BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0428 (rps7P) DE:SSU ribosomal protein S7P (rps7P)
(215 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75182 ssu ribosomal protein s7p (rps7p) PAB0428 - Pyrococc... 434 e-121
sp|O59230|RS7_PYRHO 30S RIBOSOMAL PROTEIN S7P >gi|7440211|pir||C... 427 e-119
sp|P29159|RS7_THECE 30S RIBOSOMAL PROTEIN S7P >gi|99244|pir||S18... 342 1e-93
emb|CAA47728.1| (X67313) ribosomal protein S7 [Thermococcus celer] 340 7e-93
pir||S54733 ribosomal protein S7 - Desulfurococcus mobilis 220 7e-57
sp|P54063|RS7_METJA 30S RIBOSOMAL PROTEIN S7P >gi|2119069|pir||F... 208 5e-53
sp|P35026|RS7_SULSO 30S RIBOSOMAL PROTEIN S7P >gi|7440233|pir||T... 206 1e-52
gb|AAK40560.1| SSU ribosomal protein S7AB (rpS7AB) [Sulfolobus s... 206 1e-52
sp|P41206|RS7_DESMO 30S RIBOSOMAL PROTEIN S7P >gi|410439|emb|CAA... 202 2e-51
sp|P17198|RS7_SULAC 30S RIBOSOMAL PROTEIN S7P >gi|70892|pir||R3U... 201 7e-51
gi|11499477 SSU ribosomal protein S7P (rps7P) [Archaeoglobus ful... 196 2e-49
sp|P14037|RS7_METVA 30S RIBOSOMAL PROTEIN S7P 180 9e-45
sp|O27130|RS7_METTH 30S RIBOSOMAL PROTEIN S7P >gi|7440212|pir||D... 180 9e-45
emb|CAC11240.1| (AL445063) probable 30S RIBOSOMAL PROTEIN S7 [Th... 170 1e-41
sp|P32552|RS7_HALMA 30S RIBOSOMAL PROTEIN S7P (HMAS7) >gi|421713... 159 3e-38
gi|6322583 Ribosomal protein S5 (S2) (rp14) (YS8); Rps5p [Saccha... 155 4e-37
sp|P15763|RS7_HALHA 30S RIBOSOMAL PROTEIN S7P (HMAS7) >gi|81069|... 154 8e-37
gi|6677807 ribosomal protein S5; S5 ribosomal protein [Mus muscu... 152 3e-36
emb|CAA73041.1| (Y12431) 5S ribosomal protein [Mus musculus] 152 3e-36
sp|Q24186|RS5_DROME 40S RIBOSOMAL PROTEIN S5 >gi|1203905|gb|AAB6... 151 7e-36
gi|4506729 ribosomal protein S5 [Homo sapiens] >gi|1173267|sp|P4... 149 2e-35
sp|P15356|RS7_HALMO 30S RIBOSOMAL PROTEIN S7P >gi|81084|pir||S03... 148 4e-35
sp|P24050|RS5_RAT 40S RIBOSOMAL PROTEIN S5 >gi|70891|pir||R3RT5 ... 147 8e-35
gb|AAF55116.1| (AE003706) CG7014 gene product [Drosophila melano... 147 1e-34
sp|O65731|RS5_CICAR 40S RIBOSOMAL PROTEIN S5 >gi|3043428|emb|CAA... 146 2e-34
gb|AAC98068.1| (AC005896) 40S ribosomal protein S5 [Arabidopsis ... 145 3e-34
sp|O93631|RS7_METBU 30S RIBOSOMAL PROTEIN S7P >gi|11276548|pir||... 144 7e-34
gb|AAF23210.1|AC016795_23 (AC016795) putative 40S ribosomal prot... 141 5e-33
sp|O14277|RS5_SCHPO 40S RIBOSOMAL PROTEIN S5 >gi|7489960|pir||T3... 141 8e-33
emb|CAB96005.1| (AL360054) 40s ribosomal protein s5 [Schizosacch... 141 8e-33
sp|P49041|RS5_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S5 >gi|750718... 137 9e-32
sp|Q08364|RS5_PODCA 40S RIBOSOMAL PROTEIN S5 >gi|479613|pir||S34... 136 2e-31
sp|Q9YAU8|RS7_AERPE 30S RIBOSOMAL PROTEIN S7P >gi|7521390|pir||E... 132 2e-30
pir||R3MX7 ribosomal protein S7 - Methanococcus vannielii >gi|44... 131 9e-30
sp|O24111|RS5_NICPL 40S RIBOSOMAL PROTEIN S5 >gi|7440226|pir||T1... 119 2e-26
pir||S33718 ribosomal protein S7 - Sulfolobus solfataricus (frag... 112 4e-24
sp|O15587|RS5_ENTHI 40S RIBOSOMAL PROTEIN S5 >gi|2350900|dbj|BAA... 107 1e-22
sp|P17291|RS7_THETH 30S RIBOSOMAL PROTEIN S7 >gi|70894|pir||R3TW... 74 2e-12
pdb|1RSS| Ribosomal Protein S7 From Thermus Thermophilus 74 2e-12
pdb|1FKA|G Chain G, Structure Of Functionally Activated Small Ri... 74 2e-12
sp|P22744|RS7_BACST 30S RIBOSOMAL PROTEIN S7 (BS7) 71 1e-11
pdb|1DV4|G Chain G, Partial Structure Of 16s Rna Of The Small Ri... 71 1e-11
pdb|1EG0|D Chain D, Fitting Of Components With Known Structure I... 71 1e-11
gi|11426958 ribosomal protein S5 [Homo sapiens] 71 1e-11
pir||JG0008 ribosomal protein S7 - Bacillus stearothermophilus 70 2e-11
gb|AAC98504.1| (AF091995) ribosomal protein [Plasmodium falciparum] 69 4e-11
sp|O50564|RS7_THICU 30S RIBOSOMAL PROTEIN S7 >gi|2654447|gb|AAB8... 68 7e-11
sp|P38526|RS7_THEMA 30S RIBOSOMAL PROTEIN S7 >gi|7440231|pir||A7... 68 9e-11
>pir||G75182 ssu ribosomal protein s7p (rps7p) PAB0428 - Pyrococcus abyssi
(strain Orsay) >gi|5458052|emb|CAB49542.1| (AJ248284)
SSU ribosomal protein S7P (rps7P) [Pyrococcus abyssi]
Length = 215
Score = 434 bits (1104), Expect = e-121
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MAKPLSERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKAN 60
MAKPLSERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKAN
Sbjct: 1 MAKPLSERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKAN 60
Query: 61 VHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPI 120
VHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPI
Sbjct: 61 VHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPI 120
Query: 121 QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSF 180
QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSF
Sbjct: 121 QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSF 180
Query: 181 AEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
AEALAEEIILAANKDPKSYAYSKKLEIERIAESSR
Sbjct: 181 AEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
>sp|O59230|RS7_PYRHO 30S RIBOSOMAL PROTEIN S7P >gi|7440211|pir||C71031 probable
ribosomal protein S7 - Pyrococcus horikoshii
>gi|3257968|dbj|BAA30651.1| (AP000006) 218aa long
hypothetical 30S ribosomal protein S7 [Pyrococcus
horikoshii]
Length = 218
Score = 427 bits (1086), Expect = e-119
Identities = 209/215 (97%), Positives = 214/215 (99%)
Query: 1 MAKPLSERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKAN 60
+AKPL ERFFIPHEIKVMGRWSTEDVEV+DPSLKPYINLEPRLLPHTHGRHAKKHFGKAN
Sbjct: 4 VAKPLQERFFIPHEIKVMGRWSTEDVEVKDPSLKPYINLEPRLLPHTHGRHAKKHFGKAN 63
Query: 61 VHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPI 120
VHIVERLINK+MRSGGSHYKVAGHFMRREHRSLNSKKV+AYEVVKEAFKIIEKRTGKNPI
Sbjct: 64 VHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPI 123
Query: 121 QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSF 180
QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISP+RRLDVALRNIALGASAKCYRTKMSF
Sbjct: 124 QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSF 183
Query: 181 AEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
AEALAEEIILAANKDPKSYAYSKKLEIERIAESSR
Sbjct: 184 AEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218
>sp|P29159|RS7_THECE 30S RIBOSOMAL PROTEIN S7P >gi|99244|pir||S18714 ribosomal protein
