BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0428 (rps7P) DE:SSU ribosomal protein S7P (rps7P)
         (215 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75182 ssu ribosomal protein s7p (rps7p) PAB0428 - Pyrococc...   434  e-121
sp|O59230|RS7_PYRHO 30S RIBOSOMAL PROTEIN S7P >gi|7440211|pir||C...   427  e-119
sp|P29159|RS7_THECE 30S RIBOSOMAL PROTEIN S7P >gi|99244|pir||S18...   342  1e-93
emb|CAA47728.1| (X67313) ribosomal protein S7 [Thermococcus celer]    340  7e-93
pir||S54733 ribosomal protein S7 - Desulfurococcus mobilis            220  7e-57
sp|P54063|RS7_METJA 30S RIBOSOMAL PROTEIN S7P >gi|2119069|pir||F...   208  5e-53
sp|P35026|RS7_SULSO 30S RIBOSOMAL PROTEIN S7P >gi|7440233|pir||T...   206  1e-52
gb|AAK40560.1| SSU ribosomal protein S7AB (rpS7AB) [Sulfolobus s...   206  1e-52
sp|P41206|RS7_DESMO 30S RIBOSOMAL PROTEIN S7P >gi|410439|emb|CAA...   202  2e-51
sp|P17198|RS7_SULAC 30S RIBOSOMAL PROTEIN S7P >gi|70892|pir||R3U...   201  7e-51
gi|11499477 SSU ribosomal protein S7P (rps7P) [Archaeoglobus ful...   196  2e-49
sp|P14037|RS7_METVA 30S RIBOSOMAL PROTEIN S7P                         180  9e-45
sp|O27130|RS7_METTH 30S RIBOSOMAL PROTEIN S7P >gi|7440212|pir||D...   180  9e-45
emb|CAC11240.1| (AL445063) probable 30S RIBOSOMAL PROTEIN S7 [Th...   170  1e-41
sp|P32552|RS7_HALMA 30S RIBOSOMAL PROTEIN S7P (HMAS7) >gi|421713...   159  3e-38
gi|6322583 Ribosomal protein S5 (S2) (rp14) (YS8); Rps5p [Saccha...   155  4e-37
sp|P15763|RS7_HALHA 30S RIBOSOMAL PROTEIN S7P (HMAS7) >gi|81069|...   154  8e-37
gi|6677807 ribosomal protein S5; S5 ribosomal protein [Mus muscu...   152  3e-36
emb|CAA73041.1| (Y12431) 5S ribosomal protein [Mus musculus]          152  3e-36
sp|Q24186|RS5_DROME 40S RIBOSOMAL PROTEIN S5 >gi|1203905|gb|AAB6...   151  7e-36
gi|4506729 ribosomal protein S5 [Homo sapiens] >gi|1173267|sp|P4...   149  2e-35
sp|P15356|RS7_HALMO 30S RIBOSOMAL PROTEIN S7P >gi|81084|pir||S03...   148  4e-35
sp|P24050|RS5_RAT 40S RIBOSOMAL PROTEIN S5 >gi|70891|pir||R3RT5 ...   147  8e-35
gb|AAF55116.1| (AE003706) CG7014 gene product [Drosophila melano...   147  1e-34
sp|O65731|RS5_CICAR 40S RIBOSOMAL PROTEIN S5 >gi|3043428|emb|CAA...   146  2e-34
gb|AAC98068.1| (AC005896) 40S ribosomal protein S5 [Arabidopsis ...   145  3e-34
sp|O93631|RS7_METBU 30S RIBOSOMAL PROTEIN S7P >gi|11276548|pir||...   144  7e-34
gb|AAF23210.1|AC016795_23 (AC016795) putative 40S ribosomal prot...   141  5e-33
sp|O14277|RS5_SCHPO 40S RIBOSOMAL PROTEIN S5 >gi|7489960|pir||T3...   141  8e-33
emb|CAB96005.1| (AL360054) 40s ribosomal protein s5 [Schizosacch...   141  8e-33
sp|P49041|RS5_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S5 >gi|750718...   137  9e-32
sp|Q08364|RS5_PODCA 40S RIBOSOMAL PROTEIN S5 >gi|479613|pir||S34...   136  2e-31
sp|Q9YAU8|RS7_AERPE 30S RIBOSOMAL PROTEIN S7P >gi|7521390|pir||E...   132  2e-30
pir||R3MX7 ribosomal protein S7 - Methanococcus vannielii >gi|44...   131  9e-30
sp|O24111|RS5_NICPL 40S RIBOSOMAL PROTEIN S5 >gi|7440226|pir||T1...   119  2e-26
pir||S33718 ribosomal protein S7 - Sulfolobus solfataricus (frag...   112  4e-24
sp|O15587|RS5_ENTHI 40S RIBOSOMAL PROTEIN S5 >gi|2350900|dbj|BAA...   107  1e-22
sp|P17291|RS7_THETH 30S RIBOSOMAL PROTEIN S7 >gi|70894|pir||R3TW...    74  2e-12
pdb|1RSS|   Ribosomal Protein S7 From Thermus Thermophilus             74  2e-12
pdb|1FKA|G Chain G, Structure Of Functionally Activated Small Ri...    74  2e-12
sp|P22744|RS7_BACST 30S RIBOSOMAL PROTEIN S7 (BS7)                     71  1e-11
pdb|1DV4|G Chain G, Partial Structure Of 16s Rna Of The Small Ri...    71  1e-11
pdb|1EG0|D Chain D, Fitting Of Components With Known Structure I...    71  1e-11
gi|11426958 ribosomal protein S5 [Homo sapiens]                        71  1e-11
pir||JG0008 ribosomal protein S7 - Bacillus stearothermophilus         70  2e-11
gb|AAC98504.1| (AF091995) ribosomal protein [Plasmodium falciparum]    69  4e-11
sp|O50564|RS7_THICU 30S RIBOSOMAL PROTEIN S7 >gi|2654447|gb|AAB8...    68  7e-11
sp|P38526|RS7_THEMA 30S RIBOSOMAL PROTEIN S7 >gi|7440231|pir||A7...    68  9e-11

