BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0427 (rps12P) DE:SSU ribosomal protein S12P (rps12P)
(147 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75182 ribosomal protein S12P PAB0427 - Pyrococcus abyssi (... 298 3e-80
sp|O59229|RS12_PYRHO 30S RIBOSOMAL PROTEIN S12P >gi|7440347|pir|... 296 1e-79
sp|P29161|RS12_THECE 30S RIBOSOMAL PROTEIN S12P >gi|99243|pir||S... 279 9e-75
sp|P54062|RS12_METJA 30S RIBOSOMAL PROTEIN S12P >gi|2826360|gb|A... 220 4e-57
pir||E64430 ribosomal protein S12 - Methanococcus jannaschii 220 4e-57
sp|O27129|RS12_METTH 30S RIBOSOMAL PROTEIN S12P >gi|7440348|pir|... 215 1e-55
sp|Q9YAU5|RS12_AERPE 30S RIBOSOMAL PROTEIN S12P >gi|7440365|pir|... 211 3e-54
gi|11499476 SSU ribosomal protein S12P (rps12P) [Archaeoglobus f... 211 4e-54
emb|CAC11239.1| (AL445063) probable ribosomal protein S12 [Therm... 207 4e-53
sp|P11524|RS12_SULAC 30S RIBOSOMAL PROTEIN S12P 205 3e-52
sp|P14040|RS12_METVA 30S RIBOSOMAL PROTEIN S12P >gi|70952|pir||R... 203 1e-51
gb|AAK40562.1| SSU ribosomal protein S12AB (rpS12AB) [Sulfolobus... 200 6e-51
sp|P15756|RS12_HALHA 30S RIBOSOMAL PROTEIN S12P (HMAS12) >gi|810... 199 1e-50
sp|P15355|RS12_HALMO 30S RIBOSOMAL PROTEIN S12P >gi|81083|pir||S... 198 4e-50
sp|P39573|RS12_SULSO 30S RIBOSOMAL PROTEIN S12P >gi|7440376|pir|... 192 1e-48
emb|CAB39014.1| (AL034558) predicted using hexExon; MAL3P2.27 (P... 167 5e-41
emb|CAB56815.1| (AJ249691) ribosomal protein S28 [Aspergillus ni... 165 2e-40
pir||R3UC12 ribosomal protein S12 - Sulfolobus acidocaldarius >g... 164 3e-40
emb|CAC18140.1| (AL451012) probable ribosomal protein S28 [Neuro... 164 3e-40
gi|6321556 Ribosomal protein S23A (S28A) (rp37) (YS14); Rps23ap ... 162 2e-39
sp|Q19877|RS23_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S23 >gi|7500... 161 4e-39
dbj|BAA19233.1| (AB001288) ribosomal protein S23 homolog [Schizo... 158 3e-38
sp|P79057|RS23_SCHPO 40S RIBOSOMAL PROTEIN S23 >gi|7489981|pir||... 158 3e-38
emb|CAC14789.1| (AJ291613) 40S ribosomal protein S23 [Lumbricus ... 157 6e-38
sp|P90707|RS23_BRUMA 40S RIBOSOMAL PROTEIN S23 >gi|1754684|gb|AA... 157 8e-38
gi|4506701 ribosomal protein S23 [Homo sapiens] >gi|11417289|ref... 155 3e-37
gb|AAF58277.1| (AE003815) CG8415 gene product [Drosophila melano... 150 7e-36
pir||T48317 hypothetical protein F9G14.270 - Arabidopsis thalian... 148 2e-35
sp|P46297|RS23_FRAAN 40S RIBOSOMAL PROTEIN S23 (S12) >gi|1362041... 148 3e-35
gb|AAF26742.1|AF220539_1 (AF220539) 40s ribosomal protein S23 [E... 148 4e-35
gb|AAF23298.1|AC016661_23 (AC016661) putative 40S ribosomal prot... 143 7e-34
gb|AAG13288.1|AF266168_1 (AF266168) 40S ribosomal protein S23 [G... 143 1e-33
emb|CAC04007.1| (AL391394) probable ribosomal protein S23 [Leish... 142 2e-33
sp|P06147|RS12_TETTH 40S RIBOSOMAL PROTEIN S12 >gi|84359|pir||A2... 132 1e-30
sp|P49201|RS23_ARATH 40S RIBOSOMAL PROTEIN S23 (S12) 106 2e-22
sp|O70089|RS12_AQUAE 30S RIBOSOMAL PROTEIN S12 >gi|7440351|pir||... 76 2e-13
dbj|BAA25822.1| (AB007158) ribosomal protein S23 [Homo sapiens] 75 4e-13
sp|Q9X1J3|RS12_THEMA 30S RIBOSOMAL PROTEIN S12 >gi|7440374|pir||... 75 4e-13
sp|P06368|RR12_MARPO CHLOROPLAST 30S RIBOSOMAL PROTEIN S12 >gi|7... 71 6e-12
gi|11466871 ribosomal protein S12 [Oryza sativa] >gi|133748|sp|P... 71 6e-12
gi|11467215 ribosomal protein S12 [Zea mays] >gi|1173189|sp|P123... 71 6e-12
sp|P42344|RR12_SPIMX CHLOROPLAST 30S RIBOSOMAL PROTEIN S12 >gi|9... 71 6e-12
sp|P48856|RR12_HORVU CHLOROPLAST 30S RIBOSOMAL PROTEIN S12 >gi|2... 70 1e-11
gi|11465755 30S ribosomal protein S12 [Porphyra purpurea] >gi|17... 70 1e-11
sp|P07134|RR12_SOYBN CHLOROPLAST 30S RIBOSOMAL PROTEIN S12 >gi|3... 69 2e-11
sp|P14149|RR12_CHLRE CHLOROPLAST 30S RIBOSOMAL PROTEIN S12 >gi|8... 69 2e-11
sp|P97222|RS12_STRCO 30S RIBOSOMAL PROTEIN S12 >gi|1685024|gb|AA... 69 2e-11
gi|7525057 ribosomal protein S12 [Arabidopsis thaliana] >gi|7525... 69 2e-11
gi|11467445 30S ribosomal protein S12 [Odontella sinensis] >gi|1... 68 4e-11
emb|CAB67182.1| (AJ271079) ribosomal protein S12 [Oenothera elat... 68 4e-11
pir||R3NT12 ribosomal protein S12 - common tobacco chloroplast 68 5e-11
gi|11497482 ribosomal protein S12 [Prototheca wickerhamii] >gi|1... 68 5e-11
gi|11466995 30S ribosomal protein S12 [Euglena gracilis] >gi|133... 68 7e-11
gi|11467352 ribosomal protein S12 [Cyanophora paradoxa] >gi|1337... 67 9e-11
sp|P33565|RS12_MYCIT 30S RIBOSOMAL PROTEIN S12 >gi|479856|pir||S... 67 9e-11
sp|P41195|RS12_MYCSM 30S RIBOSOMAL PROTEIN S12 >gi|511651|gb|AAA... 67 9e-11
sp|P46296|RR12_CUSEU CHLOROPLAST 30S RIBOSOMAL PROTEIN S12 >gi|1... 67 9e-11
pir||S72301 ribosomal protein S12 - Plasmodium falciparum plasti... 67 9e-11
sp|P74230|RS12_SYNY3 30S RIBOSOMAL PROTEIN S12 >gi|7440353|pir||... 67 9e-11
sp|O51348|RS12_BORBU 30S RIBOSOMAL PROTEIN S12 >gi|7440359|pir||... 67 9e-11
>pir||F75182 ribosomal protein S12P PAB0427 - Pyrococcus abyssi (strain Orsay)
>gi|5458051|emb|CAB49541.1| (AJ248284) SSU ribosomal
protein S12P (rps12P) [Pyrococcus abyssi]
Length = 147
Score = 298 bits (754), Expect = 3e-80
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAV 60
MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAV
Sbjct: 1 MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAV 60
Query: 61 EAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIP 120
EAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIP
Sbjct: 61 EAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIP 120
Query: 121 GIRYKVVKVNRVSLKELVKGRKEKPRR 147
GIRYKVVKVNRVSLKELVKGRKEKPRR
Sbjct: 121 GIRYKVVKVNRVSLKELVKGRKEKPRR 147
>sp|O59229|RS12_PYRHO 30S RIBOSOMAL PROTEIN S12P >gi|7440347|pir||D71031 probable
ribosomal protein S12 - Pyrococcus horikoshii
>gi|3257969|dbj|BAA30652.1| (AP000006) 150aa long
hypothetical 30S ribosomal protein S12 [Pyrococcus
horikoshii]
Length = 150
Score = 296 bits (749), Expect = 1e-79
Identities = 146/147 (99%), Positives = 146/147 (99%)
Query: 1 MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAV 60
MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAV
Sbjct: 4 MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAV 63
Query: 61 EAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIP 120
EAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAI FIDEHDEVIIEGIGGPKGGSMGDIP
Sbjct: 64 EAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGDIP 123
Query: 121 GIRYKVVKVNRVSLKELVKGRKEKPRR 147
GIRYKVVKVNRVSLKELVKGRKEKPRR
Sbjct: 124 GIRYKVVKVNRVSLKELVKGRKEKPRR 150
>sp|P29161|RS12_THECE 30S RIBOSOMAL PROTEIN S12P >gi|99243|pir||S18713 ribosomal protein
S12 - Thermococcus celer >gi|48145|emb|CAA47727.1|
(X67313) ribosomal protein S12 [Thermococcus celer]
>gi|58412|emb|CAA42849.1| (X60305) ribosomal protein S12
[Thermococcus celer]
Length = 147
Score = 279 bits (707), Expect = 9e-75
Identities = 140/147 (95%), Positives = 141/147 (95%)
Query: 1 MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAV 60