S7 - Thermococcus celer >gi|58413|emb|CAA42850.1|
(X60305) ribosomal protein S7 [Thermococcus celer]
Length = 215
Score = 342 bits (869), Expect = 1e-93
Identities = 166/215 (77%), Positives = 192/215 (89%)
Query: 1 MAKPLSERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKAN 60
MAK L+ERF+ P E+KVMGRWS EDV V DPSL+PYINLE RLLPH+HGRHAKK FGKAN
Sbjct: 1 MAKTLTERFYQPKELKVMGRWSVEDVTVNDPSLRPYINLEARLLPHSHGRHAKKAFGKAN 60
Query: 61 VHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPI 120
VHIVERLINK+MRSG + +K GHFMRR+ RSL SKK+KAYEVVKEAF IIE+RT +NPI
Sbjct: 61 VHIVERLINKVMRSGATSHKAGGHFMRRDDRSLMSKKMKAYEVVKEAFMIIERRTKQNPI 120
Query: 121 QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSF 180
QVLV AIEN+APREDTT++ FGGIRYH+AVD+SP+RRLD+AL+NIALGASAKCYR K S+
Sbjct: 121 QVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSY 180
Query: 181 AEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
A+ALAEEII AAN DPK++AYS+K EIERIA+SSR
Sbjct: 181 AQALAEEIIAAANADPKTFAYSRKEEIERIAQSSR 215
>emb|CAA47728.1| (X67313) ribosomal protein S7 [Thermococcus celer]
Length = 215
Score = 340 bits (863), Expect = 7e-93
Identities = 165/213 (77%), Positives = 190/213 (88%)
Query: 1 MAKPLSERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKAN 60
MAK L+ERF+ P E+KVMGRWS EDV V DPSL+PYINLE RLLPH+HGRHAKK FGKAN
Sbjct: 1 MAKTLTERFYQPKELKVMGRWSVEDVTVNDPSLRPYINLEARLLPHSHGRHAKKAFGKAN 60
Query: 61 VHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPI 120
VHIVERLINK+MRSG + +K GHFMRR+ RSL SKK+KAYEVVKEAF IIE+RT +NPI
Sbjct: 61 VHIVERLINKVMRSGATSHKAGGHFMRRDDRSLMSKKMKAYEVVKEAFMIIERRTKQNPI 120
Query: 121 QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSF 180
QVLV AIEN+APREDTT++ FGGIRYH+AVD+SP+RRLD+AL+NIALGASAKCYR K S+
Sbjct: 121 QVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSY 180
Query: 181 AEALAEEIILAANKDPKSYAYSKKLEIERIAES 213
A+ALAEEII AAN DPKS+AYS+K EIERIA+S
Sbjct: 181 AQALAEEIIAAANADPKSFAYSRKEEIERIAQS 213
>pir||S54733 ribosomal protein S7 - Desulfurococcus mobilis
Length = 198
Score = 220 bits (556), Expect = 7e-57
Identities = 116/208 (55%), Positives = 146/208 (69%), Gaps = 16/208 (7%)
Query: 8 RFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERL 67
R + EIK+ +WS + +EVRDPSLK YI L+P LPHT GRH + FGK +V IVERL
Sbjct: 7 RELVIKEIKLFNKWSYDFIEVRDPSLKKYICLKPVYLPHTGGRHEHRRFGKTHVPIVERL 66
Query: 68 INKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAI 127
INK+MR G + KK AY +VK+AF II +TG+NPIQVLV AI
Sbjct: 67 INKVMRPGRNM----------------GKKHLAYHIVKKAFDIIHIKTGENPIQVLVRAI 110
Query: 128 ENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEE 187
ENAAPRE+TT +M+GGI YHV+VD++P+RR+D+ALR++ GA K + + + EALAEE
Sbjct: 111 ENAAPREETTRIMYGGITYHVSVDVAPLRRIDLALRHLTEGARMKAFHSPIPIEEALAEE 170
Query: 188 IILAANKDPKSYAYSKKLEIERIAESSR 215
I+LAA+ DPKSYA KK EIERIA SSR
Sbjct: 171 IVLAASNDPKSYAIQKKEEIERIALSSR 198
>sp|P54063|RS7_METJA 30S RIBOSOMAL PROTEIN S7P >gi|2119069|pir||F64430 ribosomal protein
S7 - Methanococcus jannaschii >gi|1591701|gb|AAB99051.1|
(U67547) SSU ribosomal protein S7P (rpsG) [Methanococcus
jannaschii]
Length = 191
Score = 208 bits (523), Expect = 5e-53
Identities = 115/203 (56%), Positives = 143/203 (69%), Gaps = 17/203 (8%)
Query: 14 EIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMR 73
EIKV GRWST+DV V+DP L+ YINL P +PHT GR+ K+ F KA ++IVERL+NK+MR
Sbjct: 5 EIKVFGRWSTKDVVVKDPGLRNYINLTPIYVPHTAGRYTKRQFEKAKMNIVERLVNKVMR 64
Query: 74 SGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPR 133
RE + KK+KA ++V+ AF+IIEKRT +NPIQVLV AIENA PR
Sbjct: 65 --------------REENT--GKKLKALKIVENAFEIIEKRTKQNPIQVLVDAIENAGPR 108
Query: 134 EDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAAN 193
EDTT + +GGI Y +VD S +RR+DVALRNIALGA +++K EALAEEII AA
Sbjct: 109 EDTTRISYGGIVYLQSVDCSSLRRIDVALRNIALGAYMAAHKSKKPIEEALAEEIIAAAR 168
Query: 194 KD-PKSYAYSKKLEIERIAESSR 215
D KSYA KK E ER+A+S+R
Sbjct: 169 GDMQKSYAVRKKEETERVAQSAR 191
>sp|P35026|RS7_SULSO 30S RIBOSOMAL PROTEIN S7P >gi|7440233|pir||T11746 ribosomal protein
S7 - Sulfolobus solfataricus >gi|510208|emb|CAA54161.1|
(X76767) ribosomal protein S7 [Sulfolobus solfataricus]
Length = 193
Score = 206 bits (520), Expect = 1e-52
Identities = 113/202 (55%), Positives = 137/202 (66%), Gaps = 17/202 (8%)
Query: 14 EIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMR 73
+IKV +W T+ VE+RDPSLK YI+L P LPHT GRH + FGKA V IVERLIN+IMR
Sbjct: 9 DIKVFSKWDTK-VEIRDPSLKKYISLMPVYLPHTGGRHEHRRFGKAKVPIVERLINQIMR 67
Query: 74 SGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPR 133
G + KK AY +VK AF II +TG+NPIQVLV AIEN+APR
Sbjct: 68 PGRN----------------KGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPR 111
Query: 134 EDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAAN 193
E+ T +M+GGI Y+VAVD++P RR+D+ALR+IA GA + E LAEEII AAN
Sbjct: 112 EEVTRIMYGGIVYYVAVDVAPQRRIDLALRHIATGAKDSSFNNPKPIEEVLAEEIIAAAN 171
Query: 194 KDPKSYAYSKKLEIERIAESSR 215
DPKS+A +K EIERIA SSR
Sbjct: 172 NDPKSFAIKRKEEIERIALSSR 193
>gb|AAK40560.1| SSU ribosomal protein S7AB (rpS7AB) [Sulfolobus solfataricus]
Length = 193
Score = 206 bits (520), Expect = 1e-52
Identities = 114/202 (56%), Positives = 137/202 (67%), Gaps = 17/202 (8%)
Query: 14 EIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMR 73
+IKV G+W T+ VE+RDPSLK YI+L P LPHT GRH + FGKA V IVERLIN+IMR
Sbjct: 9 DIKVFGKWDTK-VEIRDPSLKKYISLMPVYLPHTGGRHEHRRFGKAKVPIVERLINQIMR 67
Query: 74 SGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPR 133
G + KK AY +VK AF II +TG+NPIQVLV AIEN+APR
Sbjct: 68 PGRN----------------KGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPR 111
Query: 134 EDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAAN 193
E+ T +M+GGI Y+VAVD+SP RR+D+ALR+IA GA + E LAEEII AAN
Sbjct: 112 EEVTRIMYGGIVYYVAVDVSPQRRIDLALRHIATGAKDASFNNPKPIEEVLAEEIIAAAN 171
Query: 194 KDPKSYAYSKKLEIERIAESSR 215
D KS+A +K EIERIA SSR
Sbjct: 172 NDSKSFAIKRKEEIERIALSSR 193
>sp|P41206|RS7_DESMO 30S RIBOSOMAL PROTEIN S7P >gi|410439|emb|CAA51983.1| (X73582)
ribosomal protein S7 [Desulfurococcus mobilis]
Length = 170
Score = 202 bits (509), Expect = 2e-51
Identities = 107/186 (57%), Positives = 132/186 (70%), Gaps = 16/186 (8%)
Query: 30 DPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRRE 89
DPSLK YI L+P LPHT GRH + FGK +V IVERLINK+MR G +
