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDEDGLIFPESKVE 802
G RS FFR+Y EEKK G K + P G ++ Y LD+DGL P ++V
Sbjct: 301 GFFRSLFFRSYRDEEKKM--GTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVS 358
Query: 803 GKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKV 862
G+DV+IG+TSP ++ G S RR+ S ++R SE G+VD+V++T DG + VKV
Sbjct: 359 GEDVIIGKTSP--IAQDESQGQASRYNRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKV 416
Query: 863 TVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQL 922
+R +RIP+IGDKF+SRHGQKG +G+ QEDMPWT GI PD+IVN H IPSRMT+GQL
Sbjct: 417 RMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDIIVNQHAIPSRMTIGQL 476
Query: 923 LEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIF 982
+E I GKVAA G+ D T F + + K L + G++ G E MY+G TG+R A IF
Sbjct: 477 IECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIF 536
Query: 983 VGVIYYQRLHHMVADKIH 1000
+G YYQRL HMV DKIH
Sbjct: 537 LGPTYYQRLKHMVDDKIH 554
>pir||T43842 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[imported] - Magnolia virginiana (fragment)
>gi|2736121|gb|AAB94061.1| (AF020841) RPB140 [Magnolia
virginiana]
Length = 555
Score = 457 bits (1163), Expect = e-127
Identities = 243/559 (43%), Positives = 348/559 (61%), Gaps = 22/559 (3%)
Query: 460 WGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPS--PELW 517
WG +CP ETPEG CGLVKNLALM IT + E+L E + P+
Sbjct: 1 WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISAAVIPQAT 60
Query: 518 RVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLI 577
++++NG +G + LV+ ++ RR ++ + V ++E+ + +D GR RPL
Sbjct: 61 KIFVNGCWVGIHRNPDLLVKTLRLLRRRIDVNTEVGVIRDIRLKELRLYTDYGRCSRPLF 120
Query: 578 IVENGKPKLTKEHVQAIKEGRLK---WSDLVRMGVIEYLDAEEEENAYVAMW-------- 626
IV+ + + K+H+ A+++ + W DLV G IEY+D EEEE ++M
Sbjct: 121 IVDQQRLLIKKKHIHALQQRETQEEGWHDLVAKGFIEYVDPEEEETTMISMTISDLISAR 180
Query: 627 --PWEV-TEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRI 683
P E +E +TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ N+++
Sbjct: 181 HNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQL 240
Query: 684 RVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIE 743
R+DT ++L+YPQ PLV +R M+ + + PAG N +VA+ Y GYN ED++I+N++SI+
Sbjct: 241 RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 300
Query: 744 RGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDEDGLIFPESKV 801
RG RS FFR+Y EEKK G K + P G ++ Y LD+DGL P ++V
Sbjct: 301 RGFFRSLFFRSYRDEEKKM--GTLVKEDFGRPNRESTMGMRHGSYDKLDDDGLAPPGTRV 358
Query: 802 EGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVK 861
G+DV+IG+T P ++ G V+ RR+ S ++R SE G+VD+V++T DG + VK
Sbjct: 359 SGEDVIIGKTIP--IAQDDVQGQVTRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVK 416
Query: 862 VTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQ 921
V +R +RIP+IGDKF+SRHGQKG +G+ QEDMPWT GI PD+IVNPH IPSRMT+GQ
Sbjct: 417 VRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTPEGITPDIIVNPHAIPSRMTIGQ 476
Query: 922 LLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADI 981
L+E I GKVAA G+ D T F + + K L + G++ G E MY+G TG+R A I
Sbjct: 477 LIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMI 536
Query: 982 FVGVIYYQRLHHMVADKIH 1000
F+G YYQRL HMV DKIH
Sbjct: 537 FLGPTYYQRLKHMVDDKIH 555
>pir||T43847 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[imported] - liverwort (Marchantia polymorpha)
(fragment) >gi|2736127|gb|AAB94064.1| (AF020844) RPB140
[Marchantia polymorpha]
Length = 555
Score = 456 bits (1161), Expect = e-127
Identities = 243/560 (43%), Positives = 349/560 (61%), Gaps = 24/560 (4%)
Query: 460 WGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPS--PELW 517
WG +CP ETPEG CGLVKNLALMA IT + E+L E P+ P+
Sbjct: 1 WGMMCPAETPEGQACGLVKNLALMAHITVGSAANPILEFLEEWSTENFEEISPAVIPQST 60
Query: 518 RVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLI 577
++++NG +G D + LV +++ RR ++ + V ++E+ + +D GR RPL
Sbjct: 61 KIFVNGCWVGIHRDPELLVRTLRQLRRQVDVNPEVGVVRDIRLKELRLYTDYGRCSRPLF 120
Query: 578 IVENGKPKLTKEHVQAIK---EGRLKWSDLVRMGVIEYLDAEEEENAYVAMW-------- 626
IVE + + K V+A++ W +LV G IEY+D EEEE ++M
Sbjct: 121 IVEKQRLLIKKSDVRALQLKEASESGWHELVAKGFIEYVDTEEEETTMISMTISDLVNAR 180
Query: 627 --PWEV-TEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRI 683
P E ++ +TH E+ P+ ILG+ S+IP+P+HN +PRNTY + M KQ++G+ N+++
Sbjct: 181 NNPEEAYSKTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQL 240
Query: 684 RVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIE 743
R+DT ++L+YPQ PLV ++ M + + PAG N +VA+ Y GYN ED++I+N++SI+
Sbjct: 241 RMDTLAYVLYYPQKPLVTTQAMAHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 300
Query: 744 RGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDEDGLIFPESKV 801
RG RS F+R+Y EEKK G K E P G ++ Y LD+DGL P ++V
Sbjct: 301 RGFFRSIFYRSYRDEEKKQ--GTLVKEEFERPNRENTTGMRHGSYDKLDDDGLAPPGTRV 358
Query: 802 EGKDVLIGRTSP-PRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLV 860
G+DV+IG+T+P P+ +E G A +R+ S +R SE G++D+V++T DG + V
Sbjct: 359 SGEDVIIGKTTPLPQ--DETGSQA-QRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFV 415
Query: 861 KVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVG 920
K+ VR +RIP+IGDKF+SRHGQKG +G+ QEDMPWT+ GI PD+IVNPH IPSRMT+G
Sbjct: 416 KIRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIG 475
Query: 921 QLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEAD 980
QL+E I GKVAA G+ D T F + + K L + G++ G E+MY+G TG+R A
Sbjct: 476 QLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFEVMYNGHTGRRLYAH 535
Query: 981 IFVGVIYYQRLHHMVADKIH 1000
IF+G YYQRL HMV DKIH
Sbjct: 536 IFLGPTYYQRLKHMVDDKIH 555
>pir||T43837 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[imported] - spinach (fragment)
>gi|2736119|gb|AAB94060.1| (AF020840) RPB140 [Spinacia
oleracea]
Length = 556
Score = 455 bits (1157), Expect = e-126
Identities = 241/560 (43%), Positives = 346/560 (61%), Gaps = 23/560 (4%)
Query: 460 WGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPS--PELW 517
WG +CP ETPEG CGLVKNLALM IT + E+L E P+ P+
Sbjct: 1 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEISPAVIPQST 60
Query: 518 RVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLI 577
++++NG +G D + LV+ +++ RR ++ + V ++E+ + +D GR RPL
Sbjct: 61 KIFVNGCWVGIHRDPELLVKTLRQLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLF 120
Query: 578 IVENGKPKLTKEHVQAIKEGRLK----WSDLVRMGVIEYLDAEEEENAYVAMW------- 626
IVE + K+ ++A+++ W DLV G IEY+D E EE ++M
Sbjct: 121 IVEKQSLLIKKKDIRALQQRENPEDGGWHDLVAKGYIEYIDTEGEETTMISMTINDLVTA 180
Query: 627 ---PWEV-TEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFR 682
P E +E +TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ N++
Sbjct: 181 RINPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQ 240
Query: 683 IRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASI 742
R+DT ++L+YPQ PLV +R M+ + + PAG N +VA+ Y GYN ED++I+N+++I
Sbjct: 241 FRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAI 300
Query: 743 ERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDEDGLIFPESK 800
+RG RS FFR+Y EEKK G DK + P G ++ Y LD+DGL P ++
Sbjct: 301 DRGFFRSLFFRSYRDEEKKM--GTLDKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTR 358
Query: 801 VEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLV 860
G+DV+IG+T+P + G + RR+ S+++R SE G+VD+V+ T DG + V
Sbjct: 359 CAGEDVIIGKTTP--LAPDEATGPSARYSRRDHSISLRHSETGMVDQVLPTTNADGLRFV 416
Query: 861 KVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVG 920
KV VR +R+P+IGDKF+SRHGQKG +G+ QEDMPWT GI PD+IVNPH IPSRMT+G
Sbjct: 417 KVRVRSVRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIG 476
Query: 921 QLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEAD 980
QL+E I GKVAA G+ D T F + + K L + G++ G E MY+G TG++ A
Sbjct: 477 QLIECIMGKVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAM 536
Query: 981 IFVGVIYYQRLHHMVADKIH 1000
IF+G YYQRL HMV DKIH
Sbjct: 537 IFLGPTYYQRLKHMVDDKIH 556
>gb|AAC09367.1| (AF055028) RNA polymerase II 140 kDa subunit [Homo sapiens]
Length = 476
Score = 453 bits (1153), Expect = e-126
Identities = 227/473 (47%), Positives = 316/473 (65%), Gaps = 3/473 (0%)
Query: 641 PAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLV 700
P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ NF +R+DT H+L+YPQ PLV
Sbjct: 2 PSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLV 61
Query: 701 NSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEK 760
+R M+ + + + PAG N +VA+ +Y GYN ED++I+N+++++RG RS F+R+Y+ +E
Sbjct: 62 TTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQES 121
Query: 761 KYLGGQTDKFEIPS-PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEE 819
K Q + FE P+ T +G R Y LD+DGLI P +V G DV+IG+T E+
Sbjct: 122 KKGFDQEEVFEKPTRETCQGMR-HAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENED 180
Query: 820 RGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASR 879
+R+ S +R SE G+VD+V++T +G K K+ VR +RIP+IGDKFASR
Sbjct: 181 ELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASR 240
Query: 880 HGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVD 939
HGQKG G+ QEDMP+T GI PD+I+NPH IPSRMT+G L+E + GKV+A KG D
Sbjct: 241 HGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGD 300
Query: 940 GTAFIGEPE-EKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADK 998
T F +K+ L + G+ G E++Y+G TG++ + IF+G YYQRL HMV DK
Sbjct: 301 ATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK 360
Query: 999 IHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWV 1058
IH+R+RGP+Q+L +QP EGR+R+GGLRFGEMERD + HGAA L ERL E SD +V V
Sbjct: 361 IHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHV 420
Query: 1059 CENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKL 1111
C CG +A+ + R H C C + +IS V M YA KLL EL +M I P++
Sbjct: 421 CNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 473
>sp|O27123|RPB2_METTH DNA-DIRECTED RNA POLYMERASE SUBUNIT B" >gi|7434718|pir||D69006
DNA-directed RNA polymerase (EC 2.7.7.6) chain B'' -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622148|gb|AAB85540.1| (AE000876) DNA-dependent RNA
polymerase, subunit B'' [Methanobacterium
thermoautotrophicum]
Length = 519
Score = 449 bits (1143), Expect = e-125
Identities = 236/516 (45%), Positives = 337/516 (64%), Gaps = 34/516 (6%)
Query: 15 WIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEF 74
W ++++++ + LV H+ SYN F+ +QE++D I+ + + V+ GK+ + +P
Sbjct: 12 WGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIELEQGKYRVETGKVSIEKPFI 71
Query: 75 QEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRG-IEQEPVEVRIGELPIMLKSKVCR 133
+E G + +YP +AR+RNLTYSA + LEM + G E E +V IGELP+MLKS++C
Sbjct: 72 KEADGSKSKIYPTEARLRNLTYSAHMSLEMRLLKEGGPETEFEKVYIGELPVMLKSEICH 131
Query: 134 LYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK--DERQEKYIAKV 191
L+GLS EL + GEDP DPGGYFI+NGSER IV++E+IAPN+ ++E+ +E + + A V
Sbjct: 132 LHGLSRKELMEKGEDPADPGGYFIVNGSERSIVTMEEIAPNKIILERIGEEDENRARAIV 191
Query: 192 FSYRHGYRALVTVE----RKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGND 247
S R G+RA +++E RK L + P VP + V ++RALGL D++I+ ++ +D
Sbjct: 192 TSIRSGFRARISLEYRKPRKTGVFLRISFPYVPGEIPLVILLRALGLATDQEIITSISDD 251
Query: 248 PEVQQILFDNLEDASDITTQQE------------------ALEYIGKLVAPGQAREYRLK 289
Q I D+++ + D + A++YIG VA G +YR+K
Sbjct: 252 FNYQMIAADDIQVSLDRLNLNKKEMKELDEEDRREYLIRSAIKYIGNRVAKGMTEDYRIK 311
Query: 290 RAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAG 349
RAE VID LLPHIG PE R+ KA YL M ++++ G+R DKDHY NKRLR++G
Sbjct: 312 RAEDVIDRYLLPHIGTEPEKRLEKATYLAEMTEMLLQVISGERRPHDKDHYTNKRLRVSG 371
Query: 350 DLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALA 409
DL++DL RVAF+ L +D+ YQ+ ++ R E V + ++R DVLTE ++HA+A
Sbjct: 372 DLMEDLLRVAFTSLSRDMSYQLERSLARGKEPSV--------KQAVRSDVLTENLKHAIA 423
Query: 410 TGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETP 469
TG W GGR GVSQLLDRT+Y+ TLSH+RRV SPL R QPHFEARDLH T +G+ICP ETP
Sbjct: 424 TGNWVGGRAGVSQLLDRTSYMGTLSHMRRVVSPLSRSQPHFEARDLHPTQFGKICPNETP 483
Query: 470 EGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIV 505
EGPNCGLVKNLAL+A+I+ EV+E ++ +G+V
Sbjct: 484 EGPNCGLVKNLALLAKISEGSDASEVEE-VIKMGVV 518
>pir||T43844 DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[imported] - ginkgo (fragment)
>gi|2736125|gb|AAB94063.1| (AF020843) RPB140 [Ginkgo
biloba]
Length = 555
Score = 448 bits (1140), Expect = e-124
Identities = 241/558 (43%), Positives = 346/558 (61%), Gaps = 22/558 (3%)
Query: 460 WGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPS--PELW 517
WG +CP ETPEG CGLVKNLALM IT + E+L E P+ P
Sbjct: 1 WGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPSAT 60
Query: 518 RVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLI 577
++++NG +G D LV+ +++ RR ++ + V +RE+ + +D GR RPL
Sbjct: 61 KIFVNGCWVGIHRDPDLLVKTLRQLRRQVDVNTEVGVVRDIRLRELRLYTDYGRCSRPLF 120
Query: 578 IVENGKPKLTKEHVQAI--KEGRLK-WSDLVRMGVIEYLDAEEEENAYVAMW-------- 626
IVE + + K ++A+ +EG + W DLV G IEY+D EEEE ++M
Sbjct: 121 IVEKQRLLIKKADIRALQQREGPEEGWHDLVAKGFIEYVDTEEEETTMISMTISDLVTAR 180
Query: 627 --PWEV-TEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRI 683
P E + +TH E+ P+ ILG+ AS+IP+P+H+ +PRNTY + M KQ++G+ N+++
Sbjct: 181 NNPEEAYSHTYTHCEIHPSLILGVCASIIPFPDHDQSPRNTYQSAMGKQAMGIYVTNYQL 240
Query: 684 RVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIE 743
R+DT +L+YPQ PLV +R M+ + + PAG N +VA+ Y GYN E ++I+N++SI+
Sbjct: 241 RMDTLAFVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEGSVIMNQSSID 300
Query: 744 RGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDEDGLIFPESKV 801
RG RS F+R Y EEK+ G K E P G ++ Y LD+DGL P ++V
Sbjct: 301 RGFFRSLFYRAYRDEEKRM--GTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRV 358
Query: 802 EGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVK 861
G+DV+IG+TSP +++ G V+ +R+ S ++R SE G+VD+V++T DG + VK
Sbjct: 359 SGEDVIIGKTSPISRMKQGG--QVARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVK 416
Query: 862 VTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQ 921
+ +R +RIP+IGDKF+SRHGQKG +G+ QEDMPWT GI PD+IVNPH IPSRMT+GQ
Sbjct: 417 IRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQ 476
Query: 922 LLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADI 981
L+E I GKVAA G+ D T F + + K L + G++ G E MY+G TG++ A I
Sbjct: 477 LIECIMGKVAAHVGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMI 536
Query: 982 FVGVIYYQRLHHMVADKI 999
F+G YYQRL HMV DKI
Sbjct: 537 FLGPTYYQRLKHMVDDKI 554
>sp|P09844|RPB2_METTW DNA-DIRECTED RNA POLYMERASE SUBUNIT B" >gi|80919|pir||S02194
DNA-directed RNA polymerase (EC 2.7.7.6) chain B'' -
Methanobacterium thermoautotrophicum (strain Winter)
>gi|44665|emb|CAA30836.1| (X08038) RNA polymerase
subunit B'' (AA 1-515) [Methanobacterium
thermoautotrophicum]
Length = 515
Score = 447 bits (1138), Expect = e-124
Identities = 232/517 (44%), Positives = 338/517 (64%), Gaps = 34/517 (6%)
Query: 15 WIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEF 74
W ++++++ + LV H+ SYN F+ +QE++D I+ + + V+ GK+ + +P
Sbjct: 6 WGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIELEQGQYTVETGKVTIEKPFI 65
Query: 75 QEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRG-IEQEPVEVRIGELPIMLKSKVCR 133
+E G + +YP +AR+RNLTYSA + LEM + G E E +V IGELP+MLKS++C
Sbjct: 66 KEADGSKSKIYPTEARLRNLTYSAHMSLEMRLLKEGGSETEFEKVHIGELPVMLKSEICH 125
Query: 134 LYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEK--DERQEKYIAKV 191
L+GL DEL + GEDP D GGYFI+N SER IV++E+IAPN+ ++E+ +E +++ A V
Sbjct: 126 LHGLGRDELIEKGEDPADLGGYFIVNASERSIVTMEEIAPNKIILERIGEEDEKRARAIV 185
Query: 192 FSYRHGYRALVTVE----RKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGND 247
S R G+RA +++E RK L + P VP + V ++RALGL D++I+ ++ +D
Sbjct: 186 TSIRSGFRARISLEYRKPRKTGVFLRISFPYVPGELPLVILLRALGLATDQEIITSISDD 245
Query: 248 PEVQQILFDNL--------------EDASDITTQQE-----ALEYIGKLVAPGQAREYRL 288
Q I D++ E+ D ++E A++YIG VA G +YR+
Sbjct: 246 FNYQMIAADDIQVSLDKLKLDSDKMEEEMDEEERREYLIRSAIKYIGNRVAKGMTEDYRI 305
Query: 289 KRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLA 348
KRAE VID LLPHIG P+ R+ KA YL M ++++ G+R DKDHY NKRLR++
Sbjct: 306 KRAEDVIDRYLLPHIGTEPDKRLEKAVYLAEMTEMLLQVISGERKPHDKDHYTNKRLRVS 365
Query: 349 GDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHAL 408
GDL++DLFRVAF+ L +D+ Y++ ++ R E V + ++R DVL+E ++HA+
Sbjct: 366 GDLMEDLFRVAFTSLTRDMSYRLERSLARGKEPSV--------KQAVRSDVLSENLKHAI 417
Query: 409 ATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTET 468
ATG W GGR GVSQLLDRT+Y+ TLSH+RRV SPL R QPHFEARDLH T +G+ICP ET
Sbjct: 418 ATGNWVGGRAGVSQLLDRTSYMGTLSHMRRVVSPLSRSQPHFEARDLHPTQFGKICPNET 477
Query: 469 PEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIV 505
PE PNCGLVKNLALMA+I+ +E++E + +G++
Sbjct: 478 PESPNCGLVKNLALMAKISEGSDPDEIEEVIKKMGVI 514
>gb|AAB94062.1| (AF020842) RPB140 [Aristolochia gigantea]
Length = 555
Score = 447 bits (1137), Expect = e-124
Identities = 240/559 (42%), Positives = 345/559 (60%), Gaps = 22/559 (3%)
Query: 460 WGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPS--PELW 517
WG +CP ETPEG CGLVKNLALMA IT + +L G+ + P+
Sbjct: 1 WGMMCPAETPEGQACGLVKNLALMAYITVGSATTPITAFLEEWGMEDFGEISAAVIPQAT 60
Query: 518 RVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLI 577
+V+LNG +G + + LV+ +++ RR ++ + V ++E+ V +D GR RPL
Sbjct: 61 KVFLNGCWVGIHRNPELLVKTLRQLRRRVDVNTEVGVVRDVSLKELRVYTDYGRCSRPLF 120
Query: 578 IVENGKPKLTKEHVQAIKEGRLK---WSDLVRMGVIEYLDAEEEENAYVAM------WPW 628
IVEN + + K + ++++ + W LV G +EY+D EEEE ++M +
Sbjct: 121 IVENQRLLIKKMDILSLQQRESEEEGWHSLVEKGYVEYIDTEEEETTMISMTIADLAFAR 180
Query: 629 EVTEE-----HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRI 683
E EE +TH E+ P+ ILG+ AS+IP+P+HN +PRNTY + M KQ++G+ N+++
Sbjct: 181 ENPEEAYCTTYTHCEIHPSMILGVSASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQL 240
Query: 684 RVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIE 743
R+DT+ ++L+YPQ PLV + + + + PAG N +VA+ Y GYN ED++I+N++SI+
Sbjct: 241 RMDTQAYVLYYPQKPLVTTHATEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSID 300
Query: 744 RGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDEDGLIFPESKV 801
RG RS FFR+Y EEK+ G + E P G ++ Y LD+DG P +++
Sbjct: 301 RGFFRSLFFRSYRDEEKRM--GTLVQEEFGRPNRENTMGMRHGSYDKLDDDGFAPPGTRI 358
Query: 802 EGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVK 861
G DV+IG+TSP +E G +S +R+ S+++R SE GVVD+V+ T +G + K
Sbjct: 359 SGDDVIIGKTSP--IPQEELPGQLSKFTKRDHSISLRHSESGVVDQVLYTTNAEGLRFTK 416
Query: 862 VTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQ 921
+ VR +RI +IGDKF+SRHGQKG +G+ QEDMPWT GI PD+IVNPH IPSRMT+GQ
Sbjct: 417 IRVRSVRILQIGDKFSSRHGQKGTVGMTYTQEDMPWTIDGITPDIIVNPHAIPSRMTIGQ 476
Query: 922 LLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADI 981
L+E + GKVAA G+ D T F + + K L E GF+ G E MY+G TG+R A I
Sbjct: 477 LIECVMGKVAAEVGKEGDATPFTEVTVDGICKRLHECGFQMRGFETMYNGHTGRRLPAMI 536
Query: 982 FVGVIYYQRLHHMVADKIH 1000
FVG YYQRL HMV DKIH
Sbjct: 537 FVGPTYYQRLKHMVDDKIH 555
>sp|O54888|RPA2_RAT DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (RNA POLYMERASE I
SUBUNIT 2) (RPA135) (RNA POLYMERASE I 127 KD SUBUNIT)
>gi|7513965|pir||T42368 DNA-directed RNA polymerase (EC
2.7.7.6) I second largest chain - rat
>gi|2739048|gb|AAB94600.1| (AF025424) RNA polymerase I
127 kDa subunit [Rattus norvegicus]
Length = 1135
Score = 441 bits (1123), Expect = e-122
Identities = 357/1172 (30%), Positives = 536/1172 (45%), Gaps = 160/1172 (13%)
Query: 27 LVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQE-------PHG 79
L R H+DS+N + GL V IP FE F R+ P G
Sbjct: 38 LTRAHVDSFNYAVLEGLSHAVQA-------IPPFEFAFKDERISLTIVDAAISPPAVPKG 90
Query: 80 ---QRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYG 136
+ +YP + R R TY L ++ + G+ + ++ +G +PIM+KSK+C LY
Sbjct: 91 TICKELNIYPAECRGRRSTYRGKLTADISWAVNGVPKGIIKQFLGXVPIMVKSKLCNLYN 150
Query: 137 LSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYIAKVFSYRH 196
L L + E+ ++ GGYFIING E+VI + I P R R K+ ++ Y
Sbjct: 151 LPPQVLIEHHEEAEEMGGYFIINGIEKVIRML--IMPRRNFPIAMIRP-KWKSRGLGYTQ 207
Query: 197 GYRALVTVERKKDGI---LYVGIPNVPKPVKFVY-----------VMRALGLERDKDIVD 242
++ V + + L+ + N + F+Y ++AL D I
Sbjct: 208 FGVSIHCVREEHSAVNMNLHY-VENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQ 266
Query: 243 AVGNDPEVQQILFDNLEDASDIT------TQQEALEYIG-----KLVAPGQAREYRLKRA 291
+ E +++ I TQ++ L+Y+G KL P + A
Sbjct: 267 ELIKGKEEDSFFKNSVSQMLRIVMEEGCHTQKQVLDYLGERFRVKLSLPDWYPN--AEAA 324
Query: 292 EYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDL 351
E++ + + H+ + + K Y L +M K+ L+ G+ ED+ D N+ + G L
Sbjct: 325 EFLFNQCICIHLKSNTD----KFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQL 380
Query: 352 LKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATG 411
+ + I+ + K Q+ N+ + LT E+ LATG
Sbjct: 381 FLMFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIFSMGTE---LTRPFEYLLATG 437
Query: 412 AWPGGR-------TGVSQLLDRTNYVSTLSHLRRVTSPLD-REQPHFEARDLHGTHWGRI 463
+G+ + D+ N++ LSH R V D + R L WG +
Sbjct: 438 NLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRKLLPESWGFL 497
Query: 464 CPTETPEGPNCGLVKNLALMAQITTA-VPEEEVKEYLMSLGIVPIEVR--RPSPELWRVY 520
CP TP+G CGL+ +L + ++ T V + L LG+ P++ RP + + V
Sbjct: 498 CPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDAAPCRPYSDCYPVL 557
Query: 521 LNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDG-------RVR 573
L+GV++G ++ K L + R K+ +RE +S DG R
Sbjct: 558 LDGVMVGWVD--KELAPEVADTLRRFKV-----------LRERRCSSLDGGGPDSHDRKA 604
Query: 574 RPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVT-E 632
+P+ P+ H +++ G AE A W +
Sbjct: 605 KPV-------PRAVPLH-HSLQAGEAC--------------AEPGAGQRRARWNYGAALH 642
Query: 633 EHTHLE------------LMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWAN 680
EH HL +P+ + A+ IP+ +HN +PRN Y M KQ++G
Sbjct: 643 EHCHLRGRGFWWSFHTPGALPSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLT 702
Query: 681 FRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKA 740
++ R D + + L PQ PLV + ++ P G N +VAV++Y GY+MEDA+I+NKA
Sbjct: 703 YQDRSDNKLYRLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKA 762
Query: 741 SIERGLARSTFFRT--YEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPE 798
S ERG A + +++ + EK G + F + R + LD DGL F
Sbjct: 763 SWERGFAHGSVYKSEFIDLSEKFKQGDDSLVFGVKPGDPR------VMQKLDNDGLPFIG 816
Query: 799 SKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVD--KVIITETGDG 856
+K+E D P + G ++L V + E VVD KV +TG G
Sbjct: 817 AKLEFGD--------PYY------GYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDTGSG 862
Query: 857 T-KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPS 915
K V VTVR R P IGDKFASRHGQKG++ + P EDMP+TESG++PD++ NPHG PS
Sbjct: 863 KFKCVCVTVRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPS 922
Query: 916 RMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE----EKLRKELEELGFKHTGREIMYDG 971
RMT+G L+E++ GK AAL G D T FI E E + L+ G+ G E +Y G
Sbjct: 923 RMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSG 982
Query: 972 ITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMER 1031
I+G EADIF+GV+YYQRL HMV+DK R+ G +T QP GR +GG+RFGEMER
Sbjct: 983 ISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMER 1042
Query: 1032 DVLVGHGAAMLLIERLLEESDKTEVWVCENCGHI----------ALEDKRRHKVYCPVCG 1081
D L+ HG + LL +RL SD++ VC CG + + R K C VCG
Sbjct: 1043 DALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTVCG 1102
Query: 1082 EEERISKVEMSYAFKLLLDELKAMVIRPKLNL 1113
+ I V + Y F+ + EL AM I+ KL++
Sbjct: 1103 RSDSIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
>gi|6677789 RNA polymerase 1-2 (128 kDa subunit) [Mus musculus]
>gi|2500625|sp|P70700|RPA2_MOUSE DNA-DIRECTED RNA
POLYMERASE I 135 KD POLYPEPTIDE (RNA POLYMERASE I SUBUNIT
2) (RPA135) >gi|11261308|pir||T42723 probable
DNA-directed RNA polymerase (EC 2.7.7.6) I second largest
chain - mouse >gi|1621594|gb|AAC52850.1| (U58280) second
largest subunit of RNA polymerase I [Mus musculus]
Length = 1135
Score = 434 bits (1103), Expect = e-120
Identities = 354/1182 (29%), Positives = 543/1182 (44%), Gaps = 131/1182 (11%)
Query: 3 GPTVVEVTPDDLWIVMESYWQEKG----LVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIP 58
GP++ +T I E Q+K L R H+DS+N GL V IP
Sbjct: 13 GPSLKHLTDPSYGIPPE---QQKAALQDLTRAHVDSFNYAALEGLSHAVQA-------IP 62
Query: 59 DFEVKFGKIRVG----EPEFQEPHGQRKPL------YPMDARIRNLTYSAPLYLEMIPVI 108
FE F R+ + P + + YP + R R TY L ++ +
Sbjct: 63 PFEFAFKDERISLTIVDAVISPPSVPKGTICKDLNVYPAECRGRKSTYRGRLTADISWAV 122
Query: 109 RGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSI 168
G+ + ++ +G +PIM+KSK+C LY L L + E+ ++ GGYFIING E+VI +
Sbjct: 123 NGVPKGIIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRML 182
Query: 169 EDIAPNRTLVEKDERQEKYIAKVFSYRHGYRALVTVERKKDGI---LYVGIPNVPKPVKF 225
I P R R K+ ++ Y ++ V + + L+ + N + F
Sbjct: 183 --IEPRRNFPVAMVRP-KWKSRGLGYTQFGVSMRCVREEHSAVNMNLHY-VENGTVMLNF 238
Query: 226 VY-----------VMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDIT------TQQ 268
+Y ++AL D I + E +++ I +Q+
Sbjct: 239 IYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQK 298
Query: 269 EALEYIG-----KLVAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALK 323
+ L Y+G KL P ++ AE++++ + H+ + K Y +M K
Sbjct: 299 QVLNYLGECFRVKLSLPDWYPN--VEAAEFLLNQGICIHL----QSNTDKFYLRCLMTRK 352
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
+ L+ G+ +D+ D N+ + G L + + I+ + K Q+
Sbjct: 353 LFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSIN 412
Query: 384 FGNIHRFIRNSIRPDVLTERIEHALATGAWPGGR-------TGVSQLLDRTNYVSTLSHL 436
N+ + LT E+ LATG +G+ + D+ N++ LSH
Sbjct: 413 NENLMKIFSMGTE---LTRPFEYLLATGNLRSKTGLGFLEDSGLCVVADKLNFLRYLSHF 469
Query: 437 RRV-TSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEE-E 494
R V + R L WG +CP TP+G CGL+ +L + ++ T +
Sbjct: 470 RCVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFGDTAS 529
Query: 495 VKEYLMSLGIVPIEVR--RPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDII 552
+ L LG+ + RP + + V L+GV++G ++ K L + R K+
Sbjct: 530 IPALLCGLGVTGADTAPCRPYSDCYPVLLDGVMVGWVD--KDLAPEVADTLRRFKVLREK 587
Query: 553 NVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRL-KWSDLVRMGVIE 611
+ + +V +I GKP L RL + + +G E
Sbjct: 588 RIPPWMEVA---------------LIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGREE 632
Query: 612 YLDAEEEENAYVAMWPWEVTEE-HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMA 670
+ E+ VA++ EV TH EL P ++L + A+ IP+ +HN +PRN Y M
Sbjct: 633 LIGTMEQLFMNVAIFEDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMG 692
Query: 671 KQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYN 730
KQ++G ++ R D + + L PQ PLV + ++ P G N +VAV++Y GY+
Sbjct: 693 KQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYD 752
Query: 731 MEDAIIINKASIERGLARSTFFRT--YEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRH 788
MEDA+I+NKAS ERG A + +++ + EK G F + R +
Sbjct: 753 MEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPR------VMQK 806
Query: 789 LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVD-- 846
LD+DGL +K+E D P + ++L V + E VVD
Sbjct: 807 LDDDGLPSIGAKLEYGD--------PYY------SYLNLNTGEGFVVYYKSKENCVVDNI 852
Query: 847 KVIITETGDGT-KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPD 905
KV + G G K + +TVR R P IGDKFASRHGQKG++ + P EDMP+TESG++PD
Sbjct: 853 KVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPD 912
Query: 906 LIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE----EKLRKELEELGFK 961
++ NPHG PSRMT+G L+E++ GK AAL G D T FI E E + L+ G+
Sbjct: 913 ILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYN 972
Query: 962 HTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRARE 1021
G E +Y GI+G EADIF+GV+YYQRL HMV+DK R+ G +T QP GR +
Sbjct: 973 FYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQ 1032
Query: 1022 GGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHI----------ALEDKR 1071
GG+RFGEMERD L+ HG + LL +RL SD++ VC CG + + R
Sbjct: 1033 GGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKPPPSWSAMR 1092
Query: 1072 RHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNL 1113
K C VCG + I V + Y F+ + EL AM I+ KL++
Sbjct: 1093 NRKYNCTVCGRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
>dbj|BAB14082.1| (AK022533) unnamed protein product [Homo sapiens]
Length = 1079
Score = 427 bits (1087), Expect = e-118
Identities = 334/1063 (31%), Positives = 506/1063 (47%), Gaps = 107/1063 (10%)
Query: 108 IRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVS 167
+ GI + ++ +G +PIM+KSK+C L L L + E+ ++ GGYFIING E+VI
Sbjct: 66 VNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRM 125
Query: 168 IEDIAPNRTLVEKDERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGI---PNVPKPVK 224
+ I P R R K+ + Y Y + R++ + + + N +
Sbjct: 126 L--IMPRRNFPIAMIRP-KWKTRGPGYTQ-YGVSMHCVREEHSAVNMNLHYLENGTVMLN 181
Query: 225 FVY-----------VMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDIT------TQ 267
F+Y ++AL D I + E L +++ I TQ
Sbjct: 182 FIYRKELFFRPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQ 241
Query: 268 QEALEYIG-----KLVAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMAL 322
++ L Y+G KL P + AE++ + + H+ + E K Y L +M
Sbjct: 242 KQVLNYLGECFRVKLNVPDWYPNEQA--AEFLFNQCICIHLKSNTE----KFYMLCLMTR 295
Query: 323 KVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKY 382
K+ L+ G+ ED+ D N+ + G L + + I+ K Q+
Sbjct: 296 KLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSM 355
Query: 383 VFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGR-------TGVSQLLDRTNYVSTLSH 435
N+ R I LT+ E+ ATG +G+ + D+ N++ LSH
Sbjct: 356 NTDNLMRIFTMGID---LTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSH 412
Query: 436 LRRVTSPLD-REQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTA-VPEE 493
R V D + R L WG +CP TP+G CGL+ +L + ++ T V
Sbjct: 413 FRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTA 472
Query: 494 EVKEYLMSLGIVPIE--VRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDI 551
+ L +LG+ PI+ R E + V L+GV++G ++ K L I R K+
Sbjct: 473 SIPALLCNLGVTPIDGAPHRSYSECYPVLLDGVMVGWVD--KDLAPGIADSLRHFKVLRE 530
Query: 552 INVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRL-KWSDLVRMGVI 610
+ + +V ++I GKP L RL + + +G
Sbjct: 531 KRIPPWMEV---------------VLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKE 575
Query: 611 EYLDAEEEENAYVAMWPWEV-TEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGM 669
E + E+ VA++ EV TH EL P ++L + A+ IP+ +HN +PRN Y M
Sbjct: 576 ELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM 635
Query: 670 AKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGY 729
KQ++G ++ R D + + L PQ PLV + ++ P G N +VAV++Y GY
Sbjct: 636 GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGY 695
Query: 730 NMEDAIIINKASIERGLARSTFFRT--YEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYR 787
+MEDA+I+NKAS ERG A + +++ + EK G + F I R +
Sbjct: 696 DMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPR------VLQ 749
Query: 788 HLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVD- 846
LD+DGL F +K++ D P + ++L + + E VVD
Sbjct: 750 KLDDDGLPFIGAKLQYGD--------PYY------SYLNLNTGESFVMYYKSKENCVVDN 795
Query: 847 -KVIITETGDGT-KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVP 904
KV +TG G K V++T+R R P IGDKFASRHG+KG++ + P EDMP+TESG+VP
Sbjct: 796 IKVCSNDTGSGKFKCVRITMRVPRNPTIGDKFASRHGRKGILSRLWPAEDMPFTESGMVP 855
Query: 905 DLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE----EKLRKELEELGF 960
D++ NPHG PSRMT+G L+E++ GK AAL G D T FI E E + L+ G+
Sbjct: 856 DILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGY 915
Query: 961 KHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAR 1020
G E +Y GI+G EADIF+GV+YYQRL HMV+DK R+ G +T QP GR
Sbjct: 916 NFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNV 975
Query: 1021 EGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHI----------ALEDK 1070
+GG+RFGEMERD L+ HG + LL +RL SD++ VC CG + +
Sbjct: 976 QGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAM 1035
Query: 1071 RRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNL 1113
R K C +C + I V + Y F+ + EL AM I+ KL++
Sbjct: 1036 RNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1078
>sp|P28365|RPA2_EUPOC DNA-DIRECTED RNA POLYMERASE I SECOND LARGEST SUBUNIT (RNA POLYMERASE
I SUBUNIT 2) >gi|2133436|pir||S70413 DNA-directed RNA
polymerase (EC 2.7.7.6) I second largest chain RPA2 -
Euplotes octocarinatus >gi|578407|emb|CAA47067.1|
(X66451) DNA-directed RNA polymerase [Euplotes
octocarinatus]
Length = 1166
Score = 426 bits (1084), Expect = e-118
Identities = 340/1185 (28%), Positives = 554/1185 (46%), Gaps = 130/1185 (10%)
Query: 25 KGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFG---------KIRVGEPEFQ 75
K + R H+DS++ + L + +P+ G +G+P
Sbjct: 17 KNIARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLTLWYDSFELGQPSLG 76
Query: 76 EPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLY 135
E LYP + R R +TY+ PL+ + + +V++G++P M + K C L
Sbjct: 77 EIDYDSHILYPSECRQRKMTYTIPLFATIFKKFDDEMVDNFKVKLGDIPTMGRKKFCNLK 136
Query: 136 GLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTL---------VEKDERQEK 186
GL+ EL + GED + GGYFI+NG+E+VI + I P R +E+ +
Sbjct: 137 GLTKKELAKRGEDMLEFGGYFIVNGNEKVIRML--IVPKRNFPIAFKRSKFLERGKDFTD 194
Query: 187 YIAKVFSYRHGYRA-LVTVERKKDGILYVGIPNVPKP--VKFVYVMRALGLERDKDIVDA 243
Y ++ R + A +T+ DG + + + + + + +++AL D+ I +
Sbjct: 195 YGVQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQKQEFLIPIILILKALKNCTDRQIYER 254
Query: 244 VGNDPEVQQILFDNLEDAS------DITTQQEALEYIG---KLVAPGQAREYRLKRAEYV 294
+ Q+ + D +E +I ++ IG ++V G E A
Sbjct: 255 IVKGNFNQRQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAGITSETSDIDAG-- 312
Query: 295 IDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDL-LK 353
D L HI + + K L +M K+ + + D+ D A + + L G L L+
Sbjct: 313 -DLFLSKHICIHTDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLLGGHLYLQ 371
Query: 354 DLFRVAFSQLVKDIQYQMTKTYQRRG-EKYVFGNIHRFIRNSIRPDVLTERIEHALATGA 412
L F L +++ ++ K +R + F ++ + + ++ +R+E+ LATG
Sbjct: 372 ILSEKLFDCLHINLRARLNKELKRHNFDPMKFRDVLTNQKINCGIGLIGKRMENFLATGN 431
Query: 413 WPGGR-------TGVSQLLDRTNYVSTLSHLRRV-TSPLDREQPHFEARDLHGTHWGRIC 464
+G + D+ N + LSH R + EQ R L WG IC
Sbjct: 432 LISRTNLDLMQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTTSVRKLLPESWGFIC 491
Query: 465 PTETPEGPNCGLVKNLALMAQITTAVPEEEV-----KEYLMSLGIVPIE---VRRPSPEL 516
P TP+G CGL+ +++ M+ + E+++ + L LG+ I
Sbjct: 492 PVHTPDGAPCGLLNHIS-MSCVPIGSEEKQIDIDKFRNILGELGMNSISSDLCLNYHTGY 550
Query: 517 WRVYLNGVIIGTIED--GKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRR 574
+ V +G+ +G +E G++ VE ++ + + D + ++ + + ++
Sbjct: 551 YPVIFDGIHLGYVEKDIGESFVEGLRYLKCTQSQPDYA-IPRTLEIAFIPFSGYSRNLQW 609
Query: 575 PLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEH 634
P I + + + T+ +K + IE++ E+ N +A ++T E
Sbjct: 610 PGIFLASTPARFTRP----VKN--------LHYNCIEWISPLEQMNLSIACTDEDITPET 657
Query: 635 THLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHY 694
TH EL P IL + AS+ + E+N +PRN Y MAKQ++G + N + R D + + L +
Sbjct: 658 THQELDPINILSIVASVGVFAEYNQSPRNMYQCQMAKQTMGTPYHNHQFRTDNKIYRLLF 717
Query: 695 PQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRT 754
P P+V +R E+ P+G N VVAV++Y GY++EDA+IINK+S ERG +++
Sbjct: 718 PHRPIVKTRTQVDFDIEEYPSGTNAVVAVISYTGYDLEDAMIINKSSYERGFGHGVVYKS 777
Query: 755 YEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPP 814
Y D E S + RG + Y+ L+ + + K + K I P
Sbjct: 778 YTH----------DLNESNSQSTRGIKSSVRYKFLNN---VSQKDKSKIKLENIDPDGLP 824
Query: 815 RFLEERGLGAVSL-----QERRETSVAVRPSERGVVDKVIITETGDGTK---LVKVTVRD 866
+ + G L +R + SE+ ++ V + D + T+R
Sbjct: 825 KIGSQLTKGKPELCIFDTLKRGAKLSKFKDSEKARIETVRVCGNDDKNPDNLSIGYTIRY 884
Query: 867 LRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAI 926
RIP IGDKF+SRHGQKGV+ ++ PQ DMP+TE+GI PDLI+NPH PSRMT+G L++++
Sbjct: 885 SRIPVIGDKFSSRHGQKGVLSVLWPQVDMPFTENGITPDLIINPHAFPSRMTMGMLIQSM 944
Query: 927 GGKVAALKG--------RRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFE 978
K +L+G +R D +G KEL + GF + G E+MY GI G +
Sbjct: 945 AAKSGSLRGEFKTVETFQRYDDNDIVGH----FGKELLDKGFNYHGNELMYSGIFGTPLK 1000
Query: 979 ADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHG 1038
ADIF+GV+YYQRL HMV+DK AR GP+ +LT QP +GR + GG+RFGEMERD L+ HG
Sbjct: 1001 ADIFIGVVYYQRLRHMVSDKSQARGTGPIDILTHQPVKGRKKGGGIRFGEMERDSLLAHG 1060
Query: 1039 AAMLLIERLLEESDKTEVWVCENCGHIA-------------------------LEDKRRH 1073
AA L +RL SD +E +VC+NCG I EDK H
Sbjct: 1061 AAYCLNDRLFRSSDYSEGFVCQNCGSILSCYVNRAIMKTQTFIPPSLDESNKDTEDKEIH 1120
Query: 1074 ---KVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTE 1115
KV C VC + KV + + + L +EL +M I+ K + +
Sbjct: 1121 MNEKVICKVCKKNSNCKKVALPFVLRFLANELASMGIKLKFTVND 1165
>pir||T20870 hypothetical protein F14B4.3 - Caenorhabditis elegans
>gi|3875865|emb|CAA99827.1| (Z75535) contains similarity
to Pfam domain: PF00562 (RNA polymerase beta subunit),
Score=1281.0, E-value=0, N=1~cDNA EST yk4a6.3 comes from
this gene~cDNA EST yk2c1.3 comes from this gene~cDNA EST
yk2c1.5 comes from this gene~cDNA EST yk4a6.5 comes fr>
Length = 1127
Score = 423 bits (1075), Expect = e-117
Identities = 332/1169 (28%), Positives = 540/1169 (45%), Gaps = 145/1169 (12%)
Query: 31 HLDSYNAFIDRGLQEVVDEFGGIKPDIPDFE---VKFGKIRVGEPEFQ---EPHGQRKPL 84
H+DS++ + +G Q K + + + +KF ++ +P + PL
Sbjct: 9 HVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLPL 68
Query: 85 YPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQ 144
P + R R LTY+ L + + + G + +E+ +G++PIML+S+ C L G+S EL
Sbjct: 69 LPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELVV 128
Query: 145 LGEDPKDPGGYFIINGSERVIVSIEDIAPN-------RTLVEKDERQEKYIAKVFSYRHG 197
GE+P + GGYFI+NGSE+VI + N +T EK + ++ + S +
Sbjct: 129 AGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKEN 188
Query: 198 YRA-LVTVERKKDGILYVGIPNVPKP--VKFVYVMRALGLERDKDIVDAV----GNDPEV 250
+ A ++T+ G + + + + V +Y+++AL + D I D
Sbjct: 189 HTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRNQDQFY 248
Query: 251 QQILFDNLEDASD--ITTQQEALEYIGKL--------VAPGQAREYRLKRAEYVIDNNLL 300
+ + L + I Q+ A+ IG VAP E L+ ++I +L
Sbjct: 249 SSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPW---EDDLEAGRFIIRECVL 305
Query: 301 PHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAF 360
H+ E K + L M K+I L G+ + D+ + ++G +L + R
Sbjct: 306 IHLDSDEE----KFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERM 361
Query: 361 SQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGG---- 416
++ ++ ++ R+ I + + N ++ T + + LATG
Sbjct: 362 ENIIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEI-TRGMAYFLATGNLVTRVGLA 420
Query: 417 ---RTGVSQLLDRTNYVSTLSHLRRV-TSPLDREQPHFEARDLHGTHWGRICPTETPEGP 472
+G S + +R N + +SH R + E + R L WG ICP TP+G
Sbjct: 421 LQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGA 480
Query: 473 NCGLVKNLALMAQITTAVPEEE-VKEYLMSLGIVP---IEVRRPSPELWRVYLNGVIIGT 528
CGL+ ++ +I T + + V L LG+ + + P EL+ V +NG +G
Sbjct: 481 PCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGY 540
Query: 529 IEDGKAL-VER------IKKDRRSGKISDIINVAYYEDVREV-------YVNSDDGRVRR 574
+ KA +ER + KD R S+I V D++ + Y+ SD GR+ R
Sbjct: 541 VPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIR 600
Query: 575 PLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEH 634
P V N + M +E++ E+ V + P E
Sbjct: 601 P---VRN-----------------------LAMDAVEHIGTFEQVYLSVVLDPEEAEPGV 634
Query: 635 T-HLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLH 693
T H EL P+ + +LIP+P+HN +PRN Y M KQ++G + R D + + L
Sbjct: 635 TMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQ 694
Query: 694 YPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFR 753
+PQ P++ + ++ P G N VAV++Y GY+MEDA+ INKAS +RG A T +
Sbjct: 695 FPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIK 754
Query: 754 TYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSP 813
E+ L + ++ I +YR+ E E K G D G P
Sbjct: 755 V----ERINLVTERERKTI------------FYRNPRE------EIKTVGPD---GLPIP 789
Query: 814 PR--FLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRI-- 869
R FL+E +++ + +E V I E G+G K + RI
Sbjct: 790 GRRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQWRIER 849
Query: 870 -PEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGG 928
P IGDKFASRHGQKG+ + P E +P++E+G+VPD+I NPHG PSRMT+G ++E++ G
Sbjct: 850 NPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAG 909
Query: 929 KVAALKGRRVDGTAFIGEPEEKLRKELEEL----GFKHTGREIMYDGITGKRFEADIFVG 984
K AA G D + F+ + EL G+ + G E Y G+ G++ E IF G
Sbjct: 910 KAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFG 969
Query: 985 VIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLI 1044
++YYQRL HM+ADK R+ GP+ +T QP +GR + GG+RFGEMERD ++ HG + +L
Sbjct: 970 IVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQ 1029
Query: 1045 ERLLEESDKTEVWVCENCGHI------------ALEDKRR--------HKVYCPVCGEEE 1084
+RLL SD+ + C CG + L+ KR+ C C +++
Sbjct: 1030 DRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQRCRTCDKDD 1089
Query: 1085 RISKVEMSYAFKLLLDELKAMVIRPKLNL 1113
++ +++ F+ L EL AM ++ KL +
Sbjct: 1090 QVFLLQVPRVFRYLTAELAAMNVKIKLGI 1118
>gb|AAC08937.1| (AF041852) RPB140 [Chloranthus spicatus]
Length = 533
Score = 422 bits (1073), Expect = e-116
Identities = 225/537 (41%), Positives = 333/537 (61%), Gaps = 22/537 (4%)
Query: 482 LMAQITTAVPEEEVKEYLMSLGIVPIEVRRPS--PELWRVYLNGVIIGTIEDGKALVERI 539
LM IT + E+L E P+ P+ ++++NG +G + + LV+ +
Sbjct: 1 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 60
Query: 540 KKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRL 599
++ RR ++ + V ++E+ + +D GR RPL IVE + + K+ ++A+++
Sbjct: 61 RQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRET 120
Query: 600 K---WSDLVRMGVIEYLDAEEEENAYVAMW----------PWEV-TEEHTHLELMPAAIL 645
+ W DLV G IEY+D EEEE ++M P E +E +TH E+ P+ IL
Sbjct: 121 QEEGWHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPEEAYSETYTHCEIHPSLIL 180
Query: 646 GLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIM 705
G+ AS+IP+P+HN +PRNTY + M KQ++G+ N+++R+DT ++L+YPQ PLV +R M
Sbjct: 181 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAM 240
Query: 706 KAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGG 765
+ + + PAG N +VA+ Y GYN ED++I+N++SI+RG RS FFR+Y EEKK G
Sbjct: 241 EHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKM--G 298
Query: 766 QTDKFEIPSPTVRGYRGEKY--YRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLG 823
K + P G ++ Y LD+DGL P ++V G+DV+IG+T+P ++ G
Sbjct: 299 TLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTP--IAQDETQG 356
Query: 824 AVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQK 883
S RR+ S ++R SE G+VD+V++T DG + VKV +R +R+P+IGDKF+SRHGQK
Sbjct: 357 QASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQK 416
Query: 884 GVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAF 943
G +G+ QEDMPWT GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F
Sbjct: 417 GTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPF 476
Query: 944 IGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIH 1000
+ + K L + G++ G E MY+G TG++ A IF+G YYQRL HMV DKIH
Sbjct: 477 TDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIH 533
>pir||T50394 DNA-directed RNA polymerase subunit [imported] - fission yeast
(Schizosaccharomyces pombe) >gi|6723961|emb|CAB66435.1|
(AL136535) DNA-directed RNA polymerase subunit
[Schizosaccharomyces pombe]
Length = 1227
Score = 414 bits (1054), Expect = e-114
Identities = 319/1107 (28%), Positives = 523/1107 (46%), Gaps = 109/1107 (9%)
Query: 28 VRQHLDSYNAFIDRGL--------------QEVVDEFGGIKPDIPDFEVKFGKIRVGEPE 73
V+ H+DS+NA + GL + E GG + ++++ +P
Sbjct: 82 VKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGALKFGNKISFRVDEVQIAKPM 141
Query: 74 F--QEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKV 131
+E + +YP +AR R TY + L L+ + G ++ +G +PIM++S
Sbjct: 142 LSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQSEMREVGMIPIMVRSNR 201
Query: 132 CRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNR---------TLVEKDE 182
C L GLS EL E+ ++ GGYFI+NG E++I + I P R + +
Sbjct: 202 CHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRML--ILPKRNHPTAIIRPSFANRGT 259
Query: 183 RQEKYIAKVFSYRHGYRALV-TVERKKDGILYVGIPNVPKP--VKFVYVMRALGLERDKD 239
+Y + R +L T+ +G+ + + +++AL DK+
Sbjct: 260 SYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEYLIPSMMILKALLETSDKE 319
Query: 240 IVDAVGNDPEVQQILFDNLE------DASDITTQQEALEYIGKL--VAPGQAREYR-LKR 290
I + + L D +E + + +Q E L+Y+G V G A + ++
Sbjct: 320 IFEGIVGKDLGNTFLTDRVELMLRAYKSYGLYSQTETLQYLGSKFRVVLGVAEDLTDVEV 379
Query: 291 AEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGD 350
+++ +L H+ + +D+ R + M K+ L G+ D+ D ++ + L G
Sbjct: 380 GRFLLQKVVLVHLREA-KDKFRLLLF---MIRKLYALVAGECCADNPDSPQHQEILLGGF 435
Query: 351 LLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIR--NSIRPDVLTERIEHAL 408
L + + + I+ Q+ +R F + R + I D+ T ++++ L
Sbjct: 436 LYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFSDRKYLTRVFSKINNDIGT-KLQYFL 494
Query: 409 ATGAWPGGR-------TGVSQLLDRTNYVSTLSHLRRV-TSPLDREQPHFEARDLHGTHW 460
+TG TG + + ++ N+ LSH R V E R L W
Sbjct: 495 STGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTTVRKLLPEAW 554
Query: 461 GRICPTETPEGPNCGLVKNLALMAQITTAVPE-EEVKEYLMSLGIVPIEVRRPSPELWRV 519
G +CP TP+G CGL+ +LA +I T + ++ L+SLG+ P V V
Sbjct: 555 GFMCPVHTPDGSPCGLLNHLARKCEIVTHPSDVSQIPSLLLSLGVDPPSVVGHESGWGCV 614
Query: 520 YLNGVIIG--TIEDGKALVERIKKDR-------RSGKISDIINVAYYEDVREVYVNSDDG 570
L+G I+G T + K + + ++ + R+G ++ V D+ YV
Sbjct: 615 QLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAKVPL--DLEIGYVPPSHN 672
Query: 571 RVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEV 630
L + N V+ +K + G ++ L E+ +A +P E+
Sbjct: 673 GQYPGLYLFSN-----PARMVRPVKH--------ISTGELDMLGPFEQVYMDIACFPKEI 719
Query: 631 TEE-HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRG 689
+ TH+E P +L + A++ P+ + N +PRN Y M KQ++G R R D +
Sbjct: 720 VPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDNKL 779
Query: 690 HLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARS 749
+ L Q P+V ++ G + P G N VVAV++Y GY+MEDA+I+NK++ ERG
Sbjct: 780 YRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYG 839
Query: 750 TFFR--TYEAEEKKYLGGQTDKFE--IPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKD 805
T ++ +++ +K+ G P T R ++ + LD DGL F K+E D
Sbjct: 840 TVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPR----REWLQKLDADGLPFIGIKLEDGD 895
Query: 806 VLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVII--TETGDGT-KLVKV 862
++ + E G + +E G VD+V + + GD + + V
Sbjct: 896 PIVAY-----YDESTGQNFIE---------TYHGTEPGFVDEVRLLGNDVGDSECQQIHV 941