M GKKAP GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQA+GIVLEKIAV
Sbjct: 1 MAGKKAPYGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQAKGIVLEKIAV 60
Query: 61 EAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIP 120
EAKQPNS MRKAVRVQLIKNGKVVTAF PGDGAI IDEHDEVIIEGIGGPKGGSMGDIP
Sbjct: 61 EAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIP 120
Query: 121 GIRYKVVKVNRVSLKELVKGRKEKPRR 147
GIRYKVVKVNRVSLKELVKGRKEKPRR
Sbjct: 121 GIRYKVVKVNRVSLKELVKGRKEKPRR 147
>sp|P54062|RS12_METJA 30S RIBOSOMAL PROTEIN S12P >gi|2826360|gb|AAB99050.1| (U67547) SSU
ribosomal protein S12P (rpsL) [Methanococcus jannaschii]
Length = 148
Score = 220 bits (556), Expect = 4e-57
Identities = 108/148 (72%), Positives = 125/148 (83%), Gaps = 1/148 (0%)
Query: 1 MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAV 60
M G K+P GEFAGRKL+LKRK RW D Y RRVL+LKEK DPLEGAP ARGIV+EK+ +
Sbjct: 1 MSGSKSPRGEFAGRKLRLKRKWCRWHDYNYVRRVLKLKEKYDPLEGAPMARGIVIEKVGL 60
Query: 61 EAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKG-GSMGDI 119
EAKQPNS +RK VRVQLIKNG+VVTAFCPG+ AI FIDEHDEVIIEGIGGPKG + GDI
Sbjct: 61 EAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDI 120
Query: 120 PGIRYKVVKVNRVSLKELVKGRKEKPRR 147
PG++YKV+ V R SL+ELV+GR+EK +R
Sbjct: 121 PGVKYKVIMVGRNSLRELVRGRQEKIKR 148
>pir||E64430 ribosomal protein S12 - Methanococcus jannaschii
Length = 151
Score = 220 bits (556), Expect = 4e-57
Identities = 108/148 (72%), Positives = 125/148 (83%), Gaps = 1/148 (0%)
Query: 1 MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAV 60
M G K+P GEFAGRKL+LKRK RW D Y RRVL+LKEK DPLEGAP ARGIV+EK+ +
Sbjct: 4 MSGSKSPRGEFAGRKLRLKRKWCRWHDYNYVRRVLKLKEKYDPLEGAPMARGIVIEKVGL 63
Query: 61 EAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKG-GSMGDI 119
EAKQPNS +RK VRVQLIKNG+VVTAFCPG+ AI FIDEHDEVIIEGIGGPKG + GDI
Sbjct: 64 EAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDI 123
Query: 120 PGIRYKVVKVNRVSLKELVKGRKEKPRR 147
PG++YKV+ V R SL+ELV+GR+EK +R
Sbjct: 124 PGVKYKVIMVGRNSLRELVRGRQEKIKR 151
>sp|O27129|RS12_METTH 30S RIBOSOMAL PROTEIN S12P >gi|7440348|pir||C69007 ribosomal
protein S12 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622154|gb|AAB85546.1| (AE000876)
ribosomal protein S23 (E.coli S12) [Methanobacterium
thermoautotrophicum]
Length = 141
Score = 215 bits (543), Expect = 1e-55
Identities = 102/139 (73%), Positives = 118/139 (84%)
Query: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSG 68
G FA +KLK KR+KF+W D YKRR LRL K+DPLEGAPQARGIV+EK+ +EAKQPNS
Sbjct: 3 GLFAAKKLKSKRQKFKWKDTHYKRRSLRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSA 62
Query: 69 MRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK 128
+RK VRVQLIKNGK +TAF PGDGAI FIDEHDEV++EGIGGP G SMGDIPG+R+KV K
Sbjct: 63 IRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVVVEGIGGPSGRSMGDIPGVRWKVTK 122
Query: 129 VNRVSLKELVKGRKEKPRR 147
VN VSL+E+VKG+ EKP R
Sbjct: 123 VNNVSLQEMVKGKIEKPVR 141
>sp|Q9YAU5|RS12_AERPE 30S RIBOSOMAL PROTEIN S12P >gi|7440365|pir||H72570 probable
ribosomal protein S12 APE1849 - Aeropyrum pernix
(strain K1) >gi|5105540|dbj|BAA80853.1| (AP000062) 147aa
long hypothetical 30S ribosomal protein S12 [Aeropyrum
pernix]
Length = 147
Score = 211 bits (532), Expect = 3e-54
Identities = 103/147 (70%), Positives = 120/147 (81%)
Query: 1 MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAV 60
M GKKAP G FA RKL+ KR KFRWS ++ R+L LK K DPLEGAP ARGIVLEK+ V
Sbjct: 1 MTGKKAPAGLFAARKLRRKRLKFRWSQREFRIRMLDLKRKYDPLEGAPMARGIVLEKVGV 60
Query: 61 EAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIP 120
EA+QPNS +RK VRVQL+KN KVVTAF P DG I ++DEHDEVIIEGIGGP+G SMGDIP
Sbjct: 61 EARQPNSALRKCVRVQLVKNKKVVTAFVPRDGGILYVDEHDEVIIEGIGGPRGRSMGDIP 120
Query: 121 GIRYKVVKVNRVSLKELVKGRKEKPRR 147
G+RY+VV VN VSLK L +G+K+KPR+
Sbjct: 121 GVRYRVVMVNGVSLKALWEGKKQKPRK 147
>gi|11499476 SSU ribosomal protein S12P (rps12P) [Archaeoglobus fulgidus]
>gi|6226058|sp|O28387|RS12_ARCFU 30S RIBOSOMAL PROTEIN
S12P >gi|7440349|pir||C69486 ribosomal protein S12P -
Archaeoglobus fulgidus >gi|2648653|gb|AAB89362.1|
(AE000972) SSU ribosomal protein S12P (rps12P)
[Archaeoglobus fulgidus]
Length = 144
Score = 211 bits (531), Expect = 4e-54
Identities = 104/139 (74%), Positives = 115/139 (81%)
Query: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSG 68
G FA RKL RKKFRWSD R+ RR L L K+DPLEGAP ARGIVLEKI +EA+QPNS
Sbjct: 6 GLFAARKLMENRKKFRWSDRRFVRRTLGLAAKADPLEGAPMARGIVLEKIGIEARQPNSA 65
Query: 69 MRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK 128
+RKAVRVQLIKNG+ +TAFCPGDGAI FIDEHDEVI+E IGG G SMGDIPG+RYKVVK
Sbjct: 66 IRKAVRVQLIKNGRQITAFCPGDGAINFIDEHDEVIVEKIGGRMGRSMGDIPGVRYKVVK 125
Query: 129 VNRVSLKELVKGRKEKPRR 147
VN SL+ELV+GRKEK R
Sbjct: 126 VNNTSLRELVRGRKEKRLR 144
>emb|CAC11239.1| (AL445063) probable ribosomal protein S12 [Thermoplasma
acidophilum]
Length = 142
Score = 207 bits (522), Expect = 4e-53
Identities = 102/140 (72%), Positives = 115/140 (81%)
Query: 8 NGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNS 67
NG AGRKL RKKFRWSD YKRRVL+LK KSDPLEGAPQA+GI +EK+ +EAKQPNS
Sbjct: 3 NGINAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNS 62
Query: 68 GMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVV 127
+RK V+VQLIKNG+ +TAF GDGAI +IDEHDEV +EGIGG G S GDIPG+RYKVV
Sbjct: 63 AIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVV 122
Query: 128 KVNRVSLKELVKGRKEKPRR 147
VN +SLKELVKGRKEK R
Sbjct: 123 AVNGISLKELVKGRKEKTVR 142
>sp|P11524|RS12_SULAC 30S RIBOSOMAL PROTEIN S12P
Length = 151
Score = 205 bits (515), Expect = 3e-52
Identities = 97/142 (68%), Positives = 115/142 (80%)
Query: 1 MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAV 60
M G K+P G FA RKL+LKR KF WS +KRR+L LKEK DPLEGAP ARGIVLEK+ +
Sbjct: 1 MAGSKSPKGLFAARKLRLKRLKFSWSQRSFKRRMLALKEKFDPLEGAPMARGIVLEKVGI 60
Query: 61 EAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIP 120
E++QPNS +RKAVRVQL+KNG++VTAF PGDG + FIDEHDEV+I GIGG G SMGD+P
Sbjct: 61 ESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLP 120
Query: 121 GIRYKVVKVNRVSLKELVKGRK 142
G+RYKVV VN VSL L KG++
Sbjct: 121 GVRYKVVMVNGVSLDALYKGKE 142
>sp|P14040|RS12_METVA 30S RIBOSOMAL PROTEIN S12P >gi|70952|pir||R3MX12 ribosomal protein
S12 - Methanococcus vannielii >gi|44784|emb|CAA34089.1|
(X15970) S12 ribosomal protein (AA 1-147) [Methanococcus
vannielii]
Length = 147
Score = 203 bits (510), Expect = 1e-51
Identities = 97/147 (65%), Positives = 117/147 (78%)
Query: 1 MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAV 60
M G K+P GEFAGRKL LKRK RW +Y R L LK K+DPL GAP RGIV+EK+ +
Sbjct: 1 MSGSKSPKGEFAGRKLLLKRKATRWQHYKYVNRELGLKVKADPLGGAPMGRGIVVEKVGL 60
Query: 61 EAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIP 120
EAKQPNS +RK V+VQLIKNG+VVTAF PG+ AI FIDEHDEV+IEGIGGP G + GDIP
Sbjct: 61 EAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIP 120
Query: 121 GIRYKVVKVNRVSLKELVKGRKEKPRR 147
G+RYKV+ V + S++ELV+GR+EK +R
Sbjct: 121 GVRYKVLMVGKNSIRELVRGRQEKVKR 147
>gb|AAK40562.1| SSU ribosomal protein S12AB (rpS12AB) [Sulfolobus solfataricus]