Sbjct: 1 DPSLKKYICLKPVYLPHTGGRHEHRRFGKTHVPIVERLINKVMRPGRNM----------- 49
Query: 90 HRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVA 149
KK AY +VK+AF II +TG+NPIQVLV AIENAAPRE+TT +M+GGI YHV+
Sbjct: 50 -----GKKHLAYHIVKKAFDIIHIKTGENPIQVLVRAIENAAPREETTRIMYGGITYHVS 104
Query: 150 VDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIER 209
VD++P+RR+D+ALR++ GA K + + + EALAEEI+LAA+ DPKSYA KK EIER
Sbjct: 105 VDVAPLRRIDLALRHLTEGARMKAFHSPIPIEEALAEEIVLAASNDPKSYAIQKKEEIER 164
Query: 210 IAESSR 215
IA SSR
Sbjct: 165 IALSSR 170
>sp|P17198|RS7_SULAC 30S RIBOSOMAL PROTEIN S7P >gi|70892|pir||R3UC7 ribosomal protein S7
- Sulfolobus acidocaldarius >gi|46563|emb|CAA36607.1|
(X52382) ribosomal protein S7 (AA 1-195) [Sulfolobus
acidocaldarius] >gi|229086|prf||1817447A ribosomal
protein S7 [Sulfolobus acidocaldarius]
Length = 195
Score = 201 bits (505), Expect = 7e-51
Identities = 110/201 (54%), Positives = 134/201 (65%), Gaps = 17/201 (8%)
Query: 15 IKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRS 74
+KV G+W T+ VEVRDPSLK YI+L LPHT GRH + FGK+ + IVERLIN +MR
Sbjct: 12 VKVFGKWDTK-VEVRDPSLKKYIDLMSIYLPHTGGRHEHRRFGKSRIPIVERLINNLMRP 70
Query: 75 GGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPRE 134
G + KK+ AY +VK F II +TG+NPIQVLV AIENAAPRE
Sbjct: 71 GRN----------------KGKKMLAYNIVKTTFDIIAVKTGQNPIQVLVRAIENAAPRE 114
Query: 135 DTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANK 194
+ T +M+GGI Y+VAVD++P RR+D+ALR++ GAS + EALAEEII AAN
Sbjct: 115 EVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVTGASEASFNNPKPIEEALAEEIIAAANN 174
Query: 195 DPKSYAYSKKLEIERIAESSR 215
D KS A KK EIERIA SSR
Sbjct: 175 DNKSVAIRKKEEIERIALSSR 195
>gi|11499477 SSU ribosomal protein S7P (rps7P) [Archaeoglobus fulgidus]
>gi|3914920|sp|O28386|RS7_ARCFU 30S RIBOSOMAL PROTEIN
S7P >gi|7440213|pir||D69486 probable ribosomal protein
S7 - Archaeoglobus fulgidus >gi|2648652|gb|AAB89361.1|
(AE000972) SSU ribosomal protein S7P (rps7P)
[Archaeoglobus fulgidus]
Length = 194
Score = 196 bits (492), Expect = 2e-49
Identities = 102/206 (49%), Positives = 136/206 (65%), Gaps = 16/206 (7%)
Query: 10 FIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLIN 69
F E+ V G++ +V++ DP+L+ YI LEP+ +PH HGRHA F K V IVERLIN
Sbjct: 5 FTKEELLVFGKYDPSEVQISDPALESYICLEPKYVPHNHGRHANVPFAKQKVFIVERLIN 64
Query: 70 KIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIEN 129
K+MR G + KK+ AY +VKEAF+IIEK+T KNPIQVLV AI N
Sbjct: 65 KVMRKGHN----------------TGKKILAYNIVKEAFEIIEKKTKKNPIQVLVDAIIN 108
Query: 130 AAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEII 189
A PRE+ + +GGI AVD S RR+D+ALRNIA GA +++K S A+ LA+EII
Sbjct: 109 AGPREEVVRLKYGGIAVPKAVDTSSSRRVDIALRNIAEGARRAAFKSKRSIAQCLADEII 168
Query: 190 LAANKDPKSYAYSKKLEIERIAESSR 215
AAN + +S+A +KK E+ER+A+S+R
Sbjct: 169 AAANNESRSFAVAKKEEVERVAKSAR 194
>sp|P14037|RS7_METVA 30S RIBOSOMAL PROTEIN S7P
Length = 194
Score = 180 bits (453), Expect = 9e-45
Identities = 93/203 (45%), Positives = 135/203 (65%), Gaps = 17/203 (8%)
Query: 14 EIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMR 73
EIK+ G+W + V V+DPSLK +I+L P L+PHT GR++KK F K +H+VERL NK+M
Sbjct: 8 EIKLFGKWDSTSVTVKDPSLKSHISLNPVLIPHTAGRNSKKMFDKNKMHVVERLANKLMA 67
Query: 74 SGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPR 133
+ + KK + +++EA I+E RT +NPIQV+V A+EN+ PR
Sbjct: 68 TQVN----------------TGKKNEVLSIIEEALTIVENRTKENPIQVVVDALENSGPR 111
Query: 134 EDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAAN 193
E+TT + +GGI + +VD+SP RRLD A RNI+LGAS +++K S A+ LA+E++ A+
Sbjct: 112 EETTRISYGGIAFLQSVDVSPSRRLDTAFRNISLGASQGAHKSKKSIAQCLADELVAASK 171
Query: 194 KD-PKSYAYSKKLEIERIAESSR 215
D KS+A KK E ER+A+S+R
Sbjct: 172 ADMQKSFAVKKKEEKERVAQSAR 194
>sp|O27130|RS7_METTH 30S RIBOSOMAL PROTEIN S7P >gi|7440212|pir||D69007 ribosomal protein
S7 - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2622155|gb|AAB85547.1| (AE000876) ribosomal
protein S5 (E.coli S7) [Methanobacterium
thermoautotrophicum]
Length = 186
Score = 180 bits (453), Expect = 9e-45
Identities = 95/198 (47%), Positives = 129/198 (64%), Gaps = 16/198 (8%)
Query: 17 VMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSGG 76
V +W ++V+V D L YI L+ L+PHT GRH K+ F K+ V IVERLINK+MR+
Sbjct: 4 VFDKWELDEVKVEDMGLAKYICLDSILVPHTMGRHVKRQFAKSKVSIVERLINKVMRTER 63
Query: 77 SHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDT 136
+ + KK KAY++V+EAF+II +RT +NP+Q+LV A+EN +PRE+T
Sbjct: 64 N----------------SGKKNKAYKIVQEAFEIINRRTKENPVQILVKAVENTSPREET 107
Query: 137 TSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDP 196
T + +GGI Y VAVDISP RR+D++L I GA ++ K S E LA EI+LAA D
Sbjct: 108 TRIKYGGIGYQVAVDISPQRRVDLSLGFITRGAMQAAFKNKKSIEECLANEIMLAAEYDT 167
Query: 197 KSYAYSKKLEIERIAESS 214
+S+A KK E ERIA S+
Sbjct: 168 RSFAIQKKEEKERIARSA 185
>emb|CAC11240.1| (AL445063) probable 30S RIBOSOMAL PROTEIN S7 [Thermoplasma
acidophilum]
Length = 184
Score = 170 bits (427), Expect = 1e-41
Identities = 88/199 (44%), Positives = 127/199 (63%), Gaps = 16/199 (8%)
Query: 17 VMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSGG 76
+ ++ VE+ DP + YIN++ L HT GR + + GK N+++VERLINK+MRS
Sbjct: 2 LFNKYDVNAVEIHDPGMVKYINVKSALNLHTGGRFSSYYAGKINMNVVERLINKLMRS-- 59
Query: 77 SHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDT 136
KK AY++ +EAF+II ++T +NP+Q+L+ AIENA PRE+
Sbjct: 60 --------------EKWTGKKYSAYKITEEAFQIIAEKTKQNPLQILINAIENAGPREEV 105
Query: 137 TSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDP 196
T + +GGI +VD+SP RR+D ALRNIA GA+ +++K S LA+EI+ AA DP
Sbjct: 106 TRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMAAARNDP 165
Query: 197 KSYAYSKKLEIERIAESSR 215
S+A SKK EIER+A+S+R
Sbjct: 166 TSFAISKKEEIERVAQSAR 184
>sp|P32552|RS7_HALMA 30S RIBOSOMAL PROTEIN S7P (HMAS7) >gi|421713|pir||S33228 ribosomal
protein S7 [validated] - Haloarcula marismortui
>gi|404483|gb|AAB27680.1| 30S subunit ribosomal protein
HmaS7 [Haloarcula marismortui, Peptide, 205 aa]
Length = 205
Score = 159 bits (397), Expect = 3e-38
Identities = 85/200 (42%), Positives = 126/200 (62%), Gaps = 18/200 (9%)
Query: 16 KVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSG 75
K+ G W D+E DPS + YI + P + HT GRHA K F K+ + IVERLIN++M++
Sbjct: 24 KLFGEWDITDIEYSDPSTERYITVTP--IAHTMGRHADKQFKKSEISIVERLINRLMQTD 81