Query: 863 TVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQL 922
+R R P IGDKF+SRHGQKG+ P DMP+TESG+ PD+I+NPH PSRMT+G
Sbjct: 942 KLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMF 1001
Query: 923 LEAIGGKVAALKGRRVDGTAFIGEPEEKLR----KELEELGFKHTGREIMYDGITGKRFE 978
+E++ GK A G D T FI ++ ++L + G+ + G E MY GITG+ +
Sbjct: 1002 IESLAGKAGACHGLAQDSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEMK 1061
Query: 979 ADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHG 1038
ADI++GV+YYQRL HMV+DK R+ GP+ LT+QP +GR R GG+RFGEMERD ++GHG
Sbjct: 1062 ADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHG 1121
Query: 1039 AAMLLIERLLEESDKTEVWVCENCGHI 1065
+ L+ +RL+ SD + WVC +CG I
Sbjct: 1122 TSFLMQDRLMNCSDYAQSWVCRDCGSI 1148
>sp|P20028|RPA2_DROME DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (RNA POLYMERASE I
SUBUNIT 2) >gi|84933|pir||JQ0354 DNA-directed RNA
polymerase (EC 2.7.7.6) I second largest chain - fruit
fly (Drosophila melanogaster) >gi|8474|emb|CAA35185.1|
(X17298) RNA polymerase 3, second largest subunit
[Drosophila melanogaster]
Length = 1129
Score = 411 bits (1044), Expect = e-113
Identities = 327/1150 (28%), Positives = 526/1150 (45%), Gaps = 125/1150 (10%)
Query: 31 HLDSYNAFIDRGLQEVVDEF---GGIKPDIPDFEVKFGKIRVGEPEFQEP--HGQRKPLY 85
H+DS++ + GL + P +K I + +P+ + + + +Y
Sbjct: 39 HVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVRTREIY 98
Query: 86 PMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQL 145
P D+R +++YS + + + G+++ P+ + +GE+PIML+SK C L + +E+ +
Sbjct: 99 PTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKH 158
Query: 146 GEDPKDPGGYFIINGSERVIVSI--------------------EDIAPNRTLVEKDERQE 185
GE + GG F+I G+E+++ + ++ + LV+ E
Sbjct: 159 GEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDE 218
Query: 186 KYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPV-----KFVYVMRALGLERDKDI 240
++ V Y + A K + YV + + K + + +Y G E D+
Sbjct: 219 SSLSNVVHYLNNGTAKFMFSHVKR-LSYVPVCLILKCLMDYTDEEIYNRLVQGYESDQYY 277
Query: 241 VDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLL 300
V V Q + +++ ++ T + +IG L + + V D L
Sbjct: 278 VSCV-------QAMLREVQN-ENVYTHAQCKSFIGNLFRARFPEVPEWQPDDDVTDFILR 329
Query: 301 PHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAF 360
+ + + K + M K+ + + GK ++ D + + L G L +
Sbjct: 330 ERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSSMMQEVLLPGHLYQKYLSERV 389
Query: 361 SQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGV 420
V ++ + K + + +R + + IE LATG RTG+
Sbjct: 390 ESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQA---GGVGRAIESFLATGNI-ASRTGL 445
Query: 421 SQL--------LDRTNYVSTLSHLRRV-TSPLDREQPHFEARDLHGTHWGRICPTETPEG 471
+ + N + +SH R + EAR L WG ICP TP+G
Sbjct: 446 GLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDG 505
Query: 472 PNCGLVKNLALMAQITTAVPEEEVK---EYLMSLGIVPIEVRRPSPE-LWRVYLNGVIIG 527
CGL+ +L L +I+ + VK ++L+ +G++P+ RR E L+ V+L+G +G
Sbjct: 506 TPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSNRRYLGEKLYVVFLDGKHLG 565
Query: 528 TIEDGKA--LVERIKKDRRSGKISDIINVAYYEDVRE-----VYVNSDDGRVRRPLIIVE 580
I +A +V+ ++ + G + ++ + + + +Y+ + R+ RP+
Sbjct: 566 HIHQSEAEKIVDELRYGKIFGTLPQMMEIGFIPFKKNGQFPGLYIATGPARLMRPV---- 621
Query: 581 NGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELM 640
LKW + +G +E L E +A M+P + THLEL
Sbjct: 622 ----------------WNLKWKRVEYIGTLEQLYMEIAIDAK-EMYP----DFTTHLELA 660
Query: 641 PAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLV 700
+ A+LIP P++N +PRN Y M KQ++G N+ + + + L P PL
Sbjct: 661 KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLF 720
Query: 701 NSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEK 760
+ +D G N +VAV++Y GY+MEDA+IINKA+ ERG A + ++T
Sbjct: 721 RPVHYDIIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKT------ 774
Query: 761 KYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEER 820
K+L DK S R + +HLD DGL P SK+ G F E
Sbjct: 775 KFL--TLDKKS--SYFARHPHMPELIKHLDTDGLPHPGSKLS-----YGSPLYCYFDGEV 825
Query: 821 GLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRH 880
V + +E + + G D TK+V +T+R R IGDKFASR
Sbjct: 826 ATYKVVKMDEKEDCIVESIRQLGSFDL-------SPTKMVAITLRVPRPATIGDKFASRA 878
Query: 881 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDG 940
GQKG+ P ED+P+TESG++PD++ NPHG PSRMT+ ++E + GK AA+ G D
Sbjct: 879 GQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDA 938
Query: 941 TAFIGEPE----EKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVA 996
T F E + K LE G+ + G E +Y G+ G+ ADIF GV++YQRL HMV
Sbjct: 939 TPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVF 998
Query: 997 DKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEV 1056
DK RS G V+ T QP +GR R GG+RFGEMERD L+ HGAA LL +RL SDKT
Sbjct: 999 DKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHT 1058
Query: 1057 WVCENCGHIALEDKRRHK-----------VYCPVCGEEERISKVEMSYAFKLLLDELKAM 1105
VC CG I +R K C +CG+ +S +E+ ++FK L+ EL ++
Sbjct: 1059 LVCHKCGSILAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSV 1118
Query: 1106 VIRPKLNLTE 1115
I + L E
Sbjct: 1119 NINARFKLNE 1128
>gb|AAF51503.1| (AE003589) RpI135 gene product [Drosophila melanogaster]
Length = 1129
Score = 408 bits (1037), Expect = e-112
Identities = 326/1150 (28%), Positives = 525/1150 (45%), Gaps = 125/1150 (10%)
Query: 31 HLDSYNAFIDRGLQEVVDEF---GGIKPDIPDFEVKFGKIRVGEPEFQEP--HGQRKPLY 85
H+DS++ + GL + P +K I + +P+ + + + +Y
Sbjct: 39 HVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVRTREIY 98
Query: 86 PMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQL 145
P D+R +++YS + + + G+++ P+ + +GE+PIML+SK C L + +E+ +
Sbjct: 99 PTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKH 158
Query: 146 GEDPKDPGGYFIINGSERVIVSI--------------------EDIAPNRTLVEKDERQE 185
GE + GG F+I G+E+++ + ++ + LV+ E
Sbjct: 159 GEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDE 218
Query: 186 KYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPV-----KFVYVMRALGLERDKDI 240
++ V Y + A K + YV + + K + + +Y G E D+
Sbjct: 219 SSLSNVVHYLNNGTAKFMFSHVKR-LSYVPVCLILKCLMDYTDEEIYNRLVQGYESDQYY 277
Query: 241 VDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLL 300
V V Q + +++ ++ T + +IG L + + V D L
Sbjct: 278 VSCV-------QAMLREVQN-ENVYTHAQCKSFIGNLFRARFPEVPEWQPDDDVTDFILR 329
Query: 301 PHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAF 360
+ + + K + M K+ + + GK ++ D + + L G L +
Sbjct: 330 ERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERV 389
Query: 361 SQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGV 420
V ++ + K + + +R + + IE LATG RTG+
Sbjct: 390 ESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQA---GGVGRAIESFLATGNI-ASRTGL 445
Query: 421 SQL--------LDRTNYVSTLSHLRRV-TSPLDREQPHFEARDLHGTHWGRICPTETPEG 471
+ + N + +SH R + EAR L WG ICP TP+G
Sbjct: 446 GLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDG 505
Query: 472 PNCGLVKNLALMAQITTAVPEEEVK---EYLMSLGIVPIEVRRPSPE-LWRVYLNGVIIG 527
CGL+ +L L +I+ + VK ++L+ +G++P+ RR E L+ V+L+G +G
Sbjct: 506 TPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSNRRYLGEKLYVVFLDGKHLG 565
Query: 528 TIEDGKA--LVERIKKDRRSGKISDIINVAYYEDVRE-----VYVNSDDGRVRRPLIIVE 580
I +A +V+ ++ + G + ++ + + + +Y+ + R+ RP+
Sbjct: 566 HIHQSEAEKIVDELRYGKIFGTLPQMMEIGFIPFKKNGQFPGLYIATGPARMMRPV---- 621
Query: 581 NGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELM 640
LKW + +G +E L E +A M+P + THLEL
Sbjct: 622 ----------------WNLKWKRVEYIGTLEQLYMEIAIDAK-EMYP----DFTTHLELA 660
Query: 641 PAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLV 700
+ A+LIP P++N +PRN Y M KQ++G N+ + + + L P PL
Sbjct: 661 KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLF 720
Query: 701 NSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEK 760
+ +D G N +VAV++Y GY+MEDA+IINKA+ ERG A + ++T
Sbjct: 721 RPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKT------ 774
Query: 761 KYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEER 820
K+L DK S R + +HLD DGL P SK+ G F E
Sbjct: 775 KFL--TLDKKS--SYFARHPHMPELIKHLDTDGLPHPGSKLS-----YGSPLYCYFDGEV 825
Query: 821 GLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRH 880
V + +E + + G D K+V +T+R R IGDKFASR
Sbjct: 826 ATYKVVKMDEKEDCIVESIRQLGSFDL-------SPKKMVAITLRVPRPATIGDKFASRA 878
Query: 881 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDG 940
GQKG+ P ED+P+TESG++PD++ NPHG PSRMT+ ++E + GK AA+ G D
Sbjct: 879 GQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDA 938
Query: 941 TAFIGEPE----EKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVA 996
T F E + K LE G+ + G E +Y G+ G+ ADIF GV++YQRL HMV
Sbjct: 939 TPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVF 998
Query: 997 DKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEV 1056
DK RS G V+ T QP +GR R GG+RFGEMERD L+ HGAA LL +RL SDKT
Sbjct: 999 DKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHT 1058
Query: 1057 WVCENCGHIALEDKRRHK-----------VYCPVCGEEERISKVEMSYAFKLLLDELKAM 1105
VC CG I +R K C +CG+ +S +E+ ++FK L+ EL ++
Sbjct: 1059 LVCHKCGSILAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSV 1118
Query: 1106 VIRPKLNLTE 1115
I + L E
Sbjct: 1119 NINARFKLNE 1128
>gi|6325267 RNA polymerase I subunit A135; Rpa135p [Saccharomyces cerevisiae]
>gi|133320|sp|P22138|RPA2_YEAST DNA-DIRECTED RNA
POLYMERASE I 135 KD POLYPEPTIDE (A135) (RNA POLYMERASE I
SUBUNIT 2) >gi|101446|pir||A39607 DNA-directed RNA
polymerase (EC 2.7.7.6) I 135K chain - yeast
(Saccharomyces cerevisiae) >gi|172464|gb|AAA34993.1|
(M62804) RNA polymerase I (second largest subunit)
[Saccharomyces cerevisiae] >gi|887587|emb|CAA90154.1|
(Z49919) Rpa2p [Saccharomyces cerevisiae]
>gi|939744|gb|AAA97589.1| (U31900) Rpa135p [Saccharomyces
cerevisiae] >gi|1314085|emb|CAA95050.1| (Z71255) Rpa2p
[Saccharomyces cerevisiae]
Length = 1203
Score = 392 bits (997), Expect = e-107
Identities = 315/1057 (29%), Positives = 500/1057 (46%), Gaps = 138/1057 (13%)
Query: 82 KPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVR-IGELPIMLKSKVCRLYGLSDD 140
+ +YP ++R R +Y L L++ + E+ EVR G LP+ML+S C L +S
Sbjct: 119 RKVYPSESRQRLTSYRGKLLLKLKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPY 178
Query: 141 ELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYIAKVF-----SYR 195
EL Q E+ + GGYFI+NG E++I + +V++ I F SY
Sbjct: 179 ELVQHKEESDEIGGYFIVNGIEKLIRML--------IVQRRNHPMAIIRPSFANRGASYS 230
Query: 196 H---GYRALVTVERKKDGIL-YVGIPNVPKP---------VKFVYVMRALGLERDKDIVD 242
H R++ + + +L Y+ V V V +++AL D++I D
Sbjct: 231 HYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFD 290
Query: 243 AV-GNDPEVQQILFDNLE--------DASDITTQQEALEYIG---KLVAPGQAREYRLKR 290
+ GND + L D LE + + + L+Y+G ++V + L+
Sbjct: 291 GIIGNDVK-DSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEV 349
Query: 291 AEYVIDNNLLPHIGVS-PEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAG 349
+ V+D +L H+G +D+ R + M K+ L G+ D+ D ++ + L G
Sbjct: 350 GQEVLDRIVLVHLGKDGSQDKFRMLLF---MIRKLYSLVAGECSPDNPDATQHQEVLLGG 406
Query: 350 DLLKDLFRVAFSQLVKDIQYQMTKTYQR------RGEKYVFGNIHRFIRNSIRPDVLTER 403
L + + + +++I Q+ R + ++Y+ + R N + +
Sbjct: 407 FLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNEN------IGSK 460
Query: 404 IEHALATGAWPGGR-------TGVSQLLDRTNYVSTLSHLRRV-TSPLDREQPHFEARDL 455
+++ L+TG +G + + ++ N+ +SH R V + R L
Sbjct: 461 MQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKL 520
Query: 456 HGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPE-EEVKEYLMSLGIVPIE-VRRPS 513
WG +CP TP+G CGL+ + A +I+T + + L SLG+ P
Sbjct: 521 LPESWGFLCPVHTPDGSPCGLLNHFAHKCRISTQQSDVSRIPSILYSLGVAPASHTFAAG 580
Query: 514 PELWRVYLNGVIIGTI--EDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGR 571
P L V ++G IIG + E GK + + ++ + GK + D+ YV R
Sbjct: 581 PSLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPI-----DLEIGYVPPST-R 634
Query: 572 VRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVT 631
+ P + + G ++ ++ ++ L D+V Y++ +A+ P E+
Sbjct: 635 GQYPGLYLFGGHSRM----LRPVRYLPLDKEDIVGPFEQVYMN--------IAVTPQEIQ 682
Query: 632 EE-HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGH 690
HTH+E P IL + A+L P+ + N +PRN Y M KQ++G R D + +
Sbjct: 683 NNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLY 742
Query: 691 LLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARST 750
L Q P+V + + G ++ P G N VVAV++Y GY+M+DA+IINK++ ERG T
Sbjct: 743 RLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGT 802
Query: 751 FFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRH----LDEDGLIFPESKVEGKDV 806
++T EK L ++ + P G+ +++ + LDEDGL + + VE D
Sbjct: 803 MYKT----EKVDLALNRNRGD-PITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDP 857
Query: 807 LIG--------------RTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITE 852
+ +S P ++EE L + +E
Sbjct: 858 ICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQE-------------------- 897
Query: 853 TGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHG 912
+ V + R R P+IGDKF+SRHGQKGV P DMP++E+GI PD+I+NPH
Sbjct: 898 ----LQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHA 953
Query: 913 IPSRMTVGQLLEAIGGKVAALKGRRVDGTAFI----GEPEEKLRKELEELGFKHTGREIM 968
PSRMT+G +E++ GK AL G D T +I P + ++L + G+ + G E M
Sbjct: 954 FPSRMTIGMFVESLAGKAGALHGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPM 1013
Query: 969 YDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGE 1028
Y G TG+ ADI+VGV+YYQRL HMV DK RS GPV LT QP +GR R GG+R GE
Sbjct: 1014 YSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGE 1073
Query: 1029 MERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHI 1065
MERD L+GHG + LL +RLL SD T+ VC CG I
Sbjct: 1074 MERDALIGHGTSFLLQDRLLNSSDYTQASVCRECGSI 1110
>emb|CAB86470.1| (AL163481) dna-directed rna polymerase ii 138 kd polypeptide
[Schizosaccharomyces pombe]
Length = 728
Score = 392 bits (997), Expect = e-107
Identities = 243/688 (35%), Positives = 374/688 (54%), Gaps = 77/688 (11%)
Query: 9 VTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFG-----------GIKPDI 57
+T +D W V+ S+++E L RQ L S++ F+ +QE+VD+ G + D+
Sbjct: 12 LTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDV 71
Query: 58 PD-FEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEM-----------I 105
+E+ FG+I + P E G ++P +AR+RNLTYS+PLY++M +
Sbjct: 72 TRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNV 131
Query: 106 PV------IRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIIN 159
P+ + ++EP +V IG++PIML+S C L G+SD EL L E P D GGYFIIN
Sbjct: 132 PIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIIN 191
Query: 160 GSERVIVSIEDIAPNRTLVEKDERQEK--YIAKVFS-YRHGYRALVTVERK--------K 208
GSE+VI++ E A N V K Y+A++ S G R + +++ K
Sbjct: 192 GSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENS 251
Query: 209 DGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDP---EVQQILFDNLEDASDIT 265
+ +P + + V V RALG+ D+DI++ + DP ++ +++ +E+A I
Sbjct: 252 GQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFVIQ 311
Query: 266 TQQEALEYIGKLVAP-GQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKV 324
+ AL+YIGK + G RE RL+ A ++ LLPHI RKA++LG M ++
Sbjct: 312 DKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRM 371
Query: 325 IELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVF 384
+ +L +R+ DD+DH+ KRL LAG LL LFR+ F ++ +D+ M K + E
Sbjct: 372 LLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNREFN-- 429
Query: 385 GNIHRFIRNSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTLSHLRR 438
+ +++ +++T + ++LATG W R GVSQ+L+R + STLSHLRR
Sbjct: 430 ------LTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRR 483
Query: 439 VTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEY 498
+P+ R+ + R LH THWG +CP ETPEG CGLVKNL+LM+ ++ P + E+
Sbjct: 484 TNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEF 543
Query: 499 LMSLGIVPIEVRRP--SPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAY 556
L G+ +E P SP +V++NGV +G D L E ++ RR IS +++
Sbjct: 544 LEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVR 603
Query: 557 YEDVREVYVNSDDGRVRRPLIIVEN-------GKPKLTKEHVQAI----------KEGRL 599
+E+ + +D GR+ RPL IV+N G+ + KEH+Q + E R
Sbjct: 604 DIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRF 663
Query: 600 KWSDLVRMGVIEYLDAEEEENAYVAMWP 627
W+ LV G+IEYLDAEEEE +AM P
Sbjct: 664 GWTALVSSGLIEYLDAEEEETVMIAMSP 691
>gi|9628161 RNA polymerase subunit 2 [African swine fever virus]
>gi|1173143|sp|P42487|RPO2_ASFB7 DNA-DIRECTED RNA
POLYMERASE SUBUNIT 2 >gi|7460259|pir||S78061 DNA-directed
RNA polymerase (EC 2.7.7.6) II - African swine fever
virus >gi|311528|emb|CAA79698.1| (Z21490) RNA polymerase
second largest subunit [African swine fever virus]
>gi|780423|gb|AAA65283.1| (U18466) RNA polymerase subunit
2 [African swine fever virus] >gi|1097443|prf||2113434BD
RNA polymerase:SUBUNIT=2 [African swine fever virus]
Length = 1242
Score = 386 bits (980), Expect = e-106
Identities = 333/1237 (26%), Positives = 557/1237 (44%), Gaps = 145/1237 (11%)
Query: 8 EVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPD-------- 59
E+T D+ + + GL+ ++ S++ +D G+ ++V + + D
Sbjct: 20 ELTEADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEID 79
Query: 60 -------FEVKFGKIRVGEPEFQE-PHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRG- 110
+ F + + P+ + G + L P AR+ L+YS P+ L ++
Sbjct: 80 KLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGPVNLAAEVILTAH 139
Query: 111 -------IEQEPVE-VRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSE 162
+++ + ++ PIM S C + LS +++GEDP +PGGYFI G E
Sbjct: 140 YSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPGGYFIARGGE 199
Query: 163 RVIVSIEDIAPNRTLVEKDERQE---KYIAKVFSYRHG----YRALVTVERKKDGILYVG 215
V+ +E+I N + Q+ + I F + G + + + G + +
Sbjct: 200 WVVDLLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYMTTGAITIE 259
Query: 216 IPNVPKP---VKFVYVMRALGLERDKDIVDAVGNDPE----VQQILFDNLEDASDIT--- 265
I + + + + R G+ D I++ V D E V + + LE + +
Sbjct: 260 INSTKFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTFMIEILEKSIHVLDPI 319
Query: 266 --------TQQEALEYIGKLVAP-----------GQAREYRLKRAEYVIDNNLLPHIGVS 306
+++ ++++ + V+ A +Y +R ++D LLPH+G +
Sbjct: 320 FQPVQHEPNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQLTILDKILLPHMGQT 379
Query: 307 PEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQ---- 362
+ R+RK +LG++ K++ + + D+D Y KR+ +G L F+ F+
Sbjct: 380 ADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNTSVIA 439
Query: 363 -LVKDIQYQMTKT-YQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATG-------AW 413
++ + + +T ++ ++ + + + D L +E ++ +G
Sbjct: 440 PIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASD-LNRSMEQSIISGNKTIMVRQR 498
Query: 414 PGGRTGVSQLLDRTNYVSTLSHLRRV-----TSPLDREQPHFEARDLHGTHWGRICPTET 468
P +Q L+R N ++T+S LR V T+ + + R +H ++ G IC ++
Sbjct: 499 PIVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERADMMRRVHASYPGYICVAQS 558
Query: 469 PE-GPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPSPE-----LWRVYLN 522
+ G G+ K LA+ A + TA +K+ L+S + + + L RV++N
Sbjct: 559 ADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARVFIN 618
Query: 523 GVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYED-VREVYVNSDDGRVRRPLIIVEN 581
G IG + L +R + RR GKI Y++ V EV D GR+ RPL+IV+N
Sbjct: 619 GEWIGCCTNAFELAQRYRMFRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLIVDN 678
Query: 582 GKPK-------------------------------LTKEHVQAIKEGRLKWSDLVRMGVI 610
K T + + I G L DLV G+
Sbjct: 679 NIEKYNQACYKAAEARKKGDKDWEKHKIPFIQNTRFTSQMAKDILAGTLTLEDLVAQGIC 738
Query: 611 EYLDAEEEENAYVAM-------WPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRN 663
E++ EE EN VA +VT TH+++ P AILGL A + PY R
Sbjct: 739 EFITPEEAENCLVAFSIIELRKHKHDVTRRFTHVDV-PQAILGLAALVSPYANCTQPARV 797
Query: 664 TYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAV 723
TY +Q+ G ++ RVD Y ++PLV + V P G N +VA
Sbjct: 798 TYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTIAHNYV----IPNGLNTIVAY 853
Query: 724 LAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTV-RGYRG 782
+ Y GYN ED++I++++ I+RG TF+R EEK L + F P P + + +
Sbjct: 854 MIYGGYNQEDSVIVSQSFIDRGGFAGTFYR----EEKVELESDIESFGKPDPLITKNLKP 909
Query: 783 EKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSER 842
Y L DG + + V+ D++IG+ + R ++ L + + SV E
Sbjct: 910 GANYEKL-VDGFVPVGTVVKKGDIIIGKVAKIRGEKDE------LNKYIDRSVMYGFDEP 962
Query: 843 GVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGI 902
VVD V+ + + +R R IGDK +SR G KG+ L +P DMP+TE G+
Sbjct: 963 AVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTEDGL 1022
Query: 903 VPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKH 962
PDLIVNPH PSRMT GQ++E G AL+G DGTAF+ + L + L + G +
Sbjct: 1023 QPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFLPINVQLLSERLAQEGLRF 1082
Query: 963 TGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHA-RSRGPVQVLTKQPTEGRARE 1021
G + M++G TG+ F+A IF+G Y+QRL V D +A S GP LT QP +G+
Sbjct: 1083 NGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQPLDGKRSH 1142
Query: 1022 GGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVY-CPVC 1080
GGLR GEME VL GA +IE+ ++SD ++C NCG A+ + H +Y C C
Sbjct: 1143 GGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYICRNCGEPAIYN-ASHPIYKCMNC 1201
Query: 1081 GEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTERV 1117
+ I V+ + + E++A + L+ RV
Sbjct: 1202 DVQADIGMVDSRRSSIVFQHEMRAANVNITSVLSPRV 1238
>dbj|BAB14296.1| (AK022890) unnamed protein product [Homo sapiens]
Length = 714
Score = 378 bits (961), Expect = e-103
Identities = 261/746 (34%), Positives = 378/746 (49%), Gaps = 69/746 (9%)
Query: 400 LTERIEHALATGAWPGGR-------TGVSQLLDRTNYVSTLSHLRRVTSPLD-REQPHFE 451
LT+ E+ ATG +G+ + D+ N++ LSH R V D +
Sbjct: 5 LTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTT 64
Query: 452 ARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTA-VPEEEVKEYLMSLGIVPIE-- 508
R L WG +CP TP+G CGL+ +L + ++ T V + L +LG+ PI+
Sbjct: 65 VRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGA 124
Query: 509 VRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSD 568
R E + V L+GV++G ++ K L I R K+ + + +V
Sbjct: 125 PHRSYSECYPVLLDGVMVGWVD--KDLAPGIADSLRHFKVLREKRIPPWMEV-------- 174
Query: 569 DGRVRRPLIIVENGKPKLTKEHVQAIKEGRL-KWSDLVRMGVIEYLDAEEEENAYVAMWP 627
++I GKP L RL + + +G E + E+ VA++
Sbjct: 175 -------VLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFE 227
Query: 628 WEV-TEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVD 686
EV TH EL P ++L + A+ IP+ +HN +PRN Y M KQ++G ++ R D
Sbjct: 228 DEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSD 287
Query: 687 TRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGL 746
+ + L PQ PLV + ++ P G N +VAV +Y GY+MEDA+I+NKAS ERG
Sbjct: 288 NKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVTSYTGYDMEDAMIVNKASWERGF 347
Query: 747 ARSTFFRT--YEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGK 804
A + +++ + EK G + F I R + LD+DGL F +K++
Sbjct: 348 AHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPR------VLQKLDDDGLPFIGAKLQYG 401
Query: 805 DVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVD--KVIITETGDGT-KLVK 861
D P + ++L + + E VVD KV +TG G K V
Sbjct: 402 D--------PYY------SYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVC 447
Query: 862 VTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQ 921
+T+R R P IGDKFASRHGQKG++ + P EDMP+TESG+VPD++ NPHG PSRMT+G
Sbjct: 448 ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGM 507
Query: 922 LLEAIGGKVAALKGRRVDGTAFIGEPE----EKLRKELEELGFKHTGREIMYDGITGKRF 977
L+E++ GK AAL G D T FI E E + L+ G+ G E +Y GI+G
Sbjct: 508 LIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLEL 567
Query: 978 EADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGH 1037
EADIF+GV+YYQRL HMV+DK R+ G +T QP GR +GG+RFGEMERD L+ H
Sbjct: 568 EADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAH 627
Query: 1038 GAAMLLIERLLEESDKTEVWVCENCGHI----------ALEDKRRHKVYCPVCGEEERIS 1087
G + LL +RL SD++ VC CG + + R K C +C + I
Sbjct: 628 GTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTID 687
Query: 1088 KVEMSYAFKLLLDELKAMVIRPKLNL 1113
V + Y F+ + EL AM I+ KL++
Sbjct: 688 TVSVPYVFRYFVAELAAMNIKVKLDV 713
>pir||T30515 DNA-directed RNA polymerase (EC 2.7.7.6) I 135K chain - Neurospora
crassa >gi|3668171|dbj|BAA33445.1| (AB006052) RNA
polymerase I second-largest subunit [Neurospora crassa]
Length = 1234
Score = 370 bits (939), Expect = e-101
Identities = 316/1122 (28%), Positives = 518/1122 (46%), Gaps = 127/1122 (11%)
Query: 28 VRQHLDSYNA-FIDRGLQEVVD----EFG------GIKPDIPDFEVKFGKIRVGEPEFQE 76
V H++S+NA F D G ++D E G G + P + K IR E Q+
Sbjct: 43 VDPHIESFNALFRDDGKPSLLDHALAEIGTKTFLDGDERADPQGKNKL-TIRYKSIELQK 101
Query: 77 PH-------GQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKS 129
+ + ++P + R R+++Y L I E +G++PIM+KS
Sbjct: 102 SQVPPTNRWAKNREIFPAECRERHVSYRGKLSATFEYRINDGEPHEFVRELGQMPIMVKS 161
Query: 130 KVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYIA 189
C L S +L E+ ++ GGYFI+NG E++I + N L + A
Sbjct: 162 NKCHLQNNSPAQLVARKEESEELGGYFIVNGIEKLIRMLLVNRRNFPLAIVRPSFQNRGA 221
Query: 190 KVFSYRHGYRALVTVERKKDGIL-YVGIPNVPKP---------VKFVYVMRALGLERDKD 239
Y R++ E + +L Y+ NV + + +M+AL D++
Sbjct: 222 SYTPYGIIMRSVRPDETSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDRE 281
Query: 240 IVDAVGNDPEVQQILFDNLEDASDIT----------TQQEALEYIGK-----LVAPGQAR 284
I + + P+ + +L D ++ ++ + Y+G+ L P
Sbjct: 282 IFEGLVGPPQSKASPTPSLTDRVELLLRTYKKYGLYSKTQTRAYLGQKFRVVLGVPDTMS 341
Query: 285 EYRLKRAEYVIDNNLLPHIG---VSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYA 341
+Y + + +L H+G V+ + K L M K+ L G D+ D
Sbjct: 342 DYEV--GTEFLRKIVLVHLGSQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQ 399
Query: 342 NKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRN------SI 395
N+ + L G L + + +L+ + Y RR F + F+++
Sbjct: 400 NQEILLGGFLYGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQS-DTFLKDFPIAIFRR 458
Query: 396 RPDVLTERIEHALATG--AWPGGR-----TGVSQLLDRTNYVSTLSHLRRV-TSPLDREQ 447
+ + + +E+ L+TG P G +G + + ++ N++ +SH R V +
Sbjct: 459 ANENIGQSLEYFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQL 518
Query: 448 PHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITT-AVPEEEVKEYLMSLGIVP 506
R L WG +CP TP+G CGL+ +LA +I T +V + LG+V
Sbjct: 519 KTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTESVDASTISRLAFELGVVN 578
Query: 507 IEVRRPSPELWRVYLNGVIIG--TIEDGKALVERIKKDRRSGK--ISDIINVAYYEDVRE 562
I S + V L+G I+G T E+ K++ E ++ + +G+ + + + Y
Sbjct: 579 ISSAATSESVV-VMLDGRIVGWCTPEECKSIAETLRYWKVNGENGVPLQLEIGYVPPSNG 637
Query: 563 -----VYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEE 617
+Y++S R+ RP+ + L KE +++ +E
Sbjct: 638 GSYPGLYMSSQPARMVRPVKYLP-----LQKE---------------------DFVGPQE 671
Query: 618 EENAYVAMWPWEVTE-EHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGL 676
+ +A EV + TH+E P IL + A++ P+ + N +PRN Y M KQ++G
Sbjct: 672 QPYMSIACTEQEVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGT 731
Query: 677 GWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAII 736
R D + + L Q P+V + + G+++ P G N VVAV++Y GY+M+DA+I
Sbjct: 732 PATALAHRTDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMI 791
Query: 737 INKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEI------PSPTVRGYRGEKYYRHLD 790
+NK++ ERG + ++T + K ++ K + P+ T+R E LD
Sbjct: 792 LNKSAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIR----ESTRDMLD 847
Query: 791 EDGLIFPESKVEGKDVLIG--RTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKV 848
DGL + DV+ S + V+ ER + SE V++V
Sbjct: 848 NDGLPRVGRLLREGDVICAWHTVSADYNGQLVNRDGVTHYER------YKDSEDAFVEEV 901
Query: 849 IITETGDGT---KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPD 905
+ +GT + V + +R R P IGDKF+SRHGQKGV+ P DMP++E+GI PD
Sbjct: 902 RVIGADNGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSETGIQPD 961
Query: 906 LIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE----EKLRKELEELGFK 961
+I+NPH PSRMT+G +E++ GK AL G D T F + + + +L + G+
Sbjct: 962 VIINPHAFPSRMTIGMFVESLAGKAGALHGLAQDSTPFKFDEQNTAGDYFGHQLMKAGYN 1021
Query: 962 HTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRARE 1021
+ G E +Y GITG+ F+ADI++GV+YYQRL HMV DK R+ GPV T QP +GR +
Sbjct: 1022 YHGNEPLYSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKG 1081
Query: 1022 GGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCG 1063
GG+R GEMERD L+ HG + LL +RLL SD ++ W+C CG
Sbjct: 1082 GGIRVGEMERDALLAHGTSFLLQDRLLNCSDYSKSWMCRQCG 1123
>gb|AAG12856.1|AC022455_3 (AC022455) DNA-directed RNA polymerase subunit, putative; 8546-1198
[Arabidopsis thaliana]
Length = 1114
Score = 360 bits (914), Expect = 5e-98
Identities = 309/1088 (28%), Positives = 492/1088 (44%), Gaps = 142/1088 (13%)
Query: 121 GELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNR----T 176
G+ PIML SK+C L G +L + E + GGYFI+NG ERV + IAP R +
Sbjct: 72 GQFPIMLMSKLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCV--IAPKRNHPTS 129
Query: 177 LVEKD--ERQEKYIAKVFSYR--HGYRALVTVERK--KDGILYVGIPNVPKP--VKFVYV 228
++ +R+E Y +K R ++ VTV+ ++G VG V + + V
Sbjct: 130 MIRNSFRDRKEGYSSKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLV 189
Query: 229 MRALGLERDKDIVD---------------AVGND--PEVQQILFDNLEDASDITTQQEAL 271
++AL D++I + A+G E +I+ D + D + T+++
Sbjct: 190 LKALTNSCDEEIYESLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLG-LFTREQCR 248
Query: 272 EYIGKLVAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGK 331
+++G+ P AE V+ + L H+ + + + + V + SL
Sbjct: 249 KHLGQHFQPVLDGV-----AEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSL-- 301
Query: 332 RDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIH--R 389
D+ D N+ + + G ++ + + ++ + + K+ F ++ +
Sbjct: 302 --PDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVK 359
Query: 390 FIRNSIRPDVLTERIEHALATGAWPGG-------RTGVSQLLDRTNYVSTLSHLRRVTSP 442
+ N P + IE L TGA R G + +R N++ LS R V
Sbjct: 360 KLINKNPPRSIGTSIETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRG 419
Query: 443 LDREQPHFEA-RDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEE-------- 493
R L WG +CP TP+G CGL+ ++ ++IT+ +
Sbjct: 420 ASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLK 479
Query: 494 ---EVKEYLMSLGIVPIE---VRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGK 547
V + L G+VP VR P++ V L+G ++GT+ LV ++ R K
Sbjct: 480 IRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDGQVVGTLSSN--LVTKVVSYIRRLK 537
Query: 548 ISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRM 607
+ + ED+ YV + G L + ++ +K + ++ +
Sbjct: 538 VEAPSVIP--EDLEVGYVPTSMGGSYPGLYLAS-----CPARFIRPVKNISIPSDNIELI 590
Query: 608 GVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGA 667
G E + A +++ +P TH E+ P ++ + A+L P+ +HN +PRN Y
Sbjct: 591 GPFEQV-ANPINIIFISTFP------ATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQC 643
Query: 668 GMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYH 727
MAKQ++ + R D + + L PQ P+V ++ ++ P G N +VAVLA+
Sbjct: 644 QMAKQTMAYSTQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHT 703
Query: 728 GYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYR 787
G++MEDA+I+NK+S+ERG+ ++T + L Q +F+ S + R + +
Sbjct: 704 GFDMEDAMILNKSSVERGMCHGQIYQTENID----LSDQNSRFDSGSKSFRRSTNKAEHF 759
Query: 788 HLDEDGLIFPESKVEGKD----VLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERG 843
+D DGL K+ + + T+ R ++ +G V
Sbjct: 760 RIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPV------------------ 801
Query: 844 VVDKVIIT-ETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTE-SG 901
+VD V + ++ + + R R P IGDKF+SRHGQKGV + P DMP+ +G
Sbjct: 802 IVDFVSVDMKSKKHPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTG 861
Query: 902 IVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFI-------GEPEEK---- 950
+ PDLI+NPH PSRMT+ LLE+I K +L G+ VD T F GE E K
Sbjct: 862 MRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEESKSSLL 921
Query: 951 ---LRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPV 1007
L L+E GF H G E +Y G G + +IF+G +YYQRL HMV+DK RS G V
Sbjct: 922 VDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQV 981
Query: 1008 QVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAL 1067
LT QP +GR R GG+RFGEMERD L+ HGA+ LL +RL SD VC CG +
Sbjct: 982 DQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLT 1041
Query: 1068 ED-------------------KRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIR 1108
+ KV C C + + V M Y F+ L EL +M I+
Sbjct: 1042 SSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTSKGMETVAMPYVFRYLAAELASMNIK 1101
Query: 1109 PKLNLTER 1116
L L++R
Sbjct: 1102 MTLQLSDR 1109
>gb|AAG10602.1|AC008030_2 (AC008030) Similar to DNA-directed RNA polymerase subunit
[Arabidopsis thaliana]
Length = 1233
Score = 357 bits (907), Expect = 3e-97
Identities = 315/1154 (27%), Positives = 514/1154 (44%), Gaps = 155/1154 (13%)
Query: 80 QRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSD 139
+++PL P + R ++Y+ ++ + G+ PIML SK+C L G
Sbjct: 113 RKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSLKGADC 172
Query: 140 DELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNR----TLVEKD--ERQEKYIAKVFS 193
+L + E + GGYFI+NG ERV + IAP R +++ +R+E Y +K
Sbjct: 173 RKLLKCKESTSEMGGYFILNGIERVFRCV--IAPKRNHPTSMIRNSFRDRKEGYSSKAVV 230
Query: 194 YR--HGYRALVTVERK--KDGILYVGIPNVPKP--VKFVYVMRALGLERDKDIVD----- 242
R ++ VTV+ ++G VG V + + V++AL D++I +
Sbjct: 231 TRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESLNCC 290
Query: 243 ----------AVGND--PEVQQILFDNLEDASDITTQQEALEYIGKLVAP---GQAREYR 287
A+G E +I+ D + D + T+++ +++G+ P G +E
Sbjct: 291 YSEHYGRGDGAIGTQLVRERAKIILDEVRDLG-LFTREQCRKHLGQHFQPVLDGVKKESL 349
Query: 288 LKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRL 347
AE V+ + L H+ + + + + V + SL D+ D N+ + +
Sbjct: 350 SIVAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSL----PDNPDSLQNQEILV 405
Query: 348 AGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHA 407
G ++ + + ++ + + K+ F + + I ++ IE
Sbjct: 406 PGHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESRKSLL---ILFSLIGTSIETL 462
Query: 408 LATGAWPGG-------RTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFEA-RDLHGTH 459
L TGA R G + +R N++ LS R V R L
Sbjct: 463 LKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPES 522
Query: 460 WGRICPTETPEGPNCGLVKNLALMAQITTAVPEE-----------EVKEYLMSLGIVPIE 508
WG +CP TP+G CGL+ ++ ++IT+ + V + L G+VP
Sbjct: 523 WGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSL 582
Query: 509 ---VRRPSPELWRVYLNGVIIGTIEDGK-----ALVERIKKDRRSGKISDIINVAYYE-- 558
VR P++ V L+G ++GT+ + + R+K + S I + + V Y
Sbjct: 583 PKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPS-VIPEDLEVGYVPTS 641
Query: 559 ---DVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIK--EGRLKWSDLVRMGVIEYL 613
+Y+ S R RP+ + + ++++ I E +++ + +
Sbjct: 642 MGGSYPGLYLASCPARFIRPVKNIS-----IPSDNIELIGPFEQVANPINIIFISTFPGI 696
Query: 614 DAEEEENAYVAMWPWEVT------------EEHTHLELMPAAILGLPASLIPYPEHNAAP 661
+ E++ E++ TH E+ P ++ + A+L P+ +HN +P
Sbjct: 697 QSNEKKKILPNQVFMEISCPDGGNGGRNNSSLATHEEIHPTGMISVVANLTPWSDHNQSP 756
Query: 662 RNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVV 721
RN Y MAKQ++ + R D + + L PQ P+V ++ ++ P G N +V
Sbjct: 757 RNMYQCQMAKQTMAYSTQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIV 816
Query: 722 AVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYR 781
AVLA+ G++MEDA+I+NK+S+ERG+ ++T + L Q +F+ S + R
Sbjct: 817 AVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENID----LSDQNSRFDSGSKSFRRST 872
Query: 782 GEKYYRHLDEDGLIFPESKVEGKD----VLIGRTSPPRFLEERGLGAVSLQERRETSVAV 837
+ + +D DGL K+ + + T+ R ++ +G V
Sbjct: 873 NKAEHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPV------------ 920
Query: 838 RPSERGVVDKVIIT-ETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMP 896
+VD V + ++ + + R R P IGDKF+SRHGQKGV + P DMP
Sbjct: 921 ------IVDFVSVDMKSKKHPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMP 974
Query: 897 WTE-SGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFI-------GEPE 948
+ +G+ PDLI+NPH PSRMT+ LLE+I K +L G+ VD T F GE E
Sbjct: 975 FNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEE 1034
Query: 949 EK-------LRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHA 1001
K L L+E GF H G E +Y G G + +IF+G +YYQRL HMV+DK
Sbjct: 1035 SKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQV 1094
Query: 1002 RSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCEN 1061
RS G V LT QP +GR R GG+RFGEMERD L+ HGA+ LL +RL SD VC
Sbjct: 1095 RSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSL 1154
Query: 1062 CGHIALED-------------------KRRHKVYCPVCGEEERISKVEMSYAFKLLLDEL 1102
CG + + KV C C + + V M Y F+ L EL
Sbjct: 1155 CGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTSKGMETVAMPYVFRYLAAEL 1214
Query: 1103 KAMVIRPKLNLTER 1116
+M I+ L L++R
Sbjct: 1215 ASMNIKMTLQLSDR 1228
>gb|AAF75766.1|AF265351_1 (AF265351) DNA-directed RNA polymerase II polypeptide B; POLR2B [Sus
scrofa]
Length = 381
Score = 349 bits (887), Expect = 8e-95
Identities = 180/379 (47%), Positives = 246/379 (64%), Gaps = 3/379 (0%)
Query: 735 IIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPS-PTVRGYRGEKYYRHLDEDG 793
+I+N+++++RG RS F+R+Y+ +E K Q + FE P+ T +G R Y LD+DG
Sbjct: 1 VIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMR-HAIYDKLDDDG 59
Query: 794 LIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITET 853
LI P +V G DV+IG+T E+ G +R+ S +R SE G+VD+V++T
Sbjct: 60 LIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLN 119
Query: 854 GDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGI 913
+G K K+ VR +RIP+IGDKFASRHGQKG G+ QEDMP+T GI PD+I+NPH I
Sbjct: 120 QEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAI 179
Query: 914 PSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE-EKLRKELEELGFKHTGREIMYDGI 972
PSRMT+G L+E + GKV+A KG D T F +K+ L + G+ G E++Y+G
Sbjct: 180 PSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGF 239
Query: 973 TGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERD 1032
TG++ + IF+G YYQRL HMV DKIH+R+RGP+Q+L +QP EGR+R+GGLRFGEMERD
Sbjct: 240 TGRKITSQIFIGPTYYQRLKHMVDDKIHSRTRGPIQILNRQPMEGRSRDGGLRFGEMERD 299
Query: 1033 VLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMS 1092
+ HGAA L ERL E SD + VC CG +A+ + R H C C + +IS V M
Sbjct: 300 CQIAHGAAQFLRERLFEASDPYQAHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 359
Query: 1093 YAFKLLLDELKAMVIRPKL 1111
YA KLL EL +M I P++
Sbjct: 360 YACKLLFQELMSMSIAPRM 378
>gi|11435960 polymerase (RNA) II (DNA directed) polypeptide B (140kD) [Homo
sapiens]
Length = 562
Score = 334 bits (847), Expect = 4e-90
Identities = 206/551 (37%), Positives = 311/551 (56%), Gaps = 54/551 (9%)
Query: 8 EVTPD----DLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEF------------G 51
E+TPD WIV+ SY+ EKGLVRQ LDS++ FI +Q +V++
Sbjct: 16 EITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHAS 75
Query: 52 GIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGI 111
G + P + +KF +I + +P E G P+ P +AR+RNLTYSAPLY+++ +
Sbjct: 76 GEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKE 135
Query: 112 EQEPVEVR-----IGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIV 166
+E ++ + IG++PIML+S C L GL+D +L +L E P DPGGYFIINGSE+V++
Sbjct: 136 GEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLI 195
Query: 167 SIEDIAPNRTLV-EKDERQEKYIAKVFS-YRHGYRALVTV----------ERKKDGI--- 211
+ E +A N V K + + Y + S + R T+ KK I
Sbjct: 196 AQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQR 255
Query: 212 LYVGIPNVPKPVKFVYVMRALGLERDKDIVDAV---GNDPEVQQILFDNLEDASDITTQQ 268
+ +P + + V + V RALG D+DI++ + DPE+ +++ +L++A I Q
Sbjct: 256 IVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQN 315
Query: 269 EALEYIGKLVA-PGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIEL 327
AL +IG A PG +E R+K A+ V+ +LPH+GVS +KAY+LG M +++
Sbjct: 316 VALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 375
Query: 328 SLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNI 387
+LG+R+ DD+DHY NKRL LAG LL LFR F L+K+++ K + RG+ +
Sbjct: 376 ALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQK-FIDRGKDFN---- 430
Query: 388 HRFIRNSIRPDVLTERIEHALATGAWPG------GRTGVSQLLDRTNYVSTLSHLRRVTS 441
+ +I+ ++++ ++++LATG W R GVSQ+L+R + STLSHLRR+ S
Sbjct: 431 ---LELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNS 487
Query: 442 PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMS 501
P+ R+ + R LH T WG +CP ETPEG GLVKNLALMA I+ + E+L
Sbjct: 488 PIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEE 547
Query: 502 LGIVPIEVRRP 512
+ +E P
Sbjct: 548 WSMENLEEISP 558
>dbj|BAB15175.1| (AK025574) unnamed protein product [Homo sapiens]
Length = 459
Score = 309 bits (782), Expect = 2e-82
Identities = 182/435 (41%), Positives = 251/435 (56%), Gaps = 29/435 (6%)
Query: 635 THLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHY 694
TH EL P ++L + A+ IP+ + N +PRN Y M KQ++G ++ R D + + L
Sbjct: 16 THQELFPHSLLSVIANFIPFSDLNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQT 75
Query: 695 PQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRT 754
PQ PLV + ++ P G N +VAV++Y GY+MEDA+I+NKAS ERG A + +++
Sbjct: 76 PQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKS 135
Query: 755 --YEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTS 812
+ EK G + F I R + LD+DGL F +K++ D
Sbjct: 136 EFIDLSEKIKQGDSSLVFGIKPGDPR------VLQKLDDDGLPFIGAKLQYGD------- 182
Query: 813 PPRFLEERGLGAVSLQERRETSVAVRPSERGVVD--KVIITETGDGT-KLVKVTVRDLRI 869
P + ++L + + E VVD KV +TG G K V +T+R R
Sbjct: 183 -PYY------SYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRN 235
Query: 870 PEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGK 929
P IGDKFASRHGQKG++ + P EDMP+TESG+VPD++ NPHG PSRMT+G L+E++ GK
Sbjct: 236 PTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGK 295
Query: 930 VAALKGRRVDGTAFIGEPE----EKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGV 985
AAL G D T FI E E + L+ G+ G E +Y GI+G EADIF+GV
Sbjct: 296 SAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGV 355
Query: 986 IYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIE 1045
+YYQRL HMV+DK R+ G +T QP GR +GG+RFGEMERD L+ HG + LL +
Sbjct: 356 VYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHD 415
Query: 1046 RLLEESDKTEVWVCE 1060
RL SD++ VCE
Sbjct: 416 RLFNCSDRSVAHVCE 430
>emb|CAB65465.2| (Y19223) RNA polymerase, beta subunit [Thermus aquaticus]
Length = 1119
Score = 305 bits (773), Expect = 2e-81
Identities = 317/1153 (27%), Positives = 501/1153 (42%), Gaps = 232/1153 (20%)
Query: 64 FGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLY--LEMIPVIRGIEQEPVEVRIG 121
F + R+G+P F + + R ++LTY APLY L++I G+ +E EV +G
Sbjct: 68 FLEYRIGDPPFSQD----------ECREKDLTYQAPLYARLQLIHKDTGLIKED-EVFLG 116
Query: 122 ELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKD 181
LP+M + G FIING++RVIVS +P
Sbjct: 117 HLPLMTED------------------------GSFIINGADRVIVSQIHRSPGVYFTPDP 152
Query: 182 ERQEKYIAKVFSY-RHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDK-- 238
R +YIA + + G + +E + G++ + + P+ V ++R LG +++
Sbjct: 153 ARPGRYIASIIPLPKRG--PWIDLEVEASGVVTMKVNKRKFPL--VLLLRVLGYDQETLV 208
Query: 239 -------DIVDAVGND------PEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQARE 285
D+V + ++ PE + L D + +AL Y+ L+A +
Sbjct: 209 RELSAYGDLVQGLLDEAVLAMRPEEAMVRLFTLLRPGDPPKKDKALAYLFGLLA--DPKR 266
Query: 286 YRLKRA-EYVIDNNLLPHIGVSPEDRIR--------KAYYLGMMALKVIELSLGKRDEDD 336
Y L A Y + L +G+S +R + + + L + + + DD
Sbjct: 267 YDLGEAGRYKAEEKL--GVGLSGRTLVRFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDD 324
Query: 337 KDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIR 396
DH N+R+R G+L+ D FRV ++L + ++ E+ V G+
Sbjct: 325 IDHLGNRRIRTVGELMADQFRVGLARLARGVR-----------ERMVMGS---------- 363
Query: 397 PDVLTER-------IEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDR 445
PD LT +E AL R+ +SQ D TN +S+L H RR+++ L R
Sbjct: 364 PDTLTPAKLVNSRPLEAALREFF---SRSQLSQFKDETNPLSSLRHKRRISALGPGGLTR 420
Query: 446 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITT----AVPEEEVKEYLMS 501
E+ F+ RD+H TH+GRICP ETPEG N GL+ +LA A++ P VK
Sbjct: 421 ERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDALGFIRTPYRRVKN---- 476
Query: 502 LGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVR 561
G+V EV + Y +E + +R+ RR + + DV
Sbjct: 477 -GVVTEEVVYMTASEEDRYTIAQANTPLEGDRIATDRVVARRRGEPVIVAPEEVEFMDVS 535
Query: 562 EVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENA 621
V S + + P + ++ L ++Q ++ V M +E + A
Sbjct: 536 PKQVFSLNTNL-IPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAA 594
Query: 622 YVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANF 681
A EV + ++ A+ L+ +P A R+ G ++
Sbjct: 595 LYAEEDGEVVK----VDGTRIAVRYEDGRLVEHPLRRYA-RSNQGTAFDQRP-------- 641
Query: 682 RIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPA--------GQNFVVAVLAYHGYNMED 733
R+RV R+ K D PA GQN +VA++ + GYN ED
Sbjct: 642 RVRV---------------GQRVKKGDLLADGPASEEGFLALGQNVLVAIMPFDGYNFED 686
Query: 734 AIIINKASIERGLARSTFFRTYEAEEK-KYLGGQTDKFEIPSPTVRGYRGEKYYRHLDED 792
AI+I++ ++R S YE E + LG + +IP + E R LDE+
Sbjct: 687 AIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIP------HLSEAALRDLDEE 740
Query: 793 GLIFPESKVEGKDVLIGRTS-------PPRFLEERGLGAVSLQERRETSVAVRPSERGVV 845
G++ ++V+ D+L+GRTS P R + ++ ++TS+ V P E G+V
Sbjct: 741 GIVRIGAEVKPGDILVGRTSFKGEQEPSPEERLLRSIFGEKARDVKDTSLRVPPGEGGIV 800
Query: 846 DKVIITETGD-GTKL-------VKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPW 897
+ GD G +L V+V V R ++GDK A+RHG KGV+ I+P EDMP
Sbjct: 801 VGRLRLRRGDPGVELKPGVREVVRVFVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPH 860
Query: 898 TESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIG--EPE------- 948
G D+I+NP G+PSRM +GQ+LE G G+R F G EPE
Sbjct: 861 LPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPVFDGATEPEIKELLAE 920
Query: 949 ----------------EKLRKEL----EELGFKHTGRE--------------IMYDGITG 974
+K KE+ E+LG G+ ++YDG TG
Sbjct: 921 AFNLYFGKRQGEGFGVDKREKEVLARAEKLGLVSPGKSPEEQLKELFDLGKVVLYDGRTG 980
Query: 975 KRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVL 1034
+ FE I VG ++ +L+HMV DK+HARS GP ++T+QP G+A+ GG RFGEME L
Sbjct: 981 EPFEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWAL 1040
Query: 1035 VGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYA 1094
+GAA L E L +SD E R+ Y + E+ + + + +
Sbjct: 1041 EAYGAAHTLQEMLTIKSDDIE---------------GRNAAYQAIIKGED-VPEPSVPES 1084
Query: 1095 FKLLLDELKAMVI 1107
F++L+ EL+A+ +
Sbjct: 1085 FRVLVKELQALAL 1097
>pdb|1DDQ|C Chain C, Crystal Structure Of Thermus Aquaticus Core Rna Polymerase