>pir||G75182 ssu ribosomal protein s7p (rps7p) PAB0428 - Pyrococcus abyssi
           (strain Orsay) >gi|5458052|emb|CAB49542.1| (AJ248284)
           SSU ribosomal protein S7P (rps7P) [Pyrococcus abyssi]
           Length = 215
           
 Score =  434 bits (1104), Expect = e-121
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MAKPLSERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKAN 60
           MAKPLSERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKAN
Sbjct: 1   MAKPLSERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKAN 60

Query: 61  VHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPI 120
           VHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPI
Sbjct: 61  VHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPI 120

Query: 121 QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSF 180
           QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSF
Sbjct: 121 QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSF 180

Query: 181 AEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
           AEALAEEIILAANKDPKSYAYSKKLEIERIAESSR
Sbjct: 181 AEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215


>sp|O59230|RS7_PYRHO 30S RIBOSOMAL PROTEIN S7P >gi|7440211|pir||C71031 probable
           ribosomal protein S7 - Pyrococcus horikoshii
           >gi|3257968|dbj|BAA30651.1| (AP000006) 218aa long
           hypothetical 30S ribosomal protein S7 [Pyrococcus
           horikoshii]
           Length = 218
           
 Score =  427 bits (1086), Expect = e-119
 Identities = 209/215 (97%), Positives = 214/215 (99%)

Query: 1   MAKPLSERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKAN 60
           +AKPL ERFFIPHEIKVMGRWSTEDVEV+DPSLKPYINLEPRLLPHTHGRHAKKHFGKAN
Sbjct: 4   VAKPLQERFFIPHEIKVMGRWSTEDVEVKDPSLKPYINLEPRLLPHTHGRHAKKHFGKAN 63