Query: 76 GSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPRED 135
+ KK A +V EAF+++ +RT +NPIQVLV A+EN+APRE+
Sbjct: 82 EN----------------TGKKQLATSIVTEAFELVHERTDENPIQVLVSAVENSAPREE 125
Query: 136 TTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKD 195
T + +GGI AVD++P RR+D AL+ +A G ++T + AEALA+++I AAN D
Sbjct: 126 TVRLKYGGISVPKAVDVAPQRRVDQALKFLAEGVYGGSFKTTTTAAEALAQQLIGAANDD 185
Query: 196 PKSYAYSKKLEIERIAESSR 215
++YA ++K E ER+A ++R
Sbjct: 186 VQTYAVNQKEEKERVAAAAR 205
>gi|6322583 Ribosomal protein S5 (S2) (rp14) (YS8); Rps5p [Saccharomyces
cerevisiae] >gi|1173269|sp|P26783|RS5_YEAST 40S
RIBOSOMAL PROTEIN S5 (S2) (YS8) (RP14)
>gi|1078340|pir||S55720 ribosomal protein S5.e,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|895891|emb|CAA61550.1| (X89368) ribosomal protein S5
[Saccharomyces cerevisiae] >gi|1015849|emb|CAA89654.1|
(Z49623) ORF YJR123w [Saccharomyces cerevisiae]
Length = 225
Score = 155 bits (388), Expect = 4e-37
Identities = 88/203 (43%), Positives = 120/203 (58%), Gaps = 17/203 (8%)
Query: 14 EIKVMGRWSTEDVEVRDPSLKPYINL-EPRLLPHTHGRHAKKHFGKANVHIVERLINKIM 72
EIK+ +WS E+VEV+D SL Y+ + +P + HT GR+A K F KA I+ERL N +M
Sbjct: 39 EIKLFNKWSFEEVEVKDASLVDYVQVRQPIFVAHTAGRYANKRFRKAQCPIIERLTNSLM 98
Query: 73 RSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAP 132
+G + N KK+KA ++K II T +NPIQV+V AI N P
Sbjct: 99 MNGRN----------------NGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGP 142
Query: 133 REDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAA 192
REDTT V GG AVD+SP+RR++ A+ + +GA +R + AE LAEE+I AA
Sbjct: 143 REDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAA 202
Query: 193 NKDPKSYAYSKKLEIERIAESSR 215
SYA KK E+ER+A+S+R
Sbjct: 203 KGSSTSYAIKKKDELERVAKSNR 225
>sp|P15763|RS7_HALHA 30S RIBOSOMAL PROTEIN S7P (HMAS7) >gi|81069|pir||S03583 ribosomal
protein S7 [similarity] - Halobacterium salinarum
>gi|43546|emb|CAA40430.1| (X57144) ribosomal protein
HhS7 [Halobacterium halobium]
>gi|10582039|gb|AAG20688.1| (AE005138) 30S ribosomal
protein S7P; Rps7p [Halobacterium sp. NRC-1]
Length = 210
Score = 154 bits (385), Expect = 8e-37
Identities = 83/200 (41%), Positives = 128/200 (63%), Gaps = 18/200 (9%)
Query: 16 KVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSG 75
K+ G+W ++ DPS + Y+ + P + HT GRHA+K F K+ + IVERL N++M++G
Sbjct: 29 KLFGKWDVAEIHYEDPSTRRYLAVTP--VAHTMGRHAQKQFKKSEISIVERLANRLMKTG 86
Query: 76 GSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPRED 135
+ AG KK +A ++V++AF I+ +RT +NPIQVLV A+ENAAPRE+
Sbjct: 87 AN----AG------------KKQQALKIVRDAFDIVHERTDENPIQVLVSAVENAAPREE 130
Query: 136 TTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKD 195
T + +GGI AVD +P RR+D AL+ +A GA + ++T AEALA ++ AA+ +
Sbjct: 131 TVRLKYGGISVPQAVDTAPQRRVDQALKFLADGAHSASFKTPTDAAEALANQLAGAADYN 190
Query: 196 PKSYAYSKKLEIERIAESSR 215
++YA +K E ER+A ++R
Sbjct: 191 VQTYAIGQKKEKERVAAAAR 210
>gi|6677807 ribosomal protein S5; S5 ribosomal protein [Mus musculus]
>gi|3122833|sp|P97461|RS5_MOUSE 40S RIBOSOMAL PROTEIN S5
>gi|1685071|gb|AAB63526.1| (U78085) ribosomal protein S5
[Mus musculus]
Length = 204
Score = 152 bits (380), Expect = 3e-36
Identities = 87/205 (42%), Positives = 123/205 (59%), Gaps = 19/205 (9%)
Query: 14 EIKVMGRWSTEDVEVRDPSLKPYINLEPRL---LPHTHGRHAKKHFGKANVHIVERLINK 70
+IK+ G+WST+DV++ D SL+ YI ++ + LPH+ GR+A K F KA IVERL N
Sbjct: 16 DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNS 75
Query: 71 IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
+M G + N KK+ +VK AF+II TG+NP+QVLV AI N+
Sbjct: 76 MMMHGRN----------------NGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINS 119
Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
PRED+T + G AVD+SP+RR++ A+ + GA +R + AE LA+E+I
Sbjct: 120 GPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELIN 179
Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
AA SYA KK E+ER+A+S+R
Sbjct: 180 AAKGSSNSYAIKKKDELERVAKSNR 204
>emb|CAA73041.1| (Y12431) 5S ribosomal protein [Mus musculus]
Length = 204
Score = 152 bits (380), Expect = 3e-36
Identities = 87/205 (42%), Positives = 123/205 (59%), Gaps = 19/205 (9%)
Query: 14 EIKVMGRWSTEDVEVRDPSLKPYINLEPRL---LPHTHGRHAKKHFGKANVHIVERLINK 70
+IK+ G+WST+DV++ D SL+ YI ++ + LPH+ GR+A K F KA IVERL N
Sbjct: 16 DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNS 75
Query: 71 IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
+M G + N KK+ +VK AF+II TG+NP+QVLV AI N+
Sbjct: 76 MMMHGRN----------------NGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINS 119
Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
PRED+T + G AVD+SP+RR++ A+ + GA +R + AE LA+E+I
Sbjct: 120 GPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELIN 179
Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
AA SYA KK E+ER+A+S+R
Sbjct: 180 AAKGSSNSYAIKKKDELERVAKSNR 204
>sp|Q24186|RS5_DROME 40S RIBOSOMAL PROTEIN S5 >gi|1203905|gb|AAB61633.1| (U48394)
M(1)15D [Drosophila melanogaster]
>gi|7293320|gb|AAF48700.1| (AE003504) RpS5 gene product
[Drosophila melanogaster]
Length = 228
Score = 151 bits (377), Expect = 7e-36
Identities = 88/205 (42%), Positives = 122/205 (58%), Gaps = 19/205 (9%)
Query: 14 EIKVMGRWSTEDVEVRDPSLKPYINLEP---RLLPHTHGRHAKKHFGKANVHIVERLINK 70
EIK+ GRWS +DV V D SL+ YI+++ R LPH+ GR+A K F KA IVERL
Sbjct: 40 EIKLFGRWSCDDVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCS 99
Query: 71 IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
+M G + N KK+ A +VK +F+II TG+NP+Q+LV AI N+
Sbjct: 100 LMMKGRN----------------NGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINS 143
Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
PRED+T + G AVD+SP+RR++ A+ + GA +R + AE LA+E+I
Sbjct: 144 GPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELIN 203
Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
AA SYA KK E+ER+A+S+R
Sbjct: 204 AAKGSSNSYAIKKKDELERVAKSNR 228
>gi|4506729 ribosomal protein S5 [Homo sapiens] >gi|1173267|sp|P46782|RS5_HUMAN
40S RIBOSOMAL PROTEIN S5 >gi|1362935|pir||S55916
ribosomal protein S5, cytosolic - human
>gi|550021|gb|AAA85658.1| (U14970) ribosomal protein S5
[Homo sapiens] >gi|1096942|prf||2113200E ribosomal
protein S5 [Homo sapiens]
Length = 204
Score = 149 bits (373), Expect = 2e-35