At 3.3 A Resolution
Length = 1119
Score = 305 bits (773), Expect = 2e-81
Identities = 317/1158 (27%), Positives = 505/1158 (43%), Gaps = 234/1158 (20%)
Query: 64 FGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLY--LEMIPVIRGIEQEPVEVRIG 121
F + R+G+P F + + R ++LTY APLY L++I G+ +E EV +G
Sbjct: 68 FLEYRIGDPPFSQD----------ECREKDLTYQAPLYARLQLIHKDTGLIKED-EVFLG 116
Query: 122 ELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKD 181
LP+M + G FIING++RVIVS +P
Sbjct: 117 HLPLMTED------------------------GSFIINGADRVIVSQIHRSPGVYFTPDP 152
Query: 182 ERQEKYIAKVFSY-RHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDK-- 238
R +YIA + + G + +E + G++ + + P+ V ++R LG +++
Sbjct: 153 ARPGRYIASIIPLPKRG--PWIDLEVEASGVVTMKVNKRKFPL--VLLLRVLGYDQETLV 208
Query: 239 -------DIVDAVGND------PEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQARE 285
D+V + ++ PE + L D + +AL Y+ L+A +
Sbjct: 209 RELSAYGDLVQGLLDEAVLAMRPEEAMVRLFTLLRPGDPPKKDKALAYLFGLLA--DPKR 266
Query: 286 YRLKRA-EYVIDNNLLPHIGVSPEDRIR--------KAYYLGMMALKVIELSLGKRDEDD 336
Y L A Y + L +G+S +R + + + L + + + DD
Sbjct: 267 YDLGEAGRYKAEEKL--GVGLSGRTLVRFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDD 324
Query: 337 KDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIR 396
DH N+R+R G+L+ D FRV ++L + ++ E+ V G+
Sbjct: 325 IDHLGNRRIRTVGELMADQFRVGLARLARGVR-----------ERMVMGS---------- 363
Query: 397 PDVLTER-------IEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDR 445
PD LT +E AL R+ +SQ D TN +S+L H RR+++ L R
Sbjct: 364 PDTLTPAKLVNSRPLEAALREFF---SRSQLSQFKDETNPLSSLRHKRRISALGPGGLTR 420
Query: 446 EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITT----AVPEEEVKEYLMS 501
E+ F+ RD+H TH+GRICP ETPEG N GL+ +LA A++ P VK
Sbjct: 421 ERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDALGFIRTPYRRVKN---- 476
Query: 502 LGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVR 561
G+V EV + Y +E + +R+ RR + + DV
Sbjct: 477 -GVVTEEVVYMTASEEDRYTIAQANTPLEGDRIATDRVVARRRGEPVIVAPEEVEFMDVS 535
Query: 562 EVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLK-WSDLVRMGVIEYLDAEEEEN 620
V S + + P + ++ L ++Q ++ + +V +G+ E + +
Sbjct: 536 PKQVFSLNTNL-IPFLEHDDANRALMGSNMQTQAVPLIRAQAPVVMIGLEERVVRDSLAA 594
Query: 621 AYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWAN 680
Y E E ++ A+ L+ +P A R+ G ++
Sbjct: 595 LYA-----EEDGEVVKVDGTRIAVRYEDGRLVEHPLRRYA-RSNQGTAFDQRP------- 641
Query: 681 FRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPA--------GQNFVVAVLAYHGYNME 732
R+RV R+ K D PA GQN +VA++ + GYN E
Sbjct: 642 -RVRV---------------GQRVKKGDLLADGPASEEGFLALGQNVLVAIMPFDGYNFE 685
Query: 733 DAIIINKASIERGLARSTFFRTYEAEEK-KYLGGQTDKFEIPSPTVRGYRGEKYYRHLDE 791
DAI+I++ ++R S YE E + LG + +IP + E R LDE
Sbjct: 686 DAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIP------HLSEAALRDLDE 739
Query: 792 DGLIFPESKVEGKDVLIGRTS-------PPRFLEERGLGAVSLQERRETSVAVRPSERGV 844
+G++ ++V+ D+L+GRTS P R + ++ ++TS+ V P E G+
Sbjct: 740 EGIVRIGAEVKPGDILVGRTSFKGEQEPSPEERLLRSIFGEKARDVKDTSLRVPPGEGGI 799
Query: 845 VDKVIITETGD-GTKL-------VKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMP 896
V + GD G +L V+V V R ++GDK A+RHG KGV+ I+P EDMP
Sbjct: 800 VVGRLRLRRGDPGVELKPGVREVVRVFVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMP 859
Query: 897 WTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIG--EPE------ 948
G D+I+NP G+PSRM +GQ+LE G G+R F G EPE
Sbjct: 860 HLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPVFDGATEPEIKELLA 919
Query: 949 -----------------EKLRKEL----EELGFKHTGRE--------------IMYDGIT 973
+K KE+ E+LG G+ ++YDG T
Sbjct: 920 EAFNLYFGKRQGEGFGVDKREKEVLARAEKLGLVSPGKSPEEQLKELFDLGKVVLYDGRT 979
Query: 974 GKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDV 1033
G+ FE I VG ++ +L+HMV DK+HARS GP ++T+QP G+A+ GG RFGEME
Sbjct: 980 GEPFEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWA 1039
Query: 1034 LVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSY 1093
L +GAA L E L +SD E R+ Y + E+ + + +
Sbjct: 1040 LEAYGAAHTLQEMLTIKSDDIE---------------GRNAAYQAIIKGED-VPEPSVPE 1083
Query: 1094 AFKLLLDELKAMVIRPKL 1111
+F++L+ EL+A+ + +L
Sbjct: 1084 SFRVLVKELQALALDVQL 1101
>gi|8922399 hypothetical protein FLJ10388 [Homo sapiens]
>gi|7022389|dbj|BAA91581.1| (AK001250) unnamed protein
product [Homo sapiens]
Length = 343
Score = 301 bits (763), Expect = 3e-80
Identities = 155/333 (46%), Positives = 217/333 (64%), Gaps = 9/333 (2%)
Query: 786 YRH--LDEDGLIFPESKVEGKDVLIGRTSPP-RFLEERGLGAVSLQERRETSVAVRPSER 842
+RH LD DG+ P KVE K VL+ ++ P + G + ++ + + +
Sbjct: 14 WRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATD 73
Query: 843 GVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGI 902
++KV+I+ + L+K+ +R R PEIGDKF+SRHGQKGV GLIVPQEDMP+ +SGI
Sbjct: 74 SYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGI 133
Query: 903 VPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKH 962
PD+I+NPHG PSRMTVG+L+E + GK L GR GTAF G + + ++L G+ +
Sbjct: 134 CPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNY 193
Query: 963 TGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREG 1022
G++ + GITG+ EA I+ G +YYQ+L HMV DK+HAR+RGP VLT+QPTEGR+R+G
Sbjct: 194 LGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDG 253
Query: 1023 GLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGE 1082
GLR GEMERD L+G+GA+MLL+ERL+ SD EV VC CG + + +C C
Sbjct: 254 GLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLG------YSGWCHYCKS 307
Query: 1083 EERISKVEMSYAFKLLLDELKAMVIRPKLNLTE 1115
+S + + YA KLL EL++M I P+L L++
Sbjct: 308 SCHVSSLRIPYACKLLFQELQSMNIIPRLKLSK 340
>dbj|BAA91527.1| (AK001161) unnamed protein product [Homo sapiens]
Length = 343
Score = 300 bits (759), Expect = 8e-80
Identities = 155/333 (46%), Positives = 217/333 (64%), Gaps = 9/333 (2%)
Query: 786 YRH--LDEDGLIFPESKVEGKDVLIGRTSPP-RFLEERGLGAVSLQERRETSVAVRPSER 842
+RH LD DG+ P KVE K VL+ ++ P + G + ++ + + +
Sbjct: 14 WRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATD 73
Query: 843 GVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGI 902
++KV+I+ + L+K+ +R R PEIGDKF+SRHGQKGV GLIVPQEDMP+ +SGI
Sbjct: 74 SYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGI 133
Query: 903 VPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKH 962
PD+I+NPHG PSRMTVG+L+E + GK L GR GTAF G + + ++L G+ +
Sbjct: 134 CPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVCHGYNY 193
Query: 963 TGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREG 1022
G++ + GITG+ EA I+ G +YYQ+L HMV DK+HAR+RGP VLT+QPTEGR+R+G
Sbjct: 194 LGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDG 253
Query: 1023 GLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGE 1082
GLR GEMERD L+G+GA+MLL+ERL+ SD EV VC CG + + +C C
Sbjct: 254 GLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLG------YSGWCHYCKS 307
Query: 1083 EERISKVEMSYAFKLLLDELKAMVIRPKLNLTE 1115
+S + + YA KLL EL++M I P+L L++
Sbjct: 308 SCHVSSLRIPYACKLLFQELQSMNIIPRLKLSK 340
>emb|CAB43061.1| (AJ133214) RNA polymerase II [Buddleja asiatica]
Length = 260
Score = 294 bits (746), Expect = 3e-78
Identities = 138/251 (54%), Positives = 182/251 (71%)
Query: 823 GAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQ 882
G + +R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQ
Sbjct: 9 GQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 68
Query: 883 KGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTA 942
KG +G+ QEDMPWT+ GI PD+IVNPH IPSRMT+GQL+E + GKVAA G+ D T
Sbjct: 69 KGTVGMTYTQEDMPWTQEGICPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATP 128
Query: 943 FIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHAR 1002
F + + K L + G++ G E MY+G TG+R A IF+G YYQRL HMV DKIH+R
Sbjct: 129 FTDVTVDNISKALHKCGYQMRGYETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSR 188
Query: 1003 SRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENC 1062
RGPVQ+LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD + VCE C
Sbjct: 189 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERC 248
Query: 1063 GHIALEDKRRH 1073
G IA+ + +++
Sbjct: 249 GLIAIANLKKN 259
>emb|CAB43082.1| (AJ133215) RNA polymerase II [Retzia capensis]
Length = 256
Score = 290 bits (735), Expect = 5e-77
Identities = 137/245 (55%), Positives = 176/245 (70%)
Query: 823 GAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQ 882
G + +R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+ GDKF+SRHGQ
Sbjct: 11 GQAARYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQXGDKFSSRHGQ 70
Query: 883 KGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTA 942
KG +G+ QEDMPWT GI PD+IVNPH IPSRMT+GQL+E + GKVAA G+ D T
Sbjct: 71 KGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATP 130
Query: 943 FIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHAR 1002
F + + K L + G++ G E MY+G TG+R A IF+G YYQRL HMV DKIH+R
Sbjct: 131 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR 190
Query: 1003 SRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENC 1062
RGPVQ+LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD + VCE C
Sbjct: 191 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERC 250
Query: 1063 GHIAL 1067
G IA+
Sbjct: 251 GLIAI 255
>emb|CAB43079.1| (AJ133217) RNA polymerase II [Peltanthera floribunda]
Length = 260
Score = 290 bits (734), Expect = 7e-77
Identities = 138/245 (56%), Positives = 176/245 (71%)
Query: 823 GAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQ 882
G + +R+ S ++R SE G VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQ
Sbjct: 11 GQAARYTKRDHSTSLRHSETGTVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 70
Query: 883 KGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTA 942
KG +G+ QEDMPWT GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T
Sbjct: 71 KGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 130
Query: 943 FIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHAR 1002
F + + K L + G++ G E MY+G TG+R + IF+G YYQRL HMV DKIH+R
Sbjct: 131 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSR 190
Query: 1003 SRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENC 1062
RGPVQ+LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD + VCE C
Sbjct: 191 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEQC 250
Query: 1063 GHIAL 1067
G IA+
Sbjct: 251 GLIAI 255
>emb|CAB43088.1| (AJ133233) RNA polymerase II [Usteria guineensis]
Length = 268
Score = 288 bits (730), Expect = 2e-76
Identities = 136/248 (54%), Positives = 179/248 (71%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 19 KRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 78
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 79 YTQEDMPFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 138
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ + L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 139 NISRALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 198
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD + VCE CG IA+ +
Sbjct: 199 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIAN 258
Query: 1070 KRRHKVYC 1077
+++ C
Sbjct: 259 LKKNSFEC 266
>gb|AAC64011.1| (AF064610) RNA polymerase II subunit 2 [Mostuea brunonis]
Length = 261
Score = 288 bits (729), Expect = 3e-76
Identities = 136/248 (54%), Positives = 179/248 (71%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 14 KRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 73
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 74 YTQEDMPFTGEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 133
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 134 NISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 193
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
LT+QP EGR+R+GGLRFGEMERD ++ HGA+ L ERL ++SD + VCE CG IA+ +
Sbjct: 194 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRIHVCERCGLIAIAN 253
Query: 1070 KRRHKVYC 1077
+++ C
Sbjct: 254 LKKNSFEC 261
>gb|AAC64012.1| (AF064611) RNA polymerase II subunit 2 [Periploca graeca]
Length = 260
Score = 287 bits (727), Expect = 4e-76
Identities = 136/238 (57%), Positives = 174/238 (72%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 20 KRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 79
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T+ GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 80 YTQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 139
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 140 NISKALHRCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 199
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAL 1067
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD + VCE CG IA+
Sbjct: 200 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAI 257
>emb|CAB43085.1| (AJ133219) RNA polymerase II [Stephanotis floribunda]
Length = 261
Score = 287 bits (726), Expect = 6e-76
Identities = 137/238 (57%), Positives = 174/238 (72%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 20 KRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 79
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 80 YTQEDMPFTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 139
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 140 NISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 199
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAL 1067
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD V VCE CG IA+
Sbjct: 200 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAI 257
>emb|CAB43073.1| (AJ133236) RNA polymerase II [Mussaenda erythrophylla]
Length = 261
Score = 287 bits (726), Expect = 6e-76
Identities = 137/238 (57%), Positives = 174/238 (72%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 20 KRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 79
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 80 YTQEDMPFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 139
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 140 NISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 199
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAL 1067
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD V VCE CG IA+
Sbjct: 200 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGXIAI 257
>emb|CAB43080.1| (AJ133239) RNA polymerase II [Pinckneya pubescens]
Length = 263
Score = 287 bits (726), Expect = 6e-76
Identities = 137/243 (56%), Positives = 177/243 (72%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 21 KRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 80
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 81 YTQEDMPFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 140
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 141 NISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 200
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD V VCE CG IA+ +
Sbjct: 201 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIAN 260
Query: 1070 KRR 1072
++
Sbjct: 261 LKK 263
>emb|CAB43064.1| (AJ133234) RNA polymerase II [Chiococca racemosa]
Length = 267
Score = 286 bits (725), Expect = 7e-76
Identities = 138/248 (55%), Positives = 178/248 (71%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 20 KRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 79
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 80 YTQEDMPFTVEGINPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 139
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 140 NISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 199
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD V VCE CG IA+ +
Sbjct: 200 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIAN 259
Query: 1070 KRRHKVYC 1077
++ C
Sbjct: 260 LKKXXXEC 267
>emb|CAB43083.1| (AJ133240) RNA polymerase II [Rondeletia odorata]
Length = 261
Score = 286 bits (725), Expect = 7e-76
Identities = 136/243 (55%), Positives = 178/243 (72%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 19 KRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 78
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 79 YTQEDMPFTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 138
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 139 NISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 198
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD + VCE+CG IA+ +
Sbjct: 199 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEHCGLIAIAN 258
Query: 1070 KRR 1072
++
Sbjct: 259 LKK 261
>emb|CAB43059.1| (AJ133225) RNA polymerase II [Antonia ovata]
Length = 262
Score = 286 bits (724), Expect = 1e-75
Identities = 136/247 (55%), Positives = 177/247 (71%)
Query: 826 SLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGV 885
S +R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG
Sbjct: 16 SXYTKRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 75
Query: 886 IGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIG 945
+G+ QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F
Sbjct: 76 VGMTYTQEDMPFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEXDATPFXD 135
Query: 946 EPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRG 1005
+ + + L G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RG
Sbjct: 136 VTVDNISRALHXCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRG 195
Query: 1006 PVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHI 1065
PVQ+LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD + VCE CG I
Sbjct: 196 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLI 255
Query: 1066 ALEDKRR 1072
A+ + ++
Sbjct: 256 AIANLKK 262
>emb|CAB43072.1| (AJ133227) RNA polymerase II [Logania vaginalis]
Length = 262
Score = 286 bits (723), Expect = 1e-75
Identities = 135/243 (55%), Positives = 177/243 (72%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 20 KRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 79
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 80 YTQEDMPFTGEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 139
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ + L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 140 NISRALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 199
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD + VCE CG IA+ +
Sbjct: 200 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIAN 259
Query: 1070 KRR 1072
++
Sbjct: 260 LKK 262
>emb|CAB43074.1| (AJ133229) RNA polymerase II [Mitreola petiolata]
Length = 261
Score = 286 bits (723), Expect = 1e-75
Identities = 135/243 (55%), Positives = 177/243 (72%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 19 KRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 78
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 79 YTQEDMPFTGEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 138
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ + L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 139 NISRALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 198
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD + VCE CG IA+ +
Sbjct: 199 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIAN 258
Query: 1070 KRR 1072
++
Sbjct: 259 LKK 261
>gb|AAC64010.1| (AF064609) RNA polymerase II subunit 2 [Kopsia fruticosa]
Length = 269
Score = 285 bits (722), Expect = 2e-75
Identities = 136/248 (54%), Positives = 177/248 (70%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+S+HGQKG IG+
Sbjct: 20 KRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSKHGQKGTIGMT 79
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP T GI PD+ VNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 80 YTQEDMPSTAEGITPDISVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 139
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 140 NISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 199
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD + VCE CG IA+ +
Sbjct: 200 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIAN 259
Query: 1070 KRRHKVYC 1077
+++ C
Sbjct: 260 LKKNSFEC 267
>emb|CAB43068.1| (AJ133235) RNA polymerase II [Gardenia thunbergia]
Length = 269
Score = 285 bits (722), Expect = 2e-75
Identities = 135/244 (55%), Positives = 178/244 (72%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +R+P+IGDKF+SRHGQKG +G+
Sbjct: 21 KRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRVPQIGDKFSSRHGQKGTVGMT 80
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 81 YTQEDMPFTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 140
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 141 NISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 200
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD V +CE CG IA+ +
Sbjct: 201 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHLCERCGLIAIAN 260
Query: 1070 KRRH 1073
+++
Sbjct: 261 LKKN 264
>emb|CAB43084.1| (AJ133232) RNA polymerase II [Spigelia anthelmia]
Length = 260
Score = 285 bits (722), Expect = 2e-75
Identities = 134/243 (55%), Positives = 176/243 (72%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
RR+ S ++R +E G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 18 RRDHSTSLRHNENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 77
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T G+ PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 78 YTQEDMPFTXEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 137
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 138 NISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 197
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD + VCE CG I + +
Sbjct: 198 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIXIAN 257
Query: 1070 KRR 1072
++
Sbjct: 258 LKK 260
>gb|AAC64013.1| (AF064612) RNA polymerase II subunit 2 [Chironia linoides]
Length = 256
Score = 285 bits (721), Expect = 2e-75
Identities = 135/250 (54%), Positives = 178/250 (71%)
Query: 840 SERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTE 899
SE G+VD+V++T DG + VKV VR +R+P+IGDKF+SRHGQKG +G+ QEDMP+T
Sbjct: 4 SETGMVDQVLLTTNADGLRFVKVRVRSVRVPQIGDKFSSRHGQKGTVGMTYTQEDMPFTS 63
Query: 900 SGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELG 959
GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F + + + L + G
Sbjct: 64 EGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRALPKCG 123
Query: 960 FKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRA 1019
++ G E M++G TG+ F A IF+G YYQRL HMV DKIH+R RGPVQ+LT+QP EGR+
Sbjct: 124 YQMRGFERMFNGHTGRPFTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRS 183
Query: 1020 REGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPV 1079
R+GGLRFGEMERD ++ HGAA L ERL ++SD + VCE CG IA+ + +++ C
Sbjct: 184 RDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRS 243
Query: 1080 CGEEERISKV 1089
C + I +V
Sbjct: 244 CKNKTDIVQV 253
>emb|CAB43087.1| (AJ133216) RNA polymerase II [Sanango racemosum]
Length = 259
Score = 285 bits (721), Expect = 2e-75
Identities = 135/245 (55%), Positives = 175/245 (71%)
Query: 823 GAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQ 882
G + +R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGD F+SRHGQ
Sbjct: 9 GQAARYXKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDXFSSRHGQ 68
Query: 883 KGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTA 942
KG +G+ QEDMPWT GI PD+IVNP IPSRMT+GQL+E I GKVAA G+ D T
Sbjct: 69 KGTVGMTYTQEDMPWTVEGISPDIIVNPXAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 128
Query: 943 FIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHAR 1002
F + + K L + G++ G E MY+G TG+R + IF+G YYQRL HMV DKIH+R
Sbjct: 129 FTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSR 188
Query: 1003 SRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENC 1062
RGPVQ+LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD + +CE C
Sbjct: 189 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHICERC 248
Query: 1063 GHIAL 1067
G IA+
Sbjct: 249 GLIAI 253
>emb|CAB43086.1| (AJ133231) RNA polymerase II [Strychnos potatorum]
Length = 263
Score = 285 bits (721), Expect = 2e-75
Identities = 134/244 (54%), Positives = 178/244 (72%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 20 KRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 79
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 80 YTQEDMPFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 139
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ + L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 140 NISRALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 199
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
LT+QP EGR+R+GGLRFGEMERD ++ HGA+ L ERL ++SD + VCE CG IA+ +
Sbjct: 200 LTRQPAEGRSRDGGLRFGEMERDCMIAHGASHFLKERLFDQSDAYRIHVCERCGLIAIAN 259
Query: 1070 KRRH 1073
+++
Sbjct: 260 LKKN 263
>emb|CAB43077.1| (AJ133237) RNA polymerase II [Oldenlandia corymbosa]
Length = 262
Score = 284 bits (720), Expect = 3e-75
Identities = 136/243 (55%), Positives = 176/243 (71%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 20 KRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSIRIPQIGDKFSSRHGQKGTVGMT 79
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 80 YTQEDMPFTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 139
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 140 NISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 199
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++S V VCE CG IA+ +
Sbjct: 200 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSXAYRVHVCERCGLIAIAN 259
Query: 1070 KRR 1072
++
Sbjct: 260 LKK 262
>emb|CAB43066.1| (AJ133226) RNA polymerase II [Gardneria angustifolia]
Length = 261
Score = 284 bits (718), Expect = 5e-75
Identities = 134/243 (55%), Positives = 177/243 (72%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +R+P+IGDKF+SRHGQKG +G+
Sbjct: 19 KRDHSTSLRHSENGMVDQVLLTTNADGLRFVKVRVRSVRVPQIGDKFSSRHGQKGTVGMT 78
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 79 YTQEDMPFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 138
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ + L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 139 NISRALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 198
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD + VCE+CG IA +
Sbjct: 199 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEHCGLIAXAN 258
Query: 1070 KRR 1072
++
Sbjct: 259 LKK 261
>gi|11436210 hypothetical protein FLJ10388 [Homo sapiens]
Length = 302
Score = 283 bits (717), Expect = 6e-75
Identities = 140/285 (49%), Positives = 195/285 (68%), Gaps = 6/285 (2%)
Query: 831 RETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIV 890
++ + + + ++KV+I+ + L+K+ +R R PEIGDKF+SRHGQKGV GLIV
Sbjct: 21 KDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIV 80
Query: 891 PQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEK 950
PQEDMP+ +SGI PD+I+NPHG PSRMTVG+L+E + GK L GR GTAF G +
Sbjct: 81 PQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKD 140
Query: 951 LRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVL 1010
+ ++L G+ + G++ + GITG+ EA I+ G +YYQ+L HMV DK+HAR+RGP VL
Sbjct: 141 VCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVL 200
Query: 1011 TKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDK 1070
T+QPTEGR+R+GGLR GEMERD L+G+GA+MLL+ERL+ SD EV VC CG +
Sbjct: 201 TRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLG---- 256
Query: 1071 RRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTE 1115
+ +C C +S + + YA KLL EL++M I P+L L++
Sbjct: 257 --YSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSK 299
>emb|CAB43060.1| (AJ133218) RNA polymerase II [Alstonia scholaris]
Length = 258
Score = 283 bits (717), Expect = 6e-75
Identities = 135/238 (56%), Positives = 172/238 (71%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG IG+
Sbjct: 18 KRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTIGMT 77
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 78 YTQEDMPFTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 137
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 138 NISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 197
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAL 1067
LT+QP EGR+R+GG RFGEMERD ++ HGAA L ERL ++SD + VCE CG I +
Sbjct: 198 LTRQPAEGRSRDGGFRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEXCGLIXI 255
>gb|AAC64014.1| (AF064613) RNA polymerase II subunit 2 [Kopsia fruticosa]
Length = 259
Score = 283 bits (716), Expect = 8e-75
Identities = 135/243 (55%), Positives = 175/243 (71%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
RR+ S ++R SE G+VD+V++T DG + VKV +R +R+P+IGDKF+SRHGQKG IG+
Sbjct: 17 RRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRMRSVRLPQIGDKFSSRHGQKGTIGMT 76
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMPWT G+ PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 77 YTQEDMPWTLEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 136
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L + G++ G E MY+G TG+ IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 137 NISKALHKCGYQMRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 196
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD V VC+ CG IA+
Sbjct: 197 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQICGLIAIAS 256
Query: 1070 KRR 1072
++
Sbjct: 257 LKK 259
>emb|CAB43078.1| (AJ133238) RNA polymerase II [Ophiorrhiza mungos]
Length = 263
Score = 283 bits (716), Expect = 8e-75
Identities = 136/238 (57%), Positives = 173/238 (72%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 21 KRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 80
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 81 YTQEDMPFTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 140
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+ RGPVQ+
Sbjct: 141 NISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSXGRGPVQI 200
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAL 1067
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD V VCE CG IA+
Sbjct: 201 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAI 258
>emb|CAB43058.1| (AJ133222) RNA polymerase II [Anthocleista grandiflora]
Length = 256
Score = 281 bits (712), Expect = 2e-74
Identities = 133/238 (55%), Positives = 170/238 (70%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S +R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 16 KRDHSTXLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 75
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 76 YTQEDMPFTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 135
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 136 NISKALHRCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 195
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAL 1067
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++ D + +C CG IA+
Sbjct: 196 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQXDAYRIHICXRCGLIAI 253
>gb|AAA21416.1| (L27989) RNA polymerase beta-subunit [Mycobacterium tuberculosis]
Length = 1177
Score = 280 bits (709), Expect = 6e-74
Identities = 318/1258 (25%), Positives = 525/1258 (41%), Gaps = 330/1258 (26%)
Query: 4 PTVVEVTPDDL-WIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEV 62
P +++V D W++ W+E R ++ GL+EV+ E I+ +
Sbjct: 51 PGLLDVQTDSFEWLIGSPRWRESAAERGDVNPVG-----GLEEVLYELSPIEDFSGSMSL 105
Query: 63 KFGKIRVGEPEFQEPHGQRKPLYPMD-ARIRNLTYSAPLYL--EMIPVIRGIEQEPVEVR 119
F +P F + P+D + +++TY+APL++ E I G E + V
Sbjct: 106 SFS-----DPRFDDVKA------PVDECKDKDMTYAAPLFVTAEFINNNTG-EIKSQTVF 153
Query: 120 IGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPN---RT 176
+G+ P+M + G FIING+ERV+VS +P
Sbjct: 154 MGDFPMMTEK------------------------GTFIINGTERVVVSQLVRSPGVYFDE 189
Query: 177 LVEKDERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLER 236
++K + + KV R + +R G+ P V +++ALG
Sbjct: 190 TIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTV----LLKALGWTS 245
Query: 237 DKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQA------------- 283
++ IV+ G +I+ LE + + T + L+ KL PG+
Sbjct: 246 EQ-IVERFG----FSEIMRSTLEKDNTVGTDEALLDIYRKL-RPGEPPTKESAQTLLENL 299
Query: 284 ----REYRLKRA-EYVIDNNLLPHIG-------VSPEDRIRKAYYL-----GMMALKV-- 324
+ Y L R Y ++ L H+G ++ ED + YL G + V
Sbjct: 300 FFKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPG 359
Query: 325 -IELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
+E+ + + DD DH+ N+RLR G+L+++ RV S++ + ++ +MT
Sbjct: 360 GVEVPV---ETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVE------ 410
Query: 384 FGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS-- 441
+I P L I +A G + +SQ +D+ N +S L+H RR+++
Sbjct: 411 ----------AITPQTLIN-IRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALG 459
Query: 442 --PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYL 499
L RE+ E RD+H +H+GR+CP ETPEGPN GL+ +L++ A++
Sbjct: 460 PGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNP----------- 508
Query: 500 MSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYED 559
G + R+ V+ G + D +I+ + E+
Sbjct: 509 --FGFIETPYRK------------VVDGVVSD------------------EIVYLTADEE 536
Query: 560 VREVYVNSD-----DGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLD 614
R V ++ DGR P ++V + G +EY+
Sbjct: 537 DRHVVAQANSPIDADGRFVEPRVLVRR------------------------KAGEVEYVP 572
Query: 615 AEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQS- 673
+ E + ++++ P ++ + ++IP+ EH+ A R GA M +Q+
Sbjct: 573 SSEVD----------------YMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 616
Query: 674 ---------LGLGWA------------------------------------NFRIRVDTR 688
+G G +R+R R
Sbjct: 617 PLVRSEAPLVGTGMELRAAIDAATSSSQESGVIEEVSADYITVMHDNGTRRTYRMRKFAR 676
Query: 689 G-HLLHYPQIPLVNS--RIMKAVGYEDRPA--------GQNFVVAVLAYHGYNMEDAIII 737
H Q P+V++ R+ D P G+N +VA++ + G+N EDAII+
Sbjct: 677 SNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIIL 736
Query: 738 NKASIERGLARSTFFRTYEAEEKKY-LGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIF 796
+ +E + S +E + + LG + +IP+ + ++ LDE G++
Sbjct: 737 SNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNIS------DEVLADLDERGIVR 790
Query: 797 PESKVEGKDVLIGRTSPPRFLE----ERGLGAV---SLQERRETSVAVRPSERGVVDKVI 849
++V D+L+G+ +P E ER L A+ +E R+TS+ V E G V +
Sbjct: 791 IGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIR 850
Query: 850 ITETGDG-------TKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGI 902
+ D +LV+V V R GDK A RHG KGVIG I+P EDMP+ G
Sbjct: 851 VFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGT 910
Query: 903 VPDLIVNPHGIPSRMTVGQLLEA-------IGGKVAALKG------------------RR 937
D+I+N HG+P RM +GQ+LE G KV A KG
Sbjct: 911 PVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAHANAI 970
Query: 938 VDGTAFIGEPEEKLRKELE--------ELGFKHTGREIMYDGITGKRFEADIFVGVIYYQ 989
V F G E +L+ L ++ G+ +++DG +G+ F + VG +Y
Sbjct: 971 VSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIM 1030
Query: 990 RLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLE 1049
+LHH+V DKIHARS GP ++T+QP G+A+ GG RFGEME + +GAA L E L
Sbjct: 1031 KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI 1090
Query: 1050 ESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVI 1107
+SD T R KVY + + E I + + +FK+LL EL+++ +
Sbjct: 1091 KSDDT---------------VGRVKVYEAIV-KGENIPEPGIPESFKVLLKELQSLCL 1132
>emb|CAB43089.1| (AJ133220) RNA polymerase II [Wrightia arborea]
Length = 249
Score = 279 bits (706), Expect = 1e-73
Identities = 134/242 (55%), Positives = 173/242 (71%)
Query: 831 RETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIV 890
R S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 8 RNHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 67
Query: 891 PQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEK 950
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 68 TQEDMPFTAEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 127
Query: 951 LRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVL 1010
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+L
Sbjct: 128 ISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 187
Query: 1011 TKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDK 1070
T+QP EGR+R+GGLRFGEMERD ++ HGAA L RL ++SD + VCE G IA+ +
Sbjct: 188 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKXRLFDQSDAYRIHVCERXGLIAIANL 247
Query: 1071 RR 1072
++
Sbjct: 248 KK 249
>emb|CAB43065.1| (AJ133223) RNA polymerase II [Fagraea sp.]
Length = 257
Score = 278 bits (704), Expect = 2e-73
Identities = 133/238 (55%), Positives = 171/238 (70%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 18 KRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 77
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 78 YTQEDMPFTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 137
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 138 NISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 197
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAL 1067
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++ D + VCE G I +
Sbjct: 198 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQXDAYRIHVCERXGLIXI 255
>emb|CAB43067.1| (AJ133221) RNA polymerase II [Gelsemium sempervirens]
Length = 236
Score = 277 bits (702), Expect = 4e-73
Identities = 132/233 (56%), Positives = 167/233 (71%)
Query: 831 RETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIV 890
R+ S +R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 4 RDHSXXLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 63
Query: 891 PQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEK 950
QEDMP+T GI PD+ VNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 64 TQEDMPFTVEGITPDIXVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 123
Query: 951 LRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVL 1010
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+L
Sbjct: 124 ISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQIL 183
Query: 1011 TKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCG 1063
T+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD + CE CG
Sbjct: 184 TRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDXYRIHXCERCG 236
>emb|CAB43076.1| (AJ133230) RNA polymerase II [Neuburgia corynocarpum]
Length = 258
Score = 277 bits (701), Expect = 5e-73
Identities = 133/248 (53%), Positives = 176/248 (70%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE GVVD+V++T DG +LVKV VR +RIP+IGD+F+SRHGQKG +G+
Sbjct: 10 KRDHSTSLRHSENGVVDQVLLTTNADGLRLVKVRVRSVRIPQIGDRFSSRHGQKGTVGMT 69
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I KVAA G+ D T F E
Sbjct: 70 YTQEDMPFTIEGITPDVIVNPHAIPSRMTIGQLIECIMHKVAAQMGKEGDATPFTDVTVE 129
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ + L + ++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 130 NISRALHKCSYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 189
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
LT+QP EGR+R+ GL+FGE ERD ++ HGAA L ERL + SD + VCE+CG IA+ +
Sbjct: 190 LTRQPAEGRSRDDGLQFGERERDCMIAHGAAHFLKERLFDXSDAYRIHVCEHCGLIAIAN 249
Query: 1070 KRRHKVYC 1077
+++ C
Sbjct: 250 LKKNSFEC 257
>gb|AAC64015.1| (AF064614) RNA polymerase II subunit 2 [Mostuea brunonis]
Length = 255
Score = 276 bits (699), Expect = 8e-73
Identities = 135/245 (55%), Positives = 172/245 (70%)
Query: 823 GAVSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQ 882
G S RR+ S ++R SE GVVD+V++T DG K VK+ ++ +RIP+IG+KF SR GQ
Sbjct: 7 GTNSRFTRRDHSTSLRHSETGVVDQVLLTTNADGLKFVKIRMKSVRIPQIGNKFTSRPGQ 66
Query: 883 KGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTA 942
KG IG+ EDMPWT GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T
Sbjct: 67 KGTIGMTYTPEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATP 126
Query: 943 FIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHAR 1002
F + + K L + G++ G E MY+G TG+ IF+G YYQRL HMV DKIH+R
Sbjct: 127 FTDVTVDNISKALHKCGYQMRGFERMYNGHTGRLMGDVIFLGPTYYQRLKHMVDDKIHSR 186
Query: 1003 SRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENC 1062
RGPVQ+LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD V +CE C
Sbjct: 187 GRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHICELC 246
Query: 1063 GHIAL 1067
G +A+
Sbjct: 247 GLVAI 251
>emb|CAB43081.1| (AJ133224) RNA polymerase II [Potalia resinifera]
Length = 249
Score = 276 bits (698), Expect = 1e-72
Identities = 131/230 (56%), Positives = 168/230 (72%)
Query: 830 RRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLI 889
+R+ S ++R SE G+VD+V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 20 KRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMT 79
Query: 890 VPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEE 949
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 80 YTQEDMPFTSEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVD 139
Query: 950 KLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
+ K L + G++ G E MY+G TG+ A IF+G YYQRL HMV DKIH+R RGPVQ+
Sbjct: 140 NISKALHKCGYQMRGFERMYNGHTGRPLTATIFLGPTYYQRLKHMVDDKIHSRGRGPVQI 199
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVC 1059
LT+QP EGR+R+GGLRFGEMERD ++ HGAA L ERL ++SD + VC
Sbjct: 200 LTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVC 249
>gb|AAA20242.2| (U12205) RNA-polymerase beta subunit [Mycobacterium tuberculosis]
Length = 1092
Score = 274 bits (694), Expect = 3e-72
Identities = 305/1197 (25%), Positives = 500/1197 (41%), Gaps = 304/1197 (25%)
Query: 4 PTVVEVTPDDL-WIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEV 62
P +++V D W++ W+E R ++ GL+EV+ E I+ +
Sbjct: 51 PGLLDVQTDSFEWLIGSPRWRESAAERGDVNPVG-----GLEEVLYELSPIEDFSGSMSL 105
Query: 63 KFGKIRVGEPEFQEPHGQRKPLYPMD-ARIRNLTYSAPLYL--EMIPVIRGIEQEPVEVR 119
F +P F + P+D + +++TY+APL++ E I G E + V
Sbjct: 106 SFS-----DPRFDDVKA------PVDECKDKDMTYAAPLFVTAEFINNNTG-EIKSQTVF 153
Query: 120 IGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPN---RT 176
+G+ P+M + G FIING+ERV+VS +P
Sbjct: 154 MGDFPMMTEK------------------------GTFIINGTERVVVSQLVRSPGVYFDE 189
Query: 177 LVEKDERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLER 236
++K + + KV R + +R G+ P V +++ALG
Sbjct: 190 TIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTV----LLKALGWTS 245
Query: 237 DKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQA------------- 283
++ IV+ G +I+ LE + + T + L+ KL PG+
Sbjct: 246 EQ-IVERFG----FSEIMRSTLEKDNTVGTDEALLDIYRKL-RPGEPPTKESAQTLLENL 299
Query: 284 ----REYRLKRA-EYVIDNNLLPHIG-------VSPEDRIRKAYYL-----GMMALKV-- 324
+ Y L R Y ++ L H+G ++ ED + YL G + V
Sbjct: 300 FFKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPG 359
Query: 325 -IELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
+E+ + + DD DH+ N+RLR G+L+++ RV S++ + ++ +MT
Sbjct: 360 GVEVPV---ETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVE------ 410
Query: 384 FGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS-- 441
+I P L I +A G + +SQ +D+ N +S L+H RR+++
Sbjct: 411 ----------AITPQTLIN-IRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALG 459
Query: 442 --PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYL 499
L RE+ E RD+H +H+GR+CP ETPEGPN GL+ +L++ A++
Sbjct: 460 PGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNP----------- 508
Query: 500 MSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYED 559
G + R+ V+ G + DG + ++DR VA
Sbjct: 509 --FGFIETPYRK------------VVDGVVSDGIVYLTADEEDRHV--------VAQANS 546
Query: 560 VREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEE 619
+ DGR P ++V + G +EY+ + E +
Sbjct: 547 PIDA-----DGRFVEPRVLVRR------------------------KAGEVEYVPSSEVD 577
Query: 620 NAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQS------ 673
++++ P ++ + ++IP+ EH+ A R GA M +Q+
Sbjct: 578 ----------------YMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRS 621
Query: 674 ----LGLGWA------------------------------------NFRIRVDTRG-HLL 692
+G G +R+R R H
Sbjct: 622 EAPLVGTGMELRAAIDAATSSSQESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGT 681
Query: 693 HYPQIPLVNS--RIMKAVGYEDRPA--------GQNFVVAVLAYHGYNMEDAIIINKASI 742
Q P+V++ R+ D P G+N +VA++ + G+N EDAII++ +
Sbjct: 682 CANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLV 741
Query: 743 ERGLARSTFFRTYEAEEKKY-LGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKV 801
E + S +E + + LG + +IP+ + ++ LDE G++ ++V
Sbjct: 742 EEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNIS------DEVLADLDERGIVRIGAEV 795
Query: 802 EGKDVLIGRTSPPRFLE----ERGLGAV---SLQERRETSVAVRPSERGVVDKVIITETG 854
D+L+G+ +P E ER L A+ +E R+TS+ V E G V + +
Sbjct: 796 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSRE 855
Query: 855 DG-------TKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLI 907
D +LV+V V R GDK A RHG KGVIG I+P EDMP+ G D+I
Sbjct: 856 DEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDII 915
Query: 908 VNPHGIPSRMTVGQLLEA-------IGGKVAALKG------------------RRVDGTA 942
+N HG+P RM +GQ+LE G KV A KG V
Sbjct: 916 LNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPV 975
Query: 943 FIGEPEEKLRKELE--------ELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHM 994
F G E +L+ L ++ G+ +++DG +G+ F + VG +Y +LHH+
Sbjct: 976 FDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHL 1035
Query: 995 VADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEES 1051
V DKIHARS GP ++T+QP G+A+ GG RFGEME + +GAA L E L +S
Sbjct: 1036 VDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKS 1092
>gb|AAA72652.1| (M20391) RNA polymerase subunits B'' [Methanobacterium
thermoautotrophicum]
Length = 278
Score = 273 bits (692), Expect = 6e-72
Identities = 132/255 (51%), Positives = 179/255 (69%), Gaps = 13/255 (5%)
Query: 256 DNLEDASDITTQQE-----ALEYIGKLVAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDR 310
D +E+ D ++E A++YIG VA G +YR+KRAE VID LLPHIG P+ R
Sbjct: 31 DKMEEEMDEEERREYLIRSAIKYIGNRVAKGMTEDYRIKRAEDVIDRYLLPHIGTEPDKR 90
Query: 311 IRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQ 370
+ KA YL M ++++ G+R DKDHY NKRLR++GDL++DLFRVAF+ L +D+ Y+
Sbjct: 91 LEKAVYLAEMTEMLLQVISGERKPHDKDHYTNKRLRVSGDLMEDLFRVAFTSLTRDMSYR 150
Query: 371 MTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYV 430
+ ++ R E V + ++R DVL+E ++HA+ATG W GGR GVSQLLDRT+Y+
Sbjct: 151 LERSLARGKEPSV--------KQAVRSDVLSENLKHAIATGNWVGGRAGVSQLLDRTSYM 202
Query: 431 STLSHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAV 490
TLSH+RRV SPL R QPHFEARDLH T +G+ICP ETPE PNCGLVKNLALMA+I+