Query: 61  VHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPI 120
           VHIVERLINK+MRSGGSHYKVAGHFMRREHRSLNSKKV+AYEVVKEAFKIIEKRTGKNPI
Sbjct: 64  VHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPI 123

Query: 121 QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSF 180
           QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISP+RRLDVALRNIALGASAKCYRTKMSF
Sbjct: 124 QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSF 183

Query: 181 AEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
           AEALAEEIILAANKDPKSYAYSKKLEIERIAESSR
Sbjct: 184 AEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218


>sp|P29159|RS7_THECE 30S RIBOSOMAL PROTEIN S7P >gi|99244|pir||S18714 ribosomal protein
           S7 - Thermococcus celer >gi|58413|emb|CAA42850.1|
           (X60305) ribosomal protein S7 [Thermococcus celer]
           Length = 215
           
 Score =  342 bits (869), Expect = 1e-93
 Identities = 166/215 (77%), Positives = 192/215 (89%)

Query: 1   MAKPLSERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKAN 60
           MAK L+ERF+ P E+KVMGRWS EDV V DPSL+PYINLE RLLPH+HGRHAKK FGKAN
Sbjct: 1   MAKTLTERFYQPKELKVMGRWSVEDVTVNDPSLRPYINLEARLLPHSHGRHAKKAFGKAN 60

Query: 61  VHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPI 120
           VHIVERLINK+MRSG + +K  GHFMRR+ RSL SKK+KAYEVVKEAF IIE+RT +NPI
Sbjct: 61  VHIVERLINKVMRSGATSHKAGGHFMRRDDRSLMSKKMKAYEVVKEAFMIIERRTKQNPI 120

Query: 121 QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSF 180
           QVLV AIEN+APREDTT++ FGGIRYH+AVD+SP+RRLD+AL+NIALGASAKCYR K S+
Sbjct: 121 QVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSY 180

Query: 181 AEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
           A+ALAEEII AAN DPK++AYS+K EIERIA+SSR
Sbjct: 181 AQALAEEIIAAANADPKTFAYSRKEEIERIAQSSR 215


>emb|CAA47728.1| (X67313) ribosomal protein S7 [Thermococcus celer]
           Length = 215
           
 Score =  340 bits (863), Expect = 7e-93
 Identities = 165/213 (77%), Positives = 190/213 (88%)

Query: 1   MAKPLSERFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKAN 60
           MAK L+ERF+ P E+KVMGRWS EDV V DPSL+PYINLE RLLPH+HGRHAKK FGKAN
Sbjct: 1   MAKTLTERFYQPKELKVMGRWSVEDVTVNDPSLRPYINLEARLLPHSHGRHAKKAFGKAN 60

Query: 61  VHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPI 120
           VHIVERLINK+MRSG + +K  GHFMRR+ RSL SKK+KAYEVVKEAF IIE+RT +NPI
Sbjct: 61  VHIVERLINKVMRSGATSHKAGGHFMRRDDRSLMSKKMKAYEVVKEAFMIIERRTKQNPI 120

Query: 121 QVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSF 180
           QVLV AIEN+APREDTT++ FGGIRYH+AVD+SP+RRLD+AL+NIALGASAKCYR K S+
Sbjct: 121 QVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSY 180

Query: 181 AEALAEEIILAANKDPKSYAYSKKLEIERIAES 213
           A+ALAEEII AAN DPKS+AYS+K EIERIA+S
Sbjct: 181 AQALAEEIIAAANADPKSFAYSRKEEIERIAQS 213


>pir||S54733 ribosomal protein S7 - Desulfurococcus mobilis
           Length = 198
           
 Score =  220 bits (556), Expect = 7e-57
 Identities = 116/208 (55%), Positives = 146/208 (69%), Gaps = 16/208 (7%)

Query: 8   RFFIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERL 67
           R  +  EIK+  +WS + +EVRDPSLK YI L+P  LPHT GRH  + FGK +V IVERL
Sbjct: 7   RELVIKEIKLFNKWSYDFIEVRDPSLKKYICLKPVYLPHTGGRHEHRRFGKTHVPIVERL 66