Identities = 86/205 (41%), Positives = 122/205 (58%), Gaps = 19/205 (9%)
Query: 14 EIKVMGRWSTEDVEVRDPSLKPYINLEPRL---LPHTHGRHAKKHFGKANVHIVERLINK 70
+IK+ G+WST+DV++ D SL+ YI ++ + LPH+ GR+A F KA IVERL N
Sbjct: 16 DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANAFRKAQCPIVERLTNS 75
Query: 71 IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
+M G + N KK+ +VK AF+II TG+NP+QVLV AI N+
Sbjct: 76 MMMHGRN----------------NGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINS 119
Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
PRED+T + G AVD+SP+RR++ A+ + GA +R + AE LA+E+I
Sbjct: 120 GPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELIN 179
Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
AA SYA KK E+ER+A+S+R
Sbjct: 180 AAKGSSNSYAIKKKDELERVAKSNR 204
>sp|P15356|RS7_HALMO 30S RIBOSOMAL PROTEIN S7P >gi|81084|pir||S03584 ribosomal protein
S7 - Halococcus morrhuae >gi|43625|emb|CAA40435.1|
(X57145) ribosomal protein HcS7 [Halococcus morrhuae]
Length = 203
Score = 148 bits (371), Expect = 4e-35
Identities = 82/200 (41%), Positives = 123/200 (61%), Gaps = 18/200 (9%)
Query: 16 KVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSG 75
K+ RW +E DPS + YI + P + HT GRHA K F K+ + IVERLIN++M++
Sbjct: 22 KLFERWDVTGIEYDDPSTERYITVTP--VEHTMGRHAGKQFQKSEISIVERLINRLMQTD 79
Query: 76 GSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPRED 135
+ KK +A +V+ AF +I +RT ++P+QVLV A+ENAAPRE+
Sbjct: 80 EN----------------TGKKQQATRIVRNAFDLIAERTEESPVQVLVSAVENAAPREE 123
Query: 136 TTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKD 195
T + +GGI AVD++P RR+D AL+ IA G + +++ EALAE++ AAN D
Sbjct: 124 TVRLKYGGISVPQAVDVAPQRRVDQALKFIAEGTHSASFKSPTDAHEALAEQLTGAANYD 183
Query: 196 PKSYAYSKKLEIERIAESSR 215
++YA ++K E ER+A ++R
Sbjct: 184 VQTYAVNQKEEKERVAAAAR 203
>sp|P24050|RS5_RAT 40S RIBOSOMAL PROTEIN S5 >gi|70891|pir||R3RT5 ribosomal protein S5,
cytosolic [validated] - rat >gi|57137|emb|CAA41379.1|
(X58465) ribosomal protein S5 [Rattus rattus]
Length = 204
Score = 147 bits (368), Expect = 8e-35
Identities = 85/205 (41%), Positives = 121/205 (58%), Gaps = 19/205 (9%)
Query: 14 EIKVMGRWSTEDVEVRDPSLKPYINLEPRL---LPHTHGRHAKKHFGKANVHIVERLINK 70
+IK+ G+WST+DV++ D SL+ YI ++ + LPH+ GR+A F KA IVERL N
Sbjct: 16 DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANGFRKAQCPIVERLTNS 75
Query: 71 IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
+M G + N KK+ +VK AF+II TG+NP+QVLV AI N+
Sbjct: 76 MMMHGRN----------------NGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINS 119
Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
PRED+T + G AVD+SP+RR++ A+ + GA +R + AE LA+E+I
Sbjct: 120 GPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELIN 179
Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
A SYA KK E+ER+A+S+R
Sbjct: 180 ARKGSSNSYAIKKKDELERVAKSNR 204
>gb|AAF55116.1| (AE003706) CG7014 gene product [Drosophila melanogaster]
Length = 230
Score = 147 bits (367), Expect = 1e-34
Identities = 87/205 (42%), Positives = 120/205 (58%), Gaps = 19/205 (9%)
Query: 14 EIKVMGRWSTEDVEVRDPSLKPYINLEP---RLLPHTHGRHAKKHFGKANVHIVERLINK 70
EIK+ GRW+ +D+ + D SL+ YI ++ R LPH+ GR+A K F KA IVERL +
Sbjct: 42 EIKLFGRWACDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTSG 101
Query: 71 IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
+M G S N KK+ A +VK AF+II T +NP+QV V AI N+
Sbjct: 102 LMMKGRS----------------NGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNS 145
Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
PRED+T + G AVD+SP+RR++ A+ I GA +R + AE LA+E+I
Sbjct: 146 GPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELIN 205
Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
AA SYA KK E+ER+A+S+R
Sbjct: 206 AAKGSSNSYAIKKKDELERVAKSNR 230
>sp|O65731|RS5_CICAR 40S RIBOSOMAL PROTEIN S5 >gi|3043428|emb|CAA06491.1| (AJ005346) 40S
ribosomal protein S5 [Cicer arietinum]
Length = 197
Score = 146 bits (365), Expect = 2e-34
Identities = 85/206 (41%), Positives = 118/206 (57%), Gaps = 20/206 (9%)
Query: 14 EIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLIN 69
E+K+ RWS +DV++ D SL YI + P +PHT GR++ K F KA IVERL N
Sbjct: 8 EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67
Query: 70 KIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIEN 129
+M G + N KK+ A ++K A +II T +NPIQV+V A+ N
Sbjct: 68 SLMMHGRN----------------NGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVN 111
Query: 130 AAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEII 189
+ PRED T + G+ AVDISP+RR++ A+ + GA +R S AE LA+E+I
Sbjct: 112 SGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELI 171
Query: 190 LAANKDPKSYAYSKKLEIERIAESSR 215
AA SYA KK EIER+A+++R
Sbjct: 172 NAAKGSSNSYAIKKKDEIERVAKANR 197
>gb|AAC98068.1| (AC005896) 40S ribosomal protein S5 [Arabidopsis thaliana]
Length = 207
Score = 145 bits (363), Expect = 3e-34
Identities = 85/209 (40%), Positives = 119/209 (56%), Gaps = 20/209 (9%)
Query: 11 IPHEIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVER 66
+ +E+K+ RWS +DV V D SL YI ++P +PHT GR++ K F KA IVER
Sbjct: 15 LTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVER 74
Query: 67 LINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWA 126
L N +M G + N KK+ A +VK A +II + NPIQV++ A
Sbjct: 75 LTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDA 118
Query: 127 IENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAE 186
I N+ PRED T + G+ AVDISP+RR++ A+ + GA +R + AE LA+
Sbjct: 119 IVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLAD 178
Query: 187 EIILAANKDPKSYAYSKKLEIERIAESSR 215
E+I AA SYA KK EIER+A+++R
Sbjct: 179 ELINAAKGSSNSYAIKKKDEIERVAKANR 207
>sp|O93631|RS7_METBU 30S RIBOSOMAL PROTEIN S7P >gi|11276548|pir||T43942 ribosomal
protein S7 [imported] - Methanococcoides burtonii
(fragment) >gi|3924905|gb|AAC79154.1| (AF003869)
ribosomal protein S7 [Methanococcoides burtonii]
Length = 160
Score = 144 bits (360), Expect = 7e-34
Identities = 72/176 (40%), Positives = 113/176 (63%), Gaps = 16/176 (9%)
Query: 40 EPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVK 99
+P ++PHT G+HA++ F K+++ IVERL+N +MR+ + KK
Sbjct: 1 DPVIVPHTSGKHARQQFNKSDITIVERLVNNVMRNAQN----------------TGKKQI 44
Query: 100 AYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLD 159