Length = 150
Score = 200 bits (504), Expect = 6e-51
Identities = 95/143 (66%), Positives = 116/143 (80%)
Query: 5 KAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQ 64
K+P G +A RKL+LKR KFR S +YK ++L+LKEK DPL GAP ARGIVLEK+ +E++Q
Sbjct: 8 KSPKGIYAARKLRLKRLKFRRSQRKYKTKILKLKEKYDPLGGAPMARGIVLEKVGIESRQ 67
Query: 65 PNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRY 124
PNS +RK VRVQL++NG+VVTAF PGDG + FIDEHDEVII GIGG G SMGD+PG+RY
Sbjct: 68 PNSAVRKCVRVQLVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRY 127
Query: 125 KVVKVNRVSLKELVKGRKEKPRR 147
KV+ VN VSL L KG+K+KP R
Sbjct: 128 KVIMVNGVSLDALYKGKKQKPVR 150
>sp|P15756|RS12_HALHA 30S RIBOSOMAL PROTEIN S12P (HMAS12) >gi|81067|pir||S03581 ribosomal
protein S12 [similarity] - Halobacterium salinarum
>gi|43545|emb|CAA40429.1| (X57144) ribosomal protein
HhS12 [Halobacterium halobium]
>gi|10582040|gb|AAG20689.1| (AE005138) 30S ribosomal
protein S12P; Rps12p [Halobacterium sp. NRC-1]
Length = 142
Score = 199 bits (502), Expect = 1e-50
Identities = 99/140 (70%), Positives = 111/140 (78%)
Query: 8 NGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNS 67
NG++A RKLK R++ RWSD Y RR L +KSDPLEGAPQ RGIVLEK+ +EAKQPNS
Sbjct: 3 NGKYAARKLKKDRQQRRWSDSEYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNS 62
Query: 68 GMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVV 127
+RK VRVQLIKNGK VTAFCPGDGAI FIDEHDEV I GIGG KG +MGD+ G+ YKV
Sbjct: 63 AIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVE 122
Query: 128 KVNRVSLKELVKGRKEKPRR 147
KVN VSL ELV+G EKP R
Sbjct: 123 KVNGVSLIELVRGNAEKPVR 142
>sp|P15355|RS12_HALMO 30S RIBOSOMAL PROTEIN S12P >gi|81083|pir||S03582 ribosomal protein
S12 - Halococcus morrhuae >gi|43624|emb|CAA40434.1|
(X57145) ribosomal protein HcS12 [Halococcus morrhuae]
Length = 142
Score = 198 bits (497), Expect = 4e-50
Identities = 97/140 (69%), Positives = 110/140 (78%)
Query: 8 NGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNS 67
NG++A RKLK R+ RWSD +Y RR LKEK+D LEGAPQ RGIVLEK+ +EAKQPNS
Sbjct: 3 NGKYAARKLKKDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNS 62
Query: 68 GMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVV 127
+RK VRVQLIKNG+ VTAFCPGDGAI FIDEHDEV I GIGG KG +MGD+ + YKV
Sbjct: 63 AIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSAVNYKVE 122
Query: 128 KVNRVSLKELVKGRKEKPRR 147
KVN VSL ELV+G EKP R
Sbjct: 123 KVNGVSLIELVRGNAEKPVR 142
>sp|P39573|RS12_SULSO 30S RIBOSOMAL PROTEIN S12P >gi|7440376|pir||T11745 ribosomal
protein S12 - Sulfolobus solfataricus
>gi|809768|emb|CAA54160.1| (X76767) ribosomal protein
S12 [Sulfolobus solfataricus]
Length = 147
Score = 192 bits (484), Expect = 1e-48
Identities = 92/147 (62%), Positives = 115/147 (77%)
Query: 1 MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAV 60
M K+ G ++ RKL+LKR KFR S +YK ++L+LKEK +PL GAP ARGIVLEK+ +
Sbjct: 1 MSKSKSSKGIYSARKLRLKRLKFRRSQRKYKTKILKLKEKYNPLGGAPMARGIVLEKVGI 60
Query: 61 EAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIP 120
E++QPNS +RK VRVQL++NG+VVTAF PGDG + FIDEHDEVII GIGG G SMGD+P
Sbjct: 61 ESRQPNSAVRKCVRVQLVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLP 120
Query: 121 GIRYKVVKVNRVSLKELVKGRKEKPRR 147
G+RYKV+ N VSL L KG+K+KP R
Sbjct: 121 GVRYKVINGNGVSLDALYKGKKQKPVR 147
>emb|CAB39014.1| (AL034558) predicted using hexExon; MAL3P2.27 (PFC0290w), 40S
Ribosomal protein S23, len: 146 aa; Similarity to
ribosomal S23 proteins. C.elegans 40S ribosomal protein
S23 (WP:F28D1.7) BLAST Score:609, sum P(1) = 1.3e-59;
78% identity in 142 aa overlap
Length = 145
Score = 167 bits (419), Expect = 5e-41
Identities = 82/144 (56%), Positives = 107/144 (73%), Gaps = 1/144 (0%)
Query: 3 GKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEA 62
G P+G A RKL+++R+ RW+D YK+ L + KS+P G+ A+GIV+EK+A+EA
Sbjct: 2 GSGKPSGLRAARKLRIRRRTQRWADKSYKKSHLGTRWKSNPFRGSSHAKGIVVEKVAIEA 61
Query: 63 KQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGI 122
KQPNS RK VRVQLIKNGK +TAF PGDG + FIDE+DEV++ G G G S+GD+PG+
Sbjct: 62 KQPNSAYRKCVRVQLIKNGKKITAFVPGDGCLNFIDENDEVLVSGF-GRSGHSVGDLPGV 120
Query: 123 RYKVVKVNRVSLKELVKGRKEKPR 146
++KVVKV RVSL L K +KEKPR
Sbjct: 121 KFKVVKVARVSLLALFKEKKEKPR 144
>emb|CAB56815.1| (AJ249691) ribosomal protein S28 [Aspergillus niger]
Length = 145
Score = 165 bits (414), Expect = 2e-40
Identities = 84/144 (58%), Positives = 104/144 (71%), Gaps = 1/144 (0%)
Query: 3 GKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEA 62
GK P G A RKL R++ RW+D+ YK+R+L KS P GA A+GIVLEK+ VEA
Sbjct: 2 GKGQPRGLNAARKLATTRRENRWADLHYKKRLLGTAYKSSPFGGASHAKGIVLEKVGVEA 61
Query: 63 KQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGI 122
KQPNS +RK V+VQLIKNGK VTAF P DG + FIDE+DEV++ G G KG + GDIPG+
Sbjct: 62 KQPNSAIRKCVKVQLIKNGKKVTAFVPNDGCLNFIDENDEVLLAGF-GRKGKAKGDIPGV 120
Query: 123 RYKVVKVNRVSLKELVKGRKEKPR 146
R+KVVKV+ V L L + +KEKPR
Sbjct: 121 RFKVVKVSGVGLLALWREKKEKPR 144
>pir||R3UC12 ribosomal protein S12 - Sulfolobus acidocaldarius
>gi|46674|emb|CAA32929.1| (X14818) S12 ribosomal protein
(AA 1-118) [Sulfolobus acidocaldarius]
Length = 118
Score = 164 bits (412), Expect = 3e-40
Identities = 77/109 (70%), Positives = 92/109 (83%)
Query: 34 VLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGA 93
+L LKEK DPLEGAP ARGIVLEK+ +E++QPNS +RKAVRVQL+KNG++VTAF PGDG
Sbjct: 1 MLALKEKFDPLEGAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGG 60
Query: 94 IKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRK 142
+ FIDEHDEV+I GIGG G SMGD+PG+RYKVV VN VSL L KG++
Sbjct: 61 VNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVVMVNGVSLDALYKGKE 109
>emb|CAC18140.1| (AL451012) probable ribosomal protein S28 [Neurospora crassa]
Length = 145
Score = 164 bits (412), Expect = 3e-40
Identities = 86/146 (58%), Positives = 105/146 (71%), Gaps = 2/146 (1%)
Query: 1 MPGKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAV 60
M G K P G A RKL+ R++ RWSD+ YK+R L KS P G+ A+GIVLEK+ V
Sbjct: 1 MSGGK-PRGLNAARKLRNNRREQRWSDLHYKKRALGTAFKSSPFGGSSHAKGIVLEKVGV 59
Query: 61 EAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIP 120
EAKQPNS +RK VRVQLIKNGK VTAF P DG + F+DE+DEV++ G G KG + GDIP
Sbjct: 60 EAKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGF-GRKGKAKGDIP 118
Query: 121 GIRYKVVKVNRVSLKELVKGRKEKPR 146
G+R+KVVKV+ V L L K +KEKPR
Sbjct: 119 GVRFKVVKVSGVGLLALWKEKKEKPR 144
>gi|6321556 Ribosomal protein S23A (S28A) (rp37) (YS14); Rps23ap [Saccharomyces
cerevisiae] >gi|6325389|ref|NP_015457.1| Ribosomal
protein S23B (S28B) (rp37) (YS14); Rps23bp
[Saccharomyces cerevisiae]
>gi|417716|sp|P32827|RS23_YEAST 40S RIBOSOMAL PROTEIN
S23 (S28) (YS14) (RP37) >gi|422182|pir||A46703 ribosomal
protein S23.e, cytosolic - yeast (Saccharomyces
cerevisiae) >gi|172498|gb|AAA16235.1| (M96570) ribosomal
protein S28 [Saccharomyces cerevisiae]
>gi|172500|gb|AAA16236.1| (M96571) ribosomal protein S28
[Saccharomyces cerevisiae] >gi|1066485|gb|AAB68273.1|
(U40829) 40S ribosomal protein S28 (Swiss Prot.