Sbjct: 203 GTLSHMRRVVSPLSRSQPHFEARDLHPTQFGKICPNETPESPNCGLVKNLALMAKISEGS 262
Query: 491 PEEEVKEYLMSLGIV 505
+E++E + +G++
Sbjct: 263 DPDEIEEVIKKMGVI 277
>sp|O83269|RPOB_TREPA DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT) >gi|7434709|pir||C71350
probable DNA-directed RNA polymerase, beta subunit (rpoB)
- syphilis spirochete >gi|3322511|gb|AAC65229.1|
(AE001205) DNA-directed RNA polymerase, beta subunit
(rpoB) [Treponema pallidum]
Length = 1178
Score = 265 bits (669), Expect = 3e-69
Identities = 229/819 (27%), Positives = 377/819 (45%), Gaps = 107/819 (13%)
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
+I + G EDD DH N+R+R G+L+ + + AF ++ + + +M+
Sbjct: 403 LIRMYSGDAQEDDIDHLGNRRIRSVGELMTNTLKTAFLRMERIAKERMSSKETE------ 456
Query: 384 FGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS-- 441
+I+P L I+ +A G + +SQ +D+ N ++ L+H RR+ +
Sbjct: 457 ----------TIKPQDLIS-IKPIMAAIKEFFGASQLSQFMDQVNPLAELTHKRRLNALG 505
Query: 442 --PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQIT----TAVPEEEV 495
L RE+ FE RD+H TH+GR+CP ETPEGPN GL+ ++A A++ VP V
Sbjct: 506 PGGLSRERAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSMANYARVNGYGFLEVPYVRV 565
Query: 496 KEYLMSLGIVPIEVR-RPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINV 554
++ G+V E+ + + R Y+ DG V+ + R +
Sbjct: 566 RD-----GVVTKEIEYLDAMDEDRYYIGQDSTAVGPDGVIRVDHVSCRHRGDYSTRSPKD 620
Query: 555 AYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEG-RLKWSDLVRMGVIEYL 613
Y DV + S + P + ++ L ++Q ++G L + + R+G
Sbjct: 621 IQYMDVSPKQIISVSASL-IPFLEHDDANRALMGSNMQ--RQGVPLIFPEPPRVGT---- 673
Query: 614 DAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQS 673
EE+ AY + + ++ T + I+ A+ + P Y
Sbjct: 674 -GMEEKCAYDSGVLVKAKQDGTVAYVSSEKIVVCSAAASGEEQEVVYPLLKYQ------- 725
Query: 674 LGLGWANFRIRVDTRGHLLHYPQIPLVN--SRIMKAVGYEDRPA--------GQNFVVAV 723
R DT H Q P+V+ R+ D PA G+N +V
Sbjct: 726 --------RTNQDTCYH-----QRPIVHVGDRVQVGDALADGPATYRGELALGRNILVGF 772
Query: 724 LAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKK-YLGGQTDKFEIPSPTVRGYRG 782
+ ++GYN EDAI+I+ ++ + S + + E ++ LG + +IP+ +
Sbjct: 773 VPWNGYNYEDAILISHRVVKEDMFTSVHIKEFSTEVRETKLGSERMTNDIPN------KS 826
Query: 783 EKYYRHLDEDGLIFPESKVEGKDVLIGRTSP-------PRFLEERGLGAVSLQERRETSV 835
EK +LD +G+I SKV DVLIG+ +P P F + +E R++S+
Sbjct: 827 EKNLDNLDAEGIIRIGSKVRAGDVLIGKITPKSESETTPEFRLLNSIFGEKAKEVRDSSL 886
Query: 836 AVRPSERGVVDKVIITETGDG-------TKLVKVTVRDLRIPEIGDKFASRHGQKGVIGL 888
V G V V +G +++VKV + R GDK A RHG KG++
Sbjct: 887 RVPHGVEGTVIDVQRLRRSEGDDLNPGVSEVVKVLIATKRKLREGDKMAGRHGNKGIVAR 946
Query: 889 IVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPE 948
I+P+EDMP+ + G D+ +NP G+PSRM +GQ+LE+ G + F
Sbjct: 947 ILPEEDMPYLDDGTPLDVCLNPLGVPSRMNIGQILESELGLAGLRLDEWYESPVFQSPSN 1006
Query: 949 EKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQ 1008
E++ ++L + GF + ++ DG TG F+ +FVGVIY+ +L H+V DK+HARS GP
Sbjct: 1007 EQIGEKLMQAGFPTNSKVMLRDGRTGDYFQNPVFVGVIYFMKLAHLVDDKMHARSTGPYS 1066
Query: 1009 VLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALE 1068
++T+QP G+A+ GG R GEME L +GAA L E L +SD +
Sbjct: 1067 LVTQQPLGGKAQFGGQRLGEMEVWALEAYGAANTLQELLTIKSD---------------D 1111
Query: 1069 DKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVI 1107
R K+Y + + E S + +F +L+ EL+ + +
Sbjct: 1112 MHGRSKIYEAIV-KGEASSPTGIPESFNVLVQELRGLAL 1149
>emb|CAB43075.1| (AJ133228) RNA polymerase II [Mitrasacme pilosa]
Length = 242
Score = 262 bits (663), Expect = 1e-68
Identities = 126/222 (56%), Positives = 161/222 (71%)
Query: 831 RETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIV 890
R+ S ++R SE G VD V++T DG + VKV VR +RIP+IGDKF+SRHGQKG +G+
Sbjct: 19 RDHSTSLRHSENGXVDXVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTY 78
Query: 891 PQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEK 950
QEDMP+T GI PD+IVNPH IPSRMT+GQL+E I GKVAA G+ D T F +
Sbjct: 79 TQEDMPFTVEGICPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDN 138
Query: 951 LRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVL 1010
+ + L + G++ G E MY+G TG+ + IF+G YYQRL HMV DKIH+R RGPVQ+L
Sbjct: 139 ISRALHKCGYQMRGFERMYNGHTGRPLTSTIFLGPXYYQRLKHMVDDKIHSRGRGPVQIL 198
Query: 1011 TKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESD 1052
T+QP EGR+R+GG RFGEMERD ++ H AA L ERLL++SD
Sbjct: 199 TRQPAEGRSRDGGXRFGEMERDCMIAHXAAHFLKERLLDQSD 240
>gb|AAF60349.1|AF242549_1 (AF242549) DNA-dependent RNA polymerase beta subunit [Amycolatopsis
mediterranei]
Length = 1167
Score = 262 bits (662), Expect = 2e-68
Identities = 295/1164 (25%), Positives = 497/1164 (42%), Gaps = 218/1164 (18%)
Query: 42 GLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLY 101
GL+EV++E I+ + F P F E + + + +++TY+APL+
Sbjct: 78 GLEEVLNEISPIEDFSGSMSLSFSA-----PRFDEVKASIE-----ECKDKDMTYAAPLF 127
Query: 102 L--EMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIIN 159
+ E + G E + V +G+ P+M G F+IN
Sbjct: 128 VTAEFVNNNTG-EIKSQTVFLGDFPVMTDK------------------------GTFVIN 162
Query: 160 GSERVIVSIEDIAPNRTL---VEKDERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGI 216
G+ERV+VS +P ++K ++ + +V R + +R G+
Sbjct: 163 GTERVVVSQLVRSPGVYYSKDIDKTSDKDVFSVRVIPSRGAWLEFDVDKRDTVGVRIDRK 222
Query: 217 PNVPKPVKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGK 276
P V +++ALG +A+ + L LE T + L+ K
Sbjct: 223 RRQPVTV----LLKALGWT-----TEAIRERFSFSETLLATLEKDHTAGTDEALLDIYRK 273
Query: 277 LVAPGQ-----------------AREYRL-KRAEYVIDNNL-----LPHIGVSPEDRIRK 313
L PG+ A+ Y L K Y ++ L + + ++ ED +
Sbjct: 274 L-RPGEPPTKESAQTLLENLFFKAKRYDLAKVGRYKVNKKLGLSTPIENGTLTEEDIVTI 332
Query: 314 AYYLGMMALKVIELSLGKRDE-----DDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQ 368
YL + +++ E DD DH+ N+R+R G+L+++ RV S+ + ++
Sbjct: 333 IEYLVRLHAGEDKMTAANNTEIPVETDDIDHFGNRRIRTVGELIQNQIRVGLSRTERVVR 392
Query: 369 YQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTN 428
+MT NI R I +I+ G + +SQ + +TN
Sbjct: 393 ERMTTQDVEAITPQTLINI-RPIGAAIKEFF----------------GTSQLSQFMQQTN 435
Query: 429 YVSTLSHLRRVTS----PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMA 484
+ L+H RR+ + L RE+ E RD+H +H+GR+CP ETPEGPN GL+ +L A
Sbjct: 436 PIDGLTHKRRLNALGPGGLSRERAGMEVRDVHPSHYGRMCPIETPEGPNIGLIGSLCSYA 495
Query: 485 QITT----AVPEEEVKEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTI-EDGKALVERI 539
++ P +V E G V ++ + + ++ I +DG + +R+
Sbjct: 496 RVNPFGFIETPYRKVVE-----GRVTDQIDYLTADEEDRFVKAQANAPISDDGTFIEDRV 550
Query: 540 KKDRRSGKIS--DIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEG 597
R+ G++ D +++ Y + V+ + P + ++ L ++Q
Sbjct: 551 MARRKGGEVELIDPLDIDYMDVSPRQMVSIATAMI--PFLEHDDANRALMGANMQRQAVP 608
Query: 598 RLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEH 657
L+ Y+ E A + V E+ +E + A ++ + H
Sbjct: 609 LLR-------SQAPYVGTGVELRAAIDSGDMLVAEQSGVVEELSADLITVM--------H 653
Query: 658 NAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPA-- 715
+ R +Y ++ R G ++ I RI D P+
Sbjct: 654 DDGTRKSYSL-------------YKFRRSNHGTCFNHRPIVNEGDRIEAGQVIADGPSTE 700
Query: 716 ------GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKY-LGGQTD 768
G+N +VAV+ + G+N EDAII+++ ++ + S +E + + LG +
Sbjct: 701 NGEVALGKNLLVAVMPWEGHNYEDAIILSERLVQDDVLTSIHIEEHEIDARDTKLGAEEI 760
Query: 769 KFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLE----ERGLGA 824
+IP+ + E+ LDE G+I ++V D+L+G+ +P E ER L A
Sbjct: 761 TRDIPNVS------EEVLADLDERGIIRIGAEVRDGDILVGKVTPKGETELTPEERLLRA 814
Query: 825 V---SLQERRETSVAVRPSERGVVDKVIITETGDG-------TKLVKVTVRDLRIPEIGD 874
+ +E R+TS+ V E G V + + D +LV+V V R + GD
Sbjct: 815 IFGEKAREVRDTSLKVPHGETGKVIGIRVFSREDDDELPPGVNELVRVYVAQKRKIQPGD 874
Query: 875 KFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALK 934
K A RHG KGVIG I+P EDMP+ E G D+I+N HG+P RM +GQ+LE G +A+ +
Sbjct: 875 KLAGRHGNKGVIGKILPVEDMPFMEDGTPVDIILNTHGVPRRMNIGQILELHLGWLAS-Q 933
Query: 935 GRRVDGT-----------------------AFIGEPEEKLRKELE--------ELGFKHT 963
G ++G F G EE+L L E K
Sbjct: 934 GWTIEGDPDWAKNLSAELRDVAPGTNTATPVFDGAKEEELTGLLSATKPNRDGERMVKEN 993
Query: 964 GREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGG 1023
G+ ++DG +G+ + + VG +Y +LHH+V DKIHARS GP ++T+QP G+A+ GG
Sbjct: 994 GKANLFDGRSGEPYPYPVAVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGG 1053
Query: 1024 LRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEE 1083
RFGEME + +GAA L E L +SD + R KVY + +
Sbjct: 1054 QRFGEMECWAMQAYGAAYTLQELLTIKSD---------------DVVGRVKVYEAIV-KG 1097
Query: 1084 ERISKVEMSYAFKLLLDELKAMVI 1107
E I + + +FK+LL EL+++ +
Sbjct: 1098 ENIPEPGIPESFKVLLKELQSLCL 1121
>gb|AAA91426.2| (U24494) DNA polymerase [Mycobacterium smegmatis]
Length = 1169
Score = 246 bits (621), Expect = 1e-63
Identities = 302/1220 (24%), Positives = 505/1220 (40%), Gaps = 308/1220 (25%)
Query: 37 AFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTY 96
A IDRG + V + ++ E G + + F +P + + +++TY
Sbjct: 64 AAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLS---FSDPRFDEVKASVDECKDKDMTY 120
Query: 97 SAPLYL--EMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGG 154
+APL++ E I G E + V +G+ P+M + G
Sbjct: 121 AAPLFVTAEFINNNTG-EIKSQTVFMGDFPMMTEK------------------------G 155
Query: 155 YFIINGSERVIVSIEDIAPN---RTLVEKDERQEKYIAKVFSYRHGYRALVTVERKKDGI 211
FIING+ERV+VS +P ++K + + KV R + +R G+
Sbjct: 156 TFIINGTERVVVSQLVRSPGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGV 215
Query: 212 LYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEAL 271
P V +++ALG ++ IV+ G +I+ LE + T + L
Sbjct: 216 RIDRKRRQPVTV----LLKALGWTNEQ-IVERFG----FSEIMMGTLEKDTTSGTDEALL 266
Query: 272 EYIGKLVAPGQA-----------------REYRLKRA-EYVIDNNLLPHIG-------VS 306
+ KL PG+ + Y L R Y ++ L + G ++
Sbjct: 267 DIYRKL-RPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLNAGKPITSSTLT 325
Query: 307 PEDRIRKAYYL-----GMMALKV---IELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRV 358
ED + YL G ++ V +E ++ + D DH+ N+RLR G+L+++ RV
Sbjct: 326 EEDVVATIEYLVRLHEGQTSMTVPGGVEFAV---ESHDIDHFGNRRLRTVGELIQNQIRV 382
Query: 359 AFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRT 418
S++ + ++ +MT +I P L I +A G +
Sbjct: 383 RLSRMERVVRERMTTQDVE----------------AITPQTLIN-IRPVVAAIKEFFGTS 425
Query: 419 GVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHFEARDLHGTHWGRICPTETPEGPNC 474
+SQ +D+ N +S L+H RR+++ L RE+ E RD+H +H+GR+CP ETPEGPN
Sbjct: 426 QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNI 485
Query: 475 GLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKA 534
GL+ +L++ A++ G + R+ V+ G + D
Sbjct: 486 GLIGSLSVYARVNP-------------FGFIETPYRK------------VVEGVVTDQID 520
Query: 535 LVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAI 594
+ ++DR V + +D ENG+ T++ V
Sbjct: 521 YLTADEEDRHV--------------VAQANSPTD-----------ENGR--FTEDRVMVR 553
Query: 595 KEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPY 654
K+G G +E++ A++ + ++++ P ++ + ++IP+
Sbjct: 554 KKG----------GEVEFVSADQVD----------------YMDVSPRQMVSVATAMIPF 587
Query: 655 PEHNAAPRNTYGAGMAKQSLGL---------------------GWAN------------- 680
EH+ A R GA M +Q++ L W++
Sbjct: 588 LEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAVTWSSHKTGVIEEVSADY 647
Query: 681 ------------FRIRVDTRG-HLLHYPQIPLVNS--RIMKAVGYEDRPA--------GQ 717
+R+R R H Q P+V++ R+ D P G+
Sbjct: 648 ITVMADDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGK 707
Query: 718 NFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKY-LGGQTDKFEIPSPT 776
N +VA++ + G+N EDAII++ +E + S +E + + LG + IP +
Sbjct: 708 NLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRVIPKLS 767
Query: 777 VRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLE----ERGLGAV---SLQE 829
++ LDE ++ ++V ++L+G+ +P E ER L A+ +E
Sbjct: 768 ------DEVLADLDEPRIVRIGAEVRDGEILVGKVTPKGETELTPEERLLRAIFGEKARE 821
Query: 830 RRETSVAVRPSERGVVDKVIITETGDG-------TKLVKVTVRDLRIPEIGDKFASRHGQ 882
R+TS+ V E G V + + D +LV+V V R GDK A RHG
Sbjct: 822 VRDTSLKVPHGESGKVIGIRVFSREDDDELPVGVNELVRVYVAQKRKISDGDKLARRHGN 881
Query: 883 KGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTA 942
KGVIG I+P EDMP+ G D+I+N HG + +GQ+LE G A G +D A
Sbjct: 882 KGVIGKILPVEDMPFLPDGTPVDIILNTHGCRVVLNIGQILETHLG-WGAKAGWNIDVLA 940
Query: 943 FIGEPEEKLRKEL----------------------------------EELGFKHTGREIM 968
+ + KL +EL E+ G+ +
Sbjct: 941 GVPDWASKLPEELYSAPADSTVATPVFDGAQEGELAGLLGSTLPNRDGEVMVNADGKATL 1000
Query: 969 YDG-ITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFG 1027
+DG +G+ F + VG +Y +LHH+V DKIHARS GP ++T+QP G+A+ GG RFG
Sbjct: 1001 FDGRSSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFG 1060
Query: 1028 EMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERIS 1087
EME + +GAA L E L +SD T R KVY + + E I
Sbjct: 1061 EMECWAMQAYGAAYTLQELLTIKSDDT---------------VGRVKVYEAIV-KGENIP 1104
Query: 1088 KVEMSYAFKLLLDELKAMVI 1107
+ + +FK+LL EL+++ +
Sbjct: 1105 EPGIPESFKVLLKELQSLCL 1124
>dbj|BAA88887.1| (AB018404) similar to vaccinia A24R [Yaba monkey tumor virus]
Length = 1164
Score = 245 bits (620), Expect = 2e-63
Identities = 247/949 (26%), Positives = 423/949 (44%), Gaps = 113/949 (11%)
Query: 222 PVKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPG 281
P + +Y++ +L +E K+++ + +D ++ + D + +S+ T Q+ L+Y
Sbjct: 257 PNEIIYLVNSL-IESTKELIKGI-SDFDLDTYINDLV--SSEYTKQKSQLQY-------- 304
Query: 282 QAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYA 341
+Y + NN LPH+ SP K +Y+ + K I D+D
Sbjct: 305 -------DEFKYEMINNFLPHMYNSPNQL--KGFYVISLLRKFIYCIYFTYRYPDRDSMV 355
Query: 342 NKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLT 401
R+ G + L + +I+ M ++ RG V NIH + T
Sbjct: 356 CHRVLTYGKYFEILAHDELENYIGNIKTDMINNHKNRGTYSV--NIHV---------LTT 404
Query: 402 ERIEHALATGAWPGG---RTGVSQLLDRTNYVSTLSHLRRVTSPLDREQ--PHFEARDLH 456
HA + G G G + +++ +S R V D+ + F R H
Sbjct: 405 PGFNHAFS-GLLSGKFKKTDGSYRTHPHYSWMQNISIPRSVGYYPDQVKISKMFSVRKYH 463
Query: 457 GTHWGRICPTETPE-GPNCGLVKNLALMAQITTAVP------EEEVKEYLMSLGIVPIEV 509
+ + CP++ PE GP GLV L+++ IT E+++ +Y+ S I
Sbjct: 464 PSQYAYFCPSDVPERGPQVGLVSQLSVLTSITNICTNEYLDLEKKIYKYIKSFSYEDISY 523
Query: 510 RRPSPELWRVYLNGVIIGTIEDGKA--LVERIKKDRRSGKISDI-INVAYYED-VREVYV 565
+ + + L +I ++ K V ++ +R G ++ + + +D + E+ +
Sbjct: 524 FKTG---YYITLENSLIASLNPEKVYDFVNDFRRKKRMGFFGNLEVGITLVQDHMNEIRI 580
Query: 566 NSDDGRVRRPLIIVENGKPKLTKEHVQAIKEG--RLKWSDLVRM--GVIEYLDAEEEENA 621
N GR+ RP +++++G+ + V+ +KE +SD+++ V+E +D E+ +
Sbjct: 581 NIGGGRLIRPFLVIDDGELVMDTV-VERLKEKIEDFTFSDILKEFPNVVEMVDIEQFTFS 639
Query: 622 YVA-----MWPWEVTEEHT-HLELMPAAIL-GLPASLIPYPEHNAAPRNTYGAGMAKQSL 674
V TE HL P+ G AS + HN+ PR G AKQ++
Sbjct: 640 NVCESVQKFKSLSKTERFKYHLCDFPSEFRDGYVASSLVGINHNSGPRAILGCAQAKQAI 699
Query: 675 GLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDA 734
++ R ++D HL+ YP+ P+V S+ ++ GQ+ ++A+++Y G N ED
Sbjct: 700 SCLSSDIRNKIDNGIHLI-YPERPIVLSKALETSKIAVNCFGQHVMIALMSYKGMNQEDG 758
Query: 735 IIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGL 794
III K ++RG + ++ E L +K + S + Y LD +GL
Sbjct: 759 IIIKKQFVDRGGLDIITAKKHQVEIP--LENFNNKERVKSTS---------YSKLDSNGL 807
Query: 795 IFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQ---ERRETSVAVRPSERGVVDKVIIT 851
+ + +E D I R + LE+ + + R T + ER VD
Sbjct: 808 VKLNAFLENGDA-IARNISSKTLEDDFVNDNQISFDISERYTDMYKSRVERVQVDLT--- 863
Query: 852 ETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPH 911
D K+ +T+++ R P +GDKF SR QKG + I + D+P+ ++GI PD+I+N
Sbjct: 864 ---DKVKVRVLTMKE-RKPILGDKFTSRTSQKGTVAFIADEADLPYDDNGIKPDVIINST 919
Query: 912 GIPSRMTVGQLLEAIGGKVAALK----GRRVDGTAFIGEPEEKLRKELE----------- 956
I SR T+ L+E I A K + F E + LE
Sbjct: 920 SIFSRKTLSMLVEVILTSAYASKPYNNNEQNRPICFPSSNETSIDTYLEFAKKCYKSVYA 979
Query: 957 -----ELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLT 1011
E+ K +I+YD T +++ +F+G IYY RL H+ DK R RG L
Sbjct: 980 NLNENEIDDKVFCEKILYDPETDVPYKSKVFMGPIYYLRLRHLTQDKATVRCRGKKTKLI 1039
Query: 1012 KQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLE-ESDKTEVWVCENCGHIALEDK 1070
+Q EGR R GG++FGEMERD L+ HGAA + E L + E D EV+VCENCG I K
Sbjct: 1040 RQANEGRRRGGGIKFGEMERDCLIAHGAANTITEILKDSEEDYQEVYVCENCGDITANVK 1099
Query: 1071 RRHKVYCPVCGEEER---ISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
C C ++ ++KV+ ++ K+ + ++ A ++ K+ +R
Sbjct: 1100 GNK--ICIRCSKQNLSTILTKVDTTHVSKVFITQMNARGVKVKMEFEKR 1146
>emb|CAC10529.1| (Y16466) DNA-dependent RNA polymerase subunit beta [Clostridium
botulinum]
Length = 961
Score = 244 bits (617), Expect = 3e-63
Identities = 226/805 (28%), Positives = 362/805 (44%), Gaps = 136/805 (16%)
Query: 260 DASDITTQQEALEYIGKLVAPGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGM 319
D SD+ ++ + K + A E +K I N+ I P+ IR+ Y +
Sbjct: 240 DISDLNIKEYVFYPVLKEILDNYADEESIKEE---IRKNIYRLI---PKHIIREDIYATI 293
Query: 320 MALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRG 379
+ +G +D D DH N+RLR G+LL+ + S++ + ++ +MT Q
Sbjct: 294 NYELALSYDIGYKD--DIDHLGNRRLRSVGELLQINLELGLSRMERVVKERMTIQDQEVI 351
Query: 380 EKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRV 439
NI R + SI+ G + +SQ +D+TN +S L+H RR+
Sbjct: 352 TPQALINI-RPVAASIKEFF----------------GSSQLSQFMDQTNPLSELTHKRRL 394
Query: 440 TS----PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEV 495
++ L RE+ FE RD+H +H+GR+CP ETPEGPN GL+ +LA A+ V
Sbjct: 395 SALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFAK---------V 445
Query: 496 KEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVA 555
EY G + RR P K++R+ +DI+ +
Sbjct: 446 NEY----GFIETPYRRIDP--------------------------KNKRA--TNDIVYMT 473
Query: 556 YYEDVREVYVNSDDGRVRRPLIIVENG---KPKLT---KEHVQAIKEGRLKWSDLVRMGV 609
E+ V SD+ I ENG K+T KE V + +++ D+ +
Sbjct: 474 ADEEDLYVIARSDEP-------IDENGYFIDDKVTVRAKEEVLVVPVSEVEYMDISPRQL 526
Query: 610 IEYLDAE----EEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTY 665
+ A E ++A A+ + + L A I+G + P+
Sbjct: 527 VSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIVGTGIEYKAATDSGVLPK--- 583
Query: 666 GAGMAKQSLGLGWANFRIRVDTRGHLLHYP--------------QIPLVNSR--IMKAVG 709
A A + + R+R D+ G + Y Q P+V+ + K
Sbjct: 584 -AKNAGTVVYVSADEIRVRRDSDGGIDKYKLLKFKRSNQGTCINQRPIVSKGEVVAKETL 642
Query: 710 YEDRPA--------GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKK 761
D P+ G+N ++ + + GYN EDA++I++ ++ + S YEAE +
Sbjct: 643 LADGPSTDLGEIALGKNILMGFITWEGYNYEDAMLISEQLVKEDVFTSIHIEEYEAEARD 702
Query: 762 Y-LGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPR----F 816
LG + +IP GE+ + +DE G+I ++V D+L+G+ +P
Sbjct: 703 TKLGPEEITRDIPDV------GEEALKDIDERGIIRIGAEVRSGDILVGKVTPKGETELT 756
Query: 817 LEERGLGAV---SLQERRETSVAVRPSERGVVD--KVIITETGDG-----TKLVKVTVRD 866
EER L A+ +E R+TS+ V E G++ K+ E GD KLV+ +
Sbjct: 757 AEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKIFTRENGDELPPGVNKLVRCYIAQ 816
Query: 867 LRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAI 926
R +GDK A RHG KGVI ++P+EDMP+ G + +NP G+PSRM +GQ+LE
Sbjct: 817 KRKISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVH 876
Query: 927 GGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVI 986
G A+ G + F G E + L + G+ G+ ++YDG TG+ F+ + VG +
Sbjct: 877 LGLAASKLGWHIATPVFDGAIESDIVDCLRKAGYSEDGKTVLYDGRTGEPFDNRVTVGYM 936
Query: 987 YYQRLHHMVADKIHARSRGPVQVLT 1011
Y +L H+V DKIHARS GP ++T
Sbjct: 937 YILKLAHLVDDKIHARSTGPYSLVT 961
>pir||T37411 RNA polymerase subunit rpo132 - vaccinia virus (strain Ankara)
>gi|2772787|gb|AAB96526.1| (U94848) RNA polymerase
subunit rpo132 [Vaccinia virus]
Length = 1156
Score = 241 bits (608), Expect = 4e-62
Identities = 240/947 (25%), Positives = 415/947 (43%), Gaps = 97/947 (10%)
Query: 223 VKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPG- 281
V ++ R+L + ++V V + D+ + ++ T YI LV
Sbjct: 235 VSLEFIRRSLSYDMPPEVVYLVN-------AIIDSAKRITESITDFNIDTYINDLVEAEH 287
Query: 282 --QAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDH 339
Q + + +Y + +N LPH+ +P+ K +Y+ + K + D+D
Sbjct: 288 IKQKSQLTINEFKYEMLHNFLPHMNYTPDQL--KGFYMISLLRKFLYCIYHTSRYPDRDS 345
Query: 340 YANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDV 399
R+ G + L + +I+ + ++ RG V NIH +
Sbjct: 346 MVCHRILTYGKYFETLAHDELENYIGNIRNDIMNNHKNRGTYAV--NIHV---------L 394
Query: 400 LTERIEHALATGAWPGGRTGVSQLLDRTN----YVSTLSHLRRVTSPLDREQ--PHFEAR 453
T + HA ++ G+ S RT+ ++ +S R V D+ + F R
Sbjct: 395 TTPGLNHAFSSLL--SGKFKKSDGSYRTHPHYSWMQNISIPRSVGFYPDQVKISKMFSVR 452
Query: 454 DLHGTHWGRICPTETPE-GPNCGLVKNLALMAQITTAVP------EEEVKEYLMSLGIVP 506
H + + C ++ PE GP GLV L++++ IT + E+++ EY+ S
Sbjct: 453 KYHPSQYLYFCSSDVPERGPQVGLVSQLSVLSSITNILTSEYLDLEKKICEYIRSYYKDD 512
Query: 507 IEVRRPSPELWRVYLNGVIIGTIEDGKA--LVERIKKDRRSGKISDI-INVAYYED-VRE 562
I + + + ++ ++ V ++ +R G ++ + + D + E
Sbjct: 513 ISYFETG---FPITIENALVASLNPNMICDFVTDFRRRKRMGFFGNLEVGITLVRDHMNE 569
Query: 563 VYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRM--GVIEYLDAEEEEN 620
+ +N GR+ RP ++V+NG+ + + + +SD+ + VIE +D E+
Sbjct: 570 IRINIGAGRLVRPFLVVDNGELMMDVCPELESRLDDMTFSDIQKEFPHVIEMVDIEQFTF 629
Query: 621 AYVA----MWPWEVTEEHTHLEL--MPAAIL-GLPASLIPYPEHNAAPRNTYGAGMAKQS 673
+ V + +E +L PA G AS + HN+ PR G AKQ+
Sbjct: 630 SNVCESVQKFRMMSKDERKQYDLCDFPAEFRDGYVASSLVGINHNSGPRAILGCAQAKQA 689
Query: 674 LGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMED 733
+ ++ R ++D HL+ YP+ P+V S+ ++ GQ+ +A+++Y G N ED
Sbjct: 690 ISCLSSDIRNKIDNGIHLM-YPERPIVISKALETSKIAANCFGQHVTIALMSYKGINQED 748
Query: 734 AIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDE 791
III K I+RG + ++ E IP ++ Y L+
Sbjct: 749 GIIIKKQFIQRGGLDIVTAKKHQVE-------------IPLENFNNKERDRSNAYSKLES 795
Query: 792 DGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIIT 851
+GL+ + +E D I R R LE+ A Q + S + V++V +
Sbjct: 796 NGLVRLNAFLESGDA-IARNISSRTLEDDF--ARDNQISFDVSEKYTDMYKSRVERVQV- 851
Query: 852 ETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPH 911
E D K+ +T+++ R P +GDKF +R QKG + I + ++P+ E+GI PD+I+N
Sbjct: 852 ELTDKVKVRVLTMKERR-PILGDKFTTRTSQKGTVAYIADETELPYDENGITPDVIINST 910
Query: 912 GIPSRMTVGQLLEAIGGKVAALKGRRVDG----TAFIGEPEEKLRKEL------------ 955
I SR T+ L+E I + K G F E + +
Sbjct: 911 SIFSRKTISMLIEVILTAAYSAKPYNNKGENRPVCFPSSNETSIDTYMQFAKQCYEHSNP 970
Query: 956 ----EELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLT 1011
EEL K +I+YD T K + + +F G IYY RL H+ DK R RG L
Sbjct: 971 KLSDEELSDKIFCEKILYDPETDKPYASKVFFGPIYYLRLRHLTQDKATVRCRGKKTKLI 1030
Query: 1012 KQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLE-ESDKTEVWVCENCGHIALEDK 1070
+Q EGR R GG++FGEMERD L+ HGAA + E L + E D +V+VCENCG IA + K
Sbjct: 1031 RQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQDVYVCENCGDIAAQIK 1090
Query: 1071 RRHK-VYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
+ + C ++K++ ++ K+ L ++ A ++ KL+ R
Sbjct: 1091 GINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNARGVKVKLDFERR 1137
>sp|P17474|RPO2_COWPX DNA-DIRECTED RNA POLYMERASE 132 KDA POLYPEPTIDE >gi|66989|pir||RNVZCP
DNA-directed RNA polymerase (EC 2.7.7.6) 132K chain -
cowpox virus (strain Brighton Red)
>gi|323394|gb|AAA42919.1| (M26173) rpo132 RNA polymerase
(late) [Cowpox virus]
Length = 1164
Score = 240 bits (606), Expect = 7e-62
Identities = 239/947 (25%), Positives = 415/947 (43%), Gaps = 97/947 (10%)
Query: 223 VKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPG- 281
V ++ R+L + ++V V + D+ + ++ T YI LV
Sbjct: 243 VSLEFIRRSLSYDMPPEVVYLVN-------AIIDSAKRLTESITDFNIDTYINDLVEAEH 295
Query: 282 --QAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDH 339
Q + + +Y + +N LPH+ +P+ K +Y+ + K + D+D
Sbjct: 296 IKQKSQLTINEFKYEMLHNFLPHMNYTPDQL--KGFYMISLLRKFLYCIYHTSRYPDRDS 353
Query: 340 YANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDV 399
R+ G + L + +I+ + ++ RG V NIH +
Sbjct: 354 MVCHRILTYGKYFETLAHDELENYIGNIRNDIMNNHKNRGTYAV--NIHV---------L 402
Query: 400 LTERIEHALATGAWPGGRTGVSQLLDRTN----YVSTLSHLRRVTSPLDREQ--PHFEAR 453
T + HA ++ G+ S RT+ ++ +S R V D+ + F R
Sbjct: 403 TTPGLNHAFSSLL--SGKFKKSDGSYRTHPHYSWMQNISIPRSVGFYPDQVKISKMFSVR 460
Query: 454 DLHGTHWGRICPTETPE-GPNCGLVKNLALMAQITTAVP------EEEVKEYLMSLGIVP 506
H + + C ++ PE GP GLV L++++ IT + E+++ EY+ S
Sbjct: 461 KYHPSQYLYFCSSDVPERGPQVGLVSQLSVLSSITNILTSEYLDLEKKICEYIRSYYKDD 520
Query: 507 IEVRRPSPELWRVYLNGVIIGTIEDGKA--LVERIKKDRRSGKISDI-INVAYYED-VRE 562
I + + + ++ ++ V ++ +R G ++ + + D + E
Sbjct: 521 ISYFETG---FPITIENALVASLNPNMICDFVTDFRRRKRMGFFGNLEVGITLVRDHMNE 577
Query: 563 VYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRM--GVIEYLDAEEEEN 620
+ +N GR+ RP ++V+NG+ + + + +SD+ + VIE +D E+
Sbjct: 578 IRINIGAGRLVRPFLVVDNGELMMDVCPELESRLDDMTFSDIQKEFPHVIEMVDIEQFTF 637
Query: 621 AYVA----MWPWEVTEEHTHLEL--MPAAIL-GLPASLIPYPEHNAAPRNTYGAGMAKQS 673
+ V + +E +L PA G AS + HN+ PR G AKQ+
Sbjct: 638 SNVCESVQKFRMMSKDERKQYDLCDFPAEFRDGYVASSLVGINHNSGPRAILGCAQAKQA 697
Query: 674 LGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMED 733
+ ++ R ++D HL+ YP+ P+V S+ ++ GQ+ +A+++Y G N ED
Sbjct: 698 ISCLSSDIRNKIDNGIHLM-YPERPIVISKALETSKIAANCFGQHVTIALMSYKGINQED 756
Query: 734 AIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDE 791
III K I+RG + ++ E IP ++ Y L+
Sbjct: 757 GIIIKKQFIQRGGLDIVTAKKHQVE-------------IPLENFNNKERDRSNAYSKLES 803
Query: 792 DGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIIT 851
+GL+ + +E D + R R LE+ A Q + S + V++V +
Sbjct: 804 NGLVRLNAFLESGDAM-ARNISSRTLEDDF--ARDNQISFDVSEKYTDMYKSRVERVQV- 859
Query: 852 ETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPH 911
E D K+ +T+++ R P +GDKF +R QKG + I + ++P+ E+GI PD+I+N
Sbjct: 860 ELTDKVKVRVLTMKERR-PILGDKFTTRTSQKGTVAYIADETELPYDENGITPDVIINST 918
Query: 912 GIPSRMTVGQLLEAIGGKVAALKGRRVDG----TAFIGEPEEKLRKEL------------ 955
I SR T+ L+E I + K G F E + +
Sbjct: 919 SIFSRKTISMLIEVILTAAYSAKPYNNKGENRPVCFPSSNETSIDTYMQFAKQCYEHSNP 978
Query: 956 ----EELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLT 1011
EEL K +I+YD T K + + +F G IYY RL H+ DK R RG L
Sbjct: 979 KLSDEELSDKIFCEKILYDPETDKPYASKVFFGPIYYLRLRHLTQDKATVRCRGKKTKLI 1038
Query: 1012 KQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLE-ESDKTEVWVCENCGHIALEDK 1070
+Q EGR R GG++FGEMERD L+ HGAA + E L + E D +V+VCENCG IA + K
Sbjct: 1039 RQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQDVYVCENCGDIAAQIK 1098
Query: 1071 RRHK-VYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
+ + C ++K++ ++ K+ L ++ A ++ KL+ R
Sbjct: 1099 GINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNARGVKVKLDFERR 1145
>gb|AAA42920.1| (M26173) rpo132 RNA polymerase (early and late) [Cowpox virus]
Length = 1156
Score = 240 bits (606), Expect = 7e-62
Identities = 239/947 (25%), Positives = 415/947 (43%), Gaps = 97/947 (10%)
Query: 223 VKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPG- 281
V ++ R+L + ++V V + D+ + ++ T YI LV
Sbjct: 235 VSLEFIRRSLSYDMPPEVVYLVN-------AIIDSAKRLTESITDFNIDTYINDLVEAEH 287
Query: 282 --QAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDH 339
Q + + +Y + +N LPH+ +P+ K +Y+ + K + D+D
Sbjct: 288 IKQKSQLTINEFKYEMLHNFLPHMNYTPDQL--KGFYMISLLRKFLYCIYHTSRYPDRDS 345
Query: 340 YANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDV 399
R+ G + L + +I+ + ++ RG V NIH +
Sbjct: 346 MVCHRILTYGKYFETLAHDELENYIGNIRNDIMNNHKNRGTYAV--NIHV---------L 394
Query: 400 LTERIEHALATGAWPGGRTGVSQLLDRTN----YVSTLSHLRRVTSPLDREQ--PHFEAR 453
T + HA ++ G+ S RT+ ++ +S R V D+ + F R
Sbjct: 395 TTPGLNHAFSSLL--SGKFKKSDGSYRTHPHYSWMQNISIPRSVGFYPDQVKISKMFSVR 452
Query: 454 DLHGTHWGRICPTETPE-GPNCGLVKNLALMAQITTAVP------EEEVKEYLMSLGIVP 506
H + + C ++ PE GP GLV L++++ IT + E+++ EY+ S
Sbjct: 453 KYHPSQYLYFCSSDVPERGPQVGLVSQLSVLSSITNILTSEYLDLEKKICEYIRSYYKDD 512
Query: 507 IEVRRPSPELWRVYLNGVIIGTIEDGKA--LVERIKKDRRSGKISDI-INVAYYED-VRE 562
I + + + ++ ++ V ++ +R G ++ + + D + E
Sbjct: 513 ISYFETG---FPITIENALVASLNPNMICDFVTDFRRRKRMGFFGNLEVGITLVRDHMNE 569
Query: 563 VYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRM--GVIEYLDAEEEEN 620
+ +N GR+ RP ++V+NG+ + + + +SD+ + VIE +D E+
Sbjct: 570 IRINIGAGRLVRPFLVVDNGELMMDVCPELESRLDDMTFSDIQKEFPHVIEMVDIEQFTF 629
Query: 621 AYVA----MWPWEVTEEHTHLEL--MPAAIL-GLPASLIPYPEHNAAPRNTYGAGMAKQS 673
+ V + +E +L PA G AS + HN+ PR G AKQ+
Sbjct: 630 SNVCESVQKFRMMSKDERKQYDLCDFPAEFRDGYVASSLVGINHNSGPRAILGCAQAKQA 689
Query: 674 LGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMED 733
+ ++ R ++D HL+ YP+ P+V S+ ++ GQ+ +A+++Y G N ED
Sbjct: 690 ISCLSSDIRNKIDNGIHLM-YPERPIVISKALETSKIAANCFGQHVTIALMSYKGINQED 748
Query: 734 AIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDE 791
III K I+RG + ++ E IP ++ Y L+
Sbjct: 749 GIIIKKQFIQRGGLDIVTAKKHQVE-------------IPLENFNNKERDRSNAYSKLES 795
Query: 792 DGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIIT 851
+GL+ + +E D + R R LE+ A Q + S + V++V +
Sbjct: 796 NGLVRLNAFLESGDAM-ARNISSRTLEDDF--ARDNQISFDVSEKYTDMYKSRVERVQV- 851
Query: 852 ETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPH 911
E D K+ +T+++ R P +GDKF +R QKG + I + ++P+ E+GI PD+I+N
Sbjct: 852 ELTDKVKVRVLTMKERR-PILGDKFTTRTSQKGTVAYIADETELPYDENGITPDVIINST 910
Query: 912 GIPSRMTVGQLLEAIGGKVAALKGRRVDG----TAFIGEPEEKLRKEL------------ 955
I SR T+ L+E I + K G F E + +
Sbjct: 911 SIFSRKTISMLIEVILTAAYSAKPYNNKGENRPVCFPSSNETSIDTYMQFAKQCYEHSNP 970
Query: 956 ----EELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLT 1011
EEL K +I+YD T K + + +F G IYY RL H+ DK R RG L
Sbjct: 971 KLSDEELSDKIFCEKILYDPETDKPYASKVFFGPIYYLRLRHLTQDKATVRCRGKKTKLI 1030
Query: 1012 KQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLE-ESDKTEVWVCENCGHIALEDK 1070
+Q EGR R GG++FGEMERD L+ HGAA + E L + E D +V+VCENCG IA + K
Sbjct: 1031 RQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQDVYVCENCGDIAAQIK 1090
Query: 1071 RRHK-VYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
+ + C ++K++ ++ K+ L ++ A ++ KL+ R
Sbjct: 1091 GINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNARGVKVKLDFERR 1137
>gi|9627649 A24R [Variola virus] >gi|464676|sp|P33811|RPO2_VARV DNA-DIRECTED RNA
POLYMERASE 132 KD POLYPEPTIDE >gi|419197|pir||G36850 A24R
protein - variola virus (strain India-1967)
>gi|297307|emb|CAA49069.1| (X69198) A24R [Variola virus]
>gi|745248|prf||2015436EU A24R gene [Variola major virus]
Length = 1164
Score = 240 bits (606), Expect = 7e-62
Identities = 239/947 (25%), Positives = 417/947 (43%), Gaps = 97/947 (10%)
Query: 223 VKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPG- 281
V ++ R+L + ++V V + D+ + ++ T YI LV
Sbjct: 243 VSLGFIRRSLSYDMPPEVVYLVN-------AIIDSAKRLTESITDFNIDTYINDLVEAEH 295
Query: 282 --QAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDH 339
Q + + +Y + +N LPH+ +P+ K +Y+ + K + D+D
Sbjct: 296 VKQKSQLTINEFKYEMLHNFLPHMNYTPDQL--KGFYMISLLRKFLYCIYYTSRYPDRDS 353
Query: 340 YANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDV 399
R+ G + L + +I+ + ++ RG V NIH +
Sbjct: 354 MVCHRILTYGKYFETLAHDELENYIGNIRNDIMNNHKNRGTYAV--NIHV---------L 402
Query: 400 LTERIEHALATGAWPGGRTGVSQLLDRTN----YVSTLSHLRRVTSPLDREQ--PHFEAR 453
T + HA ++ G+ S RT+ ++ +S R V D+ + F R
Sbjct: 403 TTPGLNHAFSSLL--SGKFKKSDGSYRTHPHYSWMQNISIPRSVGFYPDQVKISKMFSVR 460
Query: 454 DLHGTHWGRICPTETPE-GPNCGLVKNLALMAQITTAVP------EEEVKEYLMSLGIVP 506
H + + C ++ PE GP GLV L++++ IT + E+++ EY+ S
Sbjct: 461 KYHPSQYLYFCSSDVPERGPQVGLVSQLSVLSSITNILTSEYLDLEKKICEYIRSYYKDD 520
Query: 507 IEVRRPSPELWRVYLNGVIIGTIEDGKA--LVERIKKDRRSGKISDI-INVAYYED-VRE 562
I + + + ++ ++ V ++ +R G ++ + + D + E
Sbjct: 521 ISYFETG---FPITIENALVASLNPNMICDFVTDFRRRKRMGFFGNLEVGITLVRDHMNE 577
Query: 563 VYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRM--GVIEYLDAEEEEN 620
+ +N GR+ RP ++V+NG+ + + + +SD+ + VIE +D E+
Sbjct: 578 IRINIGAGRLVRPFLVVDNGELMMDVCPELESRLDDMTFSDIQKEFPHVIEMVDIEQFTF 637
Query: 621 AYVA----MWPWEVTEEHTHLEL--MPAAIL-GLPASLIPYPEHNAAPRNTYGAGMAKQS 673
+ V + +E +L PA G AS + HN+ PR G AKQ+
Sbjct: 638 SNVCESVQKFRMMSKDERKQYDLCDFPAEFRDGYVASSLVGINHNSGPRAILGCAQAKQA 697
Query: 674 LGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMED 733
+ ++ R ++D HL+ YP+ P+V S+ ++ GQ+ +A+++Y G N ED
Sbjct: 698 ISCLSSDIRNKIDNGIHLM-YPERPIVISKALETSKIAANCFGQHVTIALMSYKGINQED 756
Query: 734 AIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDE 791
III K I+RG + ++ E IP ++ Y L+
Sbjct: 757 GIIIKKQFIQRGGLDIVTAKKHQVE-------------IPLENFNNKERDRSNAYSKLES 803
Query: 792 DGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIIT 851
+GL+ + +E D + R R LE+ A Q + S + V++V +
Sbjct: 804 NGLVRLNAFLESGDAM-ARNISSRTLEDDF--ARDNQISFDVSEKYTDMYKSRVERVQV- 859
Query: 852 ETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPH 911
E D K+ +T+++ R P +GDKF +R QKG + I + ++P+ E+GI PD+I+N
Sbjct: 860 ELTDKVKVRVLTMKERR-PILGDKFTTRTSQKGTVAYIADETELPYDENGITPDVIINST 918
Query: 912 GIPSRMTVGQLLEAIGGKVAALKGRRVDGT------------------AFIGEPEEKLRK 953
I SR T+ L+E I + K G F + E L
Sbjct: 919 SIFSRKTISMLIEVILTAAYSAKPYNNKGENRPVCFPSSNETSIDTYMQFAKQCYEHLNP 978
Query: 954 EL--EELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLT 1011
+L +EL K +I+YD T K + + +F G IYY RL H+ DK R RG L
Sbjct: 979 KLTEKELSDKIFCEKILYDPETDKPYASKVFFGPIYYLRLRHLTQDKATVRCRGKKTKLI 1038
Query: 1012 KQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLE-ESDKTEVWVCENCGHIALEDK 1070
+Q EGR R GG++FGEMERD L+ HGAA + E L + E D +V++CENCG IA + K
Sbjct: 1039 RQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQDVYICENCGDIAAQIK 1098
Query: 1071 RRHK-VYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
+ + C ++K++ ++ K+ L ++ A ++ KL+ R
Sbjct: 1099 SINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNARGVKVKLDFERR 1145
>pir||T28566 DNA-directed RNA polymerase (EC 2.7.7.6) 133K chain - variola major
virus >gi|439046|gb|AAA60876.1| (L22579) homolog of
vaccinia virus CDS A24R (RNA polymerase, 132 kDa
subunit); putative [Variola major virus]
Length = 1164
Score = 240 bits (606), Expect = 7e-62
Identities = 239/947 (25%), Positives = 417/947 (43%), Gaps = 97/947 (10%)
Query: 223 VKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPG- 281
V ++ R+L + ++V V + D+ + ++ T YI LV
Sbjct: 243 VSLGFIRRSLSYDMPPEVVYLVN-------AIIDSAKRLTESITDFNIDTYINDLVEAEH 295
Query: 282 --QAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDH 339
Q + + +Y + +N LPH+ +P+ K +Y+ + K + D+D
Sbjct: 296 VKQKSQLTINEFKYEMLHNFLPHMNYTPDQL--KGFYMISLLRKFLYCIYYTSRYPDRDS 353
Query: 340 YANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDV 399
R+ G + L + +I+ + ++ RG V NIH +
Sbjct: 354 MVCHRILTYGKYFETLAHDELENYIGNIRNDIMNNHKNRGTYAV--NIHV---------L 402
Query: 400 LTERIEHALATGAWPGGRTGVSQLLDRTN----YVSTLSHLRRVTSPLDREQ--PHFEAR 453
T + HA ++ G+ S RT+ ++ +S R V D+ + F R
Sbjct: 403 TTPGLNHAFSSLL--SGKFKKSDGSYRTHPHYSWMQNISIPRSVGFYPDQVKISKMFSVR 460
Query: 454 DLHGTHWGRICPTETPE-GPNCGLVKNLALMAQITTAVP------EEEVKEYLMSLGIVP 506
H + + C ++ PE GP GLV L++++ IT + E+++ EY+ S
Sbjct: 461 KYHPSQYLYFCSSDVPERGPQVGLVSQLSVLSSITNILTSEYLDLEKKICEYIRSYYKDD 520
Query: 507 IEVRRPSPELWRVYLNGVIIGTIEDGKA--LVERIKKDRRSGKISDI-INVAYYED-VRE 562
I + + + ++ ++ V ++ +R G ++ + + D + E
Sbjct: 521 ISYFETG---FPITIENALVASLNPNMICDFVTDFRRRKRMGFFGNLEVGITLVRDHMNE 577
Query: 563 VYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRM--GVIEYLDAEEEEN 620
+ +N GR+ RP ++V+NG+ + + + +SD+ + VIE +D E+
Sbjct: 578 IRINIGAGRLVRPFLVVDNGELMMDVCPELESRLDDMTFSDIQKEFPHVIEMVDIEQFTF 637
Query: 621 AYVA----MWPWEVTEEHTHLEL--MPAAIL-GLPASLIPYPEHNAAPRNTYGAGMAKQS 673
+ V + +E +L PA G AS + HN+ PR G AKQ+
Sbjct: 638 SNVCESVQKFRMMSKDERKQYDLCDFPAEFRDGYVASSLVGINHNSGPRAILGCAQAKQA 697
Query: 674 LGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMED 733
+ ++ R ++D HL+ YP+ P+V S+ ++ GQ+ +A+++Y G N ED
Sbjct: 698 ISCLSSDIRNKIDNGIHLM-YPERPIVISKALETSKIAANCFGQHVTIALMSYKGINQED 756
Query: 734 AIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDE 791
III K I+RG + ++ E IP ++ Y L+
Sbjct: 757 GIIIKKQFIQRGGLDIVTAKKHQVE-------------IPLENFNNKERDRSNAYSKLES 803
Query: 792 DGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIIT 851
+GL+ + +E D + R R LE+ A Q + S + V++V +
Sbjct: 804 NGLVRLNAFLESGDAM-ARNISSRTLEDDF--ARDNQISFDVSEKYTDMYKSRVERVQV- 859
Query: 852 ETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPH 911
E D K+ +T+++ R P +GDKF +R QKG + I + ++P+ E+GI PD+I+N
Sbjct: 860 ELTDKVKVRVLTMKERR-PILGDKFTTRTSQKGTVAYIADETELPYDENGITPDVIINST 918
Query: 912 GIPSRMTVGQLLEAIGGKVAALKGRRVDGT------------------AFIGEPEEKLRK 953
I SR T+ L+E I + K G F + E L
Sbjct: 919 SIFSRKTISMLIEVILTAAYSAKPYNNKGENRPVCFPSSNETSIDTYMQFAKQCYEHLNP 978
Query: 954 EL--EELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLT 1011
+L +EL K +I+YD T K + + +F G IYY RL H+ DK R RG L
Sbjct: 979 KLTEKELSDKIFCEKILYDPETDKPYASKVFFGPIYYLRLRHLTQDKATVRCRGKKTKLI 1038
Query: 1012 KQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLE-ESDKTEVWVCENCGHIALEDK 1070
+Q EGR R GG++FGEMERD L+ HGAA + E L + E D +V++CENCG IA + K
Sbjct: 1039 RQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQDVYICENCGDIAAQIK 1098
Query: 1071 RRHK-VYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
+ + C ++K++ ++ K+ L ++ A ++ KL+ R
Sbjct: 1099 SINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNARGVKVKLDFERR 1145
>gi|9791084 A24R; putative [Vaccinia virus] >gi|133383|sp|P19798|RPO2_VACCV
DNA-DIRECTED RNA POLYMERASE 132 KD POLYPEPTIDE
>gi|66990|pir||RNVZ8T DNA-directed RNA polymerase (EC
2.7.7.6) 132K chain - vaccinia virus
>gi|335496|gb|AAA48148.1| (M35027) A24R; putative
[Vaccinia virus] >gi|335801|gb|AAA72882.1| (M37415) RNA
polymerase subunit rpo132 [Vaccinia virus]
Length = 1164
Score = 240 bits (605), Expect = 9e-62
Identities = 238/947 (25%), Positives = 415/947 (43%), Gaps = 97/947 (10%)
Query: 223 VKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPG- 281
V ++ R+L + ++V V + D+ + ++ T YI LV
Sbjct: 243 VSLEFIRRSLSYDMPPEVVYLVN-------AIIDSAKRITESITDFNIDTYINDLVEAEH 295
Query: 282 --QAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDH 339
Q + + +Y + +N LPH+ +P+ K +Y+ + K + D+D
Sbjct: 296 IKQKSQLTINEFKYEMLHNFLPHMNYTPDQL--KGFYMISLLRKFLYCIYHTSRYPDRDS 353
Query: 340 YANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDV 399
R+ G + L + +I+ + ++ RG V NIH +
Sbjct: 354 MVCHRILTYGKYFETLAHDELENYIGNIRNDIMNNHKNRGTYAV--NIHV---------L 402
Query: 400 LTERIEHALATGAWPGGRTGVSQLLDRTN----YVSTLSHLRRVTSPLDREQ--PHFEAR 453
T + HA ++ G+ S RT+ ++ +S R V D+ + F R
Sbjct: 403 TTPGLNHAFSSLL--SGKFKKSDGSYRTHPHYSWMQNISIPRSVGFYPDQVKISKMFSVR 460
Query: 454 DLHGTHWGRICPTETPE-GPNCGLVKNLALMAQITTAVP------EEEVKEYLMSLGIVP 506
H + + C ++ PE GP GLV L++++ IT + E+++ EY+ S
Sbjct: 461 KYHPSQYLYFCSSDVPERGPQVGLVSQLSVLSSITNILTSEYLDLEKKICEYIRSYYKDD 520
Query: 507 IEVRRPSPELWRVYLNGVIIGTIEDGKA--LVERIKKDRRSGKISDI-INVAYYED-VRE 562
I + + + ++ ++ V ++ +R G ++ + + D + E
Sbjct: 521 ISYFETG---FPITIENALVASLNPNMICDFVTDFRRRKRMGFFGNLEVGITLVRDHMNE 577
Query: 563 VYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRM--GVIEYLDAEEEEN 620
+ +N GR+ RP ++V+NG+ + + + +SD+ + VIE +D E+
Sbjct: 578 IRINIGAGRLVRPFLVVDNGELMMDVCPELESRLDDMTFSDIQKEFPHVIEMVDIEQFTF 637
Query: 621 AYVA----MWPWEVTEEHTHLEL--MPAAIL-GLPASLIPYPEHNAAPRNTYGAGMAKQS 673
+ V + +E +L PA G AS + HN+ PR G AKQ+
Sbjct: 638 SNVCESVQKFRMMSKDERKQYDLCDFPAEFRDGYVASSLVGINHNSGPRAILGCAQAKQA 697
Query: 674 LGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMED 733
+ ++ R ++D HL+ YP+ P+V S+ ++ GQ+ +A+++Y G N ED
Sbjct: 698 ISCLSSDIRNKIDNGIHLM-YPERPIVISKALETSKIAANCFGQHVTIALMSYKGINQED 756
Query: 734 AIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDE 791
III K I+RG + ++ E IP ++ Y L+
Sbjct: 757 GIIIKKQFIQRGGLDIVTAKKHQVE-------------IPLENFNNKERDRSNAYSKLES 803
Query: 792 DGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIIT 851
+GL+ + +E D + R R LE+ A Q + S + V++V +
Sbjct: 804 NGLVRLNAFLESGDAM-ARNISSRTLEDDF--ARDNQISFDVSEKYTDMYKSRVERVQV- 859
Query: 852 ETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPH 911
E D K+ +T+++ R P +GDKF +R QKG + + + ++P+ E+GI PD+I+N
Sbjct: 860 ELTDKVKVRVLTMKERR-PILGDKFTTRTSQKGTVAYVADETELPYDENGITPDVIINST 918
Query: 912 GIPSRMTVGQLLEAIGGKVAALKGRRVDG----TAFIGEPEEKLRKEL------------ 955
I SR T+ L+E I + K G F E + +
Sbjct: 919 SIFSRKTISMLIEVILTAAYSAKPYNNKGENRPVCFPSSNETSIDTYMQFAKQCYEHSNP 978
Query: 956 ----EELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLT 1011
EEL K +I+YD T K + + +F G IYY RL H+ DK R RG L
Sbjct: 979 KLSDEELSDKIFCEKILYDPETDKPYASKVFFGPIYYLRLRHLTQDKATVRCRGKKTKLI 1038
Query: 1012 KQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLE-ESDKTEVWVCENCGHIALEDK 1070
+Q EGR R GG++FGEMERD L+ HGAA + E L + E D +V+VCENCG IA + K
Sbjct: 1039 RQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQDVYVCENCGDIAAQIK 1098
Query: 1071 RRHK-VYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
+ + C ++K++ ++ K+ L ++ A ++ KL+ R
Sbjct: 1099 GINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNARGVKVKLDFERR 1145
>gi|9634529 TA25R [Vaccinia virus (strain Tian Tan)] >gi|6969808|gb|AAF34020.1|
(AF095689) TA25R [Vaccinia virus (strain Tian Tan)]
Length = 1164
Score = 239 bits (603), Expect = 2e-61
Identities = 238/947 (25%), Positives = 414/947 (43%), Gaps = 97/947 (10%)
Query: 223 VKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPG- 281
V ++ R+L + ++V V + D+ + ++ T YI LV
Sbjct: 243 VSLEFIRRSLSYDMPPEVVYLVN-------AIIDSAKRITESITDFNIDTYINDLVEAEH 295
Query: 282 --QAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDH 339
Q + + +Y + +N LPH+ +P+ K +Y+ + K + D+D
Sbjct: 296 IKQKSQLTINEFKYEMLHNFLPHMNYTPDQL--KGFYMISLLRKFLYCIYHTSRYPDRDS 353
Query: 340 YANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDV 399
R+ G + L + +I+ + ++ RG V NIH +
Sbjct: 354 MVCHRILTYGKYFETLAHDELENYIGNIRNDIMNNHKNRGTYAV--NIHV---------L 402
Query: 400 LTERIEHALATGAWPGGRTGVSQLLDRTN----YVSTLSHLRRVTSPLDREQ--PHFEAR 453
T + HA ++ G+ S RT+ ++ +S R V D+ + F R
Sbjct: 403 TTPGLNHAFSSLL--SGKFKKSDGSYRTHPHYSWMQNISIPRSVGFYPDQVKISKMFSVR 460
Query: 454 DLHGTHWGRICPTETPE-GPNCGLVKNLALMAQITTAVP------EEEVKEYLMSLGIVP 506
H + + C ++ PE GP GLV L++++ IT + E+++ EY+ S
Sbjct: 461 KYHPSQYLYFCSSDVPERGPQVGLVSQLSVLSSITNILTSEYLDLEKKICEYIRSYYKDD 520
Query: 507 IEVRRPSPELWRVYLNGVIIGTIEDGKA--LVERIKKDRRSGKISDI-INVAYYED-VRE 562
I + + + ++ ++ V ++ +R G ++ + + D + E
Sbjct: 521 ISYFETG---FPITIENALVASLNPNMICDFVTDFRRRKRMGFFGNLEVGITLVRDHMNE 577
Query: 563 VYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRM--GVIEYLDAEEEEN 620
+ +N GR+ RP ++V+NG+ + + + +SD+ + VIE +D E+
Sbjct: 578 IRINIGAGRLVRPFLVVDNGELMMDACPELESRLDDMTFSDIQKEFPHVIEMVDIEQFTF 637
Query: 621 AYVA----MWPWEVTEEHTHLEL--MPAAIL-GLPASLIPYPEHNAAPRNTYGAGMAKQS 673
+ V + +E +L PA G AS + HN+ PR G AKQ+
Sbjct: 638 SNVCESVQKFRMMSKDERKQYDLCDFPAEFRDGYVASSLVGINHNSGPRAILGCAQAKQA 697
Query: 674 LGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMED 733
+ ++ R ++D HL+ YP+ P+V S+ ++ GQ+ +A+++Y G N ED
Sbjct: 698 ISCLSSDIRNKIDNGIHLM-YPERPIVISKALETSKIAANCFGQHVTIALMSYKGINQED 756
Query: 734 AIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDE 791
III K I+RG + ++ E IP ++ Y L+
Sbjct: 757 GIIIKKQFIQRGGLDIVTAKKHQVE-------------IPLENFNNKERDRSNAYSKLES 803
Query: 792 DGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIIT 851
+GL+ + +E D I R R LE+ A Q + + V++V +
Sbjct: 804 NGLVRLNAFLESGDA-IARNISSRTLEDDF--ARDNQISFDVPEKYTDMYKSRVERVQV- 859
Query: 852 ETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPH 911
E D K+ +T+++ R P +GDKF +R QKG + + + ++P+ E+GI PD+I+N
Sbjct: 860 ELTDKVKVRVLTMKERR-PILGDKFTTRTSQKGTVAYVADETELPYDENGITPDVIINST 918
Query: 912 GIPSRMTVGQLLEAIGGKVAALKGRRVDG----TAFIGEPEEKLRKEL------------ 955
I SR T+ L+E I + K G F E + +
Sbjct: 919 SIFSRKTISMLIEVILTAAYSAKPYNNKGENRPVCFPSSNETSIDTYMQFAKQCYEHSNP 978
Query: 956 ----EELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLT 1011
EEL K +I+YD T K + + +F G IYY RL H+ DK R RG L
Sbjct: 979 KLSDEELSDKIFCEKILYDPETDKPYASKVFFGPIYYLRLRHLTQDKATVRCRGKKTKLI 1038
Query: 1012 KQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLE-ESDKTEVWVCENCGHIALEDK 1070
+Q EGR R GG++FGEMERD L+ HGAA + E L + E D +V+VCENCG IA + K
Sbjct: 1039 RQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQDVYVCENCGDIAAQIK 1098
Query: 1071 RRHK-VYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
+ + C ++K++ ++ K+ L ++ A ++ KL+ R
Sbjct: 1099 GINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNARGVKVKLDFERR 1145
>gi|9633323 A25R protein [variola minor virus] >gi|7514172|pir||F72166 A25R
protein - variola minor virus (strain Garcia-1966)
>gi|1143635|emb|CAA53897.1| (X76268) ORF15R [Variola
virus] >gi|5830689|emb|CAB54728.1| (Y16780) A25R protein
[variola minor virus]
Length = 1164
Score = 238 bits (601), Expect = 3e-61
Identities = 237/947 (25%), Positives = 415/947 (43%), Gaps = 97/947 (10%)
Query: 223 VKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPG- 281
V ++ R+L + ++V V + D+ + ++ T YI LV
Sbjct: 243 VSLGFIRRSLSYDMPPEVVYLVN-------AIIDSAKRLTESITDFNIDTYINDLVEAEH 295
Query: 282 --QAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDH 339
Q + + +Y + +N LPH+ +P+ K +Y+ + K + D+D
Sbjct: 296 IKQKSQLTINEFKYEMLHNFLPHMNYTPDQL--KGFYMISLLRKFLYCIYYTSRYPDRDS 353
Query: 340 YANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDV 399
R+ G + L + +I+ + ++ RG V NIH +
Sbjct: 354 MVCHRILTYGKYFETLAHDELENYIGNIRNDIMNNHKNRGTYAV--NIHV---------L 402
Query: 400 LTERIEHALATGAWPGGRTGVSQLLDRTN----YVSTLSHLRRVTSPLDREQ--PHFEAR 453
T + HA ++ G+ S RT+ ++ +S R V D+ + F R
Sbjct: 403 TTPGLNHAFSSLL--SGKFKKSDGSYRTHPHYSWMQNISIPRSVGFYPDQVKISKMFSVR 460
Query: 454 DLHGTHWGRICPTETPE-GPNCGLVKNLALMAQITTAVP------EEEVKEYLMSLGIVP 506
H + + C ++ PE GP GLV L++++ IT + E+++ EY+ S
Sbjct: 461 KYHPSQYLYFCSSDVPERGPQVGLVSQLSVLSSITNILTSEYLDLEKKICEYIRSYYKDD 520
Query: 507 IEVRRPSPELWRVYLNGVIIGTIEDGKA--LVERIKKDRRSGKISDI-INVAYYED-VRE 562
I + + + ++ ++ V ++ +R G ++ + + D + E
Sbjct: 521 ISYFETG---FPITIENALVASLNPNMICDFVTDFRRRKRMGFFGNLEVGITLVRDHMNE 577
Query: 563 VYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRM--GVIEYLDAEEEEN 620
+ +N GR+ RP ++V+NG+ + + + +SD+ + VIE +D E+
Sbjct: 578 IRINIGAGRLVRPFLVVDNGELMMDVCPELESRLDDMTFSDIQKEFPHVIEMVDIEQFTF 637
Query: 621 AYVA----MWPWEVTEEHTHLEL--MPAAIL-GLPASLIPYPEHNAAPRNTYGAGMAKQS 673
+ V + +E +L PA G AS + HN+ PR G AKQ+
Sbjct: 638 SNVCESVQKFRMMSKDERKQYDLCDFPAEFRDGYVASSLVGINHNSGPRAILGCAQAKQA 697
Query: 674 LGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMED 733
+ ++ R ++D HL+ YP+ P+V S+ ++ GQ+ +A+++Y G N ED
Sbjct: 698 ISCLSSDIRNKIDNGIHLM-YPERPIVISKALETSKIAANCFGQHVTIALMSYKGINQED 756
Query: 734 AIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY--YRHLDE 791
III K I+RG + ++ E IP ++ Y L+
Sbjct: 757 GIIIKKQFIQRGGLDIVTAKKHQVE-------------IPLENFNNKERDRSNAYSKLES 803
Query: 792 DGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIIT 851
+GL+ + +E D + R R LE+ A Q + S + V++V +
Sbjct: 804 NGLVRLNAFLESGDAM-ARNISSRTLEDDF--ARDNQISFDVSEKYTDMYKSRVERVQV- 859
Query: 852 ETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPH 911