A +V EAF I+ +T KNP+QVLV A+ NA PRE+ + +GGI AVD +P RR+D
Sbjct: 45 ALRIVDEAFDIVNSKTKKNPVQVLVEAVSNAGPREEVVRLKYGGISVPKAVDTAPQRRVD 104
Query: 160 VALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
ALRNI++G++ +++K S AE LA E+I A+N+D K ++ ++K ER+A+++R
Sbjct: 105 HALRNISIGSNQTAFKSKRSAAECLASELIAASNRDAKCFSINRKDGKERVAKAAR 160
>gb|AAF23210.1|AC016795_23 (AC016795) putative 40S ribosomal protein S5 [Arabidopsis thaliana]
>gi|10998132|dbj|BAB03103.1| (AP002040) 40S ribosomal
protein S5-like [Arabidopsis thaliana]
Length = 207
Score = 141 bits (353), Expect = 5e-33
Identities = 84/209 (40%), Positives = 118/209 (56%), Gaps = 20/209 (9%)
Query: 11 IPHEIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVER 66
+ +E+K+ RW+ +DV V D SL YI ++ +PHT GR++ K F KA IVER
Sbjct: 15 LTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVER 74
Query: 67 LINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWA 126
L N +M G + N KK+ A +VK A +II + NPIQV++ A
Sbjct: 75 LTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDA 118
Query: 127 IENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAE 186
I N+ PRED T + G+ AVDISP+RR++ A+ I GA +R + AE LA+
Sbjct: 119 IVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLAD 178
Query: 187 EIILAANKDPKSYAYSKKLEIERIAESSR 215
E+I AA SYA KK EIER+A+++R
Sbjct: 179 ELINAAKGSSNSYAIKKKDEIERVAKANR 207
>sp|O14277|RS5_SCHPO 40S RIBOSOMAL PROTEIN S5 >gi|7489960|pir||T39145 40s ribosomal
protein - fission yeast (Schizosaccharomyces pombe)
>gi|2408091|emb|CAB16296.1| (Z99168) 40s ribosomal
protein [Schizosaccharomyces pombe]
Length = 203
Score = 141 bits (351), Expect = 8e-33
Identities = 87/202 (43%), Positives = 115/202 (56%), Gaps = 17/202 (8%)
Query: 15 IKVMGRWSTEDVEVRDPSLKPYINL-EPRLLPHTHGRHAKKHFGKANVHIVERLINKIMR 73
IK+ ++ E VEV+D SL YI + + LPHT GR K F KA IVERL N +M
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGNGQPLPHTAGRFQTKRFRKARCFIVERLTNSLMM 77
Query: 74 SGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPR 133
+G + N KK+ A +VK AF+II T +NP+QVLV A+ PR
Sbjct: 78 NGRN----------------NGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPR 121
Query: 134 EDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAAN 193
ED+T + G AVD+SP+RR++ AL I +GA +R S +E LAEEII AA
Sbjct: 122 EDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAK 181
Query: 194 KDPKSYAYSKKLEIERIAESSR 215
SYA KK E+ER+A+S+R
Sbjct: 182 GSSNSYAIKKKDELERVAKSNR 203
>emb|CAB96005.1| (AL360054) 40s ribosomal protein s5 [Schizosaccharomyces pombe]
Length = 203
Score = 141 bits (351), Expect = 8e-33
Identities = 87/202 (43%), Positives = 115/202 (56%), Gaps = 17/202 (8%)
Query: 15 IKVMGRWSTEDVEVRDPSLKPYINL-EPRLLPHTHGRHAKKHFGKANVHIVERLINKIMR 73
IK+ ++ E VEV+D SL YI + + LPHT GR K F KA IVERL N +M
Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIGNGQPLPHTAGRFQTKRFRKARCFIVERLTNSLMM 77
Query: 74 SGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPR 133
+G + N KK+ A +VK AF+II T +NP+QVLV A+ PR
Sbjct: 78 NGRN----------------NGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPR 121
Query: 134 EDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAAN 193
ED+T + G AVD+SP+RR++ AL I +GA +R S +E LAEEII AA
Sbjct: 122 EDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAK 181
Query: 194 KDPKSYAYSKKLEIERIAESSR 215
SYA KK E+ER+A+S+R
Sbjct: 182 GSSNSYAIKKKDELERVAKSNR 203
>sp|P49041|RS5_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S5 >gi|7507188|pir||T24519
hypothetical protein T05E11.1 - Caenorhabditis elegans
>gi|3879461|emb|CAA92971.1| (Z68751) predicted using
Genefinder~contains similarity to Pfam domain: PF00177
(Ribosomal protein S7p/S5e), Score=227.0,
E-value=8.9e-65, N=1~cDNA EST EMBL:T01684 comes from
this gene; cDNA EST yk630a1.3 comes from this gene; cDNA
EST yk630a1.5 comes >
Length = 210
Score = 137 bits (342), Expect = 9e-32
Identities = 81/205 (39%), Positives = 116/205 (56%), Gaps = 19/205 (9%)
Query: 14 EIKVMGRWSTEDVEVRDPSLKPYINLEPR---LLPHTHGRHAKKHFGKANVHIVERLINK 70
E+ + G+WS + V V D SL YI ++ + LPH+ GR + F KA IVERL N
Sbjct: 22 EVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANS 81
Query: 71 IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
+M G + N KK+ +VK AF+II TG+NP+QVLV A+ N+
Sbjct: 82 LMMHGRN----------------NGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINS 125
Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
PRED+T + G AVD++P+RR++ A+ + GA +R + AE LA+E+I
Sbjct: 126 GPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELIN 185
Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
AA SYA KK E+ER+A+S+R
Sbjct: 186 AAKGSSNSYAIKKKDELERVAKSNR 210
>sp|Q08364|RS5_PODCA 40S RIBOSOMAL PROTEIN S5 >gi|479613|pir||S34861 ribosomal protein
S5.e, cytosolic - hydromedusa (Podocoryne carnea)
>gi|396254|emb|CAA50505.1| (X71383) 40S ribosomal
protein S5 [Podocoryne carnea]
Length = 210
Score = 136 bits (340), Expect = 2e-31
Identities = 79/205 (38%), Positives = 116/205 (56%), Gaps = 19/205 (9%)
Query: 14 EIKVMGRWSTEDVEVRDPSLKPYINLEPR---LLPHTHGRHAKKHFGKANVHIVERLINK 70
+IK+ G+W E + + D SL YI ++ LPHT R+A K F KA IVERL N
Sbjct: 22 DIKLFGKWPLEGLNISDISLTDYIAVKDNHAVYLPHTAARYAVKRFRKAQCPIVERLTNS 81
Query: 71 IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
+M G + N KK+ A +V+ +F+I+ TG+NP+Q++ AI N+
Sbjct: 82 LMMHGRN----------------NGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNS 125
Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
PRED+T + G AVD++P+RR++ A+ + GA +R S AE LA+E+I
Sbjct: 126 GPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELIN 185
Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
AA SYA KK E+ER+A+S+R
Sbjct: 186 AARGSSNSYAIKKKDELERVAKSNR 210
>sp|Q9YAU8|RS7_AERPE 30S RIBOSOMAL PROTEIN S7P >gi|7521390|pir||E72570 probable
ribosomal protein S7 APE1846 - Aeropyrum pernix (strain
K1) >gi|5105537|dbj|BAA80850.1| (AP000062) 132aa long
hypothetical 30S ribosomal protein S7 [Aeropyrum pernix]
Length = 132
Score = 132 bits (330), Expect = 2e-30
Identities = 76/148 (51%), Positives = 93/148 (62%), Gaps = 16/148 (10%)
Query: 68 INKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAI 127
+NK+MR G + KK AY +VK AF II TG+NPIQVLV AI
Sbjct: 1 MNKLMRPGRN----------------GGKKHLAYNIVKTAFDIIYFETGENPIQVLVKAI 44