accession number P32827) [Saccharomyces cerevisiae]
>gi|1323191|emb|CAA97128.1| (Z72903) ORF YGR118w
[Saccharomyces cerevisiae]
Length = 145
Score = 162 bits (406), Expect = 2e-39
Identities = 81/144 (56%), Positives = 105/144 (72%), Gaps = 1/144 (0%)
Query: 3 GKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEA 62
GK P G + RKL++ R+ RW++ YK+R+L KS P G+ A+GIVLEK+ +E+
Sbjct: 2 GKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIES 61
Query: 63 KQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGI 122
KQPNS +RK VRVQLIKNGK VTAF P DG + F+DE+DEV++ G G KG + GDIPG+
Sbjct: 62 KQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGF-GRKGKAKGDIPGV 120
Query: 123 RYKVVKVNRVSLKELVKGRKEKPR 146
R+KVVKV+ VSL L K +KEKPR
Sbjct: 121 RFKVVKVSGVSLLALWKEKKEKPR 144
>sp|Q19877|RS23_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S23 >gi|7500074|pir||T21497
hypothetical protein F28D1.7 - Caenorhabditis elegans
>gi|3876374|emb|CAA94601.1| (Z70684) Similarity to Human
40S ribosomal protein S23 (SW:RS23_HUMAN), contains
similarity to Pfam domain: PF00164 (Ribosomal protein
S12), Score=273.2, E-value=1.1e-78, N=1~cDNA EST
EMBL:M80070 comes from this gene; cDNA EST EMBL:T02217
comes from th>
Length = 143
Score = 161 bits (403), Expect = 4e-39
Identities = 79/140 (56%), Positives = 102/140 (72%), Gaps = 1/140 (0%)
Query: 7 PNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPN 66
P G RKLK R++ RW+D RYK+ + + KS+P GA A+GIVLEKI VEAKQPN
Sbjct: 4 PKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPN 63
Query: 67 SGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKV 126
S +RK VRVQLIKNGK +TAF P DG + F++E+DEV++ G G G ++GDIPG+R+K+
Sbjct: 64 SAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGF-GRSGHAVGDIPGVRFKI 122
Query: 127 VKVNRVSLKELVKGRKEKPR 146
VKV SL L KG+KE+PR
Sbjct: 123 VKVANTSLIALFKGKKERPR 142
>dbj|BAA19233.1| (AB001288) ribosomal protein S23 homolog [Schizosaccharomyces
pombe]
Length = 148
Score = 158 bits (396), Expect = 3e-38
Identities = 81/140 (57%), Positives = 100/140 (70%), Gaps = 1/140 (0%)
Query: 7 PNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPN 66
P G A RKL+ R++ RW+D YK+R+L KS P G+ A+GIV+EKI VEAKQPN
Sbjct: 9 PAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPN 68
Query: 67 SGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKV 126
S +RK VRVQLIKNGK VTAF P DG + F+DE+DEV++ G G KG + GDIPG+R+KV
Sbjct: 69 SAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGF-GRKGKAKGDIPGVRFKV 127
Query: 127 VKVNRVSLKELVKGRKEKPR 146
VKV V L L +KEKPR
Sbjct: 128 VKVAGVGLSALFHEKKEKPR 147
>sp|P79057|RS23_SCHPO 40S RIBOSOMAL PROTEIN S23 >gi|7489981|pir||T38240 40s ribosomal
protein s23 - fission yeast (Schizosaccharomyces pombe)
>gi|2330766|emb|CAB11155.1| (Z98559) 40s ribosomal
protein s23 [Schizosaccharomyces pombe]
>gi|7363190|emb|CAB83171.1| (AL162692) 40s ribosomal
protein s23 [Schizosaccharomyces pombe]
Length = 143
Score = 158 bits (396), Expect = 3e-38
Identities = 81/140 (57%), Positives = 100/140 (70%), Gaps = 1/140 (0%)
Query: 7 PNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPN 66
P G A RKL+ R++ RW+D YK+R+L KS P G+ A+GIV+EKI VEAKQPN
Sbjct: 4 PAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPN 63
Query: 67 SGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKV 126
S +RK VRVQLIKNGK VTAF P DG + F+DE+DEV++ G G KG + GDIPG+R+KV
Sbjct: 64 SAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGF-GRKGKAKGDIPGVRFKV 122
Query: 127 VKVNRVSLKELVKGRKEKPR 146
VKV V L L +KEKPR
Sbjct: 123 VKVAGVGLSALFHEKKEKPR 142
>emb|CAC14789.1| (AJ291613) 40S ribosomal protein S23 [Lumbricus rubellus]
Length = 143
Score = 157 bits (393), Expect = 6e-38
Identities = 81/140 (57%), Positives = 101/140 (71%), Gaps = 1/140 (0%)
Query: 7 PNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPN 66
P G RKLK R++ RW D YK+ L + KS+P GA A+GIVLEK+ VEAKQPN
Sbjct: 4 PRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPN 63
Query: 67 SGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKV 126
S +RK VRVQLIKNGK +TAF P DG + FI+E+DEV++ G G KG ++GDIPG+R+KV
Sbjct: 64 SAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGF-GRKGHAVGDIPGVRFKV 122
Query: 127 VKVNRVSLKELVKGRKEKPR 146
VKV VSL L K +KE+PR
Sbjct: 123 VKVASVSLLALYKQKKERPR 142
>sp|P90707|RS23_BRUMA 40S RIBOSOMAL PROTEIN S23 >gi|1754684|gb|AAC47632.1| (U81008)
ribosomal protein S23 [Brugia malayi]
Length = 143
Score = 157 bits (392), Expect = 8e-38
Identities = 79/140 (56%), Positives = 101/140 (71%), Gaps = 1/140 (0%)
Query: 7 PNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPN 66
P G A RKLK R+ RW+D YK+ L + K++P A A+GIVLEK+ VEAKQPN
Sbjct: 4 PKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPN 63
Query: 67 SGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKV 126
S +RK VRVQLIKNGK +TAF P DG + FI+E+DEV++ G G KG ++GDIPG+R+K+
Sbjct: 64 SAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGF-GRKGHAVGDIPGVRFKI 122
Query: 127 VKVNRVSLKELVKGRKEKPR 146
VKV SL L KG+KE+PR
Sbjct: 123 VKVANTSLIALFKGKKERPR 142
>gi|4506701 ribosomal protein S23 [Homo sapiens] >gi|11417289|ref|XP_004020.1|
ribosomal protein S23 [Homo sapiens]
>gi|730647|sp|P39028|RS23_HUMAN 40S RIBOSOMAL PROTEIN
S23 >gi|543449|pir||S41955 ribosomal protein S23,
cytosolic [validated] - rat >gi|631360|pir||S42105
ribosomal protein S23, cytosolic - human
>gi|414349|dbj|BAA03400.1| (D14530) ribosomal protein
[Homo sapiens] >gi|453281|emb|CAA54584.1| (X77398)
ribosomal protein S23 [Rattus norvegicus]
Length = 143
Score = 155 bits (387), Expect = 3e-37
Identities = 77/133 (57%), Positives = 99/133 (73%), Gaps = 1/133 (0%)
Query: 14 RKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAV 73
RKL+ R+ +W D +YK+ L K++P GA A+GIVLEK+ VEAKQPNS +RK V
Sbjct: 11 RKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 70
Query: 74 RVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVS 133
RVQLIKNGK +TAF P DG + FI+E+DEV++ G G KG ++GDIPG+R+KVVKV VS
Sbjct: 71 RVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGF-GRKGHAVGDIPGVRFKVVKVANVS 129
Query: 134 LKELVKGRKEKPR 146
L L KG+KE+PR
Sbjct: 130 LLALYKGKKERPR 142
>gb|AAF58277.1| (AE003815) CG8415 gene product [Drosophila melanogaster]
Length = 216
Score = 150 bits (375), Expect = 7e-36
Identities = 77/140 (55%), Positives = 100/140 (71%), Gaps = 1/140 (0%)
Query: 7 PNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPN 66
P G RK R+ RW+D YK+ L + K++P GA A+GIVLEK+ VEAKQPN
Sbjct: 77 PRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPN 136
Query: 67 SGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKV 126