E D K+ +T+++ R P +GDKF +R QKG + I + ++P+ E+GI PD+I+N
Sbjct: 860 ELTDKVKVRVLTMKERR-PILGDKFTTRTSQKGTVAYIADETELPYDENGITPDVIINST 918
Query: 912 GIPSRMTVGQLLEAIGGKVAALKGRRVDG----TAFIGEPEEKLRKELE----------- 956
I SR T+ L+E I + K G F E + ++
Sbjct: 919 SIFSRKTISMLIEVILTAAYSAKPYNNKGENRPVCFPSSNETSIDTYMQFAKQCYEHSNP 978
Query: 957 -----ELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLT 1011
EL K +I+YD T K + + +F G IYY RL H+ DK R RG L
Sbjct: 979 KLTEKELSDKIFCEKILYDPETDKPYASKVFFGPIYYLRLRHLTQDKATVRCRGKKTKLI 1038
Query: 1012 KQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLE-ESDKTEVWVCENCGHIALEDK 1070
+Q EGR R GG++FGEMERD L+ HGAA + E L + E D +V++CENCG IA + K
Sbjct: 1039 RQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQDVYICENCGDIAAQIK 1098
Query: 1071 RRHK-VYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
+ + C ++K++ ++ K+ L ++ A ++ KL+ R
Sbjct: 1099 SINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNARGVKVKLDFERR 1145
>sp|P16716|RPO2_CAPVK DNA-DIRECTED RNA POLYMERASE 132 KD POLYPEPTIDE (HM1 PROTEIN)
>gi|66992|pir||RNVZCA DNA-directed RNA polymerase (EC
2.7.7.6) 132K polypeptide - sheep pox virus (isolate
Kenya sheep-1, KS-1) (fragment) >gi|323259|gb|AAC32897.1|
(M30039) ORF HM1 [sheeppox virus]
Length = 919
Score = 233 bits (587), Expect = 1e-59
Identities = 244/951 (25%), Positives = 413/951 (42%), Gaps = 112/951 (11%)
Query: 227 YVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQAREY 286
++ +L + +I V E + L + D DI T YI L+ EY
Sbjct: 2 FIKHSLSYDMPSEISYLVNTIIESTKELIKTINDF-DIDT------YINDLIIS----EY 50
Query: 287 RLKRAEYVID-------NNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDH 339
++++ +++ NN LPH+ +P K +Y+ + K I D+D
Sbjct: 51 NKQKSQLILEEFKHEMINNFLPHMNDTPNQL--KGFYIMSLLRKFIYCIYYTSRYPDRDS 108
Query: 340 YANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDV 399
R+ G + L + +I+ + ++ RG V NIH +
Sbjct: 109 MVCHRVLTYGKYFEILAHDELENYIGNIRTDIINNHKNRGTYSV--NIHV---------L 157
Query: 400 LTERIEHALATGAWPGG---RTGVSQLLDRTNYVSTLSHLRRVTSPLDREQ--PHFEARD 454
T HA + G G G + +++ +S R V D+ + F R
Sbjct: 158 TTPGFNHAFS-GLLSGKFKKTDGSYRTHSHYSWMQNISIPRSVGYYPDQVKISKMFSVRK 216
Query: 455 LHGTHWGRICPTETPE-GPNCGLVKNLALMAQITTAVP------EEEVKEYLMSLGIVPI 507
H + + CP++ PE GP GLV L+++ IT E+++ Y+ S I
Sbjct: 217 YHPSQYAYFCPSDVPERGPQVGLVSQLSVLTSITNICTNEYLELEKKICNYIRSYNHNDI 276
Query: 508 EVRRPSPELWRVYLNGVIIGTIEDGKA--LVERIKKDRRSGKISDI-INVAYYED-VREV 563
+ + L +I + V ++ +R ++ I + D + E+
Sbjct: 277 SYFETG---YYITLENSLIACLNPNLVDDFVIDFRRKKRMNYFGNLEIGITLVNDHMNEI 333
Query: 564 YVNSDDGRVRRPLIIVENGKPKLTKEHVQA-IKEGRLKWSDLVRM--GVIEYLDAEEE-- 618
+N GR+ RP ++++NG + + + K + +SD+ + VIE +D E+
Sbjct: 334 RINIGGGRLIRPFLVIDNGNLIMDEIFSELEFKIDDMTFSDIQKEFPHVIEIVDIEQFTF 393
Query: 619 ENAYVAMWPWEVTEEHT----HLELMPAAIL-GLPASLIPYPEHNAAPRNTYGAGMAKQS 673
N ++ + + HL PA G AS + HN+ PR G KQ+
Sbjct: 394 SNVCESVQKFRALPKSEKCKYHLCDFPAEFKDGYVASSLVGINHNSGPRAILGCAQRKQA 453
Query: 674 LGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMED 733
+ ++ R ++D HL+ YP+ P+V S+ ++ GQ+ +A+++Y G N ED
Sbjct: 454 ISCLSSDIRNKIDNGIHLI-YPERPIVISKALETSKIAVNCFGQHVTIALMSYKGINQED 512
Query: 734 AIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDG 793
III K +ERG + ++ E L +K + S Y L+ +G
Sbjct: 513 GIIIKKQFVERGGLDIITAKKHQVEIP--LENFNNKERVKSTA---------YSKLESNG 561
Query: 794 LIFPESKVEGKDVLI----GRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVI 849
L+ + +E D + RT F+++ + + + +R R V++V
Sbjct: 562 LVRLNAFLESGDAIARNISSRTLEDDFVQDNQI-SFDISDRYTDMYQSR------VERVQ 614
Query: 850 ITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVN 909
+ T D K+ +T+++ R P +GDKF SR QKG + I + ++P+ E+GI PD+I+N
Sbjct: 615 VDLT-DKVKVRVLTMKERR-PVLGDKFTSRTSQKGTVAYIADETELPYDENGIKPDVIIN 672
Query: 910 PHGIPSRMTVGQLLEAIGGKVAALKGRRVDG----TAFIGEPEEKLRKELEELGFKHTGR 965
I SR TV L+E I + DG F E + L+ H R
Sbjct: 673 STSIFSRKTVSMLIEVILTSAYEVSPYNNDGQNRPICFPSSNETSIDTYLDFAKRCHRDR 732
Query: 966 ----------------EIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
I+YD T K + + IF+G IYY RL H+ DK R RG
Sbjct: 733 YPSLSDDDINDKMFCDTILYDPETDKPYSSKIFMGPIYYLRLRHLTQDKATVRCRGKKTK 792
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLE-ESDKTEVWVCENCGHIALE 1068
L +Q EGR R GG++FGEMERD L+ HGAA + E L + E D +V+VCENCG I +
Sbjct: 793 LIRQANEGRRRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQDVYVCENCGDITAQ 852
Query: 1069 DKRRHKVYCPVCGEEER---ISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
+ +KV C C ++ ++KV+ ++ K+ + ++ A ++ KL +R
Sbjct: 853 -IQGNKV-CIRCSKQNLSTILTKVDTTHVAKVFITQMNARGVKVKLEFEKR 901
>gi|9633750 m114R [Myxoma virus] >gi|6523969|gb|AAF15002.1|AF170726_118
(AF170726) m114R [Myxoma virus]
Length = 1155
Score = 231 bits (583), Expect = 3e-59
Identities = 241/946 (25%), Positives = 410/946 (42%), Gaps = 108/946 (11%)
Query: 222 PVKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPG 281
P + +Y++ A+ +E K VD++ FD +D+ ++
Sbjct: 249 PDEIIYLVNAV-IESTKHFVDSINE--------FDIDTYINDLFIEEHTK---------- 289
Query: 282 QAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYA 341
Q + L ++ + N LPH+ +P K +Y+ + K I D+D
Sbjct: 290 QKSQVSLDEFKHEMLYNFLPHMTNTPNQL--KGFYIISLLRKFIYCIYYTSRYPDRDSMI 347
Query: 342 NKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLT 401
R+ G + L + +I+ + ++ RG V NIH + T
Sbjct: 348 CHRVLTYGKYFEILAHDELENYIGNIKTDIINNHKNRGTHSV--NIHV---------LTT 396
Query: 402 ERIEHALATGAWPGG---RTGVSQLLDRTNYVSTLSHLRRVTSPLDREQ--PHFEARDLH 456
HA + G G G + +++ +S R V ++ + F R H
Sbjct: 397 PGFNHAFS-GLLSGKFKKTDGSYRTHPHYSWMQNISIPRSVGFYPEQVKISKMFSVRKYH 455
Query: 457 GTHWGRICPTETPE-GPNCGLVKNLALMAQITTAVPEE------EVKEYLMSLGIVPIEV 509
+ + CP++ PE G G+V L+++ +T E ++ EY+ S + I
Sbjct: 456 PSQYAYFCPSDVPERGNQVGMVSQLSVLTSVTNICTNEYLDLERKICEYVRSYDVKDISY 515
Query: 510 RRPSPELWRVYLNGVIIGTIEDG--KALVERIKKDRRSGKISDI-INVAYYED-VREVYV 565
+ V L +I ++ A V ++ +R G + + I + + D + E+ +
Sbjct: 516 FETG---YYVTLENALIASLNPDLTHAFVRDFRRKKREGYFNSLEIGITHVADHMNEIRI 572
Query: 566 NSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRM--GVIEYLDAEE------ 617
N GR+ RP +++E+G+ + A K + +SD+ R VIE +D E+
Sbjct: 573 NISSGRLIRPFLVIESGELIMDTVPELADKLDDMTFSDVQREYPHVIEMVDIEQFTFSNV 632
Query: 618 -EENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGL 676
E P ++ + G AS + HN+ PR G AKQ++
Sbjct: 633 CESVQKFRSLPKSEKVKYQLCDFPSEFRDGYVASSLVGINHNSGPRAILGCAQAKQAISC 692
Query: 677 GWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAII 736
++ R ++D HLL YP+ P+V S+ ++ GQ+ +A+++Y G N ED II
Sbjct: 693 LSSDIRNKIDNGIHLL-YPERPIVISKALETSKIAVNCFGQHVTIALMSYKGINQEDGII 751
Query: 737 INKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIF 796
+ K IERG + ++ E L +K + S Y L+ +GL+
Sbjct: 752 VKKQFIERGGLDIITAKKHQVEIP--LENFNNKERVKSTA---------YSKLESNGLVR 800
Query: 797 PESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSE--RGVVDKVIITETG 854
+ +E D I R R LE+ + + +A R ++ + V++V + T
Sbjct: 801 LNAFLESGDA-IARNISSRTLEDDFVQ----DNQISFDIADRYTDMYKSRVERVQVDLT- 854
Query: 855 DGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIP 914
D + +T+++ R P +GDKF SR QKG + I + ++P+ E+GI PD+I+N I
Sbjct: 855 DKVXVRVLTMKERR-PILGDKFTSRTSQKGTVAYIADENELPYDENGIKPDVIINSTSIF 913
Query: 915 SRMTVGQLLEAIGGKVAALKGRRVDG----TAFIGEPEEKLRKELEELGFKHTGR----- 965
SR TV L+E I A K DG F E + L HT
Sbjct: 914 SRKTVSMLIEVILTAAYASKPYNNDGKNRPICFPSSNETTIDTYLNFAKQCHTHTYPDAS 973
Query: 966 -----------EIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQP 1014
+ +YD T + A +F+G IYY RL H+ DK R RG L +Q
Sbjct: 974 DEVINDKIFCDKTLYDPETDTPYTAKVFMGPIYYLRLRHLTQDKATVRCRGKKTKLIRQA 1033
Query: 1015 TEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLE-ESDKTEVWVCENCGHIALEDKRRH 1073
EGR R GG++FGEMERD L+ HGAA + E L + E D +V+VCENCG I + + +
Sbjct: 1034 NEGRRRXGGIKFGEMERDCLIAHGAANTITEILKDSEEDYQDVYVCENCGDIT-ANIQGN 1092
Query: 1074 KVYCPVCGEEER---ISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
K+ C C ++ ++KV+ + K+ + ++ A ++ K+ +R
Sbjct: 1093 KI-CIRCSKQNLSTILTKVDTXHVSKVFITQMNARGVKVKMEFEKR 1137
>gi|9629061 MC129R [Molluscum contagiosum virus subtype 1]
>gi|7434756|pir||T30731 probable DNA-directed RNA
polymerase (EC 2.7.7.6) 133K chain - Molluscum
contagiosum virus 1 >gi|1492072|gb|AAC55257.1| (U60315)
MC129R [Molluscum contagiosum virus subtype 1]
Length = 1165
Score = 228 bits (575), Expect = 3e-58
Identities = 231/906 (25%), Positives = 403/906 (43%), Gaps = 99/906 (10%)
Query: 269 EALEYIGKLVAPGQAREY---RLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVI 325
+ EY+ +L+ A++ +L+ Y + N LPH+ S K YL + K +
Sbjct: 282 DVAEYVAELIEAEHAKQRSPAKLEDFRYDMLQNFLPHMLHSGNQL--KGLYLLSLLRKFL 339
Query: 326 ELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFG 385
+ D+D R+ G + L + +I+ + ++ RG V
Sbjct: 340 FCTFFPSRYPDRDSMICHRILTYGKYFETLANDELENYINNIKTDLFNNHKNRGTCTV-- 397
Query: 386 NIHRFIRNSIRPDVLTERIEHALATGAWPGG---RTGVSQLLDRTNYVSTLSHLRRVTSP 442
NIH + T HA + G G G + +++ +S R V
Sbjct: 398 NIHV---------LTTPGFNHAFS-GLLSGKFKKTDGSYRTHPHYSWMQNISIPRSVGYY 447
Query: 443 LDREQ--PHFEARDLHGTHWGRICPTETPE-GPNCGLVKNLALMAQITTA------VPEE 493
D+ + F R H + + CP++ PE GP GLV L++++ +T E+
Sbjct: 448 PDQVKISKMFSVRKYHPSQYVYFCPSDVPERGPQVGLVSQLSVLSYVTNIRTDEYLALEQ 507
Query: 494 EVKEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDI-- 551
++EY+ S V I + + + ++ + LV+ D ++ K +
Sbjct: 508 RIREYVYSYPQVNISFFETG---FPLTIENALVAVLNPH--LVDDFVADFKTRKRLNFFE 562
Query: 552 ---INVAYYED-VREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLK---WSDL 604
+ + +D + EV VN GR+ RP ++V G L + V A + R++ +SD+
Sbjct: 563 NMELGITLVKDHMNEVRVNIGSGRLVRPFLVVHQGV--LVMDTVGAELDARMETMTFSDI 620
Query: 605 VRM--GVIEYLDAEE-------EENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYP 655
R V+E +D E+ E A P + +++ G AS +
Sbjct: 621 QREYPHVLELVDVEQFTFSNVCESAARFRALPEAERRLYDYVDFPAEFRDGYVASTLVGV 680
Query: 656 EHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPA 715
HN+ PR G AKQ++ ++ R ++D HLL +P+ P+V S+ ++
Sbjct: 681 NHNSGPRAILGCAQAKQAISCLSSDLRNKIDNGIHLL-FPERPIVLSKAVETSKIAVNCF 739
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSP 775
GQ+ ++A+++Y G N ED II+ + ++RG + ++ E L +K + S
Sbjct: 740 GQHVLIALMSYKGINQEDGIILKREFVQRGGLDIVTAKKHQVEIP--LENFNNKERVKST 797
Query: 776 TVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQ-ERRETS 834
Y LD +GL+ + +E D + R R LE+ + + + E
Sbjct: 798 A---------YSKLDSNGLVKLNAFLEPGDA-VARNISSRTLEDEFVDDNQISFDIAERY 847
Query: 835 VAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQED 894
+ PS V++V + T D K+ +T+++ R P +GDKF SR QKG + + + +
Sbjct: 848 TDMYPSR---VERVQVDLT-DKVKVRVLTIKERR-PVLGDKFTSRTSQKGTVAYLADEAE 902
Query: 895 MPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDG-------------- 940
+P+ + G+ PD+IVN I SR T+ L+E + A K
Sbjct: 903 LPYDDDGLTPDIIVNSTSIYSRKTISMLVEIMLTAAYAAKPYNNQDQNRPICFPSSNETS 962
Query: 941 ----TAFIGEPEEKLRKELE--ELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHM 994
AF + E + EL EL + + +YD T + + A +F+G IYY RL H+
Sbjct: 963 IETYLAFARKCYESVFPELRETELQARLFCEKTLYDPETDEPYAAAVFMGPIYYLRLRHL 1022
Query: 995 VADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLE-ESDK 1053
DK R RG L +Q EGR R GG++FGEMERD L+ HGAA + E L + E D
Sbjct: 1023 TQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIAHGAANTITEILKDSEEDS 1082
Query: 1054 TEVWVCENCGHIALEDKRRHKVYCPVCGE---EERISKVEMSYAFKLLLDELKAMVIRPK 1110
+V VCE+CG IA ++ + ++C C + +++V+ ++ K+ L ++ A ++ +
Sbjct: 1083 QDVHVCEHCGDIA--TRKNNVLFCIRCTKLNLSPVLTRVDTTHVSKVFLTQMNARGVKVR 1140
Query: 1111 LNLTER 1116
L ++
Sbjct: 1141 LEFEKQ 1146
>gi|9634859 ORF FPV189 RNA polymerase subunit, RPO132 [Fowlpox virus]
>gi|7271687|gb|AAF44533.1|AF198100_180 (AF198100) ORF
FPV189 RNA polymerase subunit, RPO132 [Fowlpox virus]
Length = 1161
Score = 227 bits (573), Expect = 5e-58
Identities = 237/880 (26%), Positives = 398/880 (44%), Gaps = 104/880 (11%)
Query: 293 YVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLL 352
Y + N LPH+ V+ D+++ Y LG++ K I D+D R+ G
Sbjct: 300 YDLMYNFLPHM-VNSSDQLKGFYLLGLLR-KFIYCIYHTSRYPDRDSMVCHRVLTYGRYF 357
Query: 353 KDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGA 412
+ L + +I+ +T +++ +G V +IH + T HA + G
Sbjct: 358 EILANDELENYITNIKNDITNSHKNKGVCNV--SIHV---------LTTPGFNHAFS-GL 405
Query: 413 WPGG---RTGVSQLLDRTNYVSTLSHLRRVTSPLDREQ--PHFEARDLHGTHWGRICPTE 467
G G + +++ +S R V D+ + F R H + + CP++
Sbjct: 406 LSGKFKKTDGSYRTHPHYSWMQNISIPRSVGYYPDQVKISKMFSVRKYHPSQYAFFCPSD 465
Query: 468 TPE-GPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPSPELWRVYLNGVII 526
PE GP GL+ L+++ T+V EY+ + + + G II
Sbjct: 466 VPERGPQVGLISQLSVL----TSVSNIRTTEYIDLKNAIMKYIYTYDKNDISYFQTGHII 521
Query: 527 GTIED------GKALVERIKKDRRSGKISDI-----INVAYYED-VREVYVNSDDGRVRR 574
TIE+ LV++ D + K + I ++ +D + E+ +N GR+ R
Sbjct: 522 -TIENDLVAAINPELVDKFVDDFKFRKRVNYFDNLEIGISNVKDHMNEIRINIGSGRLIR 580
Query: 575 PLIIVENGKPKLTKEHVQAIKEGRLK---WSDLVRM--GVIEYLDAEEE--ENAYVAMWP 627
P ++V G+ L + + E R+ +SD+ + VIE LD E+ N ++
Sbjct: 581 PFLVVYKGE--LVMDTIGEELEKRIDTITFSDIQKEYPHVIEMLDLEQFVFSNVCESVSK 638
Query: 628 W-EVTEE----HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFR 682
+ E+++E + + + G AS + HN+ PR G AKQ++ ++ R
Sbjct: 639 FRELSDEDKKLYDYCDFPNEFRDGYVASTLVGINHNSGPRAILGCAQAKQAISCLSSDLR 698
Query: 683 IRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASI 742
++D HLL YP+ P+V S+ + GQ+ +VA+++Y G N ED I++ + I
Sbjct: 699 NKIDNGIHLL-YPERPIVLSKATETSKIAINCFGQHVLVALMSYKGMNQEDGIVVKREFI 757
Query: 743 ERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVE 802
ERG + ++ E I + R Y LD +GL+ + +E
Sbjct: 758 ERGGLDIVTAKKHQVE-----------IPIENFKNRERINSTAYSKLDINGLVRLNAFLE 806
Query: 803 GKDVLI----GRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGTK 858
D + RT F+ + + + + E+ T + + ER VD D K
Sbjct: 807 PGDAIAKNISSRTLDDDFVADNQI-SFDISEKY-TDMYMSRVERVQVDLT------DKVK 858
Query: 859 LVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMT 918
+ +T+++ R P +GDKF SR QKG I I + ++P+ ++G+ PD+I+N I SR T
Sbjct: 859 VRVLTMKERR-PIMGDKFTSRTSQKGTIAYIASESELPYDKNGVTPDIIINSTSIYSRKT 917
Query: 919 VGQLLEAIGGKVAALKGRRVDGT----AFIGEPEEKLRKELE----------------EL 958
+ L+E I ++K +G F E + +E EL
Sbjct: 918 ISMLIEMILTSAYSVKPYNNNGKNRPICFPSSNETDIEYYIEFARKCYQSAIPDLDKDEL 977
Query: 959 GFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGR 1018
+ I+YD T K ++ +F+G +YY RL H+ DK R RG L +Q EGR
Sbjct: 978 ENEVYCESILYDPETDKPYKTKVFMGPLYYLRLRHLTQDKATVRCRGKKTKLIRQANEGR 1037
Query: 1019 AREGGLRFGEMERDVLVGHGAAMLLIERLLE-ESDKTEVWVCENCGHIALEDKRRHKVYC 1077
R GG++FGEMERD L+ HGAA + E L + E D +V+VCENCG IA K+ + VYC
Sbjct: 1038 KRGGGIKFGEMERDCLIAHGAANTITEILKDSEEDYQDVYVCENCGDIA--TKKNNNVYC 1095
Query: 1078 PVCGEEER---ISKVEMSYAFKLLLDELKAMVIRPKLNLT 1114
C + ++K++ ++ K+ L ++ A I K+NLT
Sbjct: 1096 IRCTKLNLYTVLTKIDTTHVSKVFLTQMNARGI--KINLT 1133
>gi|9633924 gp114R [Rabbit fibroma virus] >gi|6578643|gb|AAF17997.1|AF170722_115
(AF170722) gp114R [Rabbit fibroma virus]
Length = 1155
Score = 226 bits (571), Expect = 9e-58
Identities = 226/870 (25%), Positives = 382/870 (42%), Gaps = 89/870 (10%)
Query: 298 NLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFR 357
N LPH+ +P K +Y+ + K I D+D R+ G + L
Sbjct: 306 NFLPHMTNTPNQL--KGFYIISLLRKFIYCIYYTSRYPDRDSMICHRVLTYGKYFEILAH 363
Query: 358 VAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGG- 416
+ +I+ + ++ RG V NIH + T HA + G G
Sbjct: 364 DELENYIGNIKTDIINNHKNRGTHSV--NIHV---------LTTPGFNHAFS-GLLSGKF 411
Query: 417 --RTGVSQLLDRTNYVSTLSHLRRVTSPLDREQ--PHFEARDLHGTHWGRICPTETPE-G 471
G + +++ +S R V ++ + F R H + + CP++ PE G
Sbjct: 412 KKTDGSYRTHPHYSWMQNISIPRSVGFYPEQVKISKMFSVRKYHPSQYAYFCPSDVPERG 471
Query: 472 PNCGLVKNLALMAQITTAVPEE------EVKEYLMSLGIVPIEVRRPSPELWRVYLNGVI 525
G+V L+++ +T E ++ EY+ S + I + + L +
Sbjct: 472 NQVGMVSQLSVLTSVTNICTNEYLDLERKICEYVRSYDVKDISYFETG---YYITLENAL 528
Query: 526 IGTIEDG--KALVERIKKDRRSGKISDI-INVAYYED-VREVYVNSDDGRVRRPLIIVEN 581
I ++ V ++ +R G +++ I + + D + E+ +N GR+ RP +++E+
Sbjct: 529 IASLNPDITHTFVRDFRRKKREGYFNNLEIGITHVMDHMNEIRINIASGRLIRPFLVIES 588
Query: 582 GKPKLTKEHVQAIKEGRLKWSDLVRM--GVIEYLDAEE-------EENAYVAMWPWEVTE 632
G+ + K + +SD+ + VIE +D E+ E P
Sbjct: 589 GELIMDTVPDLVDKLDDMTFSDVQKEYPHVIEMVDIEQFTFSNVCESVQKFRSLPKSEKV 648
Query: 633 EHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLL 692
++ + G AS + HN+ PR G AKQ++ ++ R ++D HLL
Sbjct: 649 KYQLCDFPSEFRDGYVASSLVGINHNSGPRAILGCAQAKQAISCLSSDIRNKIDNGIHLL 708
Query: 693 HYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFF 752
YP+ P+V S+ ++ GQ+ +A+++Y G N ED III K IERG
Sbjct: 709 -YPERPIVISKALETSKIAVNCFGQHVTIALMSYKGINQEDGIIIKKQFIERGGLDIITA 767
Query: 753 RTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTS 812
+ ++ E L +K + S Y L+ +GL+ + +E D I R
Sbjct: 768 KKHQVEIP--LENFNNKERVKSTA---------YSKLESNGLVRLNAFLESGDA-IARNI 815
Query: 813 PPRFLEERGLGAVSLQERRETSVAVRPSE--RGVVDKVIITETGDGTKLVKVTVRDLRIP 870
R LE+ + + +A R ++ + V++V + T D K+ +T+++ R P
Sbjct: 816 SSRTLEDDFVQ----DNQISFDIADRYTDMYKSRVERVQVDLT-DKVKVRVLTMKERR-P 869
Query: 871 EIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKV 930
+GDKF SR QKG + I + ++P+ E GI PD+++N I SR TV L+E I
Sbjct: 870 ILGDKFTSRTSQKGTVAYIADENELPYDEDGIKPDVVINSTSIFSRKTVSMLIEVILTAA 929
Query: 931 AALKGRRVDG----TAFIGEPEEKLRKELEELGFKHTG----------------REIMYD 970
A K DG F E + L HT + +YD
Sbjct: 930 YASKPYNNDGKNRPICFPSSNETTIDTYLNFAKQCHTHTHPYASEDIIDDKIFCNKKLYD 989
Query: 971 GITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEME 1030
T + A +F+G IYY RL H+ DK R RG L +Q EGR R GG++FGEME
Sbjct: 990 PETDTPYTAKVFMGPIYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRRRGGGIKFGEME 1049
Query: 1031 RDVLVGHGAAMLLIERLLE-ESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEER---I 1086
RD L+ HGAA + E L + E D +V+VCENCG I + + +K+ C C ++ +
Sbjct: 1050 RDCLIAHGAANTITEILKDSEEDYQDVYVCENCGDIT-ANIQGNKI-CIRCSKQNLSTIL 1107
Query: 1087 SKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
+KV+ ++ K+ + ++ A ++ K+ +R
Sbjct: 1108 TKVDTTHVSKVFITQMNARGVKVKMEFEKR 1137
>sp|P47768|RPOB_STAAU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT) >gi|2117910|pir||S59951
DNA-directed RNA polymerase (EC 2.7.7.6) beta chain -
Staphylococcus aureus >gi|677851|emb|CAA45512.1| (X64172)
DNA-directed RNA polymerase beta chain [Staphylococcus
aureus] >gi|1094970|prf||2107219B RNA
polymerase:SUBUNIT=beta [Staphylococcus aureus]
>gi|1096954|prf||2113202B RNA polymerase:SUBUNIT=beta
[Staphylococcus aureus]
Length = 1182
Score = 221 bits (557), Expect = 4e-56
Identities = 146/413 (35%), Positives = 225/413 (54%), Gaps = 39/413 (9%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKK--YLGGQTDKFEIP 773
G+N VV + + GYN EDA+I+++ ++ + S YE+ ++ LG + +IP
Sbjct: 755 GRNVVVGFMTWDGYNYEDAVIMSERLVKDDVYTSIHIEEYESRRQRDTKLGPEEITRDIP 814
Query: 774 SPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLE----ERGLGAV---S 826
+ + E ++LD+ G+++ ++V+ D+L+G+ +P E ER L A+
Sbjct: 815 NVS------ESALKNLDDRGIVYIGAEVKDGDILVGKVTPKGVTELTAEERLLHAIFGEK 868
Query: 827 LQERRETSVAVRPSERGVV--DKVIITETGDGT------KLVKVTVRDLRIPEIGDKFAS 878
+E R+TS+ V G+V KV E GD T +LV+V + R +GDK
Sbjct: 869 AREVRDTSLRVPHGAGGIVLDVKVFNREEGDDTLSPGVNQLVRVYIVQKRKIHVGDKMCG 928
Query: 879 RHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRV 938
RHG KGVI IVP+EDMP+ G D+++NP G+PSRM +GQ+LE G A G V
Sbjct: 929 RHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVLELHLGMAAKNLGIHV 988
Query: 939 DGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADK 998
F G ++ + +EE G G+ ++YDG TG+ F+ I VGV+Y +L HMV DK
Sbjct: 989 ASPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRISVGVMYMLKLAHMVDDK 1048
Query: 999 IHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWV 1058
+HARS GP ++T+QP G+A+ GG RFGEME L +GAA L E L +SD T
Sbjct: 1049 LHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDT---- 1104
Query: 1059 CENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKL 1111
R K Y + + E IS+ + +F++L+ EL+++ + K+
Sbjct: 1105 -----------VGRVKTYEAIV-KGENISRPSVPESFRVLMKELQSLGLDVKV 1145
Score = 89.3 bits (218), Expect = 2e-16
Identities = 53/156 (33%), Positives = 87/156 (54%), Gaps = 21/156 (13%)
Query: 335 DDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNS 394
DD DH N+RLR G+LL++ FR+ S++ + ++ +M+ S
Sbjct: 398 DDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTE----------------S 441
Query: 395 IRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHF 450
I P L I +A+ G + +SQ +D+ N ++ L+H RR+++ L RE+
Sbjct: 442 ITPQQLIN-IRPVIASIKEFFGSSQLSQFMDQANPLAELTHKRRLSALGPGGLTRERAQM 500
Query: 451 EARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQI 486
E RD+H +H+GR+CP ETPEGPN GL+ +L+ A++
Sbjct: 501 EVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARV 536
>pir||T44375 rpoB protein [imported] - Bacillus halodurans
>gi|4512396|dbj|BAA75263.1| (AB017508) rpoB homologue
(identity of 87% to B. subtilis ) [Bacillus halodurans]
>gi|10172738|dbj|BAB03845.1| (AP001507) DNA-directed RNA
polymerase beta subunit [Bacillus halodurans]
Length = 1180
Score = 219 bits (552), Expect = 1e-55
Identities = 148/411 (36%), Positives = 220/411 (53%), Gaps = 37/411 (9%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKY-LGGQTDKFEIPS 774
G+N +V + + GYN EDAII+++ ++ + S YE+E + LG + +IP+
Sbjct: 757 GRNVLVGFMTWEGYNYEDAIILSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPN 816
Query: 775 PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLE----ERGLGAV---SL 827
GE R+LDE G+I ++V+ D+L+G+ +P E ER L A+
Sbjct: 817 V------GEDALRNLDERGIIRVGAEVKDGDILVGKVTPKGVTELTAEERLLHAIFGEKA 870
Query: 828 QERRETSVAVRPSERGVVDKVIITETGDG-------TKLVKVTVRDLRIPEIGDKFASRH 880
+E R+TS+ G+V V I DG +LV+V + R GDK A RH
Sbjct: 871 REVRDTSLRAPHGGDGIVLDVKIFNREDGDELPPGVNQLVRVYIVQKRKIHEGDKMAGRH 930
Query: 881 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDG 940
G KGVI I+P+EDMP+ G D+++NP G+PSRM +GQ+LE G A G V
Sbjct: 931 GNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARRLGLHVAS 990
Query: 941 TAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIH 1000
F G EE + LEE G G+ I+YDG TG+ F+ + VG++Y +L HMV DK+H
Sbjct: 991 PVFDGASEEDVWATLEEAGMARDGKTILYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLH 1050
Query: 1001 ARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCE 1060
ARS GP ++T+QP G+A+ GG RFGEME L +GAA L E L +SD
Sbjct: 1051 ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSD-------- 1102
Query: 1061 NCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKL 1111
+ R K Y + + E + + + +FK+L+ EL+++ + K+
Sbjct: 1103 -------DVVGRVKTYEAIV-KGENVPEPGVPESFKVLIKELQSLGMDVKM 1145
Score = 101 bits (250), Expect = 4e-20
Identities = 140/617 (22%), Positives = 243/617 (38%), Gaps = 166/617 (26%)
Query: 335 DDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNS 394
DD DH N+RLR G+LL++ FR+ S++ + ++ +M+ NS
Sbjct: 400 DDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDP----------------NS 443
Query: 395 IRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHF 450
I P L I +A+ G + +SQ +D+TN ++ L+H RR+++ L RE+ F
Sbjct: 444 ITPQALIN-IRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGF 502
Query: 451 EARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVR 510
E RD+H +H+GR+CP ETPEGPN GL+ +L+ A++ G + R
Sbjct: 503 EVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVN-------------EFGFMETPYR 549
Query: 511 RPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDG 570
R PE +V A ++ + D + N+ ED
Sbjct: 550 RVDPETGKV-------------TAQIDYLTADEEDNYVVAQANMKLAED----------- 585
Query: 571 RVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEV 630
I EN + E++ +V ++Y+D
Sbjct: 586 ----GSFIDENIIARFRGENI------------VVSRDRVDYMD---------------- 613
Query: 631 TEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGH 690
+ P ++ S IP+ E++ + R GA M +Q++
Sbjct: 614 --------VSPKQVVSAATSCIPFLENDDSNRALMGANMQRQAVP--------------- 650
Query: 691 LLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARST 750
L P+ P+V + M+ V +D A A+++ H + +ER A+
Sbjct: 651 -LLVPEAPIVGTG-MEHVSAKDSGA------AIVSKH-----------RGIVERVTAKEI 691
Query: 751 FFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY-YRHLDEDGLIFPESKV-------E 802
+ R E + K + G DK+ + +R +G Y R + ++G + + ++ E
Sbjct: 692 WVRRLEEVDGKEIKGDLDKYRL-QKFIRSNQGTSYNQRPIVKEGDVVEKREILADGPSME 750
Query: 803 GKDVLIGRTSPPRFLEERGLG---AVSLQERR-----ETSVAVRPSERGVVDKVIITETG 854
++ +GR F+ G A+ L ER TS+ + E +E
Sbjct: 751 KGEMALGRNVLVGFMTWEGYNYEDAIILSERLVKDDVYTSIHIEEYE---------SEAR 801
Query: 855 DGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIP 914
D + RD IP +G+ ++G+I + +D G + V P G+
Sbjct: 802 DTKLGPEEITRD--IPNVGEDALRNLDERGIIRVGAEVKD------GDILVGKVTPKGVT 853
Query: 915 SRMTVGQLLEAIGGKVA 931
+LL AI G+ A
Sbjct: 854 ELTAEERLLHAIFGEKA 870
Score = 72.2 bits (174), Expect = 3e-11
Identities = 75/265 (28%), Positives = 124/265 (46%), Gaps = 58/265 (21%)
Query: 27 LVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYP 86
L+ SY F+D GL+E+ + I+ + ++F +GEP+ YP
Sbjct: 29 LIEIQTASYQWFLDEGLREMFQDISPIQDFTGNLVLEFIDYSLGEPK-----------YP 77
Query: 87 MD-ARIRNLTYSAPLYLEMIPVIRGIEQEPVEVR-----IGELPIMLKSKVCRLYGLSDD 140
+D ++ R++TY+APL ++ +R I +E EV+ +G+ P+M +
Sbjct: 78 VDESKERDVTYAAPLRVK----VRLINKETGEVKEQEVFMGDFPLMTDT----------- 122
Query: 141 ELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEK--YIAKVFSYRHGY 198
G FIING+ERVIVS +P+ EK ++ K Y A V R
Sbjct: 123 -------------GTFIINGAERVIVSQLVRSPSVYYSEKIDKNGKKGYTATVIPNR--- 166
Query: 199 RALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDPEVQQIL-FDN 257
A + +E I+YV I K + ++RALG D++I+D +G D ++ L DN
Sbjct: 167 GAWLELETDAKDIVYVRIDRTRK-IPVTVLLRALGFGSDQEIIDLLGEDEYLRNTLEKDN 225
Query: 258 LEDASDITTQQEALEYIGKLVAPGQ 282
+ A ++AL I + + PG+
Sbjct: 226 TDSA------EKALLEIYERLRPGE 244
>emb|CAB56706.1| (Y16468) DNA-dependent RNA polymerase subunit beta [Listeria
monocytogenes]
Length = 1184
Score = 213 bits (538), Expect = 6e-54
Identities = 138/352 (39%), Positives = 197/352 (55%), Gaps = 21/352 (5%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKY-LGGQTDKFEIPS 774
G+N +VA + + GYN EDAII+++ ++ + S +E+E + LG + +IP+
Sbjct: 757 GRNVLVAFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPN 816
Query: 775 PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLE----ERGLGAV---SL 827
GE R LDE G+I ++V+ D+L+G+ +P E ER L A+
Sbjct: 817 V------GEDALRDLDERGIIRVGAEVKDNDLLVGKVTPKGVTELTAEERLLHAIFGEKA 870
Query: 828 QERRETSVAVRPSERGVV--DKVIITETGDG-----TKLVKVTVRDLRIPEIGDKFASRH 880
+E R+TS+ V G+V K+ E GD +LV+V + R GDK A RH
Sbjct: 871 REVRDTSLRVPHGGGGIVLDVKIFTREAGDELPPGVNQLVRVYIVQKRKIHEGDKMAGRH 930
Query: 881 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDG 940
G KGVI I+P+EDMP+ G D+++NP G+PSRM +GQ+LE G A G V
Sbjct: 931 GNKGVISRILPEEDMPFMPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIHVAT 990
Query: 941 TAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIH 1000
F G EE + +EE G + I+YDG +G+ F+ I VGV+Y +L HMV DK+H
Sbjct: 991 PVFDGANEEDVWSTVEEAGMARDAKTILYDGRSGEAFDNRISVGVMYMIKLAHMVDDKLH 1050
Query: 1001 ARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESD 1052
ARS GP ++T+QP G+A+ GG RFGEME L +GAA L E L +SD
Sbjct: 1051 ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSD 1102
Score = 97.5 bits (239), Expect = 7e-19
Identities = 75/249 (30%), Positives = 119/249 (47%), Gaps = 46/249 (18%)
Query: 276 KLVAPG-QAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDE 334
K+ AP + +E + Y+ +N + HI +P D I Y L G D
Sbjct: 351 KIYAPNDEEKEINIIGNAYIEEN--VKHI--TPSDIISSISYF-------FNLLHGVGDT 399
Query: 335 DDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNS 394
DD DH N+RLR G+LL++ FR+ S++ + ++ +M+ +
Sbjct: 400 DDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDM----------------TT 443
Query: 395 IRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHF 450
I P L I +A+ G + +SQ +D+TN + L+H RR+++ L RE+ +
Sbjct: 444 ITPQQLIN-IRPVVASIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRERAGY 502
Query: 451 EARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVR 510
E RD+H +H+GR+CP ETPEGPN GL+ +L+ A++ G + R
Sbjct: 503 EVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVN-------------KFGFIETPYR 549
Query: 511 RPSPELWRV 519
R PE RV
Sbjct: 550 RVDPETNRV 558
>emb|CAC10557.1| (Y16469) DNA-dependent RNA polymerase subunit beta [Listeria murrayi]
Length = 1062
Score = 212 bits (533), Expect = 2e-53
Identities = 136/352 (38%), Positives = 196/352 (55%), Gaps = 21/352 (5%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKY-LGGQTDKFEIPS 774
G+N +VA + + GYN EDAII+++ ++ + S +E+E + LG + +IP+
Sbjct: 634 GRNVLVAFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPN 693
Query: 775 PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLE----ERGLGAV---SL 827
GE R LDE G+I ++V+ D+L+G+ +P E ER L A+
Sbjct: 694 V------GEDALRDLDERGIIRVGAEVKDNDLLVGKVTPKGVTELTAEERLLHAIFGEKA 747
Query: 828 QERRETSVAVRPSERGVV--DKVIITETGDG-----TKLVKVTVRDLRIPEIGDKFASRH 880
+E R+TS+ V G+V K+ E GD +LV+V + R G K A RH
Sbjct: 748 REVRDTSLRVPHGGGGIVLDVKIFTREAGDELPPGVNQLVRVYIVQKRKIHEGSKMAGRH 807
Query: 881 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDG 940
G KGVI I+P+EDMP+ G D+++NP G+PSRM +GQ+LE G A G V
Sbjct: 808 GNKGVISRILPEEDMPFMPDGTPVDIMLNPLGVPSRMNIGQVLELHLGMAARALGIHVAT 867
Query: 941 TAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIH 1000
F G EE + +EE G + I+YDG TG+ F+ + VG++Y +L HMV DK+H
Sbjct: 868 PVFDGANEEDVWSTVEEAGMARDAKTILYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLH 927
Query: 1001 ARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESD 1052
ARS GP ++T+QP G+A+ GG RFGEME L +GAA L E L +SD
Sbjct: 928 ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSD 979
Score = 96.0 bits (235), Expect = 2e-18
Identities = 77/270 (28%), Positives = 128/270 (46%), Gaps = 47/270 (17%)
Query: 255 FDNLEDASDITTQQEALEYIGKLVAPG-QAREYRLKRAEYVIDNNLLPHIGVSPEDRIRK 313
F L ++ I ++ I K+ AP + +E + Y+ ++ + HI +P D +
Sbjct: 208 FHTLHPSNGIMDDSVVVQSI-KIYAPNDEEKEINIIGNAYIEED--VKHI--TPSDIVSS 262
Query: 314 AYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTK 373
Y L G D DD DH N+RLR G+LL++ FR+ S++ + ++ +M+
Sbjct: 263 ISYF-------FNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSI 315
Query: 374 TYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTL 433
++I P L I +A+ G + +SQ +D+TN + L
Sbjct: 316 QDM----------------STITPQQLIN-IRPVVASIKEFFGSSQLSQFMDQTNPLGEL 358
Query: 434 SHLRRVTS----PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTA 489
+H RR+++ L RE+ +E RD+H +H+GR+CP ETPEGPN GL+ +L+ A++
Sbjct: 359 THKRRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVN-- 416
Query: 490 VPEEEVKEYLMSLGIVPIEVRRPSPELWRV 519
G + RR PE RV
Sbjct: 417 -----------KFGFIETPYRRVDPETNRV 435
>gi|11428554 similar to DNA-directed RNA polymerase I (135 kDa) [Homo sapiens]
Length = 948
Score = 210 bits (529), Expect = 7e-53
Identities = 205/761 (26%), Positives = 338/761 (43%), Gaps = 74/761 (9%)
Query: 84 LYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELR 143
+YP + R R TY L ++ + GI + ++ +G +PIM+KSK+C L L L
Sbjct: 202 VYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALI 261
Query: 144 QLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQE---------KYIAKVFSY 194
+ E+ ++ GGYFIING E+VI + I P R R + +Y +
Sbjct: 262 EHHEEAEEMGGYFIINGIEKVIRML--IMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCV 319
Query: 195 RHGYRAL-VTVERKKDGILYVGIPNVPKPVKFV---YVMRALGLERDKDIVDAVGNDPEV 250
R + A+ + + ++G + + K + F+ + ++AL D I + E
Sbjct: 320 REEHSAVNMNLHYLENGTVMLNFI-YRKELFFLPLGFALKALVSFSDYQIFQELIKGKED 378
Query: 251 QQILFDNLEDASDI------TTQQEALEYIG-----KLVAPGQAREYRLKRAEYVIDNNL 299
L +++ I +TQ++ L Y+G KL P + AE++ + +
Sbjct: 379 DSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQA--AEFLFNQCI 436
Query: 300 LPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVA 359
H+ + E K Y L +M K+ L+ G+ ED+ D N+ + G L +
Sbjct: 437 CIHLKSNTE----KFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEK 492
Query: 360 FSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGR-- 417
+ I+ K Q+ N+ R I LT+ E+ ATG
Sbjct: 493 LEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGID---LTKPFEYLFATGNLRSKTGL 549
Query: 418 -----TGVSQLLDRTNYVSTLSHLRRVTSPLD-REQPHFEARDLHGTHWGRICPTETPEG 471
+G+ + D+ N++ LSH R V D + R L WG +CP TP+G
Sbjct: 550 GLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDG 609
Query: 472 PNCGLVKNLALMAQITTA-VPEEEVKEYLMSLGIVPIE--VRRPSPELWRVYLNGVIIGT 528
CGL+ +L + ++ T V + L +LG+ PI+ R E + V L+GV++G
Sbjct: 610 EPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHRSYSECYPVLLDGVMVGW 669
Query: 529 IEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTK 588
++ K L I R K+ + + +V ++I GKP L
Sbjct: 670 VD--KDLAPGIADSLRHFKVLREKRIPPWMEV---------------VLIPMTGKPSLYP 712
Query: 589 EHVQAIKEGRL-KWSDLVRMGVIEYLDAEEEENAYVAMWPWEV-TEEHTHLELMPAAILG 646
RL + + +G E + E+ VA++ EV TH EL P ++L
Sbjct: 713 GLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLS 772
Query: 647 LPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMK 706
+ A+ IP+ +HN +PRN Y M KQ++G ++ R D + + L PQ PLV +
Sbjct: 773 VIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYD 832
Query: 707 AVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRT--YEAEEKKYLG 764
++ P G N +VAV++Y GY+MEDA+I+NKAS ERG A + +++ + EK G
Sbjct: 833 YYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQG 892
Query: 765 GQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKD 805
+ F I R + LD+DGL F +K++ D
Sbjct: 893 DSSLVFGIKPGDPR------VLQKLDDDGLPFIGAKLQYGD 927
>pir||G75459 DNA-directed RNA polymerase, beta subunit - Deinococcus radiodurans
(strain R1) >gi|6458635|gb|AAF10490.1|AE001944_1
(AE001944) DNA-directed RNA polymerase, beta subunit
[Deinococcus radiodurans]
Length = 1179
Score = 206 bits (518), Expect = 1e-51
Identities = 143/450 (31%), Positives = 218/450 (47%), Gaps = 82/450 (18%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKY-LGGQTDKFEIPS 774
GQN +A++ + G+N EDAI IN+ + + S E E + LG + +IP
Sbjct: 728 GQNITIAIMPFDGFNFEDAICINEDLVRQDFYTSVHIEKDEIEARDTKLGPEKITRDIPG 787
Query: 775 PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTS-------PPRFLEERGLGAVSL 827
+ E R LDEDG++ ++V+ D+L+G+TS P R +
Sbjct: 788 LS------EAALRDLDEDGIVRVGAEVKPGDILVGKTSFKGESEPTPEERLLRSIFGEKA 841
Query: 828 QERRETSVAVRPSERGVVDKVIITETGDG--------TKLVKVTVRDLRIPEIGDKFASR 879
+E ++TS+ V+ + G+V K + GD ++V+V V R ++GDK A+R
Sbjct: 842 REVKDTSLRVQSGQGGIVVKTVRFRRGDEGVDLKPGVREMVRVYVAQKRQLQVGDKVANR 901
Query: 880 HGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVD 939
HG KGV+ IV EDMP+ E G D++ NP G+PSRM +GQ+LE G+VA L G++ +
Sbjct: 902 HGNKGVVSKIVRPEDMPYLEDGTPVDIVFNPLGVPSRMNLGQILETHLGEVARLTGQKFE 961
Query: 940 GTAFIGEPEEKLRKELE------------------------------------------- 956
F E +++ LE
Sbjct: 962 TPVFDSVTEATIKEMLEVAAAERLQARKDDGFELDKREQEVLDRAGKLGVIDAPGDDYEK 1021
Query: 957 -ELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPT 1015
++ TG+ I+YDG TG+ + VG++Y +L+HMV DK+HARS GP ++T+QP
Sbjct: 1022 GQMQLARTGKSILYDGRTGEPISGPVVVGIMYVMKLYHMVEDKLHARSTGPYSLITQQPL 1081
Query: 1016 EGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKV 1075
G+A+ GG RFGEME L +GAA +L E L +SD D R
Sbjct: 1082 GGKAQFGGQRFGEMEVWALEAYGAAHVLQEMLTIKSDDI--------------DGRDAAY 1127
Query: 1076 YCPVCGEEERISKVEMSYAFKLLLDELKAM 1105
V GEE +S + +FK+L+ EL ++
Sbjct: 1128 QSIVKGEE--VSGSTIPESFKVLVKELHSL 1155
Score = 106 bits (262), Expect = 1e-21
Identities = 124/471 (26%), Positives = 201/471 (42%), Gaps = 104/471 (22%)
Query: 64 FGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLY--LEMIP----VIRGIEQE-PV 116
F + R+GEPE+ P + R ++LTY APLY LE+I VI+G + + P
Sbjct: 96 FIEYRLGEPEYS----------PEECREKDLTYEAPLYVKLELIHKDTGVIKGFKPDSPP 145
Query: 117 E--VRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPN 174
E V +G LP+M G FIING++RV++S +P
Sbjct: 146 ESWVFLGNLPLMTFD------------------------GSFIINGADRVVISQIHRSPG 181
Query: 175 RTLVEKDERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGL 234
+ +K + +E D +L + + PV + +R LG+
Sbjct: 182 VYFTSSYKGIKKQYTAAIIPMPKRGPWIELEFAGD-VLEMKVNKRKFPVSLL--LRVLGM 238
Query: 235 ----------------ERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLV 278
E +D +G D + + LF L D + +A++Y+ L+
Sbjct: 239 DDASIRALFTEFTPEVEPGEDKSAGMGADEALLR-LFTVLRPG-DPPKRDKAIQYLFGLL 296
Query: 279 A---------PGQARE------YRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALK 323
A PG+ + R +R ++ G+ R A G+ +
Sbjct: 297 ADPRRYDLGEPGRFKMNTKLGVQRQERTLLKFEDGKFSDAGLVDTIRYLMALQQGLETVP 356
Query: 324 VIELSLGKRD----EDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRG 379
+++ D EDD DH N+R+R G+LL D RV ++ + ++
Sbjct: 357 MVDEDGVVTDVPVAEDDIDHLGNRRVRTVGELLADQLRVGMGRMARGVR----------- 405
Query: 380 EKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRV 439
E+ + GN ++ P L A + GR+ +SQ D+TN +S L H RR+
Sbjct: 406 ERMLLGN-----PDAATPTKLVNNRPIVAAMREF-FGRSQLSQFKDQTNPLSDLRHKRRI 459
Query: 440 TS----PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQI 486
++ L RE+ F+ RD+H TH+GRICP ETPEG N GL+ +L+ A++
Sbjct: 460 SALGPGGLTRERAGFDVRDVHRTHYGRICPIETPEGANIGLISSLSSYAKV 510
>gi|11467690 RNA polymerase b-chain [Guillardia theta]
>gi|6094123|sp|O78485|RPOB_GUITH DNA-DIRECTED RNA
POLYMERASE BETA CHAIN >gi|3603015|gb|AAC35676.1|
(AF041468) RNA polymerase b-chain [Guillardia theta]
Length = 1096
Score = 204 bits (513), Expect = 5e-51
Identities = 135/367 (36%), Positives = 194/367 (52%), Gaps = 36/367 (9%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKY-LGGQTDKFEIPS 774
GQN +VA L + GYN EDA +IN+ + + S YE E ++ LG + E+P+
Sbjct: 648 GQNILVAYLPWEGYNYEDAFLINERLVYNDVYTSVHIEKYEIEARQTKLGSEEITRELPN 707
Query: 775 PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEE-------RGLGAVSL 827
GE R LDE+G+I S VE D+LIG+ +P ++ R +
Sbjct: 708 V------GEAALRKLDENGIIVIGSWVEAGDILIGKVTPKGESDQPPEGKLLRAIFGEKA 761
Query: 828 QERRETSVAVRPSERG-VVDKVIIT-ETGD-----GTKLVKVTVRDLRIPEIGDKFASRH 880
++ R+TS+ V RG ++D I T E GD +++V + R ++GDK A RH
Sbjct: 762 RDVRDTSLRVPNGGRGRILDVRIFTREKGDELPTGANIVIRVYIAQSRKIQVGDKMAGRH 821
Query: 881 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDG 940
G KG+I I+P++DMP+ G DL++NP G+PSRM VGQ+ E + G A +R
Sbjct: 822 GNKGIISRILPRQDMPYLPDGTPVDLVLNPLGVPSRMNVGQIFECLLGLAAENLNKRFKI 881
Query: 941 TAFIGEP---------EEKLRKELEELG------FKHTGREIMYDGITGKRFEADIFVGV 985
T F EKL + + G +H G+ +YDG TG+ F+ + +GV
Sbjct: 882 TPFDEMHGAEASRVLVNEKLNEAKIKTGENWLFDLRHPGKITLYDGRTGEAFDNPVTIGV 941
Query: 986 IYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIE 1045
Y +L H+V DKIHARS GP ++T+QP GRA+ GG R GEME L GA+ L E
Sbjct: 942 SYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGASYTLQE 1001
Query: 1046 RLLEESD 1052
L +SD
Sbjct: 1002 LLTVKSD 1008
Score = 115 bits (285), Expect = 3e-24
Identities = 132/494 (26%), Positives = 222/494 (44%), Gaps = 100/494 (20%)
Query: 27 LVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYP 86
LV S+ F++ GL E + F I + E+ F + + R P +
Sbjct: 14 LVEIQRASFCWFLNEGLAEEIQSFSPIVNYTGNLELHL---------FGDQYTLRYPKHN 64
Query: 87 M-DARIRNLTYSAPLYL--EMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELR 143
+ + + R+ TYS +Y+ ++I G+ +E EV IG+LP+M
Sbjct: 65 INECKRRDTTYSVQIYVPAQLINRETGVIKEQ-EVFIGDLPLMTDR-------------- 109
Query: 144 QLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEK--YIAKVFSYRHGYRAL 201
G FIING+ERVIV+ +P + ++Q + Y + + S R +
Sbjct: 110 ----------GTFIINGAERVIVNQIVRSPGIYYKSELDKQGRRTYSSSLISNRGAW--- 156
Query: 202 VTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDA 261
V E ++ +++V I K V+ ++A+GL D DI + + + PE + F
Sbjct: 157 VKFETDRNDLVWVRIDKTRKIPAHVF-LKAMGLS-DTDIYNGLRH-PEYLKKTF---RFE 210
Query: 262 SDITTQQEALEYIGKL-------VAPGQA---------REYRL-KRAEYVIDNNLLPHIG 304
+ TT+ ++ KL V GQ + Y L K Y ++ L +
Sbjct: 211 GNYTTETALIQMYNKLRPGEPATVTGGQQLLYSRFFDPKRYDLGKVGRYKLNKKLNLSVP 270
Query: 305 -----VSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVA 359
++P+D + YL I L + DD DH N+R+R G+LL++ R+
Sbjct: 271 ENVRVLTPQDTLAAIDYL-------INLKFEIGETDDIDHLGNRRVRSVGELLQNQVRIG 323
Query: 360 FSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNS-IRPDVLTERIEHALATGAWPGGRT 418
++L + I+ +MT +I N+ + P + I G +
Sbjct: 324 LNRLERIIRERMT-----------ICDITSLTPNTLVNPKPIIASIREFF-------GSS 365
Query: 419 GVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHFEARDLHGTHWGRICPTETPEGPNC 474
+SQ +D+TN ++ L+H RR+++ L+R++ F RD+H +H+GRICP ETPEGPN
Sbjct: 366 QLSQFMDQTNPLAELTHKRRISALGPGGLNRDRAGFGVRDIHPSHYGRICPIETPEGPNA 425
Query: 475 GLVKNLALMAQITT 488
GL+ LA A+I T
Sbjct: 426 GLIGVLATHARINT 439
>gi|11467373 beta subunit of RNA polymerase [Cyanophora paradoxa]
>gi|1350843|sp|P48119|RPOB_CYAPA DNA-DIRECTED RNA
POLYMERASE BETA CHAIN >gi|7434716|pir||T06918
DNA-directed RNA polymerase (EC 2.7.7.6) beta chain -
Cyanophora paradoxa cyanelle >gi|1016174|gb|AAA81261.1|
(U30821) beta subunit of RNA polymerase [Cyanophora
paradoxa]
Length = 1103
Score = 201 bits (505), Expect = 5e-50
Identities = 161/508 (31%), Positives = 242/508 (46%), Gaps = 99/508 (19%)
Query: 637 LELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWAN---------FRIRVDT 687
+ + P + SLIP+ EH+ A R G+ M +Q++ L A F++ D+
Sbjct: 515 IAISPLQTFSVSTSLIPFLEHDDANRALMGSNMQRQAVPLLHAEKPLVGTGLEFQVAKDS 574
Query: 688 RGHLLH---------------------------------------YPQIPLV--NSRIMK 706
R L++ Q P+V R+ K
Sbjct: 575 RRVLINKSEGLVKRVTGDHICIQTDTGKEINYTLIKYQRSNQDTCITQRPIVFEGERVKK 634
Query: 707 AVGYEDRPA--------GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAE 758
D A GQN +VA + + GYN EDAI+IN+ + + S YE E
Sbjct: 635 GQILADDTATDKGELALGQNLLVAYMPWEGYNYEDAILINERLVYEDVYTSIHIEKYETE 694
Query: 759 EKKY-LGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFL 817
++ LG + EIP+ E R+LDE G++ S ++G D+L+G+ +P
Sbjct: 695 TRQTKLGIEEITREIPNVN------EYSLRNLDEKGIVSVGSWIKGGDILVGKVAPKAES 748
Query: 818 EERGLGAV-------SLQERRETSVAVRPSERG-VVD-KVIITETGD--------GTKLV 860
++ G + ++ R+TS+ + E+G +VD ++ I E G+ +V
Sbjct: 749 DQPPEGKLLKAIFGEKNRDVRDTSLRMPSGEKGRIVDVRIFIREFGEMLYPGANTANTIV 808
Query: 861 KVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVG 920
++ + R ++GDK A RHG KG+I I+P++DMP+ G D+I+NP G+PSRM VG
Sbjct: 809 RIYIAQKRKIQVGDKMAGRHGNKGIISKILPRQDMPYLPDGTPIDIILNPLGVPSRMNVG 868
Query: 921 QLLEAIGGKVAALKGRRVDGTAF---IGEP------EEKLRKELEELGFK-------HTG 964
Q+ E + G A G R F G+ EKL KE +EL K H G
Sbjct: 869 QVYECLLGWAAEHLGVRFKLIPFDERFGKQASRTFIHEKL-KEAKELTNKNWLFNSNHPG 927
Query: 965 REIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGL 1024
+ ++DG TG+ F+ I VG Y +L H+V DKIHARS GP ++T+QP G+A++GG
Sbjct: 928 KIQLFDGRTGESFDNPIMVGKAYMLKLVHLVDDKIHARSTGPYSLITQQPLGGKAQQGGQ 987
Query: 1025 RFGEMERDVLVGHGAAMLLIERLLEESD 1052
RFGEME L GAA L E L +SD
Sbjct: 988 RFGEMEVWALEAFGAAYTLQEILTIKSD 1015
Score = 112 bits (277), Expect = 3e-23
Identities = 122/483 (25%), Positives = 222/483 (45%), Gaps = 92/483 (19%)
Query: 34 SYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYPMD-ARIR 92
S+ F + GL E ++ F + +FEV F + + + P + ++ A+ R
Sbjct: 21 SFKWFFEEGLIEEIENFSPVIDLRGNFEVHF---------YLKNYELEAPTFTLEEAKQR 71
Query: 93 NLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDP-KD 151
+LTY+A LY+ PVE+R E I+ + ++ GE P
Sbjct: 72 DLTYAAQLYI------------PVELRDLETGIVKQDRIF------------FGEIPLMT 107
Query: 152 PGGYFIINGSERVIVSIEDIAPNRTL-VEKDERQEK-YIAKVFSYRHGYRALVTVERKKD 209
F+ING ERVI++ +P V DE+ + Y + S R + + E KD
Sbjct: 108 DRCTFLINGVERVIINQIIRSPGIYYSVNTDEQGTRTYDVTIISNRGAW---LKFEVDKD 164
Query: 210 GILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQE 269
++++ I + ++ ++AL L + +I+ A+ + +Q+ ++++ + T++E
Sbjct: 165 DLIWMRIDKTHRLPCHIF-LKALNLS-ESEILSALTHPEFLQKTIYEHGD-----CTEEE 217
Query: 270 ALEYIGKLVAPGQ------------AREYRLKRAE------YVIDNNLLPHIGVSPEDRI 311
AL + + PG+ +R + KR + Y ++ L ++ VSP RI
Sbjct: 218 ALIEFHRQLRPGEPPNSIQGRYLLYSRFFDPKRYDLGFVGRYKLNKKL--NLNVSPNIRI 275
Query: 312 RKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQM 371
+ + +I L G DD DH N+R++ G+LL+ R+ ++L + I ++
Sbjct: 276 LTTQDILEILNYLINLQFGMGQIDDIDHLGNRRVKAVGELLQSQLRIGLNRLERLIHDRL 335
Query: 372 ----TKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRT 427
TK++++R + + I + E ++ G + +SQ +D+T
Sbjct: 336 SMLTTKSFKKRKK----------LTTLINAKPINECLKEFF-------GSSQLSQFMDQT 378
Query: 428 NYVSTLSHLRRVT----SPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALM 483
N ++ L H RR+T L R++ RD+H +H+GRICP ETPEG N GLV +L
Sbjct: 379 NPLAELIHKRRLTILGPGGLSRDRAGCAVRDIHPSHYGRICPIETPEGQNAGLVGSLTTH 438
Query: 484 AQI 486
A +
Sbjct: 439 AHL 441
>gi|11466679 rpoB [Marchantia polymorpha] >gi|133415|sp|P06272|RPOB_MARPO
DNA-DIRECTED RNA POLYMERASE BETA CHAIN
>gi|66972|pir||RNLVB DNA-directed RNA polymerase (EC
2.7.7.6) beta chain - liverwort (Marchantia polymorpha)
chloroplast >gi|11647|emb|CAA28061.1| (X04465) rpoB
[Marchantia polymorpha]
Length = 1065
Score = 196 bits (493), Expect = 1e-48
Identities = 138/420 (32%), Positives = 211/420 (49%), Gaps = 48/420 (11%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSP 775
G+N +VA + + GYN EDAI+IN+ I + S YE E + G +KF P
Sbjct: 647 GKNILVAYMPWEGYNFEDAILINERLIYEDIYTSIHIERYEIEARVTSQGP-EKFTNEIP 705
Query: 776 TVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEE---------RGLGAVS 826
+ Y RHLD++G++ S VE DVL+G+ +P E + + +
Sbjct: 706 HLDDY----LLRHLDQNGIVLTGSWVETGDVLVGKLTPQETEENLRAPEGKLLQAIFGIQ 761
Query: 827 LQERRETSVAVRPSERG-VVDKVIITE---TGDGTKLVKVTVRDLRIPEIGDKFASRHGQ 882
+ +ET + V P RG V+D +I++ + + +++ + + R +IGDK A RHG
Sbjct: 762 VATSKETCLKVPPGGRGRVIDIRLISQEDNSANTAQIIHIYILQKRKIQIGDKVAGRHGN 821
Query: 883 KGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTA 942
KG+I I+P++DMP+ + G D+I++P G+PSRM VGQ+ E + G + +
Sbjct: 822 KGIISKILPRQDMPFLQDGTPIDMILSPLGVPSRMNVGQIFECLLGLAGSFLHKNYRIIP 881
Query: 943 FIGEPEEKLRK-----ELEELGFKHT----------GREIMYDGITGKRFEADIFVGVIY 987
F E + + EL + K T G+ + DG TG+ FE I +G Y
Sbjct: 882 FDERYEREASRKLVFSELYKASKKTTNPWLFEPDNPGKNRLIDGRTGEIFEQPITIGKAY 941
Query: 988 YQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERL 1047
+L H V DKIHARS GP ++T+QP GR+R GG R GEME L G G A +L E L
Sbjct: 942 MLKLIHQVDDKIHARSSGPYALVTQQPLRGRSRRGGQRVGEMEVWALEGFGVAYILQEML 1001
Query: 1048 LEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVI 1107
+SD HI + R++V + E +FKLL+ EL+++ +
Sbjct: 1002 TIKSD-----------HI----RARYEVLGAIVTGEPIPKPNTAPESFKLLVRELRSLAL 1046
>sp|P77965|RPOB_SYNY3 DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT) >gi|7434712|pir||S77518
DNA-directed RNA polymerase (EC 2.7.7.6) beta chain -
Synechocystis sp. (strain PCC 6803)
>gi|1652443|dbj|BAA17365.1| (D90905) RNA polymerase beta
subunit [Synechocystis sp.]