Query: 128 ENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEE 187
EN+APREDTT + +GGI Y V+VD++P RR+D AL+ IA GA + E LAEE
Sbjct: 45 ENSAPREDTTKITYGGITYRVSVDVAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEE 104
Query: 188 IILAANKDPKSYAYSKKLEIERIAESSR 215
+ILAA DP+SYA +K EIERIA SSR
Sbjct: 105 LILAARGDPRSYAIRQKEEIERIALSSR 132
>pir||R3MX7 ribosomal protein S7 - Methanococcus vannielii
>gi|44785|emb|CAA34090.1| (X15970) S7 ribosomal protein
(AA 1-146) [Methanococcus vannielii]
Length = 146
Score = 131 bits (325), Expect = 9e-30
Identities = 70/161 (43%), Positives = 103/161 (63%), Gaps = 17/161 (10%)
Query: 56 FGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRT 115
F K +H+VERL NK+M + + KK + +++EA I+E RT
Sbjct: 2 FDKNKMHVVERLANKLMATQVN----------------TGKKNEVLSIIEEALTIVENRT 45
Query: 116 GKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYR 175
+NPIQV+V A+EN+ PRE+TT + +GGI + +VD+SP RRLD A RNI+LGAS ++
Sbjct: 46 KENPIQVVVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNISLGASQGAHK 105
Query: 176 TKMSFAEALAEEIILAANKD-PKSYAYSKKLEIERIAESSR 215
+K S A+ LA+E++ A+ D KS+A KK E ER+A+S+R
Sbjct: 106 SKKSIAQCLADELVAASKADMQKSFAVKKKEEKERVAQSAR 146
>sp|O24111|RS5_NICPL 40S RIBOSOMAL PROTEIN S5 >gi|7440226|pir||T16965 ribosomal protein
S5 - curled-leaved tobacco >gi|1620982|emb|CAA70084.1|
(Y08860) 40S ribosomal protein S5 [Nicotiana
plumbaginifolia]
Length = 154
Score = 119 bits (296), Expect = 2e-26
Identities = 71/170 (41%), Positives = 94/170 (54%), Gaps = 16/170 (9%)
Query: 46 HTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVK 105
HT GR+ K F KA IVERL N +M G + N KK+ A +VK
Sbjct: 1 HTAGRYQAKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVK 44
Query: 106 EAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNI 165
A +II T NPIQV+V A+ N+ PRED T + G+ AVDISP+RR+ A+ +
Sbjct: 45 HAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVSQAIYLL 104
Query: 166 ALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
GA +R + AE LA+E+I AA SYA KK EIER+A+++R
Sbjct: 105 TTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 154
>pir||S33718 ribosomal protein S7 - Sulfolobus solfataricus (fragment)
>gi|295944|emb|CAA50032.1| (X70701) ribosomal protein S7
[Sulfolobus solfataricus]
Length = 94
Score = 112 bits (277), Expect = 4e-24
Identities = 57/94 (60%), Positives = 70/94 (73%)
Query: 122 VLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFA 181
VLV AIEN+APRE+ T +M+GGI Y+VAVD++P RR+D+ALR+IA GA +
Sbjct: 1 VLVRAIENSAPREEVTRIMYGGIVYYVAVDVAPQRRIDLALRHIATGAKDSSFNNPKPIE 60
Query: 182 EALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
E LAEEII AAN DPKS+A +K EIERIA SSR
Sbjct: 61 EVLAEEIIAAANNDPKSFAIKRKEEIERIALSSR 94
>sp|O15587|RS5_ENTHI 40S RIBOSOMAL PROTEIN S5 >gi|2350900|dbj|BAA21982.1| (AB002732)
ribosomal protein S5 [Entamoeba histolytica]
Length = 148
Score = 107 bits (265), Expect = 1e-22
Identities = 68/162 (41%), Positives = 94/162 (57%), Gaps = 16/162 (9%)
Query: 54 KHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEK 113
K F K IVERL+ +M+ G + + KK+ A VV+E+F+II
Sbjct: 3 KPFRKIQCPIVERLVCCMMQHGKN----------------SGKKLLAMRVVEESFEIIHL 46
Query: 114 RTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKC 173
T KNPIQVLV AI NA+PRED+T V GG AVD+SP+RR++ AL + +G
Sbjct: 47 LTEKNPIQVLVDAIINASPREDSTRVGTGGNVRGQAVDVSPLRRINHALYLLIMGCRCGA 106
Query: 174 YRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
+R S AE LA+EI+ A+ S+A KK ++ER+A S+R
Sbjct: 107 FRNSKSLAECLADEIVNASKSYTGSFAIMKKEDLERVANSNR 148
>sp|P17291|RS7_THETH 30S RIBOSOMAL PROTEIN S7 >gi|70894|pir||R3TW7 ribosomal protein S7
- Thermus aquaticus >gi|10835569|pdb|1FJF|G Chain G,
Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit >gi|10835591|pdb|1FJG|G Chain G, Structure Of
The Thermus Thermophilus 30s Ribosomal Subunit In
Complex With The Antibiotics Streptomycin, Spectinomycin
And Paromomycin >gi|48275|emb|CAA36419.1| (X52165)
ribosomal protein S7 (AA 1-156) [Thermus thermophilus]
Length = 156
Score = 73.7 bits (178), Expect = 2e-12
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 25/153 (16%)
Query: 63 IVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQV 122
+V INKIMR G KK A + +A KII+++TG+ P++V
Sbjct: 22 LVTAFINKIMRDG--------------------KKNLAARIFYDACKIIQEKTGQEPLKV 61
Query: 123 LVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAE 182
A+EN PR + S GG Y V +++SP R+ +ALR + A+ R + A
Sbjct: 62 FKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAAN---QRPERRAAV 118
Query: 183 ALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
+A E++ AA + K A KK ++ER+AE++R
Sbjct: 119 RIAHELMDAA--EGKGGAVKKKEDVERMAEANR 149
>pdb|1RSS| Ribosomal Protein S7 From Thermus Thermophilus
Length = 151
Score = 73.7 bits (178), Expect = 2e-12
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 25/153 (16%)
Query: 63 IVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQV 122
+V INKIMR G KK A + +A KII+++TG+ P++V
Sbjct: 17 LVTAFINKIMRDG--------------------KKNLAARIFYDACKIIQEKTGQEPLKV 56
Query: 123 LVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAE 182
A+EN PR + S GG Y V +++SP R+ +ALR + A+ R + A
Sbjct: 57 FKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAAN---QRPERRAAV 113
Query: 183 ALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
+A E++ AA + K A KK ++ER+AE++R
Sbjct: 114 RIAHELMDAA--EGKGGAVKKKEDVERMAEANR 144
>pdb|1FKA|G Chain G, Structure Of Functionally Activated Small Ribosomal
Subunit At 3.3 A Resolution
Length = 151
Score = 73.7 bits (178), Expect = 2e-12
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 25/153 (16%)
Query: 63 IVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQV 122
+V INKIMR G KK A + +A KII+++TG+ P++V
Sbjct: 22 LVTAFINKIMRDG--------------------KKNLAARIFYDACKIIQEKTGQEPLKV 61
Query: 123 LVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAE 182
A+EN PR + S GG Y V +++SP R+ +ALR + A+ R + A
Sbjct: 62 FKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAAN---QRPERRAAV 118
Query: 183 ALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
+A E++ AA + K A KK ++ER+AE++R
Sbjct: 119 RIAHELMDAA--EGKGGAVKKKEDVERMAEANR 149
>sp|P22744|RS7_BACST 30S RIBOSOMAL PROTEIN S7 (BS7)
Length = 156
Score = 71.0 bits (171), Expect = 1e-11