S +RK VRVQLIKNGK +TAF P DG++ +I+E+DEV++ G G KG ++GDIPG+R+KV
Sbjct: 137 SAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGF-GRKGHAVGDIPGVRFKV 195
Query: 127 VKVNRVSLKELVKGRKEKPR 146
VKV VSL L K +KE+PR
Sbjct: 196 VKVANVSLLALYKEKKERPR 215
>pir||T48317 hypothetical protein F9G14.270 - Arabidopsis thaliana
>gi|7413571|emb|CAB86050.1| (AL162973) putative protein
[Arabidopsis thaliana]
Length = 142
Score = 148 bits (371), Expect = 2e-35
Identities = 79/138 (57%), Positives = 98/138 (70%), Gaps = 2/138 (1%)
Query: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSG 68
G AGRKLK R RW+D +YK+ L E P G+ A+GIVLEKI +EAKQPNS
Sbjct: 6 GMGAGRKLKRLRINQRWADKQYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSA 64
Query: 69 MRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK 128
+RK RVQLIKNGK + AF P DG + +I+E+DEV+I G G KG ++GDIPG+R+KVVK
Sbjct: 65 IRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVK 123
Query: 129 VNRVSLKELVKGRKEKPR 146
V+ VSL L K +KEKPR
Sbjct: 124 VSGVSLLALFKEKKEKPR 141
>sp|P46297|RS23_FRAAN 40S RIBOSOMAL PROTEIN S23 (S12) >gi|1362041|pir||S56673 ribosomal
protein S23.e, cytosolic (clone RJ3) - garden strawberry
>gi|643074|gb|AAA79921.1| (U19940) putative 40S
ribosomal protein s12 [Fragaria x ananassa]
Length = 142
Score = 148 bits (370), Expect = 3e-35
Identities = 78/138 (56%), Positives = 98/138 (70%), Gaps = 2/138 (1%)
Query: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSG 68
G A RKLK R++ RW+D YK+ L E P G+ A+GIVLEKI +EAKQPNS
Sbjct: 6 GMGAARKLKNHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSA 64
Query: 69 MRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK 128
+RK RVQLIKNGK + AF P DG + +I+E+DEV+I G G KG ++GDIPG+R+KVVK
Sbjct: 65 IRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVK 123
Query: 129 VNRVSLKELVKGRKEKPR 146
V+ VSL L K +KEKPR
Sbjct: 124 VSGVSLLALFKEKKEKPR 141
>gb|AAF26742.1|AF220539_1 (AF220539) 40s ribosomal protein S23 [Euphorbia esula]
Length = 142
Score = 148 bits (369), Expect = 4e-35
Identities = 78/139 (56%), Positives = 98/139 (70%), Gaps = 2/139 (1%)
Query: 8 NGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNS 67
+G A RKLK R+ RW+D YK+ L E P G+ A+GIVLEKI +EAKQPNS
Sbjct: 5 HGMGAARKLKSHRRTQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNS 63
Query: 68 GMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVV 127
+RK RVQLIKNGK + AF P DG + +I+E+DEV+I G G KG ++GDIPG+R+KVV
Sbjct: 64 AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVV 122
Query: 128 KVNRVSLKELVKGRKEKPR 146
KV+ VSL L K +KEKPR
Sbjct: 123 KVSGVSLLALFKEKKEKPR 141
>gb|AAF23298.1|AC016661_23 (AC016661) putative 40S ribosomal protein S23 [Arabidopsis
thaliana]
Length = 136
Score = 143 bits (358), Expect = 7e-34
Identities = 77/135 (57%), Positives = 95/135 (70%), Gaps = 2/135 (1%)
Query: 12 AGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRK 71
AGRKLK R RW+D YK+ R E P + A+GIVLEKI +EAKQPNS +RK
Sbjct: 3 AGRKLKQLRITQRWADKHYKKSN-RGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRK 61
Query: 72 AVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNR 131
RVQLIKNGK + AF P DG + +I+E+DEV+I G G KG ++GDIPG+R+KVVKV+
Sbjct: 62 CARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSG 120
Query: 132 VSLKELVKGRKEKPR 146
VSL L K +KEKPR
Sbjct: 121 VSLLALFKEKKEKPR 135
>gb|AAG13288.1|AF266168_1 (AF266168) 40S ribosomal protein S23 [Gillichthys mirabilis]
Length = 143
Score = 143 bits (357), Expect = 1e-33
Identities = 71/133 (53%), Positives = 96/133 (71%), Gaps = 1/133 (0%)
Query: 14 RKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAV 73
RKL+ R++ +W D +YK+ L K++P A A+GIVLEK+ VEAKQPNS +RK V
Sbjct: 11 RKLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSAIRKCV 70
Query: 74 RVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVS 133
RVQLIKNGK +TAF P DG + F +E+DEV++ G G K ++GDIPG+R+KVV++ VS
Sbjct: 71 RVQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGF-GRKXHAVGDIPGVRFKVVEMANVS 129
Query: 134 LKELVKGRKEKPR 146
L L KG KE+P+
Sbjct: 130 LLALYKGXKERPK 142
>emb|CAC04007.1| (AL391394) probable ribosomal protein S23 [Leishmania major]
>gi|9857051|emb|CAC04008.1| (AL391394) probable
ribosomal protein S23 [Leishmania major]
Length = 143
Score = 142 bits (354), Expect = 2e-33
Identities = 73/139 (52%), Positives = 96/139 (68%), Gaps = 1/139 (0%)
Query: 8 NGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNS 67
NG+ A RKL R + RW+D +KR K++P G+ A+GIVLEKI V AKQPNS
Sbjct: 5 NGQNAARKLVRLRCRNRWADKGWKRAHTFSARKANPFGGSSHAKGIVLEKIGVGAKQPNS 64
Query: 68 GMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVV 127
+RK VRVQLIKN K + AF P DG + FI+E+DEV++ G G G ++GDIPG+R+K+V
Sbjct: 65 AIRKCVRVQLIKNDKKIIAFVPNDGCLHFIEENDEVLVSGF-GRSGHAVGDIPGVRFKIV 123
Query: 128 KVNRVSLKELVKGRKEKPR 146
KV+ V L L + +KEKPR
Sbjct: 124 KVSNVGLYALYRQKKEKPR 142
>sp|P06147|RS12_TETTH 40S RIBOSOMAL PROTEIN S12 >gi|84359|pir||A25699 ribosomal protein
TS25 - Tetrahymena thermophila >gi|10839|emb|CAA28021.1|
(X04425) ribosomal protein [Tetrahymena thermophila]
>gi|225326|prf||1212273A ribosomal protein S25
[Tetrahymena thermophila]
Length = 142
Score = 132 bits (330), Expect = 1e-30
Identities = 70/142 (49%), Positives = 96/142 (67%), Gaps = 2/142 (1%)
Query: 3 GKKAPNGEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEA 62
G P G AGRKL RK RW+D + +R+L + ++ P GA A+G+V EKI +E+
Sbjct: 2 GVGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRN-PFMGASHAKGLVTEKIGIES 60
Query: 63 KQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGI 122
KQPNS +RK VRV L KN K + AF P DG + F+ E+DEV++ G+ G +G ++GDIPG+
Sbjct: 61 KQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGL-GRQGHAVGDIPGV 119
Query: 123 RYKVVKVNRVSLKELVKGRKEK 144
R+KVV V +SL L KG+KEK
Sbjct: 120 RFKVVCVKGISLLALFKGKKEK 141
>sp|P49201|RS23_ARATH 40S RIBOSOMAL PROTEIN S23 (S12)
Length = 108
Score = 106 bits (261), Expect = 2e-22
Identities = 54/101 (53%), Positives = 68/101 (66%), Gaps = 1/101 (0%)
Query: 9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSG 68
G AGR +K R RW+D +YK+ L E P G+ A+GIVLEKI +EAKQPNS
Sbjct: 6 GMGAGRNVKRLRINQRWADKQYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSA 64
Query: 69 MRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIG 109
+RK RVQLIKNGK + AF P DG + +I+E+DEV+I G G
Sbjct: 65 IRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 105
>sp|O70089|RS12_AQUAE 30S RIBOSOMAL PROTEIN S12 >gi|7440351|pir||H70457 ribosomal protein
S12 - Aquifex aeolicus >gi|2983320|gb|AAC06910.1|
(AE000705) ribosomal protein S12 [Aquifex aeolicus]
>gi|2984118|gb|AAC07655.1| (AE000758) ribosomal protein