Length = 1102
Score = 196 bits (493), Expect = 1e-48
Identities = 134/367 (36%), Positives = 196/367 (52%), Gaps = 36/367 (9%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKY-LGGQTDKFEIPS 774
GQN +VA + + GYN EDAI+I++ + + S +E E ++ LG + EIP+
Sbjct: 653 GQNILVAYMPWEGYNYEDAILISERLVYDDVYTSIHIEKFEIEARQTKLGPEEITREIPN 712
Query: 775 PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEE-------RGLGAVSL 827
GE R+LDE G+I + VE D+L+G+ +P ++ R +
Sbjct: 713 V------GEDALRNLDEHGIIRIGAWVESGDILVGKVTPKGEADQPPEEKLLRAIFGEKA 766
Query: 828 QERRETSVAVRPSERG-VVD-KVIITETGD-----GTKLVKVTVRDLRIPEIGDKFASRH 880
++ R+ S+ V E+G VVD +V E GD +V++ V R ++GDK A RH
Sbjct: 767 RDVRDNSLRVPNGEKGRVVDVRVFTREKGDELPPGANMVVRIYVAQKRKIQVGDKMAGRH 826
Query: 881 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDG 940
G KG+I I+P EDMP+ G D+ +NP G+PSRM VGQ+ E + G G R
Sbjct: 827 GNKGIISRILPIEDMPYLPDGRPIDIALNPLGVPSRMNVGQVFECLLGWAGENLGVRFKI 886
Query: 941 TAFIGEPEEKLRKE-----LEELGFK----------HTGREIMYDGITGKRFEADIFVGV 985
T F E+ ++ LEE + H G+ ++DG TG+ F+ I VG
Sbjct: 887 TPFDEMYGEEASRDTVHGLLEEASQRPNKDWVFNENHPGKIQVFDGRTGEPFDRPITVGQ 946
Query: 986 IYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIE 1045
Y +L H+V DKIHARS GP ++T+QP G+A++GG RFGEME L +GAA +L E
Sbjct: 947 AYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYILQE 1006
Query: 1046 RLLEESD 1052
L +SD
Sbjct: 1007 LLTVKSD 1013
Score = 128 bits (319), Expect = 3e-28
Identities = 228/973 (23%), Positives = 383/973 (38%), Gaps = 248/973 (25%)
Query: 34 SYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYPMD-ARIR 92
S++ F++ GL E ++ F I E+ F + + ++P Y +D ++ R
Sbjct: 19 SFHWFLEEGLIEELNSFSPISDYTGKLELHF---------LGKDYKLKQPKYDVDESKRR 69
Query: 93 NLTYSAPLYLEMIPVIRGI-EQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKD 151
+ +YS +Y+ + + E + EV IG+LP+M +
Sbjct: 70 DASYSVQMYVPTRLINKETGEIKEQEVFIGDLPLMTER---------------------- 107
Query: 152 PGGYFIINGSERVIVSIEDIAPN---RTLVEKDERQEKYIAKVFSYRHGYRALVTVERKK 208
G FIING+ERVIV+ +P + ++K+ R+ Y A + R + + E K
Sbjct: 108 --GTFIINGAERVIVNQIVRSPGVYYKKELDKNGRRT-YSASLIPNRGAW---LKFETDK 161
Query: 209 DGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQ 268
+G++YV I K + +++A+GL D +I+D++ + Q+ L D T++
Sbjct: 162 NGLVYVRIDKTRK-LSAQVLLKAIGLS-DNEILDSLSHPEFYQKTL-----DKEGNPTEE 214
Query: 269 EALEYIGKLVAPGQA-----------------REYRLKRA-EYVIDNNLLPHIG-----V 305
EAL + K + PG+ + Y L R Y ++ L + +
Sbjct: 215 EALVELYKKLRPGEPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLRLNEADTTRVL 274
Query: 306 SPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVK 365
+P+D + YL I L DD DH N+R+R G+LL++ RV ++L +
Sbjct: 275 TPQDILAAINYL-------INLEFDVGTTDDIDHLGNRRVRSVGELLQNQIRVGLNRLER 327
Query: 366 DIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLD 425
I+ +MT + + ++ + P L I+ G + +SQ +D
Sbjct: 328 IIRERMTVS---ESDALTPASL-------VNPKPLVAAIKEFF-------GSSQLSQFMD 370
Query: 426 RTNYVSTLSHLRRVTS----PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLA 481
+TN ++ L+H RR+++ L RE+ F RD+H +H GRICP ETPEGPN GL+ +LA
Sbjct: 371 QTNPLAELTHKRRISALGPGGLTRERAGFAVRDIHPSHHGRICPVETPEGPNAGLIGSLA 430
Query: 482 LMAQITTAVPEEEVKEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKK 541
A+ V +Y G IE VE
Sbjct: 431 TCAR---------VNDY----------------------------GFIETPYFRVE---- 449
Query: 542 DRRSGKISDIINVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKW 601
SG++ +D+ VY+ +D E ++ + +EG +
Sbjct: 450 ---SGRVR--------KDLDPVYLTAD-----------EEDDMRVAPGDIPTDEEGNIIG 487
Query: 602 SDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAP 661
+ E+ E+ YVA+ P I+ + S+IP+ EH+ A
Sbjct: 488 ESVPIRYRQEFSTTSPEQVDYVAVSP--------------VQIISVATSMIPFLEHDDAN 533
Query: 662 RNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVV 721
R G+ M +Q++ L +R P+ PLV + G E + A + +V
Sbjct: 534 RALMGSNMQRQAVPL------LR----------PERPLVGT------GLEAQAARDSGMV 571
Query: 722 AVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEE-----KKYLGGQTDKFEIPSPT 776
V HG + A+ R S + EE +KY D P
Sbjct: 572 IVSRTHG-----IVTYVDATEIRVQPHSPDNPAEKGEEIVYPIQKYQRSNQDTCLNQRPL 626
Query: 777 VRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVA 836
V Y GE + ++ S EG ++ +G+ ++ G A
Sbjct: 627 V--YAGE----DVVPGQVLADGSATEGGELALGQNILVAYMPWEGYNYED---------A 671
Query: 837 VRPSERGVVDKVI----ITETGDGTKLVKVTVRDL--RIPEIGDKFASRHGQKGVIGLIV 890
+ SER V D V I + + K+ ++ IP +G+ + G+I +
Sbjct: 672 ILISERLVYDDVYTSIHIEKFEIEARQTKLGPEEITREIPNVGEDALRNLDEHGIIRI-- 729
Query: 891 PQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVA------------ALKGRRV 938
W ESG + V P G + +LL AI G+ A KGR V
Sbjct: 730 ----GAWVESGDILVGKVTPKGEADQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVV 785
Query: 939 DGTAFIGEPEEKL 951
D F E ++L
Sbjct: 786 DVRVFTREKGDEL 798
>gi|11466382 beta subunit of RNA polymerase [Mesostigma viride]
>gi|7259525|gb|AAF43826.1|AF166114_38 (AF166114) beta
subunit of RNA polymerase [Mesostigma viride]
Length = 1080
Score = 196 bits (492), Expect = 2e-48
Identities = 124/364 (34%), Positives = 189/364 (51%), Gaps = 33/364 (9%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKY-LGGQTDKFEIPS 774
GQN +VA + + GYN EDAI+I++ + + S YE + +K LG + EIP+
Sbjct: 662 GQNILVAYMPWEGYNFEDAILISEKLVYEDIYTSIHIEKYEVDARKTKLGPEKITREIPN 721
Query: 775 PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETS 834
+ R+LD++G++ P ++VE D+L+G+ +P L++ G + E +
Sbjct: 722 VN------DHLLRNLDDNGIVIPGARVESGDILVGKVTPKEDLDQHPEGKLLRAIFGEKA 775
Query: 835 VAVRPSE----RGVVDKVIITETGDGTKL-------VKVTVRDLRIPEIGDKFASRHGQK 883
VR S GV V+ G +L V V++ R ++GDK A RHG K
Sbjct: 776 RDVRDSSLRVPNGVSGTVVNVRRLTGKELPSGVIMMVHVSISQKRKIQVGDKMAGRHGNK 835
Query: 884 GVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAF 943
G+I I+P++DMP+ + G D+++NP G+PSRM VGQ+ E + G F
Sbjct: 836 GIISKILPRQDMPYLQDGTPVDMVLNPLGVPSRMNVGQVFECLLGLAGEYLSENYKLMPF 895
Query: 944 I---------GEPEEKLRKELEELGF------KHTGREIMYDGITGKRFEADIFVGVIYY 988
G KL + ++ G+ + G+ ++DG TG+ F+ + +G Y
Sbjct: 896 DEMYGKETSRGLVYSKLYEARQKTGYPWLFNIQSPGKSKLFDGRTGESFDQPVTIGKAYM 955
Query: 989 QRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLL 1048
+L H+V DKIHARS GP ++T+QP GRA+ GG R GEME L G GAA L E L
Sbjct: 956 LKLVHLVDDKIHARSTGPYSLVTQQPLGGRAKHGGQRLGEMEVWALEGFGAAYTLQELLT 1015
Query: 1049 EESD 1052
+SD
Sbjct: 1016 IKSD 1019
Score = 127 bits (315), Expect = 9e-28
Identities = 132/490 (26%), Positives = 221/490 (44%), Gaps = 98/490 (20%)
Query: 27 LVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYP 86
L+ L S+ F+ +GL E + +F I + E++F F E + ++P Y
Sbjct: 22 LIEMQLSSFRIFLKKGLIEELKDFSVISNSKKNLELRF---------FPEKYKLKRPKYN 72
Query: 87 MDARIRNL-TYSAPLYLEM-IPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQ 144
IR TY+ LY+ + R E + +V +GE+P+M
Sbjct: 73 ERTSIRRASTYTCQLYVPAKLTNKRTGEIQEQDVFLGEIPLMTGR--------------- 117
Query: 145 LGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEK----YIAKVFSYRHGYRA 200
G FIINGS RVIV+ I + + K E +K + A + S R +
Sbjct: 118 ---------GSFIINGSSRVIVN--QIVRSPGIYYKREIDKKGRKTHSATIISNRGAW-- 164
Query: 201 LVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVG-----------NDPE 249
+ +E K+G+++ I + K V + V +A+GL ++ +I DA+ DP
Sbjct: 165 -LRIETDKNGLIWARIGKIRK-VSIMIVFKAMGLTKN-EIFDALKYPQFLKKTIQETDPY 221
Query: 250 VQQIL-----FDNLEDASDITTQQEALE---YIGKLVAPGQAREYRL-KRAEYVIDNNLL 300
++ + F+N E S + + +E LE + K G+ Y++ K+ + I N+
Sbjct: 222 LENDIQHDDDFEN-ESTSTLLSTREILESRFFQSKYYDLGKVGRYKINKKLQLNIPENIR 280
Query: 301 PHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAF 360
++ +D + YL I L DD DH N+R+R G+L+++ RV
Sbjct: 281 V---LTVQDILAAVDYL-------INLEFNIGTLDDIDHLKNRRVRSVGELIQNQVRVGL 330
Query: 361 SQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGV 420
+L + I Y+R GE + + + P L I G + +
Sbjct: 331 GRLERMI-------YKRMGES---SPDSLTLTSLVNPKPLVGAIREFF-------GSSQL 373
Query: 421 SQLLDRTNYVSTLSHLRRVT----SPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGL 476
SQ +D+TN +S ++H RR++ L RE+ RD+H +H+GRICP ETPEGPN GL
Sbjct: 374 SQFMDQTNPLSEITHKRRLSCLGPGGLSRERAGLAVRDIHPSHYGRICPIETPEGPNAGL 433
Query: 477 VKNLALMAQI 486
+ +LA +++
Sbjct: 434 IGSLATHSRV 443
>pir||F70535 probable rpoB protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2143293|emb|CAB09390.1| (Z95972) rpoB [Mycobacterium
tuberculosis]
Length = 1172
Score = 190 bits (478), Expect = 7e-47
Identities = 144/440 (32%), Positives = 218/440 (48%), Gaps = 70/440 (15%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKY-LGGQTDKFEIPS 774
G+N +VA++ + G+N EDAII++ +E + S +E + + LG + +IP+
Sbjct: 710 GKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN 769
Query: 775 PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLE----ERGLGAV---SL 827
+ ++ LDE G++ ++V D+L+G+ +P E ER L A+
Sbjct: 770 IS------DEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKA 823
Query: 828 QERRETSVAVRPSERGVVDKVIITETGDG-------TKLVKVTVRDLRIPEIGDKFASRH 880
+E R+TS+ V E G V + + D +LV+V V R GDK A RH
Sbjct: 824 REVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRH 883
Query: 881 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEA-------IGGKVAAL 933
G KGVIG I+P EDMP+ G D+I+N HG+P RM +GQ+LE G KV A
Sbjct: 884 GNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAA 943
Query: 934 KG------------------RRVDGTAFIGEPEEKLRKELE--------ELGFKHTGREI 967
KG V F G E +L+ L ++ G+ +
Sbjct: 944 KGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAM 1003
Query: 968 MYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFG 1027
++DG +G+ F + VG +Y +LHH+V DKIHARS GP ++T+QP G+A+ GG RFG
Sbjct: 1004 LFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFG 1063
Query: 1028 EMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERIS 1087
EME + +GAA L E L +SD T R KVY + + E I
Sbjct: 1064 EMECWAMQAYGAAYTLQELLTIKSDDT---------------VGRVKVYEAIV-KGENIP 1107
Query: 1088 KVEMSYAFKLLLDELKAMVI 1107
+ + +FK+LL EL+++ +
Sbjct: 1108 EPGIPESFKVLLKELQSLCL 1127
Score = 120 bits (298), Expect = 9e-26
Identities = 163/722 (22%), Positives = 290/722 (39%), Gaps = 203/722 (28%)
Query: 4 PTVVEVTPDDL-WIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEV 62
P +++V D W++ W+E R ++ GL+EV+ E I+ +
Sbjct: 45 PGLLDVQTDSFEWLIGSPRWRESAAERGDVNPVG-----GLEEVLYELSPIEDFSGSMSL 99
Query: 63 KFGKIRVGEPEFQEPHGQRKPLYPMD-ARIRNLTYSAPLYL--EMIPVIRGIEQEPVEVR 119
F +P F + P+D + +++TY+APL++ E I G E + V
Sbjct: 100 SFS-----DPRFDDVKA------PVDECKDKDMTYAAPLFVTAEFINNNTG-EIKSQTVF 147
Query: 120 IGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPN---RT 176
+G+ P+M + G FIING+ERV+VS +P
Sbjct: 148 MGDFPMMTEK------------------------GTFIINGTERVVVSQLVRSPGVYFDE 183
Query: 177 LVEKDERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLER 236
++K + + KV R + +R G+ P V +++ALG
Sbjct: 184 TIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTV----LLKALGWTS 239
Query: 237 DKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQA------------- 283
++ IV+ G +I+ LE + + T + L+ KL PG+
Sbjct: 240 EQ-IVERFG----FSEIMRSTLEKDNTVGTDEALLDIYRKL-RPGEPPTKESAQTLLENL 293
Query: 284 ----REYRLKRA-EYVIDNNLLPHIG-------VSPEDRIRKAYYL-----GMMALKV-- 324
+ Y L R Y ++ L H+G ++ ED + YL G + V
Sbjct: 294 FFKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPG 353
Query: 325 -IELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
+E+ + + DD DH+ N+RLR G+L+++ RV S++ + ++ +MT
Sbjct: 354 GVEVPV---ETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVE------ 404
Query: 384 FGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS-- 441
+I P L I +A G + +SQ +D+ N +S L+H RR+++
Sbjct: 405 ----------AITPQTLIN-IRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALG 453
Query: 442 --PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYL 499
L RE+ E RD+H +H+GR+CP ETPEGPN GL+ +L++ A++
Sbjct: 454 PGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVN------------ 501
Query: 500 MSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYED 559
G + R+ V+ G + D +I+ + E+
Sbjct: 502 -PFGFIETPYRK------------VVDGVVSD------------------EIVYLTADEE 530
Query: 560 VREVYVNSD-----DGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLD 614
R V ++ DGR P ++V + G +EY+
Sbjct: 531 DRHVVAQANSPIDADGRFVEPRVLVRR------------------------KAGEVEYVP 566
Query: 615 AEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSL 674
+ E + ++++ P ++ + ++IP+ EH+ A R GA M +Q++
Sbjct: 567 SSEVD----------------YMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 610
Query: 675 GL 676
L
Sbjct: 611 PL 612
>sp|P47766|RPOB_MYCTU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
Length = 1178
Score = 190 bits (478), Expect = 7e-47
Identities = 144/440 (32%), Positives = 218/440 (48%), Gaps = 70/440 (15%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKY-LGGQTDKFEIPS 774
G+N +VA++ + G+N EDAII++ +E + S +E + + LG + +IP+
Sbjct: 716 GKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN 775
Query: 775 PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLE----ERGLGAV---SL 827
+ ++ LDE G++ ++V D+L+G+ +P E ER L A+
Sbjct: 776 IS------DEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKA 829
Query: 828 QERRETSVAVRPSERGVVDKVIITETGDG-------TKLVKVTVRDLRIPEIGDKFASRH 880
+E R+TS+ V E G V + + D +LV+V V R GDK A RH
Sbjct: 830 REVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRH 889
Query: 881 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEA-------IGGKVAAL 933
G KGVIG I+P EDMP+ G D+I+N HG+P RM +GQ+LE G KV A
Sbjct: 890 GNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAA 949
Query: 934 KG------------------RRVDGTAFIGEPEEKLRKELE--------ELGFKHTGREI 967
KG V F G E +L+ L ++ G+ +
Sbjct: 950 KGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAM 1009
Query: 968 MYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFG 1027
++DG +G+ F + VG +Y +LHH+V DKIHARS GP ++T+QP G+A+ GG RFG
Sbjct: 1010 LFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFG 1069
Query: 1028 EMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERIS 1087
EME + +GAA L E L +SD T R KVY + + E I
Sbjct: 1070 EMECWAMQAYGAAYTLQELLTIKSDDT---------------VGRVKVYEAIV-KGENIP 1113
Query: 1088 KVEMSYAFKLLLDELKAMVI 1107
+ + +FK+LL EL+++ +
Sbjct: 1114 EPGIPESFKVLLKELQSLCL 1133
Score = 120 bits (298), Expect = 9e-26
Identities = 163/722 (22%), Positives = 290/722 (39%), Gaps = 203/722 (28%)
Query: 4 PTVVEVTPDDL-WIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEV 62
P +++V D W++ W+E R ++ GL+EV+ E I+ +
Sbjct: 51 PGLLDVQTDSFEWLIGSPRWRESAAERGDVNPVG-----GLEEVLYELSPIEDFSGSMSL 105
Query: 63 KFGKIRVGEPEFQEPHGQRKPLYPMD-ARIRNLTYSAPLYL--EMIPVIRGIEQEPVEVR 119
F +P F + P+D + +++TY+APL++ E I G E + V
Sbjct: 106 SFS-----DPRFDDVKA------PVDECKDKDMTYAAPLFVTAEFINNNTG-EIKSQTVF 153
Query: 120 IGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPN---RT 176
+G+ P+M + G FIING+ERV+VS +P
Sbjct: 154 MGDFPMMTEK------------------------GTFIINGTERVVVSQLVRSPGVYFDE 189
Query: 177 LVEKDERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLER 236
++K + + KV R + +R G+ P V +++ALG
Sbjct: 190 TIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTV----LLKALGWTS 245
Query: 237 DKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQA------------- 283
++ IV+ G +I+ LE + + T + L+ KL PG+
Sbjct: 246 EQ-IVERFG----FSEIMRSTLEKDNTVGTDEALLDIYRKL-RPGEPPTKESAQTLLENL 299
Query: 284 ----REYRLKRA-EYVIDNNLLPHIG-------VSPEDRIRKAYYL-----GMMALKV-- 324
+ Y L R Y ++ L H+G ++ ED + YL G + V
Sbjct: 300 FFKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPG 359
Query: 325 -IELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
+E+ + + DD DH+ N+RLR G+L+++ RV S++ + ++ +MT
Sbjct: 360 GVEVPV---ETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVE------ 410
Query: 384 FGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS-- 441
+I P L I +A G + +SQ +D+ N +S L+H RR+++
Sbjct: 411 ----------AITPQTLIN-IRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALG 459
Query: 442 --PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYL 499
L RE+ E RD+H +H+GR+CP ETPEGPN GL+ +L++ A++
Sbjct: 460 PGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVN------------ 507
Query: 500 MSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYED 559
G + R+ V+ G + D +I+ + E+
Sbjct: 508 -PFGFIETPYRK------------VVDGVVSD------------------EIVYLTADEE 536
Query: 560 VREVYVNSD-----DGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLD 614
R V ++ DGR P ++V + G +EY+
Sbjct: 537 DRHVVAQANSPIDADGRFVEPRVLVRR------------------------KAGEVEYVP 572
Query: 615 AEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSL 674
+ E + ++++ P ++ + ++IP+ EH+ A R GA M +Q++
Sbjct: 573 SSEVD----------------YMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAV 616
Query: 675 GL 676
L
Sbjct: 617 PL 618
>sp|P29398|RPOB_THEMA DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT) >gi|2117909|pir||F44466
DNA-directed RNA polymerase (EC 2.7.7.6) beta chain -
Thermotoga maritima (strain MSB8)
>gi|425258|emb|CAA51246.1| (X72695) RNA polymerase, beta
subunit [Thermotoga maritima]
>gi|4980967|gb|AAD35543.1|AE001724_1 (AE001724)
DNA-directed RNA polymerase, beta subunit [Thermotoga
maritima]
Length = 1263
Score = 187 bits (471), Expect = 5e-46
Identities = 161/582 (27%), Positives = 257/582 (43%), Gaps = 124/582 (21%)
Query: 632 EEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSL------------GLGWA 679
EE +++ + ASLIP+ EH+ A R G+ M +Q++ G+ W
Sbjct: 691 EEVDFMDVSTKQPFSVSASLIPFLEHDDASRALMGSNMQRQAVPLLKTEAPLVGTGMEWE 750
Query: 680 NFRI------------------------RVDTRGHLLH---------------------- 693
+ R D G+L++
Sbjct: 751 AAKNSGYVILAEHDGIVKEVDAARVVVHRTDENGNLMYDDKGNPVVDEYRLLKFVRSNQD 810
Query: 694 --YPQIPLVNSR--IMKAVGYEDRPA--------GQNFVVAVLAYHGYNMEDAIIINKAS 741
Q P+VN + K D PA G+N +VA + + GYN EDAI++++
Sbjct: 811 TMINQKPIVNEGDFVKKGDPIADGPATDMGELALGRNILVAFMPWEGYNYEDAILVSQEL 870
Query: 742 IERGLARSTFFRTYEAEEKKY-LGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLI----- 795
+E + S YE + ++ LG + +IP+ + ++ ++LDE+G+I
Sbjct: 871 LEEDVFTSIHIEVYETQARETRLGPEEITADIPNVS------KELLKNLDENGIIRVGAY 924
Query: 796 -FPESKVEGKDVLIGRTSPP-------------RFLEERGLGAVSLQERRETSVAVRPSE 841
+ V + +L+G+ +P ERG R V R
Sbjct: 925 VVSDYGVGSQAILVGKVTPKGEGDTTPEEKIIRSVFGERGRDVKDTSLRLPHGVEGRVIR 984
Query: 842 RGVVDKVIITETGDGT-KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTES 900
V D+ I E G G KLV+V V + +IGDK A RHG KGV+ I+P+EDMP+
Sbjct: 985 VDVYDQNDIAELGAGVLKLVRVYVASRKTLDIGDKLAGRHGNKGVVSNILPKEDMPFLPD 1044
Query: 901 GIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGF 960
G +++NP GIPSRM VGQ+LE G +A L G+ F G E+++ + L E
Sbjct: 1045 GTPVQMVLNPLGIPSRMNVGQILETHLGWLAKLTGKWFATPVFEGAKEDEILRPLYEERK 1104
Query: 961 KH-----------TGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
K G+ ++ DG TG+ F+ + VG +Y +L H+ +KIHARS GP +
Sbjct: 1105 KRGLHLGDDENNPNGKVVLRDGRTGEPFDNPVVVGYMYMLKLIHIAKEKIHARSTGPYSL 1164
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
+ +QP G++ GG R GEME L +GAA L E L +SD +
Sbjct: 1165 IHQQPLGGKSHFGGQRLGEMEVWALEAYGAAHTLAEMLTIKSD---------------DI 1209
Query: 1070 KRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKL 1111
K R++ Y + + I + + +F++L+ EL+ + + +L
Sbjct: 1210 KGRNEAYKAIL-KNMNIPEPGVPESFRVLIKELRGLALDVRL 1250
Score = 82.7 bits (201), Expect = 2e-14
Identities = 54/156 (34%), Positives = 85/156 (53%), Gaps = 20/156 (12%)
Query: 335 DDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNS 394
D KDH NKR+R G+L++ F F++ K IQ ++T I+ + S
Sbjct: 485 DTKDHLGNKRVRTVGELVQREFERLFARAQKAIQERLTL-------------INSLSKVS 531
Query: 395 IRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTSP----LDREQPHF 450
I+ + I+ ++T +SQ +D+ N +S L+H RRV++ L RE F
Sbjct: 532 IQSLI---NIKSIISTVNQFFAMNQLSQFMDQVNPLSELTHKRRVSAVGPGGLRRESKVF 588
Query: 451 EARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQI 486
EAR++H + +GR+CP ETPEG N G + +LA+ A+I
Sbjct: 589 EARNVHYSQYGRLCPIETPEGANIGFITSLAIYAKI 624
>emb|CAC10527.1| (Y16472) DNA-dependent RNA polymerase subunit beta [Clostridium
argentinense]
Length = 907
Score = 187 bits (470), Expect = 6e-46
Identities = 111/319 (34%), Positives = 176/319 (54%), Gaps = 21/319 (6%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKY-LGGQTDKFEIPS 774
G+N + + + GYN EDA+++++ ++ + S YEAE + LG + +IP+
Sbjct: 595 GKNIRIGFITWEGYNYEDAMLVSEELVKDDIFTSVHIEEYEAEARDTKLGPEEITRDIPN 654
Query: 775 PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPR----FLEERGLGAV---SL 827
GE+ + +DE G+I ++V D+L+G+ +P EER L A+
Sbjct: 655 V------GEEALKDIDERGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKA 708
Query: 828 QERRETSVAVRPSERGVVD--KVIITETGDG-----TKLVKVTVRDLRIPEIGDKFASRH 880
+E R+TS+ V E G++ KV E D +LV+ + R +GDK A RH
Sbjct: 709 REVRDTSLRVPHGEAGIIVDVKVFTKENADELPPGVNQLVRCYIAQKRKISVGDKMAGRH 768
Query: 881 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDG 940
G KGVI ++P+EDMP+ G + +NP G+PSRM +GQ+LE G A+ G +
Sbjct: 769 GNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAASELGWHIAT 828
Query: 941 TAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIH 1000
F G + ++ LE+ G+ G+ ++YDG TG+ F+ + VG +Y +LHH+V DKIH
Sbjct: 829 PVFDGAXDTEIEDCLEQAGYNRDGKTVLYDGRTGEAFDNRVTVGYMYILKLHHLVDDKIH 888
Query: 1001 ARSRGPVQVLTKQPTEGRA 1019
ARS GP ++T+QP G+A
Sbjct: 889 ARSTGPYSLVTQQPLGGKA 907
Score = 97.5 bits (239), Expect = 7e-19
Identities = 65/194 (33%), Positives = 102/194 (52%), Gaps = 29/194 (14%)
Query: 297 NNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLF 356
N L+P + + +Y LG L+ G DD DH N+RLR G+LL++ F
Sbjct: 215 NRLIPKHIIKDDIYATVSYELG--------LTYGIGYIDDIDHLGNRRLRSVGELLQNQF 266
Query: 357 RVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGG 416
R+ S++ + ++ +MT Q + I P L I +A G
Sbjct: 267 RIGLSRMERVVKERMTIQDQ----------------DIITPQALIN-IRPVVAAIKEFFG 309
Query: 417 RTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHFEARDLHGTHWGRICPTETPEGP 472
+ +SQ +D+TN +S L+H RR+++ L RE+ FE RD+H +H+GR+CP ETPEGP
Sbjct: 310 SSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGP 369
Query: 473 NCGLVKNLALMAQI 486
N GL+ +L+ A++
Sbjct: 370 NIGLINSLSSYAKV 383
>gi|11465577 unknown; DNA-directed RNA polymerase beta chain [Cyanidium caldarium]
>gi|6466433|gb|AAF13014.1|AF022186_187 (AF022186)
unknown; DNA-directed RNA polymerase beta chain
[Cyanidium caldarium]
Length = 1081
Score = 186 bits (468), Expect = 1e-45
Identities = 124/367 (33%), Positives = 192/367 (51%), Gaps = 36/367 (9%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKY-LGGQTDKFEIPS 774
G++ +VA + + GYN EDA +I+ + L S YE E ++ LG + IP+
Sbjct: 651 GRDVLVAYMPWEGYNYEDAFLISDRLVYEDLYTSIHIEKYEIEARQTKLGPEEITRNIPN 710
Query: 775 PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSP-------PRFLEERGLGAVSL 827
GE + LDE+G++ S VE +L+G+ +P P + +
Sbjct: 711 V------GENSLKQLDENGIVVVSSFVESGSILVGKVTPKGESDQPPESKLLQAIFGEKN 764
Query: 828 QERRETSVAVRPSERG-VVD-KVIITETGDGTK-----LVKVTVRDLRIPEIGDKFASRH 880
++ ++TS+ + RG VVD ++ E GD +V++ V R +IGDK A RH
Sbjct: 765 KDVKDTSLRLPNGTRGRVVDVRIFSREKGDELAVGINYIVRIYVAQKRKIQIGDKMAGRH 824
Query: 881 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRV-- 938
G KG+I I+P++DMP+ +G D+I+NP G+PSRM VGQ+ E I G A +R
Sbjct: 825 GNKGIISKILPRQDMPYLPNGTPVDIILNPLGVPSRMNVGQIFECILGISAFNLKKRFRI 884
Query: 939 ---------DGTAFIGEPEEKLRKELEELGF----KHTGREIMYDGITGKRFEADIFVGV 985
D + + + K + L L + H G+ ++DG +G++F+ + VG
Sbjct: 885 LPFDEMYESDSSRILINQKLKEAQTLTNLDYLFNENHLGKVALFDGRSGEKFDNPVLVGK 944
Query: 986 IYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIE 1045
IY +L H+V DKIH+RS GP ++T+QP G+A++GG R GEME GAA L E
Sbjct: 945 IYMMKLVHLVDDKIHSRSTGPYSLVTQQPLGGKAQQGGQRLGEMEVWAFEAFGAAYALQE 1004
Query: 1046 RLLEESD 1052
L +SD
Sbjct: 1005 LLTIKSD 1011
Score = 119 bits (295), Expect = 2e-25
Identities = 122/485 (25%), Positives = 210/485 (43%), Gaps = 96/485 (19%)
Query: 33 DSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKF--GKIRVGEPEFQEPHGQRKPLYPMDAR 90
+S+ +F+ GL + ++ F I E+ ++ + +P+F +R+
Sbjct: 21 ESFYSFLTEGLAKELNNFSPIIDYTGKLELHLVTNQLVIKKPKFSFEEAKRRDC------ 74
Query: 91 IRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPK 150
+ T S + ++ G +E E+ +GE+P+M +
Sbjct: 75 --SYTISINIVTQLFNKNSGDVKEQ-EILLGEIPLMTQK--------------------- 110
Query: 151 DPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYIAKVFSYR--HGYRALVTVERKK 208
G F+ING+ERVIV+ +P + + +K K F++ A + E K
Sbjct: 111 ---GTFVINGAERVIVNQIVRSPG---IYFNSEMDKNNLKTFNFLIIPNRGAWLKCEIDK 164
Query: 209 DGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQ 268
+ ++++ I K + +ALG++ D + PE ++ NL + T QQ
Sbjct: 165 NDLIWIRIDK-NKKINLSIFFKALGIDHDDLRIKNAFRQPE---FIYKNLNKDENYT-QQ 219
Query: 269 EALEYIGKLVAPGQ--AREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLG------MM 320
EALE + K + PG+ E K + N +G+ +I K L ++
Sbjct: 220 EALEELHKKLFPGEPATSEASTKILYFKFFNPKKYDLGIVGRKKINKKLDLNSPENIRIL 279
Query: 321 ALK--------VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMT 372
++ +I L G + DD DH AN+RL+ G+LL+ + +L + I+ +MT
Sbjct: 280 TIQDILSGINYLINLKFGFGNIDDIDHLANRRLKSVGELLQSQISIGLIRLERLIKERMT 339
Query: 373 KTYQRR-------GEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLD 425
Q K +F I F +S +SQ +D
Sbjct: 340 ICEQSSLVPSALINPKPIFAAIKEFFNSS------------------------QLSQFMD 375
Query: 426 RTNYVSTLSHLRRVTS----PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLA 481
+ N ++ L+H RRV+S L +E+ F RD+H +H+GRICP ETPEGPN GL+ +LA
Sbjct: 376 QVNPLAELTHKRRVSSLGPGGLSKERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLA 435
Query: 482 LMAQI 486
+ A+I
Sbjct: 436 IYARI 440
>sp|P30760|RPOB_MYCLE DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT) >gi|418765|pir||S31145
DNA-directed RNA polymerase (EC 2.7.7.6) beta chain -
Mycobacterium leprae >gi|581334|emb|CAA78668.1| (Z14314)
RNA polymerase beta subunit [Mycobacterium leprae]
Length = 1179
Score = 182 bits (458), Expect = 2e-44
Identities = 147/442 (33%), Positives = 217/442 (48%), Gaps = 73/442 (16%)
Query: 716 GQNFVVAVLAYHGYNM-EDAIIINKASIERGLARSTFFRTYEAEEKKY-LGGQTDKFEIP 773
G+N +VA+ A G EDAII++ +E + S +E + + LG + +IP
Sbjct: 716 GKNLLVAINAVGGSTTNEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIP 775
Query: 774 SPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLE----ERGLGAV---S 826
+ + ++ LDE G++ ++V D+L+G+ +P E ER L A+
Sbjct: 776 NVS------DEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEK 829
Query: 827 LQERRETSVAVRPSERGVVDKVIITETGDG-------TKLVKVTVRDLRIPEIGDKFASR 879
+E R+TS+ V E G V + + D +LV+V V R GDK A R
Sbjct: 830 AREVRDTSLKVPHGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGR 889
Query: 880 HGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVD 939
HG KGVIG I+P EDMP+ G D+I+N HG+P RM VGQ+LE G VA G ++D
Sbjct: 890 HGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAK-SGWKID 948
Query: 940 GTAFIGE-----PEEKLR---------------KELEELGFKHT--------------GR 965
I + PEE L KE E G + G+
Sbjct: 949 VAGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGK 1008
Query: 966 EIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLR 1025
+++DG +G+ F + VG +Y +LHH+V DKIHARS GP ++T+QP G+A+ GG R
Sbjct: 1009 AVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQR 1068
Query: 1026 FGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEER 1085
FGEME + +GAA L E L +SD T R KVY + + E
Sbjct: 1069 FGEMECWAMQAYGAAYTLQELLTIKSDDT---------------VGRVKVYEAIV-KGEN 1112
Query: 1086 ISKVEMSYAFKLLLDELKAMVI 1107
I + + +FK+LL EL+++ +
Sbjct: 1113 IPEPGIPESFKVLLKELQSLCL 1134
Score = 111 bits (274), Expect = 6e-23
Identities = 131/526 (24%), Positives = 224/526 (41%), Gaps = 113/526 (21%)
Query: 4 PTVVEVTPDDL-WIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEV 62
P +++V D W++ W+ R L GL+EV+ E I+ +
Sbjct: 51 PGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVG-----GLEEVLYELSPIEDFSGSMSL 105
Query: 63 KFGKIRVGEPEFQEPHGQRKPLYPMDARIRNLTYSAPLYL--EMIPVIRGIEQEPVEVRI 120
F +P F E + + + +++TY+APL++ E I G E + V +
Sbjct: 106 SFS-----DPRFDEVKAPVE-----ECKDKDMTYAAPLFVTAEFINNNTG-EIKSQTVFM 154
Query: 121 GELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPN---RTL 177
G+ P+M + G FIING+ERV+VS +P
Sbjct: 155 GDFPMMTEK------------------------GTFIINGTERVVVSQLVRSPGVYFDET 190
Query: 178 VEKDERQEKYIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERD 237
++K + + KV R + +R G+ P V +++ALG +
Sbjct: 191 IDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTV----LLKALGWTSE 246
Query: 238 KDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQA-------------- 283
+ I + G +I+ LE + + T + L+ KL PG+
Sbjct: 247 Q-ITERFG----FSEIMRSTLEKDNTVGTDEALLDIYRKL-RPGEPPTKESAQTLLENLF 300
Query: 284 ---REYRLKRA-EYVIDNNLLPHIG-------VSPEDRIRKAYYL-----GMMALKV--- 324
+ Y L R Y ++ L H G ++ ED + YL G + V
Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360
Query: 325 IELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVF 384
+E+ + + DD DH+ N+RLR G+L+++ RV S++ + ++ +MT
Sbjct: 361 VEVPV---ETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVE------- 410
Query: 385 GNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS--- 441
+I P L I +A G + +SQ +D+ N +S L+H RR+++
Sbjct: 411 ---------AITPQTLIN-IRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGP 460
Query: 442 -PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQI 486
L RE+ E RD+H +H+GR+CP ETPEGPN GL+ +L++ A++
Sbjct: 461 GGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARV 506
>gi|11465718 DNA-directed RNA polymerase beta chain [Porphyra purpurea]
>gi|1710671|sp|P51252|RPOB_PORPU DNA-DIRECTED RNA
POLYMERASE BETA CHAIN >gi|2147336|pir||S73173
DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - red
alga (Porphyra purpurea) chloroplast
>gi|1276718|gb|AAC08138.1| (U38804) DNA-directed RNA
polymerase beta chain [Porphyra purpurea]
Length = 1143
Score = 181 bits (455), Expect = 3e-44
Identities = 121/367 (32%), Positives = 192/367 (51%), Gaps = 36/367 (9%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAE-EKKYLGGQTDKFEIPS 774
G+N +VA + + GYN EDA +I++ + + S YE E + LG + EIP+
Sbjct: 695 GRNILVAYMPWEGYNYEDAFLISERLVYEDVYTSIHIEKYEVECRQTKLGPEEITREIPN 754
Query: 775 PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEE-------RGLGAVSL 827
+ + + LD +G++ S VE D+L+G+ +P ++ R +
Sbjct: 755 VS------DHSLKDLDRNGIVVCGSWVEAGDILVGKITPKGEADQLPEGKLLRAIFGEKA 808
Query: 828 QERRETSVAVRPSERGVVD--KVIITETGD----GTK-LVKVTVRDLRIPEIGDKFASRH 880
++ R+TS+ + + +G V +V + GD GT +++V V R ++GDK A RH
Sbjct: 809 RDVRDTSLRLPNAAKGRVVNVRVFTRQKGDELPPGTNAMIRVYVAQKRKIQVGDKMAGRH 868
Query: 881 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDG 940
G KG+I I+P++DMP+ G D+++NP G+PSRM VGQ+ E + G +R
Sbjct: 869 GNKGIISRILPKQDMPYLCDGTPVDIVLNPLGVPSRMNVGQVFECLLGLAGGYLDKRFKI 928
Query: 941 TAF---IGEPEEK--LRKELEELGF----------KHTGREIMYDGITGKRFEADIFVGV 985
F G + + ++L+E +H G+ ++DG TG+ F+ + +G
Sbjct: 929 IPFDEMYGAEASRALVNRKLQEASILTKNKWIFNDQHPGKMQVFDGRTGEPFDNPVTIGR 988
Query: 986 IYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIE 1045
Y +L H+V DKIHARS GP ++T+QP GRA+ GG R GEME L GAA L E
Sbjct: 989 AYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGAAYTLQE 1048
Query: 1046 RLLEESD 1052
L +SD
Sbjct: 1049 LLTVKSD 1055
Score = 110 bits (273), Expect = 7e-23
Identities = 127/517 (24%), Positives = 231/517 (44%), Gaps = 104/517 (20%)
Query: 27 LVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYP 86
LV DS+ F+ GL EV++ F I E++ F + + + P Y
Sbjct: 15 LVEIQRDSFKWFLLEGLTEVLEFFPNISDPTSRLELQL---------FGKEYKIKFPRYS 65
Query: 87 M-DARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQ- 144
+ A+ R+ TYSA +Y+ + I+ LP ++K + LS + L+
Sbjct: 66 VRQAKSRDRTYSAQIYVPAKLTRKDID----------LPSKDQNKTIKSLDLSSNHLQFS 115
Query: 145 ----------------LGEDP-KDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEK- 186
+G+ P G FI++G+ERVI++ +P + ++ K
Sbjct: 116 AEKQIKNKKYKKRLVFIGDLPIMTNRGTFIVSGTERVIINQIIRSPGIYYKQDIDKNGKQ 175
Query: 187 -YIAKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDK------- 238
Y A + S R + + E G +++ I K +++ +RA+GL +++
Sbjct: 176 IYSASLISNRGSW---LKFEIDPKGEIWIRIDKTHKVNAYIF-LRAIGLNKNEIQKGLSK 231
Query: 239 -DIVDAVGNDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQ------------ARE 285
+ + V+++ + ++ + T +EAL + + P + +R
Sbjct: 232 YAFLISASQSYSVKELAKEIGKNDIEEVTDEEALLIVYSKLRPNEPATVPVAKQMLYSRF 291
Query: 286 YRLKRAE------YVIDNNLLPHIG-----VSPEDRIRKAYYLGMMALKVIELSLGKRDE 334
+ KR + Y I+ L +I +SP+D + YL + + + + G D
Sbjct: 292 FDPKRYDLGEVGRYKINKKLGLNIPKTFRVLSPQDILSSIDYL----INIKDKNSGNLD- 346
Query: 335 DDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRF-IRN 393
D DH N+R+R G+LL++ FRV ++L + I+ E+ + +I + N
Sbjct: 347 -DIDHLGNRRVRSVGELLQNQFRVGLNRLERIIR-----------ERMMICDIDSLSLSN 394
Query: 394 SIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPH 449
I P L + G + +SQ +D+TN V+ L+H RR+++ ++++
Sbjct: 395 LINPKPLIASVREFF-------GSSQLSQFMDQTNPVAELTHKRRISALGPGGFNKDRAG 447
Query: 450 FEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQI 486
F RDLH +H+GRICP ETPEGPN GL+ +LA A++
Sbjct: 448 FAVRDLHPSHYGRICPIETPEGPNAGLIGSLATCARV 484
>emb|CAB77428.1| (AL160431) DNA-directed RNA polymerase beta chain [Streptomyces
coelicolor A3(2)]
Length = 1161
Score = 181 bits (454), Expect = 4e-44
Identities = 168/578 (29%), Positives = 265/578 (45%), Gaps = 129/578 (22%)
Query: 636 HLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSL----------GLGW------- 678
++++ P ++ + ++IP+ EH+ A R GA M +Q++ G G
Sbjct: 564 YMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQAVPLIKSESPLVGTGMEYRSAAD 623
Query: 679 -----------------ANFRIRVDTRGHLLHYP--------QIPLVNSRIMKAVG---- 709
A++ + G + Y Q VN +++ A G
Sbjct: 624 AGDVVKAEKAGVVQEVSADYITTTNDDGTYITYRLAKFSRSNQGTSVNQKVIVAEGDRII 683
Query: 710 ----YEDRPA--------GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEA 757
D PA G+N +VA + + G+N EDAII+++ ++ + S +E
Sbjct: 684 EGQVLADGPATENGEMALGKNLLVAFMPWEGHNYEDAIILSQRLVQDDVLSSIHIEEHEV 743
Query: 758 EEKKY-LGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRF 816
+ + LG + +IP+ + E+ LDE G+I ++V D+L+G+ +P
Sbjct: 744 DARDTKLGPEEITRDIPNVS------EEVLADLDERGIIRIGAEVVAGDILVGKVTPKGE 797
Query: 817 LE----ERGLGAV---SLQERRETSVAVRPSERGVVDKVIITETGDG-------TKLVKV 862
E ER L A+ +E R+TS+ V E G V V + + +G +LV+V
Sbjct: 798 TELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDELPPGVNQLVRV 857
Query: 863 TVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQL 922
V R GDK A RHG KGVI I P EDMP+ E G D+I+NP +PSRM GQ+
Sbjct: 858 YVAQKRKITDGDKLAGRHGNKGVISKINPIEDMPFLEDGTPVDIILNPLAVPSRMNPGQV 917
Query: 923 LEAIGGKVAALKGRRVDGTA-------------------------FIGEPEEKLRKELE- 956
LE G +A+ +G V G A F G E++L L+
Sbjct: 918 LEIHLGWLAS-RGWDVSGLAEEWAQRLQVIGADKVEPGTNVATPVFDGAREDELAGLLQH 976
Query: 957 -------ELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQV 1009
E +G+ ++DG +G+ F I VG +Y +LHH+V DK+HARS GP +
Sbjct: 977 TIPNRDGERMVLPSGKARLFDGRSGEPFPEPISVGYMYILKLHHLVDDKLHARSTGPYSM 1036
Query: 1010 LTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALED 1069
+T+QP G+A+ GG RFGEME L +GAA L E L +SD +
Sbjct: 1037 ITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSD---------------DV 1081
Query: 1070 KRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVI 1107
R KVY + + E I + + +FK+L+ E++++ +
Sbjct: 1082 TGRVKVYEAIV-KGENIPEPGIPESFKVLIKEMQSLCL 1118
Score = 94.8 bits (232), Expect = 5e-18
Identities = 125/511 (24%), Positives = 219/511 (42%), Gaps = 104/511 (20%)
Query: 15 WIVMESYWQEKGLVRQHLDS-YNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPE 73
W++ W K V L+S + GL+E+ +E I+ + F R
Sbjct: 47 WLLGNDAW--KARVESALESGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHR----- 99
Query: 74 FQEPHGQRKPLYPMDARIRNLTYSAPLYL--EMIPVIRGIEQEPVEVRIGELPIMLKSKV 131
F+ P + + R+ TY+APL++ E G E + V +G+ P+M
Sbjct: 100 FEPPKNSID-----ECKDRDFTYAAPLFVTAEFTNNETG-EIKSQTVFMGDFPLMTNK-- 151
Query: 132 CRLYGLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPN---RTLVEKDERQEKYI 188
G F+ING+ERV+VS +P + ++K ++ +
Sbjct: 152 ----------------------GTFVINGTERVVVSQLVRSPGVYFDSSIDKTSDKDIFS 189
Query: 189 AKVFSYRHGYRALVTVERKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDP 248
AK+ R + + +E K ++ V I K V +++ALG ++ I++ G
Sbjct: 190 AKIIPSRGAW---LEMEIDKRDMVGVRIDRKRKQSVTV-LLKALGWTTEQ-ILEEFGEYE 244
Query: 249 EVQQILFDNLEDASDITTQQEALEYIGKLVAPGQA-----------------REYRL-KR 290
++ L + Q +AL I + + PG+ + Y L K
Sbjct: 245 SMRATL-----EKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKV 299
Query: 291 AEYVIDNNL-----LPHIGVSPEDRIRKAYYLGMMALKVIELSLGKR------DEDDKDH 339
Y ++ L L ++ +D I YL + E ++G+ + DD DH
Sbjct: 300 GRYKVNKKLGADEPLDAGVLTTDDVIATIKYLVKLHAGETE-TVGESGREIVVETDDIDH 358
Query: 340 YANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDV 399
+ N+R+R G+L+++ R +++ + ++ +MT +I P
Sbjct: 359 FGNRRIRNVGELIQNQVRTGLARMERVVRERMTTQDVE----------------AITPQT 402
Query: 400 LTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHFEARDL 455
L I +A+ G + +SQ +D+ N +S L+H RR+ + L RE+ FE RD+
Sbjct: 403 LIN-IRPVVASIKEFFGTSQLSQFMDQNNPLSGLTHKRRLNALGPGGLSRERAGFEVRDV 461
Query: 456 HGTHWGRICPTETPEGPNCGLVKNLALMAQI 486
H +H+GR+CP ETPEGPN GL+ +LA +I
Sbjct: 462 HPSHYGRMCPIETPEGPNIGLIGSLASYGRI 492
>gi|11467566 RNA polymerase beta-chain [Odontella sinensis]
>gi|1350847|sp|P49466|RPOB_ODOSI DNA-DIRECTED RNA
POLYMERASE BETA CHAIN >gi|7434714|pir||S78371
DNA-directed RNA polymerase (EC 2.7.7.6) beta chain -
Odontella sinensis chloroplast
>gi|1185261|emb|CAA91744.1| (Z67753) RNA polymerase
beta-chain [Odontella sinensis]
Length = 1379
Score = 180 bits (453), Expect = 6e-44
Identities = 136/418 (32%), Positives = 210/418 (49%), Gaps = 51/418 (12%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTY--EAEEKKYLGGQTDKFEIP 773
GQN +VA + + GYN EDAI+IN+ + + S Y E E+ + Q K IP
Sbjct: 939 GQNVLVAYMPWQGYNFEDAILINERLVYEDVFTSIHIERYDIEIEQDDDVSEQITK-NIP 997
Query: 774 SPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEE-------RGLGAVS 826
+ + ++L++DG++ + V+ D+L+G+ E+ R +
Sbjct: 998 NLSF------SEIQNLNDDGIVALGTFVKPGDILVGKIIAKNDSEQLPEAKLLRAIFGAK 1051
Query: 827 LQERRETSVAVRPSERG-VVDKVII---TETGDGTKLVKVTVRDLRIPEIGDKFASRHGQ 882
+ R+TS + + G VVD+V T+ + ++V + +R ++GDK A RHG
Sbjct: 1052 AKGVRDTSFRMPKGKYGRVVDRVTFNRKTKLAYKFEKIQVFIAQIRKIKVGDKIAGRHGN 1111
Query: 883 KGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDGTA 942
KG+I I+P++DMP+ G D+I+NP G+PSRM VGQL E + G RR
Sbjct: 1112 KGIISRILPRQDMPFLPDGTPVDIILNPLGVPSRMNVGQLYECLLGIAGHKLNRRFKILP 1171
Query: 943 F--IGEPEEK---LRKELEELGFKHT----------GREIMYDGITGKRFEADIFVGVIY 987
F + PE + K+L + ++ G+ ++ DG TGK FE I VG Y
Sbjct: 1172 FDEMYGPEVSRILINKKLRQASIENDEAWLFNPYSPGKMVLIDGRTGKEFENPITVGNAY 1231
Query: 988 YQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERL 1047
+L H+V DK+HAR+ GP ++T+QP G+A+ GG RFGEME L G GAA L E L
Sbjct: 1232 MLKLIHLVDDKMHARATGPYSLITQQPLGGKAQHGGQRFGEMEVWALEGFGAAFTLKELL 1291
Query: 1048 LEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAM 1105
+SD + R + V G + I K + +FK+LL EL+++
Sbjct: 1292 TIKSDDMQ--------------GRNETLNAIVKG--QLIPKSGVPESFKVLLQELRSI 1333
Score = 116 bits (288), Expect = 1e-24
Identities = 110/401 (27%), Positives = 174/401 (42%), Gaps = 110/401 (27%)
Query: 283 AREYRL-KRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALK--VIELSLGKRDEDDKDH 339
AR YRL K + I+N L + +RI Y + A+ ++ LS+ K DD DH
Sbjct: 544 ARYYRLGKIGRFQINNRL----NLKLNNRIYTITYEDIFAILDCLVTLSISKTTGDDIDH 599
Query: 340 YANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDV 399
N+R+R G+LL++LFRV F +LV+ + Q+ K + G+ F I +R
Sbjct: 600 LKNRRVRSVGELLQNLFRVGFQRLVRKLGSQINK--RESGQISSFNIIGATVREFF---- 653
Query: 400 LTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHFEARDL 455
G + +SQ +D+TN +S+L+H RR++ LDR++ F RD+
Sbjct: 654 ----------------GSSQLSQYMDQTNPLSSLTHRRRISGLGPGGLDRDRISFAVRDI 697
Query: 456 HGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYLMSLGIVPIEVRRPSPE 515
H +H+GRICP ETPEGPN GL+ +L A++ LG +