Query: 68  INKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAI 127
           INK+MR G +                  KK  AY +VK+AF II  +TG+NPIQVLV AI
Sbjct: 67  INKVMRPGRNM----------------GKKHLAYHIVKKAFDIIHIKTGENPIQVLVRAI 110

Query: 128 ENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEE 187
           ENAAPRE+TT +M+GGI YHV+VD++P+RR+D+ALR++  GA  K + + +   EALAEE
Sbjct: 111 ENAAPREETTRIMYGGITYHVSVDVAPLRRIDLALRHLTEGARMKAFHSPIPIEEALAEE 170

Query: 188 IILAANKDPKSYAYSKKLEIERIAESSR 215
           I+LAA+ DPKSYA  KK EIERIA SSR
Sbjct: 171 IVLAASNDPKSYAIQKKEEIERIALSSR 198


>sp|P54063|RS7_METJA 30S RIBOSOMAL PROTEIN S7P >gi|2119069|pir||F64430 ribosomal protein
           S7 - Methanococcus jannaschii >gi|1591701|gb|AAB99051.1|
           (U67547) SSU ribosomal protein S7P (rpsG) [Methanococcus
           jannaschii]
           Length = 191
           
 Score =  208 bits (523), Expect = 5e-53
 Identities = 115/203 (56%), Positives = 143/203 (69%), Gaps = 17/203 (8%)

Query: 14  EIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMR 73
           EIKV GRWST+DV V+DP L+ YINL P  +PHT GR+ K+ F KA ++IVERL+NK+MR
Sbjct: 5   EIKVFGRWSTKDVVVKDPGLRNYINLTPIYVPHTAGRYTKRQFEKAKMNIVERLVNKVMR 64

Query: 74  SGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPR 133
                         RE  +   KK+KA ++V+ AF+IIEKRT +NPIQVLV AIENA PR
Sbjct: 65  --------------REENT--GKKLKALKIVENAFEIIEKRTKQNPIQVLVDAIENAGPR 108

Query: 134 EDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAAN 193
           EDTT + +GGI Y  +VD S +RR+DVALRNIALGA    +++K    EALAEEII AA 
Sbjct: 109 EDTTRISYGGIVYLQSVDCSSLRRIDVALRNIALGAYMAAHKSKKPIEEALAEEIIAAAR 168

Query: 194 KD-PKSYAYSKKLEIERIAESSR 215
            D  KSYA  KK E ER+A+S+R
Sbjct: 169 GDMQKSYAVRKKEETERVAQSAR 191


>sp|P35026|RS7_SULSO 30S RIBOSOMAL PROTEIN S7P >gi|7440233|pir||T11746 ribosomal protein
           S7 - Sulfolobus solfataricus >gi|510208|emb|CAA54161.1|
           (X76767) ribosomal protein S7 [Sulfolobus solfataricus]
           Length = 193
           
 Score =  206 bits (520), Expect = 1e-52
 Identities = 113/202 (55%), Positives = 137/202 (66%), Gaps = 17/202 (8%)

Query: 14  EIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMR 73
           +IKV  +W T+ VE+RDPSLK YI+L P  LPHT GRH  + FGKA V IVERLIN+IMR
Sbjct: 9   DIKVFSKWDTK-VEIRDPSLKKYISLMPVYLPHTGGRHEHRRFGKAKVPIVERLINQIMR 67

Query: 74  SGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPR 133
            G +                  KK  AY +VK AF II  +TG+NPIQVLV AIEN+APR
Sbjct: 68  PGRN----------------KGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPR 111

Query: 134 EDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAAN 193
           E+ T +M+GGI Y+VAVD++P RR+D+ALR+IA GA    +       E LAEEII AAN
Sbjct: 112 EEVTRIMYGGIVYYVAVDVAPQRRIDLALRHIATGAKDSSFNNPKPIEEVLAEEIIAAAN 171