S12 [Aquifex aeolicus]
Length = 128
Score = 76.1 bits (184), Expect = 2e-13
Identities = 39/101 (38%), Positives = 61/101 (59%), Gaps = 9/101 (8%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
++Y R + K K+ L+G PQ RG+ + V K+PNS +RK RV+L NG VTA+
Sbjct: 8 VKYGREKRKKKSKAPALQGCPQKRGVCVRVYTVTPKKPNSALRKVARVRL-SNGIEVTAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK 128
PG+G + EH V++ +GG + D+PG+RYK+++
Sbjct: 67 IPGEG--HNLQEHSIVLV------RGGRVKDLPGVRYKIIR 99
>dbj|BAA25822.1| (AB007158) ribosomal protein S23 [Homo sapiens]
Length = 59
Score = 74.9 bits (181), Expect = 4e-13
Identities = 35/60 (58%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 87 FCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
F P DG + FI+E+DEV++ G G KG ++GDIPG+R+KVVKV VSL L KG+KE+PR
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGR-KGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
>sp|Q9X1J3|RS12_THEMA 30S RIBOSOMAL PROTEIN S12 >gi|7440374|pir||B72244 ribosomal protein
S12 - Thermotoga maritima (strain MSB8)
>gi|4982071|gb|AAD36572.1|AE001799_4 (AE001799)
ribosomal protein S12 [Thermotoga maritima]
Length = 129
Score = 74.9 bits (181), Expect = 4e-13
Identities = 40/101 (39%), Positives = 62/101 (60%), Gaps = 9/101 (8%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
IRY R+ + K K+ L+G PQ RG+ ++ + K+PNS +RK RV+L NG VTA+
Sbjct: 10 IRYGRKPKKKKSKAPALQGNPQKRGVCIKVSTMTPKKPNSALRKIARVRL-SNGIEVTAY 68
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK 128
PG G + EH V++ +GG + D+PG+RYK+++
Sbjct: 69 IPGIG--HNLQEHSVVLV------RGGRVKDLPGVRYKIIR 101
>sp|P06368|RR12_MARPO CHLOROPLAST 30S RIBOSOMAL PROTEIN S12 >gi|70959|pir||R3LV12
ribosomal protein S12, chloroplast - liverwort
(Marchantia polymorpha) chloroplast
>gi|669078|emb|CAA27297.1| (X03661) ribosomal protein
S12 [Marchantia polymorpha] >gi|224923|prf||1204199B
ribosomal protein S12 [Marchantia polymorpha]
Length = 123
Score = 71.0 bits (171), Expect = 6e-12
Identities = 41/118 (34%), Positives = 68/118 (56%), Gaps = 11/118 (9%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
IR KR+ + + KS L+G PQ RG+ K+PNS +RK RV+L +G +TA+
Sbjct: 8 IRNKRQPIENRTKSPALKGCPQRRGVCTRVYTTTPKKPNSALRKIARVRL-TSGFEITAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--VNRVSLKELVKGRKE 143
PG G + EH V++ +GG + D+PG+RY +++ ++ V +K+ +GR +
Sbjct: 67 IPGIG--HNLQEHSVVLV------RGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRSK 116
>gi|11466871 ribosomal protein S12 [Oryza sativa]
>gi|133748|sp|P12149|RR12_ORYSA CHLOROPLAST 30S
RIBOSOMAL PROTEIN S12 >gi|70961|pir||R3RZ12 ribosomal
protein S12 - rice chloroplast
>gi|1213603|emb|CAA33929.1| (X15901) ribosomal protein
S12 [Oryza sativa] >gi|226658|prf||1603356CJ ribosomal
protein S12 [Oryza sativa]
Length = 124
Score = 71.0 bits (171), Expect = 6e-12
Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 15/126 (11%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
IR R+ +R KS L+G PQ RG + K+PNS +RK RV+L +G +TA+
Sbjct: 8 IRNARQPIRNARKSAALKGCPQRRGTCARVYTINPKKPNSALRKVARVRL-TSGFEITAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--VNRVSLKELVKGRK--- 142
PG G + EH V++ +GG + D+PG+RY++++ ++ V++K +GR
Sbjct: 67 IPGIG--HNLQEHSVVLV------RGGRVKDLPGVRYRIIRGALDAVAVKNRQQGRSKYG 118
Query: 143 -EKPRR 147
+KP++
Sbjct: 119 VKKPKK 124
>gi|11467215 ribosomal protein S12 [Zea mays] >gi|1173189|sp|P12340|RR12_MAIZE
CHLOROPLAST 30S RIBOSOMAL PROTEIN S12
>gi|2119091|pir||S58629 ribosomal protein S12 - maize
chloroplast >gi|342619|gb|AAA85359.1| (M17841) ribosomal
protein S12 [Zea mays] >gi|1216141|emb|CAA60309.1|
(X86563) ribosomal protein S12 [Zea mays]
Length = 124
Score = 71.0 bits (171), Expect = 6e-12
Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 15/126 (11%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
IR R+ +R KS L+G PQ RG + K+PNS +RK RV+L +G +TA+
Sbjct: 8 IRNARQPIRNARKSAALKGCPQRRGTCARVYTINPKKPNSALRKVARVRL-TSGFEITAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--VNRVSLKELVKGRK--- 142
PG G + EH V++ +GG + D+PG+RY++++ ++ V++K +GR
Sbjct: 67 IPGIG--HNLQEHSVVLV------RGGRVKDLPGVRYRIIRGTLDAVAVKNRQQGRSKYG 118
Query: 143 -EKPRR 147
+KP++
Sbjct: 119 AKKPKK 124
>sp|P42344|RR12_SPIMX CHLOROPLAST 30S RIBOSOMAL PROTEIN S12 >gi|951437|gb|AAB01590.1|
(L07932) ribosomal protein S12 [Spirogyra maxima]
Length = 123
Score = 71.0 bits (171), Expect = 6e-12
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
IR KR+ K KS L+ +PQ RG+ K+PNS +RK RV+L +G VTA+
Sbjct: 8 IRNKRQAAENKTKSPALQRSPQRRGVCTRVYTTTPKKPNSALRKVARVRL-TSGFEVTAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--VNRVSLKELVKGRKE 143
PG G + EH V++ +GG + D+PG+RY +V+ ++ V +K+ KGR +
Sbjct: 67 IPGIG--HNLQEHSVVLV------RGGRVKDLPGVRYHIVRGTLDVVGVKDRRKGRSK 116
>sp|P48856|RR12_HORVU CHLOROPLAST 30S RIBOSOMAL PROTEIN S12 >gi|2119087|pir||S57947
ribosomal protein S12 - barley >gi|2130057|pir||S65048
ribosomal protein S12 - barley chloroplast
>gi|899306|emb|CAA61739.1| (X89562) small ribosomal
protein 12 [Hordeum vulgare]
Length = 124
Score = 69.9 bits (168), Expect = 1e-11
Identities = 42/126 (33%), Positives = 72/126 (56%), Gaps = 15/126 (11%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
IR R+ +R K+ L+G PQ RG + K+PNS +RK RV+L +G +TA+
Sbjct: 8 IRNARQPIRNARKTAALKGCPQRRGTCARVYTINPKKPNSALRKVARVRL-TSGFEITAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--VNRVSLKELVKGRK--- 142
PG G + EH V++ +GG + D+PG+RY++++ ++ V++K +GR
Sbjct: 67 IPGIG--HNLQEHSVVLV------RGGRVKDLPGVRYRIIRGTLDAVAVKNRQQGRSKYG 118
Query: 143 -EKPRR 147
+KP++
Sbjct: 119 VKKPKK 124
>gi|11465755 30S ribosomal protein S12 [Porphyra purpurea]
>gi|1710692|sp|P51289|RR12_PORPU CHLOROPLAST 30S
RIBOSOMAL PROTEIN S12 >gi|2147025|pir||S73210 ribosomal
protein S12, chloroplast - red alga (Porphyra purpurea)
chloroplast >gi|1276755|gb|AAC08175.1| (U38804) 30S
ribosomal protein S12 [Porphyra purpurea]
Length = 124
Score = 69.9 bits (168), Expect = 1e-11
Identities = 44/118 (37%), Positives = 65/118 (54%), Gaps = 11/118 (9%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
+R +RR + K KS L+ PQ RG+ K+PNS +RK RV+L +G VTA+
Sbjct: 8 VRSERRKINKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRL-TSGFEVTAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--VNRVSLKELVKGRKE 143
PG G I EH V+I +GG + D+PG+RY VV+ ++ +K+ K R +
Sbjct: 67 IPGVG--HNIQEHSVVLI------RGGRIKDLPGVRYHVVRGTLDAAGVKDRRKSRSK 116
>sp|P07134|RR12_SOYBN CHLOROPLAST 30S RIBOSOMAL PROTEIN S12 >gi|320170|pir||A26574
ribosomal protein S12, chloroplast - soybean chloroplast
>gi|11572|emb|CAA28661.1| (X05013) rps12 [Glycine max]