Identities = 51/156 (32%), Positives = 78/156 (49%), Gaps = 25/156 (16%)
Query: 60 NVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNP 119
N +V RLINKIM G KK KA +++ AF II +RTGK+P
Sbjct: 19 NSKLVTRLINKIMIDG--------------------KKSKAQKILYTAFDIIRERTGKDP 58
Query: 120 IQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMS 179
++V A++N P + + GG Y V V++ P RR+ + LR + A R + +
Sbjct: 59 MEVFEQALKNVMPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYAR---LRNEKT 115
Query: 180 FAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
E LA EI+ AAN A K+ + ++AE+++
Sbjct: 116 MEERLANEIMDAANN--TGAAVKKREDTHKMAEANK 149
>pdb|1DV4|G Chain G, Partial Structure Of 16s Rna Of The Small Ribosomal
Subunit From Thermus Thermophilus >gi|6137690|pdb|1QD7|F
Chain F, Partial Model For 30s Ribosomal Subunit
Length = 135
Score = 71.0 bits (171), Expect = 1e-11
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 25/150 (16%)
Query: 63 IVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQV 122
+V INKIMR G KK A + +A KII+++TG+ P++V
Sbjct: 11 LVTAFINKIMRDG--------------------KKNLAARIFYDACKIIQEKTGQEPLKV 50
Query: 123 LVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAE 182
A+EN PR + S GG Y V +++SP R+ +ALR + A+ R + A
Sbjct: 51 FKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAAN---QRPERRAAV 107
Query: 183 ALAEEIILAANKDPKSYAYSKKLEIERIAE 212
+A E++ AA + K A KK ++ER+AE
Sbjct: 108 RIAHELMDAA--EGKGGAVKKKEDVERMAE 135
>pdb|1EG0|D Chain D, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
Length = 146
Score = 71.0 bits (171), Expect = 1e-11
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 25/150 (16%)
Query: 63 IVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQV 122
+V INKIMR G KK A + +A KII+++TG+ P++V
Sbjct: 22 LVTAFINKIMRDG--------------------KKNLAARIFYDACKIIQEKTGQEPLKV 61
Query: 123 LVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAE 182
A+EN PR + S GG Y V +++SP R+ +ALR + A+ R + A
Sbjct: 62 FKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAAN---QRPERRAAV 118
Query: 183 ALAEEIILAANKDPKSYAYSKKLEIERIAE 212
+A E++ AA + K A KK ++ER+AE
Sbjct: 119 RIAHELMDAA--EGKGGAVKKKEDVERMAE 146
>gi|11426958 ribosomal protein S5 [Homo sapiens]
Length = 105
Score = 70.6 bits (170), Expect = 1e-11
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 19/105 (18%)
Query: 14 EIKVMGRWSTEDVEVRDPSLKPYINLEPRL---LPHTHGRHAKKHFGKANVHIVERLINK 70
+IK+ G+WST+DV++ D SL+ YI ++ + LPH+ GR+A K F KA IVERL N
Sbjct: 16 DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNS 75
Query: 71 IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRT 115
+M G + N KK+ +VK AF+II T
Sbjct: 76 MMMHGRN----------------NGKKLMTVRIVKHAFEIIHLLT 104
>pir||JG0008 ribosomal protein S7 - Bacillus stearothermophilus
Length = 156
Score = 69.9 bits (168), Expect = 2e-11
Identities = 51/156 (32%), Positives = 78/156 (49%), Gaps = 25/156 (16%)
Query: 60 NVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNP 119
N +V RLINKIM G KK KA +++ AF II +RTGK+P
Sbjct: 19 NSKLVTRLINKIMIDG--------------------KKSKAQKILYTAFDIIRERTGKDP 58
Query: 120 IQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMS 179
++V A++N P + + GG Y V V++ P RR+ + LR + A R + +
Sbjct: 59 MKVFEQALKNVMPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYAR---LRGEKT 115
Query: 180 FAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
E LA EI+ AAN A K+ + ++AE+++
Sbjct: 116 MEERLANEIMDAANN--TGAAVKKREDTHKMAEANK 149
>gb|AAC98504.1| (AF091995) ribosomal protein [Plasmodium falciparum]
Length = 103
Score = 69.1 bits (166), Expect = 4e-11
Identities = 40/95 (42%), Positives = 51/95 (53%), Gaps = 16/95 (16%)
Query: 45 PHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVV 104
PHT GR+ KK KA IVERL+N +M G + N KK+KA +V
Sbjct: 23 PHTVGRYQKKRXRKALCPIVERLVNSMMMHGRN----------------NGKKLKAIRIV 66
Query: 105 KEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSV 139
AF+II TG+NP QV V A + PRED+T +
Sbjct: 67 AYAFEIIHLMTGENPXQVFVNAXQKGGPREDSTRI 101
>sp|O50564|RS7_THICU 30S RIBOSOMAL PROTEIN S7 >gi|2654447|gb|AAB87732.1| (U78300)
ribosomal protein S7 [Thiomonas cuprina]
Length = 156
Score = 68.3 bits (164), Expect = 7e-11
Identities = 41/123 (33%), Positives = 68/123 (54%), Gaps = 5/123 (4%)
Query: 93 LNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDI 152
L+ KK A +V AF+ I+ +TGK+PI++ A+ N P + S GG Y V V++
Sbjct: 32 LSGKKSIAESIVYGAFEAIQNKTGKDPIEIFSQALSNVKPMVEVKSRRVGGANYQVPVEV 91
Query: 153 SPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAE 212
P RR +A+R I A R + S A+ LA E++ A+ + + A ++ E+ R+AE
Sbjct: 92 RPQRRAALAMRWIREAAKK---RGEKSMAQRLANELVEAS--EGRGAAMKRRDEVHRMAE 146
Query: 213 SSR 215
+ +
Sbjct: 147 AHK 149
>sp|P38526|RS7_THEMA 30S RIBOSOMAL PROTEIN S7 >gi|7440231|pir||A72244 ribosomal protein
S7 - Thermotoga maritima (strain MSB8)
>gi|4982070|gb|AAD36571.1|AE001799_3 (AE001799)
ribosomal protein S7 [Thermotoga maritima]
Length = 155
Score = 67.9 bits (163), Expect = 9e-11
Identities = 52/153 (33%), Positives = 73/153 (46%), Gaps = 25/153 (16%)
Query: 63 IVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQV 122
+V +LIN++M G KK A ++V AF II ++T K+P++V
Sbjct: 21 LVAKLINRVMWDG--------------------KKTIAQKIVYGAFDIIREKTKKDPLEV 60
Query: 123 LVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAE 182
A+EN P + GG Y V +++ RR +ALR I A AK R E
Sbjct: 61 FRQAVENVKPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKKGR---PMKE 117
Query: 183 ALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
LAEEII A N A KK + R+AE++R
Sbjct: 118 KLAEEIIAAYNN--TGTAIKKKEDTHRMAEANR 148
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.134 0.386
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75101864
Number of Sequences: 2977
Number of extensions: 2884431
Number of successful extensions: 6877
Number of sequences better than 1.0e-10: 48
Number of HSP's better than 0.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6781
Number of HSP's gapped (non-prelim): 53
length of query: 215
length of database: 189,106,746
effective HSP length: 56
effective length of query: 159
effective length of database: 155,591,474
effective search space: 24739044366
effective search space used: 24739044366
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)