Sbjct: 698 HPSHYGRICPIETPEGPNVGLIASLTTCARVN-------------KLGFI-------ETP 737
Query: 516 LWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAYYEDVREVYVNSDDGRVRRP 575
WRV +NG +I T G + + I D +A P
Sbjct: 738 FWRV-INGKVIKT---GNPIY-------LTADIEDFYKIA-------------------P 767
Query: 576 LIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHT 635
I N K LT+ + + Y + ++ + P++V
Sbjct: 768 ADISTNSKNYLTQNLIP-----------------VRY------KQDFITVSPFQV----D 800
Query: 636 HLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGL 676
+ + P ++ + SLIP+ EH+ A R G+ M +QS+ L
Sbjct: 801 FISISPIQVVSVATSLIPFFEHDDANRALMGSNMQRQSVPL 841
>sp|P36440|RPOB_HETCA DNA-DIRECTED RNA POLYMERASE BETA CHAIN >gi|1086227|pir||S41915
DNA-directed RNA polymerase (EC 2.7.7.6) beta chain -
Heterosigma carterae chloroplast
>gi|452825|emb|CAA53450.1| (X75815) RNA polymerase beta
subunit [Heterosigma carterae]
Length = 1116
Score = 180 bits (451), Expect = 1e-43
Identities = 132/420 (31%), Positives = 208/420 (49%), Gaps = 53/420 (12%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAE-EKKYLGGQTDKFEIPS 774
GQN VA + + GYN EDAI+++ + L S E E ++ G Q +IP
Sbjct: 636 GQNLTVAYMPWQGYNYEDAILVSDKLDIQNLFTSIHIEECETEVQQTKTGEQVITSDIPL 695
Query: 775 PTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEE-------RGLGAVSL 827
+ EK ++LDE+G+I V D+L+G+ +P +++ + +
Sbjct: 696 VS------EKNCKNLDENGIIKVGKYVYPGDILVGKITPKGEIDQLPEAKLLKAIFGFKT 749
Query: 828 QERRETSVAVRPSERGVVDKVIITET-------GDGTKLVKVTVRDLRIPEIGDKFASRH 880
+ R++S+ V G V + I + G G+K ++V + + ++GDK A RH
Sbjct: 750 PDMRDSSLRVPGGLSGRVLDIKIFKKPKPGKVFGVGSK-IRVFIAQISKLQVGDKIAGRH 808
Query: 881 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDG 940
G KGVI I+P +DMP+ G D+I+NP G+PSRM VGQ+ E + G +R
Sbjct: 809 GNKGVISRILPHQDMPFLPDGTSVDIILNPLGVPSRMNVGQIFECLLGLAGDQLNKRFKI 868
Query: 941 TAFIGEPEEK-----LRKELEELGFKHT----------GREIMYDGITGKRFEADIFVGV 985
F + + + ++L++ K G+ ++ DG TG++F+ + VG
Sbjct: 869 LPFDEMYQNEASRILINQKLKDAAKKQNKPWLFSAYSPGKILLSDGRTGEKFDNPVLVGR 928
Query: 986 IYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIE 1045
Y +L H+V DKIHARS GP ++T+QP G+++ GG RFGEME L GAA L E
Sbjct: 929 SYILKLAHLVEDKIHARSTGPYSLITQQPVGGKSQNGGQRFGEMEVWALEAFGAAYTLQE 988
Query: 1046 RLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAM 1105
L +SD + R + VCG+E I K + +FK+L+ EL A+
Sbjct: 989 LLTIKSDDMQ--------------GRDDVLNSIVCGQE--IPKSSIPESFKVLMRELNAL 1032
>gi|11467044 RNA polymerase subunit [Euglena gracilis]
>gi|133397|sp|P23579|RPOB_EUGGR DNA-DIRECTED RNA
POLYMERASE BETA CHAIN >gi|66973|pir||RNEGB DNA-directed
RNA polymerase (EC 2.7.7.6) beta chain - Euglena gracilis
chloroplast >gi|311709|emb|CAA35052.1| (X17191) RNA
polymerase subunit [Euglena gracilis]
>gi|415794|emb|CAA50138.1| (X70810) RNA polymerase
subunit [Euglena gracilis]
Length = 1082
Score = 170 bits (426), Expect = 9e-41
Identities = 129/419 (30%), Positives = 208/419 (48%), Gaps = 50/419 (11%)
Query: 716 GQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEA----EEKKYLGGQTDKFE 771
G+N +VA L + GYN EDA+II++ + + S + ++ +EKK G+
Sbjct: 682 GKNVLVAYLGWEGYNFEDAVIISERLVFEDIFTSIHMKKFKTFIVNDEKK---GENISMF 738
Query: 772 IPSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSL---Q 828
IP+ ++ K ++L +G+I S+++ +DVLIGR + ++ +
Sbjct: 739 IPNASL------KTIKNLKNNGIIKIGSEIKAQDVLIGRIKVKLKNTPKNKMLIAFFGNK 792
Query: 829 ERRETSVAVRPSERGVVDKV-IITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIG 887
R++ S+ S G+V V I+ + + + L+ V + R +IGDK A RHG KG+I
Sbjct: 793 VRKDVSLRSPRSLVGIVTSVEILCKKSNCSVLIHVAEK--RRIQIGDKIAGRHGNKGIIS 850
Query: 888 LIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRR---------- 937
IVP DMP+ G D+I+NP GIPSRM VGQ+ E++ + R
Sbjct: 851 KIVPSIDMPFLPDGTPVDMILNPLGIPSRMNVGQVFESLLNLSSLFLKERYKIQPFDEVQ 910
Query: 938 --VDGTAFIGEPEEKLRKELEE---LGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLH 992
++ +F+ + + RK ++ + G+ +YDG + F+ + G Y +L
Sbjct: 911 TSMNSKSFVYKKLNEARKRTKKDWLFNPNYPGKAFLYDGRNCRPFDHPVAFGYAYILKLI 970
Query: 993 HMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESD 1052
HMV DKIHAR GP +T+QP G+++ GG RFGEME + G GAA LL E L +SD
Sbjct: 971 HMVKDKIHARVTGPYSSVTQQPLRGKSKNGGQRFGEMEVWAIEGFGAAYLLQELLTIKSD 1030
Query: 1053 KTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKL 1111
R ++ + G SK + AFKL + E++++ I K+
Sbjct: 1031 DVL--------------NRSEALFSLING--TYFSKPNIPEAFKLFILEMQSLCIDIKI 1073
Score = 97.5 bits (239), Expect = 7e-19
Identities = 91/362 (25%), Positives = 164/362 (45%), Gaps = 70/362 (19%)
Query: 154 GYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYIAKVFSYRHGYRALVTVERKKDGILY 213
G FI NG++R++V+ + I EK+ + A + + + +T + +D ++
Sbjct: 105 GTFIFNGNKRIMVN-QIIRSPGVYFEKNRYNDSIFATLIPT---FGSWLTFKIDQDEGIF 160
Query: 214 VGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDITTQQEALEY 273
V + + + + ++ LGL R K + NDP I + L+++ + E E+
Sbjct: 161 VKVDKIKTAIPLINFLKCLGLSRKKFFLYL--NDP----IFIETLQESESYGIRLEFFEF 214
Query: 274 IGKLVAP-------GQAREY-----------------------RLKRAEYVIDNNLLPHI 303
K+ P G AR++ ++ R+E+ N L
Sbjct: 215 Y-KIFFPNEVNVRFGNARKFLRSKFMDPRKYDLGEVGRFRVNTKIYRSEFFQSNRTL--- 270
Query: 304 GVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQL 363
PED + A+YL IEL G D+ D NK +R G+LL+ FR+ ++L
Sbjct: 271 --QPEDVLGIAHYL-------IELKKGMIPFDEIDDLKNKLVRSIGELLQSQFRIILNEL 321
Query: 364 VKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQL 423
++ ++ Y+ EK + RF + +T RI + +SQL
Sbjct: 322 ESSLKEKLIFLYKNPSEKTF--RLSRFFNSYF----ITNRIRKFFSVNP-------LSQL 368
Query: 424 LDRTNYVSTLSHLRRVT----SPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKN 479
LD TN +S L+H R+++ + L++E+ + R+++ + +GR+CP ET EG N GL+ +
Sbjct: 369 LDDTNSLSELTHKRKLSPFGPNGLNKERTKLDVREINTSQYGRVCPIETSEGKNAGLILS 428
Query: 480 LA 481
LA
Sbjct: 429 LA 430
>sp|Q9Z9A0|RPOB_CHLPN DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT) >gi|7434705|pir||D72122 RNA
polymerase beta - Chlamydophila pneumoniae (strain
CWL029) >gi|4376339|gb|AAD18234.1| (AE001593) RNA
Polymerase Beta [Chlamydophila pneumoniae CWL029]
Length = 1252
Score = 170 bits (426), Expect = 9e-41
Identities = 88/193 (45%), Positives = 120/193 (61%)
Query: 860 VKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTV 919
VKV V R ++GDK A RHG KGV+ IVP+ DMP+ +G +I+NP G+PSRM +
Sbjct: 1012 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLSNGETVQMILNPLGVPSRMNL 1071
Query: 920 GQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEA 979
GQ+LE G A G V F G PE+++ + E G G+ +YDG TG+RF+
Sbjct: 1072 GQVLETHLGYAAKTAGIYVKTPVFEGFPEQRIWDMMIEQGLPEDGKSFLYDGKTGERFDN 1131
Query: 980 DIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGA 1039
+ +G IY +L H++ADKIHARS GP ++T+QP G+A+ GG RFGEME L +G
Sbjct: 1132 KVVIGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGV 1191
Query: 1040 AMLLIERLLEESD 1052
A +L E L +SD
Sbjct: 1192 AHMLQEILTVKSD 1204
Score = 132 bits (329), Expect = 2e-29
Identities = 153/605 (25%), Positives = 268/605 (44%), Gaps = 92/605 (15%)
Query: 281 GQAREYRLKRA-EYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLG--KRDEDDK 337
G+ Y+L R + ID+ L + + ED I YL I L +G K DD
Sbjct: 336 GRVGRYKLNRKLGFSIDDEALSQVTLRKEDVIGALKYL-------IRLKMGDEKACVDDI 388
Query: 338 DHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRP 397
DH AN+R+R G+L+++ R +++ K ++ +M N+ F +++ P
Sbjct: 389 DHLANRRVRSVGELIQNQCRSGLARMEKIVRERM--------------NLFDFSSDTLTP 434
Query: 398 DVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHFEAR 453
+ A + GR+ +SQ +D+TN V+ L+H RR+++ L+RE+ FE R
Sbjct: 435 GKVVSAKGLASVLKDF-FGRSQLSQFMDQTNPVAELTHKRRLSALGPGGLNRERAGFEVR 493
Query: 454 DLHGTHWGRICPTETPEGPNCGLVKNLALMAQIT----TAVPEEEVKEYLMSLGIVPIEV 509
D+H +H+GRICP ETPEGPN GL+ +L+ A+I P V++ GIV E+
Sbjct: 494 DVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRIVRD-----GIVTDEI 548
Query: 510 RRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKI--SDIINVAYYEDVREVYVNS 567
+ ++ + ++++ E + R +G+ +D V + + + V+
Sbjct: 549 EYMTADVEEECVIAQASASLDEYNMFTEPVCWVRYAGEAFEADTSTVTHMDVSPKQLVSI 608
Query: 568 DDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWP 627
G + P + ++ L ++Q LK ++ +G A ++ A V
Sbjct: 609 VTGLI--PFLEHDDANRALMGSNMQRQAVPLLK-TEAPVVGTGLECRAAKDSGAIV---- 661
Query: 628 WEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDT 687
V EE ++ + ++ +HN + TY +S
Sbjct: 662 --VAEEDGVVDFVDG------YKVVVAAKHNPTIKRTYHLKKFLRS-------------N 700
Query: 688 RGHLLHYPQIPLVNSRIMKAVGYEDRPA--------GQNFVVAVLAYHGYNMEDAIIINK 739
G ++ + V I K D PA G+N +VA + ++GYN EDAIII++
Sbjct: 701 SGTCINQQPLCAVGDVITKGDVIADGPATDRGELALGKNVLVAFMPWYGYNFEDAIIISE 760
Query: 740 ASIERGLARSTFFRTYE--AEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFP 797
I S + +E A + K LG + +IP+ + ++ +L EDG+I
Sbjct: 761 KLIREDAYTSIYIEEFELTARDTK-LGKEEITRDIPNVS------DEVLANLGEDGIIRI 813
Query: 798 ESKVEGKDVLIGRTSPPRFL----EERGLGAV---SLQERRETSVAVRPSERGVVDKVII 850
++V+ D+L+G+ +P EER L A+ + ++ S+ V P GVV V +
Sbjct: 814 GAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKV 873
Query: 851 TETGD 855
D
Sbjct: 874 FSRKD 878
>pir||F81548 DNA-directed RNA polymerase, beta chain CP0694 [imported] -
Chlamydophila pneumoniae (strain AR39)
>gi|7189608|gb|AAF38502.1| (AE002228) DNA-directed RNA
polymerase, beta subunit [Chlamydophila pneumoniae AR39]
Length = 1262
Score = 170 bits (426), Expect = 9e-41
Identities = 88/193 (45%), Positives = 120/193 (61%)
Query: 860 VKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTV 919
VKV V R ++GDK A RHG KGV+ IVP+ DMP+ +G +I+NP G+PSRM +
Sbjct: 1022 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLSNGETVQMILNPLGVPSRMNL 1081
Query: 920 GQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEA 979
GQ+LE G A G V F G PE+++ + E G G+ +YDG TG+RF+
Sbjct: 1082 GQVLETHLGYAAKTAGIYVKTPVFEGFPEQRIWDMMIEQGLPEDGKSFLYDGKTGERFDN 1141
Query: 980 DIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGA 1039
+ +G IY +L H++ADKIHARS GP ++T+QP G+A+ GG RFGEME L +G
Sbjct: 1142 KVVIGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGV 1201
Query: 1040 AMLLIERLLEESD 1052
A +L E L +SD
Sbjct: 1202 AHMLQEILTVKSD 1214
Score = 132 bits (329), Expect = 2e-29
Identities = 153/605 (25%), Positives = 268/605 (44%), Gaps = 92/605 (15%)
Query: 281 GQAREYRLKRA-EYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLG--KRDEDDK 337
G+ Y+L R + ID+ L + + ED I YL I L +G K DD
Sbjct: 346 GRVGRYKLNRKLGFSIDDEALSQVTLRKEDVIGALKYL-------IRLKMGDEKACVDDI 398
Query: 338 DHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRP 397
DH AN+R+R G+L+++ R +++ K ++ +M N+ F +++ P
Sbjct: 399 DHLANRRVRSVGELIQNQCRSGLARMEKIVRERM--------------NLFDFSSDTLTP 444
Query: 398 DVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHFEAR 453
+ A + GR+ +SQ +D+TN V+ L+H RR+++ L+RE+ FE R
Sbjct: 445 GKVVSAKGLASVLKDF-FGRSQLSQFMDQTNPVAELTHKRRLSALGPGGLNRERAGFEVR 503
Query: 454 DLHGTHWGRICPTETPEGPNCGLVKNLALMAQIT----TAVPEEEVKEYLMSLGIVPIEV 509
D+H +H+GRICP ETPEGPN GL+ +L+ A+I P V++ GIV E+
Sbjct: 504 DVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRIVRD-----GIVTDEI 558
Query: 510 RRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKI--SDIINVAYYEDVREVYVNS 567
+ ++ + ++++ E + R +G+ +D V + + + V+
Sbjct: 559 EYMTADVEEECVIAQASASLDEYNMFTEPVCWVRYAGEAFEADTSTVTHMDVSPKQLVSI 618
Query: 568 DDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWP 627
G + P + ++ L ++Q LK ++ +G A ++ A V
Sbjct: 619 VTGLI--PFLEHDDANRALMGSNMQRQAVPLLK-TEAPVVGTGLECRAAKDSGAIV---- 671
Query: 628 WEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDT 687
V EE ++ + ++ +HN + TY +S
Sbjct: 672 --VAEEDGVVDFVDG------YKVVVAAKHNPTIKRTYHLKKFLRS-------------N 710
Query: 688 RGHLLHYPQIPLVNSRIMKAVGYEDRPA--------GQNFVVAVLAYHGYNMEDAIIINK 739
G ++ + V I K D PA G+N +VA + ++GYN EDAIII++
Sbjct: 711 SGTCINQQPLCAVGDVITKGDVIADGPATDRGELALGKNVLVAFMPWYGYNFEDAIIISE 770
Query: 740 ASIERGLARSTFFRTYE--AEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFP 797
I S + +E A + K LG + +IP+ + ++ +L EDG+I
Sbjct: 771 KLIREDAYTSIYIEEFELTARDTK-LGKEEITRDIPNVS------DEVLANLGEDGIIRI 823
Query: 798 ESKVEGKDVLIGRTSPPRFL----EERGLGAV---SLQERRETSVAVRPSERGVVDKVII 850
++V+ D+L+G+ +P EER L A+ + ++ S+ V P GVV V +
Sbjct: 824 GAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKV 883
Query: 851 TETGD 855
D
Sbjct: 884 FSRKD 888
>dbj|BAA98291.1| (AP002545) RNA polymerase beta [Chlamydophila pneumoniae J138]
Length = 1252
Score = 170 bits (426), Expect = 9e-41
Identities = 88/193 (45%), Positives = 120/193 (61%)
Query: 860 VKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTV 919
VKV V R ++GDK A RHG KGV+ IVP+ DMP+ +G +I+NP G+PSRM +
Sbjct: 1012 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLSNGETVQMILNPLGVPSRMNL 1071
Query: 920 GQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEA 979
GQ+LE G A G V F G PE+++ + E G G+ +YDG TG+RF+
Sbjct: 1072 GQVLETHLGYAAKTAGIYVKTPVFEGFPEQRIWDMMIEQGLPEDGKSFLYDGKTGERFDN 1131
Query: 980 DIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGA 1039
+ +G IY +L H++ADKIHARS GP ++T+QP G+A+ GG RFGEME L +G
Sbjct: 1132 KVVIGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGV 1191
Query: 1040 AMLLIERLLEESD 1052
A +L E L +SD
Sbjct: 1192 AHMLQEILTVKSD 1204
Score = 132 bits (329), Expect = 2e-29
Identities = 153/605 (25%), Positives = 268/605 (44%), Gaps = 92/605 (15%)
Query: 281 GQAREYRLKRA-EYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLG--KRDEDDK 337
G+ Y+L R + ID+ L + + ED I YL I L +G K DD
Sbjct: 336 GRVGRYKLNRKLGFSIDDEALSQVTLRKEDVIGALKYL-------IRLKMGDEKACVDDI 388
Query: 338 DHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRP 397
DH AN+R+R G+L+++ R +++ K ++ +M N+ F +++ P
Sbjct: 389 DHLANRRVRSVGELIQNQCRSGLARMEKIVRERM--------------NLFDFSSDTLTP 434
Query: 398 DVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHFEAR 453
+ A + GR+ +SQ +D+TN V+ L+H RR+++ L+RE+ FE R
Sbjct: 435 GKVVSAKGLASVLKDF-FGRSQLSQFMDQTNPVAELTHKRRLSALGPGGLNRERAGFEVR 493
Query: 454 DLHGTHWGRICPTETPEGPNCGLVKNLALMAQIT----TAVPEEEVKEYLMSLGIVPIEV 509
D+H +H+GRICP ETPEGPN GL+ +L+ A+I P V++ GIV E+
Sbjct: 494 DVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRIVRD-----GIVTDEI 548
Query: 510 RRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKI--SDIINVAYYEDVREVYVNS 567
+ ++ + ++++ E + R +G+ +D V + + + V+
Sbjct: 549 EYMTADVEEECVIAQASASLDEYNMFTEPVCWVRYAGEAFEADTSTVTHMDVSPKQLVSI 608
Query: 568 DDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWP 627
G + P + ++ L ++Q LK ++ +G A ++ A V
Sbjct: 609 VTGLI--PFLEHDDANRALMGSNMQRQAVPLLK-TEAPVVGTGLECRAAKDSGAIV---- 661
Query: 628 WEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDT 687
V EE ++ + ++ +HN + TY +S
Sbjct: 662 --VAEEDGVVDFVDG------YKVVVAAKHNPTIKRTYHLKKFLRS-------------N 700
Query: 688 RGHLLHYPQIPLVNSRIMKAVGYEDRPA--------GQNFVVAVLAYHGYNMEDAIIINK 739
G ++ + V I K D PA G+N +VA + ++GYN EDAIII++
Sbjct: 701 SGTCINQQPLCAVGDVITKGDVIADGPATDRGELALGKNVLVAFMPWYGYNFEDAIIISE 760
Query: 740 ASIERGLARSTFFRTYE--AEEKKYLGGQTDKFEIPSPTVRGYRGEKYYRHLDEDGLIFP 797
I S + +E A + K LG + +IP+ + ++ +L EDG+I
Sbjct: 761 KLIREDAYTSIYIEEFELTARDTK-LGKEEITRDIPNVS------DEVLANLGEDGIIRI 813
Query: 798 ESKVEGKDVLIGRTSPPRFL----EERGLGAV---SLQERRETSVAVRPSERGVVDKVII 850
++V+ D+L+G+ +P EER L A+ + ++ S+ V P GVV V +
Sbjct: 814 GAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKV 873
Query: 851 TETGD 855
D
Sbjct: 874 FSRKD 878
>sp|O84317|RPOB_CHLTR DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT) >gi|7434706|pir||H71529
DNA-directed RNA polymerase (EC 2.7.7.6) beta chain -
Chlamydia trachomatis (serotype D, strain UW3/Cx)
>gi|3328732|gb|AAC67908.1| (AE001304) RNA Polymerase Beta
[Chlamydia trachomatis]
Length = 1252
Score = 168 bits (421), Expect = 3e-40
Identities = 88/193 (45%), Positives = 120/193 (61%)
Query: 860 VKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTV 919
VKV V R ++GDK A RHG KGV+ IVP+ DMP+ +G +I+NP G+PSRM +
Sbjct: 1012 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNL 1071
Query: 920 GQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEA 979
GQ+LE G A G V F G PE ++ + E G G+ ++DG TG+RF++
Sbjct: 1072 GQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMMIEQGLPEDGKSYLFDGKTGERFDS 1131
Query: 980 DIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGA 1039
+ VG IY +L H++ADKIHARS GP ++T+QP G+A+ GG RFGEME L +G
Sbjct: 1132 KVVVGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGV 1191
Query: 1040 AMLLIERLLEESD 1052
A +L E L +SD
Sbjct: 1192 AHMLQEILTVKSD 1204
Score = 100 bits (247), Expect = 8e-20
Identities = 68/213 (31%), Positives = 115/213 (53%), Gaps = 29/213 (13%)
Query: 281 GQAREYRL-KRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLG--KRDEDDK 337
G+ Y+L K+ + +D+ L + + ED I YL I L +G K DD
Sbjct: 336 GRVGRYKLNKKLGFPLDDETLSQVTLRKEDVIGALKYL-------IRLRMGDEKTSIDDI 388
Query: 338 DHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRP 397
DH AN+R+R G+L+++ R +++ K ++ +M N+ F +++ P
Sbjct: 389 DHLANRRVRSVGELIQNHCRSGLARMEKIVRERM--------------NLFDFSSDTLTP 434
Query: 398 DVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHFEAR 453
+ + ++ R+ +SQ +D+TN V+ L+H RR+++ L+RE+ FE R
Sbjct: 435 GKIISA-KGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRLSALGPGGLNRERAGFEVR 493
Query: 454 DLHGTHWGRICPTETPEGPNCGLVKNLALMAQI 486
D+H +H+GRICP ETPEGPN GL+ +L+ A+I
Sbjct: 494 DVHASHYGRICPIETPEGPNIGLITSLSSFAKI 526
>sp|P56869|RPOB_CHLMU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT) >gi|11261154|pir||G81686
DNA-directed RNA polymerase, beta chain TC0589 [imported]
- Chlamydia muridarum (strain Nigg)
>gi|7190626|gb|AAF39421.1| (AE002327) DNA-directed RNA
polymerase, beta subunit [Chlamydia muridarum]
Length = 1252
Score = 168 bits (421), Expect = 3e-40
Identities = 88/193 (45%), Positives = 120/193 (61%)
Query: 860 VKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTV 919
VKV V R ++GDK A RHG KGV+ IVP+ DMP+ +G +I+NP G+PSRM +
Sbjct: 1012 VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNL 1071
Query: 920 GQLLEAIGGKVAALKGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEA 979
GQ+LE G A G V F G PE ++ + E G G+ ++DG TG+RF++
Sbjct: 1072 GQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMMIEQGLPEDGKSYLFDGKTGERFDS 1131
Query: 980 DIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGA 1039
+ VG IY +L H++ADKIHARS GP ++T+QP G+A+ GG RFGEME L +G
Sbjct: 1132 KVVVGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGV 1191
Query: 1040 AMLLIERLLEESD 1052
A +L E L +SD
Sbjct: 1192 AHMLQEILTVKSD 1204
Score = 100 bits (247), Expect = 8e-20
Identities = 68/213 (31%), Positives = 115/213 (53%), Gaps = 29/213 (13%)
Query: 281 GQAREYRL-KRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLG--KRDEDDK 337
G+ Y+L K+ + +D+ L + + ED I YL I L +G K DD
Sbjct: 336 GRVGRYKLNKKLGFPLDDETLSQVTLRKEDVIGALKYL-------IRLRMGDEKTSIDDI 388
Query: 338 DHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRP 397
DH AN+R+R G+L+++ R +++ K ++ +M N+ F +++ P
Sbjct: 389 DHLANRRVRSVGELIQNHCRSGLARMEKIVRERM--------------NLFDFSSDTLTP 434
Query: 398 DVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHFEAR 453
+ + ++ R+ +SQ +D+TN V+ L+H RR+++ L+RE+ FE R
Sbjct: 435 GKIISA-KGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRLSALGPGGLNRERAGFEVR 493
Query: 454 DLHGTHWGRICPTETPEGPNCGLVKNLALMAQI 486
D+H +H+GRICP ETPEGPN GL+ +L+ A+I
Sbjct: 494 DVHSSHYGRICPIETPEGPNIGLITSLSSFAKI 526
>gi|9631469 ORF MSV155 putative RNA polymerase second largest subunit cowpox
RPO132 homolog (vaccinia A24R), similar to SW:P17474
[Melanoplus sanguinipes entomopoxvirus]
>gi|11261321|pir||T28316 ORF MSV155 probable RNA
polymerase second largest subunit cowpox RPO132 homolog
(vaccinia A24R) - Melanoplus sanguinipes entomopoxvirus
>gi|4049822|gb|AAC97782.1| (AF063866) ORF MSV155 putative
RNA polymerase second largest subunit cowpox RPO132
homolog (vaccinia A24R), similar to SW:P17474 [Melanoplus
sanguinipes entomopoxvirus]
Length = 1190
Score = 150 bits (375), Expect = 8e-35
Identities = 210/889 (23%), Positives = 358/889 (39%), Gaps = 131/889 (14%)
Query: 297 NNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLF 356
+N LPHI RI K YL + + I DKD+ A +R+ A D+ + +
Sbjct: 319 SNFLPHI---TNGRINKGMYLISIFRQFIVGMFQPDIYPDKDNLATRRISTAADIFESII 375
Query: 357 RVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALAT--GAWP 414
+ + L+ I+ ++ E + I++ I N++ L +I A
Sbjct: 376 KSSIDTLLYQIK-------EKSNEFKIESKINQNINNALSQIKLIPQITPAFNNFFNMQD 428
Query: 415 GGRTGVSQLLDRTNYVSTLSHLRRVTSPLDRE-QPHFEARDLHGTHWGRICPTETPE-GP 472
+ V ++ ++N+ + V E EAR+LH + G + +TP+ G
Sbjct: 429 TKNSDVVKISTKSNWQEPIIVSNAVMRGSSIELTKSLEARNLHESTIGVLDIYDTPDHGS 488
Query: 473 NCGLVKNLAL---MAQITTAVPEE---EVKEYLMSLGIVPIEVRRPSPELWRVYLNGVII 526
N GL+K L + ++ T + E EV EY+++ + + +NGVII
Sbjct: 489 NAGLIKRLTIGTIISHHTLKIRERIFNEVNEYILTYAKTNNIINK---------INGVII 539
Query: 527 GTIEDG---------KALVERIKKDRRSGKISDI----------INVAYYEDVREVYV-- 565
IE+ ++ V++ KD + KIS+I I + + ++++ V
Sbjct: 540 SIIEESSEFYVTSIDQSKVDQFVKDIKLAKISNIFCTNDIGIEVIPIHEMDKIKKINVPT 599
Query: 566 --------NSDDGRVRRPLIIVENG-----KPKLTKEHVQAIKEGRLKWSDLVRMGVIEY 612
N + R +P+ IVENG K K+ K + + + LK++D +IE+
Sbjct: 600 NRYFQIRINVGNRRALQPMFIVENGILNLDKYKIDKNEIMSFSDIMLKYND-----IIEF 654
Query: 613 LDAEEEENAYVA-------MWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTY 665
+D + + + + E + ++ L S + A R T+
Sbjct: 655 VDVGQALYSRICNSIKEFKQYSLEFRKTIQYVRLPNYIYFSQLVSCMHDVGKMAGVRGTF 714
Query: 666 GAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLA 725
GA K + N + ++ +L Q V + G GQ+ +V +
Sbjct: 715 GAAQYKHIITGPQDNILNKFESCTYLSFPLQKSCVTNIPKDISGISKNGMGQHILVGFFS 774
Query: 726 YHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKY 785
Y+ N+ED +I+NK S+E G+ AE + PSP
Sbjct: 775 YNK-NIEDGVIVNKRSVENGMLSVITLNAIVAEVSDIQINNNN----PSPD----NANNN 825
Query: 786 YRHLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVV 845
Y ++ GL + + D L R P++ E L ++ E V+ P+
Sbjct: 826 YSKINVMGLPDVGTVMVKNDALY-RCLKPKYKETDD--NTRLFDKSEPYVSNYPA----- 877
Query: 846 DKVIITETGDGTKLVKVTV--RDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIV 903
V+ GT ++KV + R IGDK A + QK + I+ + ++P+T+ G+
Sbjct: 878 --VVERTRKQGTDIIKVEILLSSYRRLAIGDKLA-KSVQKVTVADILDESELPYTKDGLR 934
Query: 904 PDLIVNPHGIPSRMTVGQLLEA-IGGKVAALKGRRVDGTAFIGEPE----------EKLR 952
PDLI N I SR T +A + + + + T +I P E +R
Sbjct: 935 PDLIFNSTSITSRKTFPMYFDAMLTNMFSLIPYDENNNTRYINYPTYTDMTSTDIIEYIR 994
Query: 953 KEL---------EELGFKHTGREIMYDGITGKRFE-------ADIFVGVIYYQRLHHMVA 996
++ EEL R ++Y+ T K E FV I + RL M A
Sbjct: 995 NKIKPLYPNISDEELNDIVYCRHVIYNPDTHKPMELVENGKKTKAFVAPILFSRLSQMSA 1054
Query: 997 DKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDK-TE 1055
DK+ R+RG + QP G+ + GG++ GEME DV + + + +E L + S+K
Sbjct: 1055 DKLSVRNRGRLDKYG-QPPSGKKKGGGIKIGEMEVDVFLTYSVPSITLELLSDPSEKYLP 1113
Query: 1056 VWVCENCGHIA-----LEDKRRHKVYCPVCGEEERISKVEMSYAFKLLL 1099
C NCG A LE KR + C G +I + Y+ K+ L
Sbjct: 1114 AMACSNCGIFATYEDSLEIKRWKCLQCENIGLSPKIISFRLPYSTKMFL 1162
>gb|AAA82612.1| (U33419) RNA polymerase subunit [orf virus]
Length = 1162
Score = 150 bits (374), Expect = 1e-34
Identities = 210/914 (22%), Positives = 365/914 (38%), Gaps = 111/914 (12%)
Query: 269 EALEYIGKLVAPGQAREYRLKRAE---YVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVI 325
+ EY+ L+ A++ E Y + +N LPH+ S K YL + K++
Sbjct: 270 DVAEYVNGLMPAEHAKQKSTLSKEEFRYEMLSNFLPHMQDSANQL--KGLYLLSLVRKMV 327
Query: 326 ELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFG 385
+D R+ G + L + +I+ + ++ RG V
Sbjct: 328 FCVFFPETVPGRDSLVCHRVYTYGRYFEALAMDELETYIGNIRNDILANHKNRGTCTV-- 385
Query: 386 NIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTN----YVSTLSHLRRVTS 441
NIH + T HA A A G+ S RT+ ++ ++S R V
Sbjct: 386 NIHV---------LTTPGFNHAFA--ALLSGKFRKSDGSFRTHPHYSWMQSISIPRSVGF 434
Query: 442 PLDREQ--PHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQI----TTAVPEEEV 495
++ + F+ R + +G C ++ PE G AL A++ TA E
Sbjct: 435 YPEQVKISKMFKVRMYPTSQYGFFCASDVPERGAAGRAHLAALRARLHIEHATADFVELT 494
Query: 496 KEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDG--KALVERIKKDRRSGKISDI-I 552
K + P + V + ++ ++ A V +++ +R G + I
Sbjct: 495 KRVCDYVRSYPARDISYFETGFAVTVENALVASLNPAIVDAFVLDLRRRKRVGFFGNREI 554
Query: 553 NVAYYEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKE-GRLKWSDLVRM--GV 609
VA + + EV +N GR+ RPL++VENG + E + ++ + +SD++R V
Sbjct: 555 GVALVQRMNEVRINFGAGRLIRPLLVVENGVLVMDAEGQRLERDLAAMTFSDVLREFPHV 614
Query: 610 IEYLDAEEEENAYVA----MWPWEVTEEHTHLELM------PAAILGLPASLIPYPEHNA 659
IE +D E+ + V + EE L L+ P + GL A P+ A
Sbjct: 615 IEIVDVEQFSFSNVCDSVQRFRTLPPEERRALRLLRLPGRVPRRVRGLLARG-HQPQLRA 673
Query: 660 APRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNF 719
G AKQ++ A+ R +VD HL+ + + P+V S+ ++ D G +
Sbjct: 674 GA--ILGCAQAKQAISCLTADLRNKVDNGIHLM-FAERPIVVSKALETSKIADNCFGHHV 730
Query: 720 VVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRG 779
+A++++ G N ED II+ + ERG + Y+ E + F P
Sbjct: 731 TIALMSFRGMNQEDGIILKRQFAERGGLDILTCKKYQVEI------PLENFNKPERV--- 781
Query: 780 YRGEKYYRHLDEDGLIFPESKVEGKDVLI----GRTSPPRFLEERGLGAVSLQERRETSV 835
Y +D + + + +E D + RT F+ + + + R ++
Sbjct: 782 --ASAAYSKIDVNAWVRLNAFLEQGDAIARNVSSRTLDDDFVADNQISFDIAEATRTSTP 839
Query: 836 AVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPE----IGDKFASRHGQKGVIGLIVP 891
+ + D KV VR L +PE +GDKF +R QKG + +
Sbjct: 840 RAWRLQADLTD--------------KVKVRALTVPERRAILGDKFTTRTSQKGTVAYVAD 885
Query: 892 QEDMPWTESGI--VPDLIVNPHGIPSRMTVGQLLEAI----GGKVAALKGRRVDGTAFIG 945
+ ++P+ E+G+ +PD+I+N I SR T+ L+E I G + +G +
Sbjct: 886 ETELPYDENGMHPIPDVIINSTSIFSRKTLSMLMEVILTTAYGTQSLRRGTAPTARSASP 945
Query: 946 EPEEKLRKELEELGFKH-------TGR--------------EIMYDGITGKRFEADIFVG 984
P + + + GR +++D + F A +F G
Sbjct: 946 APTRPTSQTYIAVAPRRCYALSHPRGRSGPTPSSEHRVFCERVLFDPRPTEPFAARVFFG 1005
Query: 985 VIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLI 1044
+YY RL H+ DK R RG EGR R ++ GEM+ D ++ HGAA +
Sbjct: 1006 PLYYLRLRHLTLDKATVRCRGAQDQAHPAANEGR-RRPRIKIGEMDADSMISHGAAFTVA 1064
Query: 1045 ERLLE-ESDKTEVWVCENCGHIALEDKRRHK-VYCPVCGEEERISKVEMSYAFKLLLDEL 1102
E L D EV VCENCG IA H + C ++++ ++ K+ +
Sbjct: 1065 EILARLREDAQEVLVCENCGDIAARLNGTHVCIRCSKMSLSPVCTRMDSTHVSKVFHRTM 1124
Query: 1103 KAMVIRPKLNLTER 1116
K I+ ++ ++
Sbjct: 1125 KRAAIKIRVEFEKQ 1138
>pir||A81236 DNA-directed RNA polymerase, beta chain NMB0132 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7225349|gb|AAF40591.1| (AE002371) DNA-directed RNA
polymerase, beta subunit [Neisseria meningitidis MC58]
Length = 1394
Score = 148 bits (369), Expect = 4e-34
Identities = 111/349 (31%), Positives = 166/349 (46%), Gaps = 90/349 (25%)
Query: 825 VSLQERRETSVAVRPSERGVVDKVIITETGDGT-----KLVKVTVRDLRIPEIGDKFASR 879
VSLQ++RE + E + K +T+ GD K+VKV + R + GDK A R
Sbjct: 1059 VSLQQKREEA-----DELYEIKKKKLTQ-GDELQPGVQKMVKVFIAIKRRLQAGDKMAGR 1112
Query: 880 HGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVD 939
HG KGV+ I+P EDMP+ G D+++NP G+PSRM +GQ+LE G A G R+D
Sbjct: 1113 HGNKGVVSRILPVEDMPYMADGRPVDIVLNPLGVPSRMNIGQILEVHLGWAAKGIGERID 1172
Query: 940 ---------------------------------------------------GTAFIGEPE 948
F G E
Sbjct: 1173 RMLKEQRKAGELREFLNRLYNGSGKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKE 1232
Query: 949 EKLRK-----------ELEELGFKHTGREI-MYDGITGKRFEADIFVGVIYYQRLHHMVA 996
++R+ E+E+LGF + +I +YDG +G+ F+ + VGV++Y +LHH+V
Sbjct: 1233 SEIREMLNLAYPSDDPEVEKLGFNDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVD 1292
Query: 997 DKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEV 1056
+K+HARS GP ++T+QP G+A+ GG RFGEME L +GAA L E L +SD
Sbjct: 1293 EKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD---- 1348
Query: 1057 WVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAM 1105
+ R K+Y + E +I M +F +L+ E++++
Sbjct: 1349 -----------DVNGRTKMYENIVKGEHKID-AGMPESFNVLVKEIRSL 1385
Score = 94.0 bits (230), Expect = 8e-18
Identities = 53/166 (31%), Positives = 93/166 (55%), Gaps = 21/166 (12%)
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
++EL G + DD DH N+R+R G+L ++ FR +++ + ++ ++ +
Sbjct: 461 LVELRNGHGEVDDIDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQAESE------ 514
Query: 384 FGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS-- 441
N + D++ + A + G + +SQ +D+TN +S ++H RRV++
Sbjct: 515 ---------NLMPHDLINAKPVSAAIKEFF--GSSQLSQFMDQTNPLSEVTHKRRVSALG 563
Query: 442 --PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQ 485
L RE+ FE RD+H TH+GR+CP ETPEGPN GL+ +L++ A+
Sbjct: 564 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAR 609
>sp|P57009|RPOB_NEIMA DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT) >gi|11261156|pir||D82007
DNA-directed RNA polymerase (EC 2.7.7.6) beta chain
NMA0142 [imported] - Neisseria meningitidis (group A
strain Z2491) >gi|7378914|emb|CAB83457.1| (AL162752)
DNA-directed RNA polymerase beta chain [Neisseria
meningitidis Z2491]
Length = 1392
Score = 148 bits (369), Expect = 4e-34
Identities = 111/349 (31%), Positives = 166/349 (46%), Gaps = 90/349 (25%)
Query: 825 VSLQERRETSVAVRPSERGVVDKVIITETGDGT-----KLVKVTVRDLRIPEIGDKFASR 879
VSLQ++RE + E + K +T+ GD K+VKV + R + GDK A R
Sbjct: 1057 VSLQQKREEA-----DELYEIKKKKLTQ-GDELQPGVQKMVKVFIAIKRRLQAGDKMAGR 1110
Query: 880 HGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVD 939
HG KGV+ I+P EDMP+ G D+++NP G+PSRM +GQ+LE G A G R+D
Sbjct: 1111 HGNKGVVSRILPVEDMPYMADGRPVDIVLNPLGVPSRMNIGQILEVHLGWAAKGIGERID 1170
Query: 940 ---------------------------------------------------GTAFIGEPE 948
F G E
Sbjct: 1171 RMLKEQRKAGELREFLNRLYNGSGKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKE 1230
Query: 949 EKLRK-----------ELEELGFKHTGREI-MYDGITGKRFEADIFVGVIYYQRLHHMVA 996
++R+ E+E+LGF + +I +YDG +G+ F+ + VGV++Y +LHH+V
Sbjct: 1231 SEIREMLNLAYPSDDPEVEKLGFNDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVD 1290
Query: 997 DKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEV 1056
+K+HARS GP ++T+QP G+A+ GG RFGEME L +GAA L E L +SD
Sbjct: 1291 EKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD---- 1346
Query: 1057 WVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAM 1105
+ R K+Y + E +I M +F +L+ E++++
Sbjct: 1347 -----------DVNGRTKMYENIVKGEHKID-AGMPESFNVLVKEIRSL 1383
Score = 94.0 bits (230), Expect = 8e-18
Identities = 53/166 (31%), Positives = 93/166 (55%), Gaps = 21/166 (12%)
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
++EL G + DD DH N+R+R G+L ++ FR +++ + ++ ++ +
Sbjct: 459 LVELRNGHGEVDDIDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQAESE------ 512
Query: 384 FGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS-- 441
N + D++ + A + G + +SQ +D+TN +S ++H RRV++
Sbjct: 513 ---------NLMPHDLINAKPVSAAIKEFF--GSSQLSQFMDQTNPLSEVTHKRRVSALG 561
Query: 442 --PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQ 485
L RE+ FE RD+H TH+GR+CP ETPEGPN GL+ +L++ A+
Sbjct: 562 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAR 607
>sp|Q59622|RPOB_NEIMB DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT)
Length = 1392
Score = 148 bits (369), Expect = 4e-34
Identities = 111/349 (31%), Positives = 166/349 (46%), Gaps = 90/349 (25%)
Query: 825 VSLQERRETSVAVRPSERGVVDKVIITETGDGT-----KLVKVTVRDLRIPEIGDKFASR 879
VSLQ++RE + E + K +T+ GD K+VKV + R + GDK A R
Sbjct: 1057 VSLQQKREEA-----DELYEIKKKKLTQ-GDELQPGVQKMVKVFIAIKRRLQAGDKMAGR 1110
Query: 880 HGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVD 939
HG KGV+ I+P EDMP+ G D+++NP G+PSRM +GQ+LE G A G R+D
Sbjct: 1111 HGNKGVVSRILPVEDMPYMADGRPVDIVLNPLGVPSRMNIGQILEVHLGWAAKGIGERID 1170
Query: 940 ---------------------------------------------------GTAFIGEPE 948
F G E
Sbjct: 1171 RMLKEQRKAGELREFLNRLYNGSGKKEDLDALTDEEIIELASNLRKGASFASPVFDGAKE 1230
Query: 949 EKLRK-----------ELEELGFKHTGREI-MYDGITGKRFEADIFVGVIYYQRLHHMVA 996
++R+ E+E+LGF + +I +YDG +G+ F+ + VGV++Y +LHH+V
Sbjct: 1231 SEIREMLNLAYPSDDPEVEKLGFNDSKTQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVD 1290
Query: 997 DKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEV 1056
+K+HARS GP ++T+QP G+A+ GG RFGEME L +GAA L E L +SD
Sbjct: 1291 EKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD---- 1346
Query: 1057 WVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAM 1105
+ R K+Y + E +I M +F +L+ E++++
Sbjct: 1347 -----------DVNGRTKMYENIVKGEHKID-AGMPESFNVLVKEIRSL 1383
Score = 94.0 bits (230), Expect = 8e-18
Identities = 53/166 (31%), Positives = 93/166 (55%), Gaps = 21/166 (12%)
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
++EL G + DD DH N+R+R G+L ++ FR +++ + ++ ++ +
Sbjct: 459 LVELRNGHGEVDDIDHLGNRRVRSVGELTENQFRSGLARVERAVKERLNQAESE------ 512
Query: 384 FGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS-- 441
N + D++ + A + G + +SQ +D+TN +S ++H RRV++
Sbjct: 513 ---------NLMPHDLINAKPVSAAIKEFF--GSSQLSQFMDQTNPLSEVTHKRRVSALG 561
Query: 442 --PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQ 485
L RE+ FE RD+H TH+GR+CP ETPEGPN GL+ +L++ A+
Sbjct: 562 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAR 607
>sp|O87903|RPOB_COXBU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT) >gi|3660649|gb|AAC61666.1|
(U86688) RNA polymerase beta-subunit [Coxiella burnetii]
Length = 1375
Score = 148 bits (369), Expect = 4e-34
Identities = 97/302 (32%), Positives = 147/302 (48%), Gaps = 68/302 (22%)
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917
K+VKV + R + GDK A RHG KGVI IVP EDMP+ E G D+++NP G+PSRM
Sbjct: 1083 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSRM 1142
Query: 918 TVGQLLEA--------IGGKVAAL------------------------------------ 933
+GQ+LE +G K+ +
Sbjct: 1143 NIGQVLETHLGWAAKGLGKKIGEMIEKGADAKELRKSLKPIYDLSKTQRFDLEALEDPEI 1202
Query: 934 --------KGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGV 985
KG + F G EE++++ L+ +G+ +YDG TGK+F+ + VG
Sbjct: 1203 VMLAKNLRKGVPISSPVFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGY 1262
Query: 986 IYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIE 1045
+Y +L+H+V DK+HARS G ++T+QP G+A+ GG RFGEME L +GAA L E
Sbjct: 1263 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1322
Query: 1046 RLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAM 1105
L +SD + R ++Y + + R+ M +F +L+ E++++
Sbjct: 1323 MLTVKSD---------------DVAGRTRMYKNIVDGDHRMD-AGMPESFNVLVKEIRSL 1366
Query: 1106 VI 1107
I
Sbjct: 1367 AI 1368
Score = 96.3 bits (236), Expect = 2e-18
Identities = 68/241 (28%), Positives = 121/241 (49%), Gaps = 37/241 (15%)
Query: 265 TTQQEALEYIGKLVAPGQ-----AREYRLKRAEYVIDNNLLPHIG-VSPEDRIRKAYYLG 318
T Q EAL I +++ PG+ A E + + + L +G + R+ + G
Sbjct: 378 TNQLEALVEIYRIMRPGEPPTKEAAESLFENLFFSPERYSLSAVGRMKFNRRVGRKELTG 437
Query: 319 MMALK----------VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQ 368
+ L ++++ GK D DD DH N+R+R G++ ++ FRV ++ + ++
Sbjct: 438 LDVLSKEDIVDVLRVLVDIRDGKGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 497
Query: 369 YQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTN 428
+++ + N + D++ + A + G + +SQ +D+ N
Sbjct: 498 DRLSLAD---------------VENLMPQDLVNAKPVSAAIKEFF--GSSQLSQFMDQNN 540
Query: 429 YVSTLSHLRRVTS----PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMA 484
+S ++H RRV++ L RE+ FE RD+H TH+GR+CP ETPEGPN GL+ +LA+ A
Sbjct: 541 PLSEITHKRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFA 600
Query: 485 Q 485
+
Sbjct: 601 R 601
>sp|O67762|RPOB_AQUAE DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT) >gi|7434715|pir||F70466 RNA
polymerase beta subunit - Aquifex aeolicus
>gi|2984192|gb|AAC07723.1| (AE000764) RNA polymerase beta
subunit [Aquifex aeolicus]
Length = 1468
Score = 146 bits (365), Expect = 1e-33
Identities = 112/349 (32%), Positives = 162/349 (46%), Gaps = 100/349 (28%)
Query: 828 QERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIG 887
+E++ET + R GV+ LVKV + + R ++GDK A RHG KGVI
Sbjct: 1134 EEKKETLLKRRDLPPGVIT------------LVKVFIANKRKIKVGDKMAGRHGNKGVIS 1181
Query: 888 LIVPQEDMPWTESGIVPDLIVNPHGIPSRMTV-------------------GQLLE---- 924
+++P EDMP+ G D+++NP G+PSRM V G+++E
Sbjct: 1182 VVLPVEDMPFLPDGTPVDIVLNPLGVPSRMNVGQILETHLGWAAKELGKKIGEMIEKGRD 1241
Query: 925 ------------AIGGKVA-------------------------ALKGRRVDGTAFIGEP 947
AIG K A +G + AF G
Sbjct: 1242 RKAITEYLKEIFAIGDKDGENAKFIEEFLNSLSEEEFWSVVRDYAERGIPMATPAFEGAE 1301
Query: 948 EEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPV 1007
E+ +++ L++ G G+ +YDG TG+ F+ ++ VG ++ +L HMV DKIHAR+ GP
Sbjct: 1302 EDAIKELLKKAGLPENGKTTLYDGRTGEPFDFEVTVGYMHMLKLIHMVDDKIHARATGPY 1361
Query: 1008 QVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAL 1067
++T+QP GRA+ GG R GEME L HGAA L E L +SD E
Sbjct: 1362 SLVTQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEMLTVKSDDVE------------ 1409
Query: 1068 EDKRRHKVYCPVCGEEERISKVEMSY------AFKLLLDELKAMVIRPK 1110
R KVY E I K + +Y +FK+L+ ELKA+ + K
Sbjct: 1410 ---GRTKVY-------EAIVKGKYTYTPGIPESFKVLVRELKALGLNVK 1448
Score = 89.7 bits (219), Expect = 2e-16
Identities = 95/362 (26%), Positives = 150/362 (41%), Gaps = 109/362 (30%)
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
+I+L G+ +DD H N+R+R G+LL++ R+ ++ M K ++ R
Sbjct: 512 LIDLRHGRVKKDDIAHLGNRRVRSVGELLENQARLGIAK--------MEKVFRDRSAVIN 563
Query: 384 FGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS-- 441
++ I P +T I L TG +SQ LD TN +S L+H RR+++
Sbjct: 564 PEQPDLKPQDFINPRYVTTAITDFLKTGQ-------LSQYLDNTNPLSELTHKRRLSALG 616
Query: 442 --PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYL 499
L RE FE RD+H +H+GRICP ETPEG N GLV + + A+ V EY
Sbjct: 617 PGGLTRESAKFEIRDVHPSHYGRICPIETPEGQNIGLVTSPTVYAR---------VNEY- 666
Query: 500 MSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIIN-VAYYE 558
G + R+ +GK++D I +A YE
Sbjct: 667 ---GFLITPYRKV-------------------------------ENGKVTDKIEWLAAYE 692
Query: 559 DVREVYVNS----DDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLD 614
+ V S ++GR++ I+ H I+ LV+ +EY+D
Sbjct: 693 EENYVIAQSTPTDEEGRLKAEFILA---------RHKNDIR--------LVKPEQVEYID 735
Query: 615 AEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSL 674
+ P ++ +SLIP+ EH+ A R G+ M +Q++
Sbjct: 736 ------------------------VSPRQVISPSSSLIPFLEHDDANRALMGSNMQRQAV 771
Query: 675 GL 676
L
Sbjct: 772 PL 773
>gb|AAB57999.1| (U86941) similar to variola A25R and vaccinia A24R [Molluscum
contagiosum virus subtype 1]
Length = 337
Score = 145 bits (361), Expect = 4e-33
Identities = 95/296 (32%), Positives = 154/296 (51%), Gaps = 28/296 (9%)
Query: 845 VDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVP 904
V++V + T D K+ +T+++ R P +GDKF SR QKG + + + ++P+ + G+ P
Sbjct: 27 VERVQVDLT-DKVKVRVLTIKERR-PVLGDKFTSRTSQKGTVAYLADEAELPYDDDGLTP 84
Query: 905 DLIVNPHGIPSRMTVGQLLEAIGGKVAALKGRRVDG------------------TAFIGE 946
D+IVN I SR T+ L+E + A K AF +
Sbjct: 85 DIIVNSTSIYSRKTISMLVEIMLTAAYAAKPYNNQDQNRPICFPSSNETSIETYLAFARK 144
Query: 947 PEEKLRKELE--ELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSR 1004
E + EL EL + + +YD T + + A +F+G IYY RL H+ DK R R
Sbjct: 145 CYESVFPELRETELQARLFCEKTLYDPETDEPYAAAVFMGPIYYLRLRHLTQDKATVRCR 204
Query: 1005 GPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLE-ESDKTEVWVCENCG 1063
G L +Q EGR R GG++FGEMERD L+ HGAA + E L + E D +V VCE+CG
Sbjct: 205 GKKTKLIRQANEGRKRGGGIKFGEMERDCLIAHGAANTITEILKDSEEDSQDVHVCEHCG 264
Query: 1064 HIALEDKRRHKVYCPVCGE---EERISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
IA ++ + ++C C + +++V+ ++ K+ L ++ A ++ +L ++
Sbjct: 265 DIA--TRKNNVLFCIRCTKLNLSPVLTRVDTTHVSKVFLTQMNARGVKVRLEFEKQ 318
>gb|AAC69338.1| (AF087812) RNA polymerase B-subunit [Legionella pneumophila]
Length = 1368
Score = 144 bits (360), Expect = 5e-33
Identities = 98/302 (32%), Positives = 144/302 (47%), Gaps = 68/302 (22%)
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917
K+VKV + R + GDK A RHG KGVI ++VP EDMP E G D+++NP G+PSRM
Sbjct: 1076 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGTAVDIVLNPLGVPSRM 1135
Query: 918 TVGQLLEAIGGKVAALKGRRV-----------------------DGT------------- 941