Length = 123
Score = 69.5 bits (167), Expect = 2e-11
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 11/118 (9%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
IR R+ +R KS L G PQ RG + K+PNS +RK RV+L +G +TA+
Sbjct: 8 IRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--VNRVSLKELVKGRKE 143
PG G + EH V++ +GG + D+PG+RY +V+ ++ V +K+ +GR +
Sbjct: 67 IPGIG--HNLQEHSVVLV------RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSQ 116
>sp|P14149|RR12_CHLRE CHLOROPLAST 30S RIBOSOMAL PROTEIN S12 >gi|81277|pir||A34248
ribosomal protein S12 - Chlamydomonas reinhardtii
chloroplast >gi|336682|gb|AAA84155.1| (M29284) ribosomal
protein rps12 [Chlamydomonas reinhardtii]
>gi|3132692|gb|AAC16329.1| (AF061851) S12 [Chlamydomonas
reinhardtii]
Length = 133
Score = 69.5 bits (167), Expect = 2e-11
Identities = 44/118 (37%), Positives = 65/118 (54%), Gaps = 11/118 (9%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
IR R+ + K KS L+ PQ RGI L V K+PNS +RK RV+L G VTA+
Sbjct: 8 IRSARKKITKKTKSPALKSCPQRRGICLRVYTVTPKKPNSALRKVARVRL-TTGFEVTAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--VNRVSLKELVKGRKE 143
PG G + EH V++ +GG + D+PG+RY +V+ ++ +K V+ R +
Sbjct: 67 IPGVG--HNLQEHAVVLV------RGGRVKDLPGVRYHIVRGSLDTAGVKNRVQSRSK 116
>sp|P97222|RS12_STRCO 30S RIBOSOMAL PROTEIN S12 >gi|1685024|gb|AAC44743.1| (U60191)
ribosomal protein S12 [Streptomyces roseosporus]
>gi|1772348|dbj|BAA12096.1| (D83746) ribosomal protein
S12 [Streptomyces lividans] >gi|7288055|emb|CAB81850.1|
(AL161691) 30S ribosomal protein S12 [Streptomyces
coelicolor A3(2)]
Length = 123
Score = 69.5 bits (167), Expect = 2e-11
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 17/115 (14%)
Query: 38 KEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFI 97
K K+ LEG+PQ RG+ K+PNS +RK RV+L +G VTA+ PG+G +
Sbjct: 18 KNKTPALEGSPQRRGVCTRVFTTTPKKPNSALRKVARVRL-TSGIEVTAYIPGEG--HNL 74
Query: 98 DEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--------VNRVSLKELVKGRKEK 144
EH V++ +GG + D+PG+RYK+++ NR + +KEK
Sbjct: 75 QEHSIVLV------RGGRVKDLPGVRYKIIRGSLDTQGVKNRKQARSRYGAKKEK 123
>gi|7525057 ribosomal protein S12 [Arabidopsis thaliana]
>gi|7525080|ref|NP_051037.1| ribosomal protein S12
[Arabidopsis thaliana] >gi|11497571|ref|NP_054910.1|
ribosomal protein S12 [Spinacia oleracea]
>gi|11497594|ref|NP_054911.1| ribosomal protein S12
[Spinacia oleracea] >gi|548847|sp|P06369|RR12_TOBAC
CHLOROPLAST 30S RIBOSOMAL PROTEIN S12
>gi|6685907|sp|P56803|RR12_ARATH CHLOROPLAST 30S
RIBOSOMAL PROTEIN S12 >gi|1086182|pir||S39501 ribosomal
protein S12 - curled-leaved tobacco
>gi|5881718|dbj|BAA84409.1| (AP000423) ribosomal protein
S12 [Arabidopsis thaliana] >gi|5881741|dbj|BAA84432.1|
(AP000423) ribosomal protein S12 [Arabidopsis thaliana]
>gi|7636152|emb|CAB88774.1| (AJ400848) ribosomal protein
S12 [Spinacia oleracea] >gi|7636175|emb|CAB88797.1|
(AJ400848) ribosomal protein S12 [Spinacia oleracea]
>gi|225248|prf||1211235CG ribosomal protein S12
[Nicotiana tabacum]
Length = 123
Score = 69.1 bits (166), Expect = 2e-11
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 11/118 (9%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
IR R+ +R KS L G PQ RG + K+PNS +RK RV+L +G +TA+
Sbjct: 8 IRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--VNRVSLKELVKGRKE 143
PG G + EH V++ +GG + D+PG+RY +V+ ++ V +K+ +GR +
Sbjct: 67 IPGIG--HNLQEHSVVLV------RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSK 116
>gi|11467445 30S ribosomal protein S12 [Odontella sinensis]
>gi|1350869|sp|P49500|RR12_ODOSI CHLOROPLAST 30S
RIBOSOMAL PROTEIN S12 >gi|7440354|pir||S78250 ribosomal
protein S12, chloroplast - Odontella sinensis
chloroplast >gi|1185140|emb|CAA91623.1| (Z67753) 30S
ribosomal protein S12 [Odontella sinensis]
Length = 126
Score = 68.3 bits (164), Expect = 4e-11
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 11/118 (9%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
+R +R ++ K KS L PQ RG+ K+PNS +RK RV+L + K VTA+
Sbjct: 8 VRSRRIQIKKKTKSPALVNCPQRRGVCTRVYTTTPKKPNSAIRKVARVRLTSDLK-VTAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--VNRVSLKELVKGRKE 143
PG G + EH V+I +GG + D+PG+RY +++ ++ V +K+ +GR +
Sbjct: 67 IPGIG--HNLQEHSVVLI------RGGRVKDLPGVRYHIIRGALDSVGVKDRTQGRSK 116
>emb|CAB67182.1| (AJ271079) ribosomal protein S12 [Oenothera elata subsp. hookeri]
>gi|6723774|emb|CAB67183.1| (AJ271079) ribosomal protein
S12 [Oenothera elata subsp. hookeri]
Length = 123
Score = 68.3 bits (164), Expect = 4e-11
Identities = 42/118 (35%), Positives = 65/118 (54%), Gaps = 11/118 (9%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
IR R+ +R KS L G PQ RG + K+PNS +RK RV+L +G +TA+
Sbjct: 8 IRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTINPKKPNSALRKVARVRL-TSGFEITAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--VNRVSLKELVKGRKE 143
PG G EH V++ +GG + D+PG+RY +V+ ++ V +K+ +GR +
Sbjct: 67 IPGIGHNS--QEHSVVLV------RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSK 116
>pir||R3NT12 ribosomal protein S12 - common tobacco chloroplast
Length = 122
Score = 67.9 bits (163), Expect = 5e-11
Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 12/118 (10%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
IR R+ +R KS L G PQ RG ++ + K+PNS +RK RV+L +G +TA+
Sbjct: 8 IRNTRQPIRNVTKSPALRGCPQRRG-TCTRVTITPKKPNSALRKVARVRLT-SGFEITAY 65
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--VNRVSLKELVKGRKE 143
PG G + EH V++ +GG + D+PG+RY +V+ ++ V +K+ +GR +
Sbjct: 66 IPGIG--HNLQEHSVVLV------RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSK 115
>gi|11497482 ribosomal protein S12 [Prototheca wickerhamii]
>gi|1173314|sp|P46744|RT12_PROWI MITOCHONDRIAL RIBOSOMAL
PROTEIN S12 >gi|7440377|pir||T11941 ribosomal protein
S12 - Prototheca wickerhamii mitochondrion
>gi|467873|gb|AAD12660.1| (U02970) ribosomal protein S12
[Prototheca wickerhamii]
Length = 125
Score = 67.9 bits (163), Expect = 5e-11
Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 32 RRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGD 91
R+ +LK K L G PQ RG+ K+PNS +RK +++L NG VV A PG+
Sbjct: 14 RQAPKLKSKKPALAGCPQKRGVCFRVYTRTPKKPNSALRKVAKIRLC-NGIVVIASIPGE 72
Query: 92 GAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEK 144
G + EH V I +GG + D+PG++YKVV+ R+ L+ +V ++ +
Sbjct: 73 G--HNLQEHSVVCI------RGGRVKDLPGVKYKVVR-GRLDLQGVVNRKQSR 116
>gi|11466995 30S ribosomal protein S12 [Euglena gracilis]
>gi|133738|sp|P02368|RR12_EUGGR CHLOROPLAST 30S
RIBOSOMAL PROTEIN S12 >gi|70955|pir||R3EG12 ribosomal
protein S12, chloroplast - Euglena gracilis chloroplast
>gi|11534|emb|CAA29597.1| (X06254) ribosomal protein S12
[Euglena gracilis] >gi|12564|emb|CAA25157.1| (X00480)
ribosomal protein S12 [Euglena gracilis]
>gi|14356|emb|CAA77906.1| (Z11874) ribosomal protein S12
[Euglena gracilis] >gi|415745|emb|CAA50089.1| (X70810)
30S ribosomal protein S12 [Euglena gracilis]
Length = 125
Score = 67.5 bits (162), Expect = 7e-11
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 17/126 (13%)
Query: 29 RYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFC 88
R R+ ++ K KS L+G PQ R I + K+PNS +RK RV+L +G VTA+
Sbjct: 9 RSPRKKIKRKTKSPALKGCPQKRAICMRVYTTTPKKPNSALRKVTRVRL-SSGLEVTAYI 67
Query: 89 PGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--------VNRVSLKELVKG 140
PG G + EH V+I +GG + D+PG++Y V++ NR + +
Sbjct: 68 PGIG--HNLQEHSVVLI------RGGRVKDLPGVKYHVIRGCLDAASVKNRKNARSKYGV 119
Query: 141 RKEKPR 146
+K KP+
Sbjct: 120 KKPKPK 125
>gi|11467352 ribosomal protein S12 [Cyanophora paradoxa]
>gi|133736|sp|P17294|RR12_CYAPA CYANELLE 30S RIBOSOMAL
PROTEIN S12 >gi|70958|pir||R3KT12 ribosomal protein S12,
cyanelle - Cyanophora paradoxa cyanelle
>gi|11414|emb|CAA36738.1| (X52497) ribosomal protein S12
(AA 1-124) [Cyanophora paradoxa]
>gi|1016153|gb|AAA81240.1| (U30821) ribosomal protein
S12 [Cyanophora paradoxa]
Length = 124
Score = 67.1 bits (161), Expect = 9e-11
Identities = 39/101 (38%), Positives = 56/101 (54%), Gaps = 9/101 (8%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
IR KR + K KS L+ PQ RG+ K+PNS +RK RV+L +G VTA+
Sbjct: 8 IRSKRTKIEKKTKSPALKACPQRRGVCTRVYTTTPKKPNSALRKVARVRL-TSGFEVTAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK 128
PG G + EH V++ +GG + D+PG+RY +V+
Sbjct: 67 IPGIG--HNLQEHSVVLV------RGGRVKDLPGVRYHIVR 99
>sp|P33565|RS12_MYCIT 30S RIBOSOMAL PROTEIN S12 >gi|479856|pir||S35537 ribosomal protein
S12 - Mycobacterium intracellulare
>gi|149995|gb|AAA25375.1| (L08171) ribosomal protein S12
[Mycobacterium intracellulare]
Length = 124
Score = 67.1 bits (161), Expect = 9e-11
Identities = 42/125 (33%), Positives = 65/125 (51%), Gaps = 17/125 (13%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
+R RR K K+ L+G+PQ RG+ K+PNS +RK RV+L + VTA+
Sbjct: 8 VRKGRRDKVAKVKTAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSQVE-VTAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--------VNRVSLKELVK 139
PG+G + EH V++ +GG + D+PG+RYK+++ NR +
Sbjct: 67 IPGEG--HNLQEHSMVLV------RGGRVKDLPGVRYKIIRGSLDTQGVKNRKQARSRYG 118
Query: 140 GRKEK 144
+KEK
Sbjct: 119 AKKEK 123
>sp|P41195|RS12_MYCSM 30S RIBOSOMAL PROTEIN S12 >gi|511651|gb|AAA62390.1| (L34681)
ribosomal protein S12 [Mycobacterium smegmatis]
Length = 124
Score = 67.1 bits (161), Expect = 9e-11
Identities = 42/125 (33%), Positives = 65/125 (51%), Gaps = 17/125 (13%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
+R RR K K+ L+G+PQ RG+ K+PNS +RK RV+L + VTA+
Sbjct: 8 VRKGRRDKIAKVKTAALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSQVE-VTAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--------VNRVSLKELVK 139
PG+G + EH V++ +GG + D+PG+RYK+++ NR +
Sbjct: 67 IPGEG--HNLQEHSMVLV------RGGRVKDLPGVRYKIIRGSLDTQGVKNRKQARSRYG 118
Query: 140 GRKEK 144
+KEK
Sbjct: 119 AKKEK 123
>sp|P46296|RR12_CUSEU CHLOROPLAST 30S RIBOSOMAL PROTEIN S12 >gi|1364146|pir||S55730
ribosomal protein S12 - Cuscuta europaea chloroplast
>gi|1052568|emb|CAA57776.1| (X82332) ribosomal protein
CS12 [Cuscuta europaea]
Length = 123
Score = 67.1 bits (161), Expect = 9e-11
Identities = 41/118 (34%), Positives = 65/118 (54%), Gaps = 11/118 (9%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
IR R+ +R KS L PQ RG + K+PNS +RK RV+L +G +TA+
Sbjct: 8 IRNTRQPIRKVTKSPALRSCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--VNRVSLKELVKGRKE 143
PG G + EH V++ +GG + D+PG+RY +V+ ++ V +K+ +GR +
Sbjct: 67 IPGIG--HNLQEHSVVLV------RGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSK 116
>pir||S72301 ribosomal protein S12 - Plasmodium falciparum plastid
>gi|1171607|emb|CAA64591.1| (X95276) rps12 [Plasmodium
falciparum]
Length = 122
Score = 67.1 bits (161), Expect = 9e-11
Identities = 38/100 (38%), Positives = 63/100 (63%), Gaps = 10/100 (10%)
Query: 30 YKRRVLRLKEKSDPL-EGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFC 88
YK++ + K+ ++ L PQ +GIVL+ + K+PNS +RK +++L N K + A+
Sbjct: 9 YKKKYKKTKKITNYLLNKCPQKKGIVLKILIKTPKKPNSALRKVAKIRL-SNNKELLAYI 67
Query: 89 PGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK 128
PG+G K I EH+ V+I KGG + D+PGI+YK+++
Sbjct: 68 PGEG--KSIQEHNFVLI------KGGRVKDLPGIKYKIIR 99
>sp|P74230|RS12_SYNY3 30S RIBOSOMAL PROTEIN S12 >gi|7440353|pir||S75865 ribosomal protein
S12 - Synechocystis sp. (strain PCC 6803)
>gi|1653410|dbj|BAA18324.1| (D90913) 30S ribosomal
protein S12 [Synechocystis sp.]
Length = 126
Score = 67.1 bits (161), Expect = 9e-11
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 11/118 (9%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
IR +R ++ K KS L+ PQ RG+ K+PNS +RK RV+L +G VTA+
Sbjct: 8 IRSERSKVQKKTKSPALKQCPQRRGVCTRVYTTTPKKPNSALRKVARVRL-TSGFEVTAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK--VNRVSLKELVKGRKE 143
PG G + EH V+I +GG + D+PG+RY +V+ ++ +K+ +GR +
Sbjct: 67 IPGIG--HNLQEHSVVLI------RGGRVKDLPGVRYHIVRGTLDATGVKDRKQGRSK 116
>sp|O51348|RS12_BORBU 30S RIBOSOMAL PROTEIN S12 >gi|7440359|pir||B70148 ribosomal protein
S12 - Lyme disease spirochete >gi|2688295|gb|AAB91503.1|
(AE001144) ribosomal protein S12 (rpsL) [Borrelia
burgdorferi]
Length = 124
Score = 67.1 bits (161), Expect = 9e-11
Identities = 41/101 (40%), Positives = 56/101 (54%), Gaps = 9/101 (8%)
Query: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAF 87
IR R+ K S L+ PQ RGI + V K+PNS +RK RV+L NG VTA+
Sbjct: 8 IRKPRKSQTEKTASPALQNCPQRRGICTRVMTVTPKKPNSALRKVARVRL-SNGFEVTAY 66
Query: 88 CPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVK 128
PG G + EH V+I +GG + D+PG+RY +V+
Sbjct: 67 IPGIG--HNLQEHSVVLI------RGGRVKDLPGVRYHIVR 99
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.140 0.403
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57075441
Number of Sequences: 2977
Number of extensions: 2298233
Number of successful extensions: 7233
Number of sequences better than 1.0e-10: 60
Number of HSP's better than 0.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 7145
Number of HSP's gapped (non-prelim): 60
length of query: 147
length of database: 189,106,746
effective HSP length: 53
effective length of query: 94
effective length of database: 157,386,935
effective search space: 14794371890
effective search space used: 14794371890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 161 (67.1 bits)