+GQ+LE G A GR++ DG
Sbjct: 1136 NIGQVLETHLGLAAKGLGRKIAQMLDERQTPEAIKAYLEKIYNHDGVQRVNLKCLNDDEL 1195
Query: 942 ----------------AFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGV 985
F G E++++ L+ G+ ++ DG TG +F+ + VG
Sbjct: 1196 MTLADNLRAGVPMATPVFDGATEQEIKSMLQLADLPADGKTVLIDGRTGNKFDNPVTVGY 1255
Query: 986 IYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIE 1045
+Y +L+H+V DK+HARS G ++T+QP G+A+ GG RFGEME L +GAA L E
Sbjct: 1256 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1315
Query: 1046 RLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAM 1105
L +SD + R K+Y + + R+ M +F +LL E++A+
Sbjct: 1316 MLTVKSD---------------DVGGRTKIYKNIVDGDHRMDP-GMPESFNVLLKEIRAL 1359
Query: 1106 VI 1107
I
Sbjct: 1360 GI 1361
Score = 90.1 bits (220), Expect = 1e-16
Identities = 75/283 (26%), Positives = 138/283 (48%), Gaps = 50/283 (17%)
Query: 235 ERDKDIVDAVGNDP--EVQQILFDNLEDASDIT---------TQQEALEYIGKLVAPGQ- 282
E ++++DA+ N ++ I ++L+ S I+ +Q EAL I +++ PG+
Sbjct: 331 EITEELLDAMANHGILQIDMIYTNDLDHGSYISDTLKIDPTGSQLEALVEIYRMMRPGEP 390
Query: 283 ----AREYRLKRAEYVIDNNLLPHIGVSPEDR------------IRKAYYLGMMALKVIE 326
A E K +V + L +G +R + K L ++ +I+
Sbjct: 391 PTKEAAEALFKNLFFVEERYDLSAVGRMKFNRRVGIKSDEGPGTLTKEDILSVIKT-LID 449
Query: 327 LSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGN 386
+ G DD DH N+R+R G++ ++ FRV ++ + ++ +++
Sbjct: 450 IRNGIGMVDDIDHLGNRRVRSVGEMTENQFRVGLVRVERAVKERLSLVESE--------- 500
Query: 387 IHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----P 442
N + D++ + A + G + +SQ +D+ N +S ++H RRV++
Sbjct: 501 ------NLMPQDLINAKPVSAAIKEFF--GSSQLSQFMDQVNPLSGVTHKRRVSALGPGG 552
Query: 443 LDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQ 485
L RE+ FE RD+H TH+GR+CP ETPEGPN GL+ +L++ A+
Sbjct: 553 LTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYAR 595
>emb|CAA52957.1| (X75046) DNA dependent RNA polymerase [Aquifex pyrophilus]
Length = 1469
Score = 144 bits (360), Expect = 5e-33
Identities = 109/349 (31%), Positives = 162/349 (46%), Gaps = 100/349 (28%)
Query: 828 QERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIG 887
QE++ET + R GV+ LVKV + + R ++GDK A RHG KGVI
Sbjct: 1135 QEKKETLLKRRDLPPGVIT------------LVKVFIANKRKIKVGDKMAGRHGNKGVIS 1182
Query: 888 LIVPQEDMPWTESGIVPDLIVNPHGIPSRMT-------------------VGQLLE---- 924
+++P EDMP+ G D+++NP G+PSRM +G+++E
Sbjct: 1183 VVLPVEDMPFLPDGTPVDIVLNPLGVPSRMNVGQILETHLGWAAKELGKKIGEMIEKGRD 1242
Query: 925 ------------AIGGKVA-------------------------ALKGRRVDGTAFIGEP 947
A+G + A +G + AF G
Sbjct: 1243 RKAITEYLKEIYAVGDENGENAKFIEEFLNSLSEEEFWSVVRDYAQRGIPMATPAFEGAD 1302
Query: 948 EEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPV 1007
E+ +++ L++ G +G+ +YDG TG+ F+ ++ VG ++ +L HMV DKIHAR+ GP
Sbjct: 1303 EKAVKELLKKAGLPESGKTTLYDGRTGEPFDFEVTVGYMHMLKLIHMVDDKIHARATGPY 1362
Query: 1008 QVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIAL 1067
++T+QP GRA+ GG R GEME L HGAA L E L +SD E
Sbjct: 1363 SLVTQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEMLTVKSDDVE------------ 1410
Query: 1068 EDKRRHKVYCPVCGEEERISKVEMSY------AFKLLLDELKAMVIRPK 1110
R KVY E I K + +Y +FK+L+ ELK + + K
Sbjct: 1411 ---GRSKVY-------EAIVKGKYTYTPGIPESFKVLVRELKGLSLNVK 1449
Score = 89.3 bits (218), Expect = 2e-16
Identities = 90/362 (24%), Positives = 152/362 (41%), Gaps = 109/362 (30%)
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
+I+L G+ +DD H N+R+R G+LL++ R+ +++ K + + + + +
Sbjct: 512 LIDLRHGRVKKDDIAHLGNRRVRSVGELLENQARLGIAKMEKVFRDRSATIHPEQPDLKP 571
Query: 384 FGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS-- 441
++ I P +T I L TG +SQ LD TN +S L+H RR+++
Sbjct: 572 --------QDFINPRYVTNAIADFLKTGQ-------LSQYLDNTNPLSELTHKRRLSALG 616
Query: 442 --PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEVKEYL 499
L RE FE RD+H +H+GRICP ETPEG N GLV + + A+ V EY
Sbjct: 617 PGGLTRESAKFEIRDVHPSHYGRICPIETPEGQNIGLVTSPTVYAR---------VNEY- 666
Query: 500 MSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIIN-VAYYE 558
G + R+ +G+++D I +A YE
Sbjct: 667 ---GFLITPYRKV-------------------------------ENGRVTDKIEWLAAYE 692
Query: 559 DVREVYVNS----DDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLD 614
+ V S ++GR++ ++ H I+ LV+ ++Y+D
Sbjct: 693 EENYVIAQSTPTDEEGRIKAEFVLA---------RHKNDIR--------LVKPEQVDYID 735
Query: 615 AEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSL 674
+ P ++ +SLIP+ EH+ A R G+ M +Q++
Sbjct: 736 ------------------------VSPRQVISPSSSLIPFLEHDDANRALMGSNMQRQAV 771
Query: 675 GL 676
L
Sbjct: 772 PL 773
>pir||E82533 RNA polymerase beta subunit XF2633 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9107862|gb|AAF85430.1|AE004070_2
(AE004070) RNA polymerase beta subunit [Xylella
fastidiosa]
Length = 1388
Score = 142 bits (355), Expect = 2e-32
Identities = 97/310 (31%), Positives = 151/310 (48%), Gaps = 73/310 (23%)
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917
K+VKV + R + GDK A RHG KGV+ +VP EDMP+ E G D+++NP G+PSRM
Sbjct: 1093 KMVKVFLAVKRCIQPGDKMAGRHGNKGVVSNVVPVEDMPFMEDGTPVDIVLNPLGVPSRM 1152
Query: 918 TVGQLLEAIGGKVA--------------------------------ALKGRRVD------ 939
+GQ+LE G A ++ G RVD
Sbjct: 1153 NIGQILEVHLGWAAKGLGHRIQRMLEANAAIADLRKFLNEIYNHDKSVVGERVDLSQFSD 1212
Query: 940 -----------------GTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIF 982
F G E+++++ L+ G+ +YDG TG+ F+
Sbjct: 1213 DELLNMAKNLTDGVPMASPVFDGASEQEIKRMLDLAELPTGGQTQLYDGHTGEPFDRKTT 1272
Query: 983 VGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAML 1042
VG ++Y +L+H+V DK+HARS GP ++T+QP G+A+ GG RFGEME L +GAA
Sbjct: 1273 VGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1332
Query: 1043 LIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVC-GEEERISKVEMSYAFKLLLDE 1101
L E L +SD + R+++Y + G+ + ++ M +F +L+ E
Sbjct: 1333 LQEMLTVKSDDVQ---------------GRNQMYKNIVDGDHQMVA--GMPESFNVLVKE 1375
Query: 1102 LKAMVIRPKL 1111
++++ I +L
Sbjct: 1376 IRSLAINIEL 1385
Score = 81.1 bits (197), Expect = 6e-14
Identities = 49/164 (29%), Positives = 87/164 (52%), Gaps = 21/164 (12%)
Query: 326 ELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFG 385
E+ G+ DD DH N+R+R G++ +++FRV ++ + ++ +++
Sbjct: 466 EIRNGRGVVDDIDHLGNRRVRSVGEMAENVFRVGLVRVERAVKERLSMAES--------- 516
Query: 386 NIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS---- 441
+ P L A A + G + +SQ +D+ N +S ++H RR+++
Sbjct: 517 -------EGLTPQELINAKPVAAAIKEF-FGSSQLSQFMDQNNPLSEVTHKRRLSALGPG 568
Query: 442 PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQ 485
L RE+ FE RD+H +H+G +C ETPEGPN GL+ +LA+ A+
Sbjct: 569 GLTRERAGFEVRDVHLSHYGCLCTIETPEGPNIGLINSLAVFAR 612
>sp|P19175|RPOB_PSEPU DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT) >gi|45729|emb|CAA33846.1|
(X15849) beta-subunit of RNA polymerase [Pseudomonas
putida]
Length = 1357
Score = 137 bits (342), Expect = 6e-31
Identities = 95/302 (31%), Positives = 146/302 (47%), Gaps = 68/302 (22%)
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917
K+VKV + R + GDK A RHG KGV+ +I+P EDMP +G D+++NP G+PSRM
Sbjct: 1065 KIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRM 1124
Query: 918 TVGQLLEA------------------------------------IGGKVAAL-------- 933
VGQ+LE IGG+ L
Sbjct: 1125 NVGQILETHLGLAAKGLGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLDEFTDEEI 1184
Query: 934 --------KGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGV 985
KG + F G E +++ L+ +G+ +++DG T +FE + VG
Sbjct: 1185 LALANNLKKGVPMATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTRNKFERPVTVGY 1244
Query: 986 IYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIE 1045
+Y +L+H+V DK+HARS G ++T+QP G+A+ GG RFGEME L +GAA L E
Sbjct: 1245 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1304
Query: 1046 RLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAM 1105
L +SD + R K+Y + + R+ + M+ +F +L+ E++++
Sbjct: 1305 MLTVKSD---------------DVNGRTKMYKNIVDGDHRM-EPGMAESFNVLIKEIRSL 1348
Query: 1106 VI 1107
I
Sbjct: 1349 GI 1350
Score = 94.0 bits (230), Expect = 8e-18
Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 50/288 (17%)
Query: 246 NDPEVQQILFDNLEDASDITTQQ-EALEYIGKLVAPGQAREYRLKRAEYVIDNNLL---P 301
ND + + D L+ D T+ Q EAL I +++ PG E K A + NNL
Sbjct: 344 NDIDCGPFISDTLK--IDTTSNQLEALVEIYRMMRPG---EPPTKDAAETLFNNLFFSAE 398
Query: 302 HIGVSPEDRIRKAYYLGMMALK----------------VIELSLGKRDEDDKDHYANKRL 345
+SP R++ +G ++ ++++ GK DD DH N+R+
Sbjct: 399 RYDLSPLGRMKFNRRIGRTEIEGSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRV 458
Query: 346 RLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIE 405
R G++ ++ FRV ++ + ++ +++ + P L
Sbjct: 459 RCVGEMAENQFRVGLVRVERAVKERLSMAES----------------EGLMPQDLINAKP 502
Query: 406 HALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHFEARDLHGTHWG 461
A A + G + +SQ +D+ N +S ++H RR ++ L RE+ FE RD+H TH+G
Sbjct: 503 VAAAVKEF-FGSSQLSQFMDQNNPLSEITHKRRCSALGPGGLTRERAGFEVRDVHPTHYG 561
Query: 462 RICPTETPEGPNCGLVKNLALMAQIT----TAVPEEEVKEYLMSLGIV 505
R+CP ETPEGPN GL+ +LA A+ P VKE ++S IV
Sbjct: 562 RVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKEGVVSDDIV 609
>prf||1606216A RNA polymerase beta [Pseudomonas putida]
Length = 1357
Score = 136 bits (338), Expect = 2e-30
Identities = 95/302 (31%), Positives = 145/302 (47%), Gaps = 68/302 (22%)
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917
K+VKV + R + GDK A RHG KGV+ +I+P EDMP +G D+++NP G+PSRM
Sbjct: 1065 KIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRM 1124
Query: 918 TVGQLLEA------------------------------------IGGKVAAL-------- 933
VGQ+LE IGG+ L
Sbjct: 1125 NVGQILETHLGLAAKGLGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLDEFTDEEI 1184
Query: 934 --------KGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGV 985
KG + F G E +++ L+ +G+ +++DG T +FE + VG
Sbjct: 1185 LALANNLKKGVPMATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTRNKFERPVTVGY 1244
Query: 986 IYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIE 1045
+Y +L+H+V DK+HARS G ++T+QP G A+ GG RFGEME L +GAA L E
Sbjct: 1245 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGLAQFGGQRFGEMEVWALEAYGAAYTLQE 1304
Query: 1046 RLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAM 1105
L +SD + R K+Y + + R+ + M+ +F +L+ E++++
Sbjct: 1305 MLTVKSD---------------DVNGRTKMYKNIVDGDHRM-EPGMAESFNVLIKEIRSL 1348
Query: 1106 VI 1107
I
Sbjct: 1349 GI 1350
Score = 94.0 bits (230), Expect = 8e-18
Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 50/288 (17%)
Query: 246 NDPEVQQILFDNLEDASDITTQQ-EALEYIGKLVAPGQAREYRLKRAEYVIDNNLL---P 301
ND + + D L+ D T+ Q EAL I +++ PG E K A + NNL
Sbjct: 344 NDIDCGPFISDTLK--IDTTSNQLEALVEIYRMMRPG---EPPTKDAAETLFNNLFFSAE 398
Query: 302 HIGVSPEDRIRKAYYLGMMALK----------------VIELSLGKRDEDDKDHYANKRL 345
+SP R++ +G ++ ++++ GK DD DH N+R+
Sbjct: 399 RYDLSPLGRMKFNRRIGRTEIEGSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRV 458
Query: 346 RLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIE 405
R G++ ++ FRV ++ + ++ +++ + P L
Sbjct: 459 RCVGEMAENQFRVGLVRVERAVKERLSMAES----------------EGLMPQDLINAKP 502
Query: 406 HALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHFEARDLHGTHWG 461
A A + G + +SQ +D+ N +S ++H RR ++ L RE+ FE RD+H TH+G
Sbjct: 503 VAAAVKEF-FGSSQLSQFMDQNNPLSEITHKRRCSALGPGGLTRERAGFEVRDVHPTHYG 561
Query: 462 RICPTETPEGPNCGLVKNLALMAQIT----TAVPEEEVKEYLMSLGIV 505
R+CP ETPEGPN GL+ +LA A+ P VKE ++S IV
Sbjct: 562 RVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVKEGVVSDDIV 609
>gb|AAF22437.1|AF076436_1 (AF076436) RNA polymerase beta subunit; RpoB [Rickettsia sp. Bar29]
Length = 1373
Score = 135 bits (336), Expect = 3e-30
Identities = 99/310 (31%), Positives = 143/310 (45%), Gaps = 69/310 (22%)
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917
K+VKV + + GDK A RHG KGVI IVP+EDMP+ E G V D+++NP G+PSRM
Sbjct: 1078 KVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRM 1137
Query: 918 TVGQLLEA--------IGGKVAAL------------------------------------ 933
+GQ+LE + K++ L
Sbjct: 1138 NIGQILETHLGWASINLAKKISTLVKEYKNKHIGIEQIKKFLIELYGENINSILERSEEE 1197
Query: 934 ---------KGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVG 984
KG F G + ++ L+ G +G+ + DG TG+ F+ + VG
Sbjct: 1198 IISFCKKVSKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVG 1257
Query: 985 VIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLI 1044
Y +LHH+V +KIH+RS GP ++T+QP G++ GG RFGEME L +GAA L
Sbjct: 1258 QKYLLKLHHLVNNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQ 1317
Query: 1045 ERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKA 1104
E L +SD G I D V GE S + S F +++ E ++
Sbjct: 1318 EMLTVKSDDVN-------GRIKTYDS-------IVRGENNFESGIPES--FNVMIKEFRS 1361
Query: 1105 MVIRPKLNLT 1114
+ + KL +T
Sbjct: 1362 LCLNVKLEVT 1371
Score = 93.6 bits (229), Expect = 1e-17
Identities = 54/168 (32%), Positives = 93/168 (55%), Gaps = 23/168 (13%)
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
++EL GK DD DH N+R+R G+L+++ FR+ ++ K + +M+
Sbjct: 449 LVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIERMSA---------- 498
Query: 384 FGNIHRFIRNS-IRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS- 441
G++ + + + +L ++ T +SQ +D+TN +S ++H RR+++
Sbjct: 499 -GDVDTVMPHDLVNSKILVSVVKEFFNTSQ-------LSQFMDQTNPLSEITHKRRLSAL 550
Query: 442 ---PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQI 486
L R++ FE RD+H TH+GRICP ETPEG N GL+ ++A A+I
Sbjct: 551 GPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARI 598
>gb|AAF22431.1| (AF076433) RNA polymerase beta subunit; RpoB [Rickettsia massiliae]
Length = 1373
Score = 135 bits (336), Expect = 3e-30
Identities = 99/310 (31%), Positives = 143/310 (45%), Gaps = 69/310 (22%)
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917
K+VKV + + GDK A RHG KGVI IVP+EDMP+ E G V D+++NP G+PSRM
Sbjct: 1078 KVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRM 1137
Query: 918 TVGQLLEA--------IGGKVAAL------------------------------------ 933
+GQ+LE + K++ L
Sbjct: 1138 NIGQILETHLGWASINLAKKISTLVKEYKNKHIGIEQIKKFLIELYGENINSILERPEEE 1197
Query: 934 ---------KGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVG 984
KG F G + ++ L+ G +G+ + DG TG+ F+ + VG
Sbjct: 1198 IISFCKKVSKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVG 1257
Query: 985 VIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLI 1044
Y +LHH+V +KIH+RS GP ++T+QP G++ GG RFGEME L +GAA L
Sbjct: 1258 QKYLLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQ 1317
Query: 1045 ERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKA 1104
E L +SD G I D V GE S + S F +++ E ++
Sbjct: 1318 EMLTVKSDDVN-------GRIKTYDS-------IVRGENNFESGIPES--FNVMIKEFRS 1361
Query: 1105 MVIRPKLNLT 1114
+ + KL +T
Sbjct: 1362 LCLNVKLEVT 1371
Score = 94.4 bits (231), Expect = 6e-18
Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 42/228 (18%)
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
++EL GK DD DH N+R+R G+L+++ FR+ ++ K + +M+
Sbjct: 449 LVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIERMSA---------- 498
Query: 384 FGNIHRFIRNS-IRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS- 441
G++ + + + +L ++ T +SQ +D+TN +S ++H RR+++
Sbjct: 499 -GDVDTVMPHDLVNSKILVSVVKEFFNTSQ-------LSQFMDQTNPLSEITHKRRLSAL 550
Query: 442 ---PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQIT----TAVPEEE 494
L R++ FE RD+H TH+GRICP ETPEG N GL+ ++A A+I P
Sbjct: 551 GPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRR 610
Query: 495 VKEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKD 542
VK+ G V EV VYL+ + G + G+A ++ KD
Sbjct: 611 VKD-----GCVTDEV---------VYLSAIEEGKYKIGQA-NSKVNKD 643
>sp|O52271|RPOB_RICPR DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN)
(RNA POLYMERASE BETA SUBUNIT) >gi|7434707|pir||A71724
dna-directed RNA polymerase beta chain (rpoB) RP140 -
Rickettsia prowazekii >gi|2746230|gb|AAC38354.1|
(AF034531) RNA polymerase beta subunit [Rickettsia
prowazekii] >gi|3860707|emb|CAA14608.1| (AJ235270)
DNA-DIRECTED RNA POLYMERASE BETA CHAIN (rpoB) [Rickettsia
prowazekii]
Length = 1374
Score = 135 bits (336), Expect = 3e-30
Identities = 100/310 (32%), Positives = 143/310 (45%), Gaps = 69/310 (22%)
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917
K+VKV + + GDK A RHG KGVI IVP+EDMP+ E G V D+++NP G+PSRM
Sbjct: 1078 KVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRM 1137
Query: 918 TVGQLLEA--------IGGKVAAL------------------------------------ 933
+GQ+LE + K++ L
Sbjct: 1138 NIGQILETHLGWASINLAKKISTLVKEYKDNHIDIEEIKKFLLELYGKDINYILEGSEEE 1197
Query: 934 ---------KGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVG 984
KG F G + ++ LE G +G+ + DG TG+ F+ + VG
Sbjct: 1198 IISFCNKVSKGVYFATPVFDGAKVQDVKDMLELAGQDLSGQVKLIDGRTGEYFDRLVTVG 1257
Query: 985 VIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLI 1044
Y +LHH+V +KIH+RS GP ++T+QP G++ GG RFGEME L +GAA L
Sbjct: 1258 HKYLLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQ 1317
Query: 1045 ERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKA 1104
E L +SD G I D V GE S + S F +++ E ++
Sbjct: 1318 EMLTVKSDDVN-------GRIKTYDS-------IVRGENNFESGIPES--FNVMIKEFRS 1361
Query: 1105 MVIRPKLNLT 1114
+ + KL +T
Sbjct: 1362 LCLNVKLEVT 1371
Score = 94.8 bits (232), Expect = 5e-18
Identities = 54/168 (32%), Positives = 94/168 (55%), Gaps = 23/168 (13%)
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
++EL GK DD DH N+R+R G+L+++ FR+ ++ K + +M+
Sbjct: 449 LVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIERMSA---------- 498
Query: 384 FGNIHRFIRNS-IRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS- 441
G++ + + + +L ++ +T +SQ +D+TN +S ++H RR+++
Sbjct: 499 -GDVDTVMPHDLVNSKILVSVVKEFFSTSQ-------LSQFMDQTNPLSEITHKRRLSAL 550
Query: 442 ---PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQI 486
L R++ FE RD+H TH+GRICP ETPEG N GL+ ++A A+I
Sbjct: 551 GPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARI 598
>gb|AAF22439.1|AF076437_1 (AF076437) RNA polymerase beta subunit; RpoB [Rickettsia prowazekii]
Length = 1374
Score = 135 bits (336), Expect = 3e-30
Identities = 100/310 (32%), Positives = 143/310 (45%), Gaps = 69/310 (22%)
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917
K+VKV + + GDK A RHG KGVI IVP+EDMP+ E G V D+++NP G+PSRM
Sbjct: 1078 KVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRM 1137
Query: 918 TVGQLLEA--------IGGKVAAL------------------------------------ 933
+GQ+LE + K++ L
Sbjct: 1138 NIGQILETHLGWASINLAKKISTLVKEYKDNHIDIEEIKKFLLELYGKDINYILEGSEEE 1197
Query: 934 ---------KGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVG 984
KG F G + ++ LE G +G+ + DG TG+ F+ + VG
Sbjct: 1198 IISFCNKVSKGVYFATPVFDGAKVQDVKDMLELAGQDLSGQVKLIDGRTGEYFDRLVTVG 1257
Query: 985 VIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLI 1044
Y +LHH+V +KIH+RS GP ++T+QP G++ GG RFGEME L +GAA L
Sbjct: 1258 HKYLLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQ 1317
Query: 1045 ERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKA 1104
E L +SD G I D V GE S + S F +++ E ++
Sbjct: 1318 EMLTVKSDDVN-------GRIKTYDS-------IVRGENNFESGIPES--FNVMIKEFRS 1361
Query: 1105 MVIRPKLNLT 1114
+ + KL +T
Sbjct: 1362 LCLNVKLEVT 1371
Score = 94.8 bits (232), Expect = 5e-18
Identities = 54/168 (32%), Positives = 94/168 (55%), Gaps = 23/168 (13%)
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
++EL GK DD DH N+R+R G+L+++ FR+ ++ K + +M+
Sbjct: 449 LVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIERMSA---------- 498
Query: 384 FGNIHRFIRNS-IRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS- 441
G++ + + + +L ++ +T +SQ +D+TN +S ++H RR+++
Sbjct: 499 -GDVDTVMPHDLVNSKILVSVVKEFFSTSQ-------LSQFMDQTNPLSEITHKRRLSAL 550
Query: 442 ---PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQI 486
L R++ FE RD+H TH+GRICP ETPEG N GL+ ++A A+I
Sbjct: 551 GPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARI 598
>gb|AAF22433.1|AF076434_1 (AF076434) RNA polymerase beta subunit; RpoB [Rickettsia conorii]
Length = 1373
Score = 135 bits (336), Expect = 3e-30
Identities = 99/310 (31%), Positives = 143/310 (45%), Gaps = 69/310 (22%)
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917
K+VKV + + GDK A RHG KGVI IVP+EDMP+ E G V D+++NP G+PSRM
Sbjct: 1078 KVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRM 1137
Query: 918 TVGQLLEA--------IGGKVAAL------------------------------------ 933
+GQ+LE + K++ L
Sbjct: 1138 NIGQILETHLGWASINLAKKISTLVKEYKNKHIGIEQIKKFLIELYGENINSILERPEEE 1197
Query: 934 ---------KGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVG 984
KG F G + ++ L+ G +G+ + DG TG+ F+ + VG
Sbjct: 1198 IISFCKKVSKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVG 1257
Query: 985 VIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLI 1044
Y +LHH+V +KIH+RS GP ++T+QP G++ GG RFGEME L +GAA L
Sbjct: 1258 QKYLLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQ 1317
Query: 1045 ERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKA 1104
E L +SD G I D V GE S + S F +++ E ++
Sbjct: 1318 EMLTVKSDDVN-------GRIKTYDS-------IVRGENNFESGIPES--FNVMIKEFRS 1361
Query: 1105 MVIRPKLNLT 1114
+ + KL +T
Sbjct: 1362 LCLNVKLEVT 1371
Score = 96.0 bits (235), Expect = 2e-18
Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 42/228 (18%)
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
++EL GK DD DH N+R+R G+L+++ FR+ ++ K + +M+
Sbjct: 449 LVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIERMSA---------- 498
Query: 384 FGNIHRFIRNS-IRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS- 441
G++ + + + +L ++ +T +SQ +D+TN +S ++H RR+++
Sbjct: 499 -GDVDTVMPHDLVNSKILVSVVKEFFSTSQ-------LSQFMDQTNPLSEITHKRRLSAL 550
Query: 442 ---PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQIT----TAVPEEE 494
L R++ FE RD+H TH+GRICP ETPEG N GL+ ++A A+I P
Sbjct: 551 GPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRR 610
Query: 495 VKEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKD 542
VK+ G V EV VYL+ + G + G+A +I KD
Sbjct: 611 VKD-----GCVTDEV---------VYLSAIEEGKYKIGQA-NSKINKD 643
>gb|AAF22435.1| (AF076435) RNA polymerase beta subunit; RpoB [Rickettsia conorii]
Length = 1373
Score = 135 bits (336), Expect = 3e-30
Identities = 99/310 (31%), Positives = 143/310 (45%), Gaps = 69/310 (22%)
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917
K+VKV + + GDK A RHG KGVI IVP+EDMP+ E G V D+++NP G+PSRM
Sbjct: 1078 KVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRM 1137
Query: 918 TVGQLLEA--------IGGKVAAL------------------------------------ 933
+GQ+LE + K++ L
Sbjct: 1138 NIGQILETHLGWASINLAKKISTLVKEYKNKHIGIEQIKKFLIELYGENINSILERPEEE 1197
Query: 934 ---------KGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVG 984
KG F G + ++ L+ G +G+ + DG TG+ F+ + VG
Sbjct: 1198 IISFCKKVSKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVG 1257
Query: 985 VIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLI 1044
Y +LHH+V +KIH+RS GP ++T+QP G++ GG RFGEME L +GAA L
Sbjct: 1258 QKYLLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQ 1317
Query: 1045 ERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKA 1104
E L +SD G I D V GE S + S F +++ E ++
Sbjct: 1318 EMLTVKSDDVN-------GRIKTYDS-------IVRGENNFESGIPES--FNVMIKEFRS 1361
Query: 1105 MVIRPKLNLT 1114
+ + KL +T
Sbjct: 1362 LCLNVKLEVT 1371
Score = 96.0 bits (235), Expect = 2e-18
Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 42/228 (18%)
Query: 324 VIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYV 383
++EL GK DD DH N+R+R G+L+++ FR+ ++ K + +M+
Sbjct: 449 LVELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIERMSA---------- 498
Query: 384 FGNIHRFIRNS-IRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS- 441
G++ + + + +L ++ +T +SQ +D+TN +S ++H RR+++
Sbjct: 499 -GDVDTVMPHDLVNSKILVSVVKEFFSTSQ-------LSQFMDQTNPLSEITHKRRLSAL 550
Query: 442 ---PLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQIT----TAVPEEE 494
L R++ FE RD+H TH+GRICP ETPEG N GL+ ++A A+I P
Sbjct: 551 GPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRR 610
Query: 495 VKEYLMSLGIVPIEVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKD 542
VK+ G V EV VYL+ + G + G+A +I KD
Sbjct: 611 VKD-----GCVTDEV---------VYLSAIEEGKYKIGQA-NSKINKD 643
>pir||JN0419 DNA-directed RNA polymerase (EC 2.7.7.6) beta chain - Pseudomonas
putida (fragment) >gi|151547|gb|AAA25986.1| (M38319) RNA
polymerase (rpoB) (EC 2.7.7.6) [Pseudomonas putida]
Length = 322
Score = 134 bits (335), Expect = 4e-30
Identities = 96/302 (31%), Positives = 147/302 (47%), Gaps = 68/302 (22%)
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917
K+VKV + R + GDK A RHG KGV+ +I+P EDMP +G D+++NP G+PSRM
Sbjct: 30 KIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRM 89
Query: 918 TVGQLLEA------------------------------------IGGK-----------V 930
VGQ+LE IGG+ V
Sbjct: 90 NVGQILETHLGLAAKGLGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLDEFNDEEV 149
Query: 931 AAL-----KGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGV 985
AL KG + F G E +++ L+ +G+ +++DG T + E + VG
Sbjct: 150 LALANNLKKGVPMATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTRNKSERPVTVGY 209
Query: 986 IYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIE 1045
+Y +L+H+V DK+HARS G ++T+QP G+A+ GG RFGEME L +GAA L E
Sbjct: 210 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 269
Query: 1046 RLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAM 1105
L +SD + R K+Y + + R+ + M+ +F +L+ E++++
Sbjct: 270 MLTVKSD---------------DVNGRTKMYKNIVDGDHRM-EPGMAESFNVLIKEIRSL 313
Query: 1106 VI 1107
I
Sbjct: 314 GI 315
>pir||H83112 DNA-directed RNA polymerase beta chain PA4270 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9950488|gb|AAG07658.1|AE004842_7 (AE004842)
DNA-directed RNA polymerase beta chain [Pseudomonas
aeruginosa]
Length = 1357
Score = 134 bits (335), Expect = 4e-30
Identities = 96/302 (31%), Positives = 144/302 (46%), Gaps = 68/302 (22%)
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917
K+VKV + R + GDK A RHG KGV+ +I+P EDMP +G D+++NP G+PSRM
Sbjct: 1065 KIVKVYLAIKRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRM 1124
Query: 918 TVGQLLEAIGG------------------KVAALK------------------------- 934
VGQ+LE G KVA L+
Sbjct: 1125 NVGQILETHLGLAAKGLGEKINRMLEEQRKVAELRKFLHEIYNEIGGREENLDELGDNEI 1184
Query: 935 ---------GRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGV 985
G + F G E +++ L+ +G+ ++DG TG +FE VG
Sbjct: 1185 LALAKNLRGGVPMATPVFDGAKEREIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGY 1244
Query: 986 IYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIE 1045
+Y +L+H+V DK+HARS G ++T+QP G+A+ GG RFGEME L +GAA L E
Sbjct: 1245 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1304
Query: 1046 RLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLLDELKAM 1105
L +SD + R K+Y + + R+ + M +F +L+ E++++
Sbjct: 1305 MLTVKSD---------------DVNGRTKMYKNIVDGDHRM-EAGMPESFNVLIKEIRSL 1348
Query: 1106 VI 1107
I
Sbjct: 1349 GI 1350
Score = 91.3 bits (223), Expect = 5e-17
Identities = 69/261 (26%), Positives = 121/261 (45%), Gaps = 40/261 (15%)
Query: 246 NDPEVQQILFDNLEDASDITTQQEALEYIGKLVAPGQ-----------------AREYRL 288
ND + + D L+ + + Q EAL I +++ PG+ A Y L
Sbjct: 344 NDIDCGPFISDTLK-IDNTSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERYDL 402
Query: 289 KRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLA 348
+ N + + + K + ++ ++++ GK DD DH N+R+R
Sbjct: 403 SAVGRMKFNRRIGRTEIEGPGVLSKEDIIDVLKT-LVDIRNGKGIVDDIDHLGNRRVRCV 461
Query: 349 GDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNSIRPDVLTERIEHAL 408
G++ ++ FRV ++ + ++ +++ + P L A
Sbjct: 462 GEMAENQFRVGLVRVERAVKERLSMAES----------------EGLMPQDLINAKPVAA 505
Query: 409 ATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPHFEARDLHGTHWGRIC 464
A + G + +SQ +D+ N +S ++H RRV++ L RE+ FE RD+H TH+GR+C
Sbjct: 506 AIKEF-FGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVC 564
Query: 465 PTETPEGPNCGLVKNLALMAQ 485
P ETPEGPN GL+ +LA A+
Sbjct: 565 PIETPEGPNIGLINSLATYAR 585
>pir||B71846 dna-directed RNA polymerase, beta chain - Helicobacter pylori (strain
J99) >gi|4155718|gb|AAD06699.1| (AE001540) DNA-DIRECTED
RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 127 bits (315), Expect = 9e-28
Identities = 90/308 (29%), Positives = 139/308 (44%), Gaps = 74/308 (24%)
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917
K VK+ + R ++GDK A RHG KG++ IVP DMP+T G D+++NP G+PSRM
Sbjct: 1076 KKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRM 1135
Query: 918 TV--------GQLLEAIGGKVAAL------------------------------------ 933
+ G + + G ++A++
Sbjct: 1136 NIGQILEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHVLEN 1195
Query: 934 --------------KGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEA 979
KG ++ F G +EK K E G+ +YDG TG++
Sbjct: 1196 CSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRE 1255
Query: 980 DIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGA 1039
+ VG +Y +LHH+V +K+HARS GP ++T QP G+A GG RFGEME L +GA
Sbjct: 1256 RVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGA 1315
Query: 1040 AMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLL 1099
A L E L +SD + + R Y + + E++ + E+ F +L
Sbjct: 1316 AHTLKEMLTIKSD---------------DIRGRENAYRAI-AKGEQVGESEIPETFYVLT 1359
Query: 1100 DELKAMVI 1107
EL+++ +
Sbjct: 1360 KELQSLAL 1367
Score = 99.5 bits (244), Expect = 2e-19
Identities = 130/570 (22%), Positives = 235/570 (40%), Gaps = 126/570 (22%)
Query: 335 DDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNS 394
DD+DH N+R+R G+LL + ++ K I+ ++T + G +S
Sbjct: 455 DDRDHLGNRRIRAVGELLANELHSGLVKMQKTIKDKLTT---------MSGAF-----DS 500
Query: 395 IRP-DVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPH 449
+ P D++ ++ + + GG+ +SQ +D+TN +S ++H RR+++ L +++
Sbjct: 501 LMPHDLVNSKMITSTIMEFFMGGQ--LSQFMDQTNPLSEVTHKRRLSALGEGGLVKDRVG 558
Query: 450 FEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQIT---------TAVPEEEVKEYLM 500
FEARD+H T++G+ P ETPEG N GL+ L+ ++ V + +V +
Sbjct: 559 FEARDVHPTYYGQFGPIETPEGQNIGLINTLSTFTRVNDLGFIEAPYKKVVDGKVAGETI 618
Query: 501 SLGIVPIEVRRPSPELWRVYLNGVIIGTI------------EDGKALVERIKKDRRSGKI 548
L + + +P + G I+G + E K + + G
Sbjct: 619 YLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNEKSKVTLMDLSSSMLVGVA 678
Query: 549 SDIINVAYYEDVREVYVNSDDGRVRRPLI-----IVENGKPK-LTKEHVQAIKEGRLKWS 602
+ +I ++D + ++ R PL+ IV G K + ++ AIK
Sbjct: 679 ASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEKIIARDSWGAIKAN----- 733
Query: 603 DLVRMGVIEYLDA-------EEEENAYVAMWPWEV---TEEHTHLELMPAAILGLPASLI 652
R GV+E +D+ E +E AY+ + + T ++T +P +G
Sbjct: 734 ---RAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPIVKVG------ 784
Query: 653 PYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYED 712
+ A G M + L L
Sbjct: 785 --DKVEAGQIIADGPSMDRGELAL------------------------------------ 806
Query: 713 RPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEI 772
G+N VA + ++GYN EDAI++++ + + ST E + ++ G ++F
Sbjct: 807 ---GKNVRVAFMPWNGYNFEDAIVVSERITKDDVFTSTHIYEKEVDARELKHG-VEEFTA 862
Query: 773 PSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFL----EERGLGAVSLQ 828
P V+ E+ HLDE G++ + V +L+G+TSP + EER L A+
Sbjct: 863 DIPDVK----EEALAHLDESGIVKVGTYVSAGMILVGKTSPKGEIKSTPEERLLRAIFGD 918
Query: 829 ERRET---SVAVRPSERG-VVDKVIITETG 854
+ S+ PS G V+D + T+ G
Sbjct: 919 KAGHVVNKSLYCPPSLEGTVIDVKVFTKKG 948
>pir||F64669 DNA-directed RNA polymerase, beta subunit - Helicobacter pylori
(strain 26695) >gi|2314357|gb|AAD08242.1| (AE000625)
DNA-directed RNA polymerase, beta subunit (rpoB)
[Helicobacter pylori 26695]
Length = 2890
Score = 124 bits (309), Expect = 4e-27
Identities = 90/308 (29%), Positives = 138/308 (44%), Gaps = 74/308 (24%)
Query: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSR- 916
K VK+ + R ++GDK A RHG KG++ IVP DMP+T G D+++NP G+PSR
Sbjct: 1076 KKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRM 1135
Query: 917 -------MTVGQLLEAIGGKVAAL------------------------------------ 933
M +G + + G ++A +
Sbjct: 1136 NIGQILEMHLGLVGKEFGKQIARMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHALEN 1195
Query: 934 --------------KGRRVDGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEA 979
KG ++ F G +EK K E G+ +YDG TG++
Sbjct: 1196 CSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRE 1255
Query: 980 DIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGA 1039
+ VG +Y +LHH+V +K+HARS GP ++T QP G+A GG RFGEME L +GA
Sbjct: 1256 RVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGA 1315
Query: 1040 AMLLIERLLEESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEERISKVEMSYAFKLLL 1099
A L E L +SD + + R Y + + E++ + E+ F +L
Sbjct: 1316 AHTLKEMLTIKSD---------------DIRGRENAYRAI-AKGEQVGESEIPETFYVLT 1359
Query: 1100 DELKAMVI 1107
EL+++ +
Sbjct: 1360 KELQSLAL 1367
Score = 111 bits (275), Expect = 4e-23
Identities = 134/570 (23%), Positives = 241/570 (41%), Gaps = 126/570 (22%)
Query: 335 DDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRFIRNS 394
DD+DH N+R+R G+LL + ++ K I+ ++T + G +S
Sbjct: 455 DDRDHLGNRRIRAVGELLANELHSGLVKMQKTIKDKLTT---------MSGAF-----DS 500
Query: 395 IRP-DVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTS----PLDREQPH 449
+ P D++ ++ + + GG+ +SQ +D+TN +S ++H RR+++ L +++
Sbjct: 501 LMPHDLVNSKMITSTIMEFFMGGQ--LSQFMDQTNPLSEVTHKRRLSALGEGGLVKDRVG 558
Query: 450 FEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQIT---------TAVPEEEVKEYLM 500
FEARD+H TH+GRICP ETPEG N GL+ L+ ++ V + +V +
Sbjct: 559 FEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGFIEAPYKKVVDGKVVGETI 618
Query: 501 SLGIVPIEVRRPSPELWRVYLNGVIIGTI------------EDGKALVERIKKDRRSGKI 548
L + + +P + G I+G + E K + + G
Sbjct: 619 YLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNEKSKVTLMDLSSSMLVGVA 678
Query: 549 SDIINVAYYEDVREVYVNSDDGRVRRPLI-----IVENGKPK-LTKEHVQAIKEGRLKWS 602
+ +I ++D + ++ R PL+ IV G K + ++ AIK
Sbjct: 679 ASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEKIIARDSWGAIKAN----- 733
Query: 603 DLVRMGVIEYLDA-------EEEENAYVAMWPWEV---TEEHTHLELMPAAILGLPASLI 652
R GV+E +D+ E +E AY+ + + T ++T +P +G
Sbjct: 734 ---RAGVVEKIDSKNIYILGESKEEAYIDAYSLQKNLRTNQNTSFNQVPIVKVG------ 784
Query: 653 PYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYED 712
+ GAG ++ G + ++ L
Sbjct: 785 ----------DKVGAG---------------QIIADGPSMDRGELAL------------- 806
Query: 713 RPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEI 772
G+N VA + ++GYN EDAI++++ + + ST E + ++ G ++F
Sbjct: 807 ---GKNVRVAFMPWNGYNFEDAIVVSECITKDDIFTSTHIYEKEVDARELKHG-VEEFTA 862
Query: 773 PSPTVRGYRGEKYYRHLDEDGLIFPESKVEGKDVLIGRTSPPRFL----EERGLGAVSLQ 828
P V+ E+ HLDE G++ + V +L+G+TSP + EER L A+
Sbjct: 863 DIPDVK----EEALAHLDESGIVKVGTYVSAGMILVGKTSPKGEIKSTPEERLLRAIFGD 918
Query: 829 ERRET---SVAVRPSERG-VVDKVIITETG 854
+ S+ PS G V+D + T+ G
Sbjct: 919 KAGHVVNKSLYCPPSLEGTVIDVKVFTKKG 948
>emb|CAA63892.1| (X94182) RNA polymerase beta subunit [Myxoma virus]
Length = 242
Score = 105 bits (260), Expect = 3e-21
Identities = 58/153 (37%), Positives = 90/153 (57%), Gaps = 6/153 (3%)
Query: 968 MYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFG 1027
+YD T + A +F+G IYY RL H+ DK R RG L +Q EGR R GG++FG
Sbjct: 74 LYDPETDTPYTAKVFMGPIYYLRLRHLTQDKATVRCRGKKTKLIRQANEGRRRGGGIKFG 133
Query: 1028 EMERDVLVGHGAAMLLIERLLE-ESDKTEVWVCENCGHIALEDKRRHKVYCPVCGEEER- 1085
EMERD L+ HGAA + E L + E D +V+VCENCG I + + +K+ C C ++
Sbjct: 134 EMERDCLIAHGAANTITEILKDSEEDYQDVYVCENCGDIT-ANIQGNKI-CIRCSKQNLS 191
Query: 1086 --ISKVEMSYAFKLLLDELKAMVIRPKLNLTER 1116
++KV+ ++ K+ + ++ A ++ K+ +R
Sbjct: 192 TILTKVDTTHVSKVFITQMNARGVKVKMEFEKR 224
>pir||S33885 DNA-directed RNA polymerase (EC 2.7.7.6) I second largest chain -
Euplotes octocarinatus (SGC9)
Length = 546
Score = 105 bits (259), Expect = 3e-21
Identities = 117/498 (23%), Positives = 211/498 (41%), Gaps = 45/498 (9%)
Query: 25 KGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFG---------KIRVGEPEFQ 75
K + R H+DS++ + L + +P+ G +G+P
Sbjct: 17 KNIARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLTLWYDSFELGQPSLG 76
Query: 76 EPHGQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLY 135
E LYP + R R +TY+ PL+ + + +V++G++P M + K C L
Sbjct: 77 EIDYDSHILYPSECRQRKMTYTIPLFATIFKKFDDEMVDNFKVKLGDIPTMGRKKFCNLK 136
Query: 136 GLSDDELRQLGEDPKDPGGYFIINGSERVIVSIEDIAPNRT---------LVEKDERQEK 186
GL+ EL + GED + GGYFI+NG+E+VI + I P R +E+ +
Sbjct: 137 GLTKKELAKRGEDMLEFGGYFIVNGNEKVIRML--IVPKRNFPIAFKRSKFLERGKDFTD 194
Query: 187 YIAKVFSYRHGYRA-LVTVERKKDGILYVGIPNVPKP--VKFVYVMRALGLERDKDIVDA 243
Y ++ R + A +T+ DG + + + + + + +++AL D+ I +
Sbjct: 195 YGVQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQKQEFLIPIILILKALKNCTDRQIYER 254
Query: 244 VGNDPEVQQILFDNLE------DASDITTQQEALEYIG---KLVAPGQAREYRLKRAEYV 294
+ Q+ + D +E +I ++ IG ++V G E A
Sbjct: 255 IVKGNFNQRQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAGITSETSDIDAG-- 312
Query: 295 IDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYANKRLRLAGDL-LK 353
D L HI + + K L +M K+ + + D+ D A + + L G L L+
Sbjct: 313 -DLFLSKHICIHTDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLLGGHLYLQ 371
Query: 354 DLFRVAFSQLVKDIQYQMTKTYQRRG-EKYVFGNIHRFIRNSIRPDVLTERIEHALATGA 412
L F L +++ ++ K +R + F ++ + + ++ +R+E+ LATG
Sbjct: 372 ILSEKLFDCLHINLRARLNKELKRHNFDPMKFRDVLTNQKINCGIGLIGKRMENFLATGN 431
Query: 413 WPG-------GRTGVSQLLDRTNYVSTLSHLRRV-TSPLDREQPHFEARDLHGTHWGRIC 464
+G + D+ N + LSH R + EQ R L WG IC
Sbjct: 432 LISRTNLDLMQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTTSVRKLLPESWGFIC 491
Query: 465 PTETPEGPNCGLVKNLAL 482
P TP+G CGL+ ++++
Sbjct: 492 PVHTPDGAPCGLLNHISM 509
>gb|AAC47680.1| (U89650) RNA polymerase II second largest subunit [Euplotes
crassus]
Length = 205
Score = 103 bits (255), Expect = 1e-20
Identities = 62/199 (31%), Positives = 112/199 (56%), Gaps = 37/199 (18%)
Query: 8 EVTPDDLWIVMESYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPD-------- 59
E+T +D W ++++Y+Q+ GLV Q + S++ F+ +Q++V E I +P+
Sbjct: 8 EITQEDAWALIKAYFQQHGLVSQQISSFDRFLSYTIQDIVAE-NSIMSIVPEKQYAPGVR 66
Query: 60 ---------------FEVKFGKIRVGE-PEFQEPHGQRKPLYPMDARIRNLTYSAPLYLE 103
+E++ G+++V E P F+E + ++P +AR+RNLTY +Y+E
Sbjct: 67 LYLTLGNENQDRDLRYEIELGQVKVNEKPRFKEYDDKYNVIFPNEARLRNLTYQTSVYVE 126
Query: 104 M-----IPVIRGIEQ-----EPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPG 153
+ + +G+E+ + EV IG++P+M+KS C L + ++ ++ E D G
Sbjct: 127 VTKRDKVTNSKGVEEVLEKRKEKEVYIGKVPVMIKSAFCSLNRIENE--YEMKECFFDQG 184
Query: 154 GYFIINGSERVIVSIEDIA 172
GYFIINGSE+V+V+ E +A
Sbjct: 185 GYFIINGSEKVLVAHEKMA 203
>gb|AAC47431.1| (U46561) RNA polymerase II subunit 2 [Tetrahymena thermophila]
Length = 123
Score = 98.3 bits (241), Expect = 4e-19
Identities = 51/115 (44%), Positives = 67/115 (57%), Gaps = 4/115 (3%)
Query: 1003 SRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENC 1062
SRGPV + +QPT GR+R GGLRFGEMERD ++ HG + L ER SD+ VC C
Sbjct: 1 SRGPVVAIVRQPTHGRSRGGGLRFGEMERDCIIAHGTSNFLKERTFGVSDQFRTHVCSRC 60
Query: 1063 GHIALEDKRRHKVYCPVCGEEE----RISKVEMSYAFKLLLDELKAMVIRPKLNL 1113
G A D HK C C + + +I +V + YA K L+ EL AM I P++ +
Sbjct: 61 GLFAKADVTNHKYDCTGCSQGDKKHYKIVQVYLPYAAKQLIQELMAMHIVPRIKV 115
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.411
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435391263
Number of Sequences: 2977
Number of extensions: 20102431
Number of successful extensions: 49342
Number of sequences better than 1.0e-10: 365
Number of HSP's better than 0.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 47124
Number of HSP's gapped (non-prelim): 930
length of query: 1117
length of database: 189,106,746
effective HSP length: 58
effective length of query: 1059
effective length of database: 154,394,500
effective search space: 163503775500
effective search space used: 163503775500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 170 (70.6 bits)