Query: 194 KDPKSYAYSKKLEIERIAESSR 215
            DPKS+A  +K EIERIA SSR
Sbjct: 172 NDPKSFAIKRKEEIERIALSSR 193


>gb|AAK40560.1| SSU ribosomal protein S7AB (rpS7AB) [Sulfolobus solfataricus]
           Length = 193
           
 Score =  206 bits (520), Expect = 1e-52
 Identities = 114/202 (56%), Positives = 137/202 (67%), Gaps = 17/202 (8%)

Query: 14  EIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMR 73
           +IKV G+W T+ VE+RDPSLK YI+L P  LPHT GRH  + FGKA V IVERLIN+IMR
Sbjct: 9   DIKVFGKWDTK-VEIRDPSLKKYISLMPVYLPHTGGRHEHRRFGKAKVPIVERLINQIMR 67

Query: 74  SGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPR 133
            G +                  KK  AY +VK AF II  +TG+NPIQVLV AIEN+APR
Sbjct: 68  PGRN----------------KGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPR 111

Query: 134 EDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAAN 193
           E+ T +M+GGI Y+VAVD+SP RR+D+ALR+IA GA    +       E LAEEII AAN
Sbjct: 112 EEVTRIMYGGIVYYVAVDVSPQRRIDLALRHIATGAKDASFNNPKPIEEVLAEEIIAAAN 171

Query: 194 KDPKSYAYSKKLEIERIAESSR 215
            D KS+A  +K EIERIA SSR
Sbjct: 172 NDSKSFAIKRKEEIERIALSSR 193


>sp|P41206|RS7_DESMO 30S RIBOSOMAL PROTEIN S7P >gi|410439|emb|CAA51983.1| (X73582)
           ribosomal protein S7 [Desulfurococcus mobilis]
           Length = 170
           
 Score =  202 bits (509), Expect = 2e-51
 Identities = 107/186 (57%), Positives = 132/186 (70%), Gaps = 16/186 (8%)

Query: 30  DPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRRE 89
           DPSLK YI L+P  LPHT GRH  + FGK +V IVERLINK+MR G +            
Sbjct: 1   DPSLKKYICLKPVYLPHTGGRHEHRRFGKTHVPIVERLINKVMRPGRNM----------- 49

Query: 90  HRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVA 149
                 KK  AY +VK+AF II  +TG+NPIQVLV AIENAAPRE+TT +M+GGI YHV+
Sbjct: 50  -----GKKHLAYHIVKKAFDIIHIKTGENPIQVLVRAIENAAPREETTRIMYGGITYHVS 104

Query: 150 VDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIER 209
           VD++P+RR+D+ALR++  GA  K + + +   EALAEEI+LAA+ DPKSYA  KK EIER
Sbjct: 105 VDVAPLRRIDLALRHLTEGARMKAFHSPIPIEEALAEEIVLAASNDPKSYAIQKKEEIER 164

Query: 210 IAESSR 215
           IA SSR
Sbjct: 165 IALSSR 170


>sp|P17198|RS7_SULAC 30S RIBOSOMAL PROTEIN S7P >gi|70892|pir||R3UC7 ribosomal protein S7
           - Sulfolobus acidocaldarius >gi|46563|emb|CAA36607.1|
           (X52382) ribosomal protein S7 (AA 1-195) [Sulfolobus
           acidocaldarius] >gi|229086|prf||1817447A ribosomal
           protein S7 [Sulfolobus acidocaldarius]
           Length = 195
           
 Score =  201 bits (505), Expect = 7e-51
 Identities = 110/201 (54%), Positives = 134/201 (65%), Gaps = 17/201 (8%)

Query: 15  IKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRS 74
           +KV G+W T+ VEVRDPSLK YI+L    LPHT GRH  + FGK+ + IVERLIN +MR 
Sbjct: 12  VKVFGKWDTK-VEVRDPSLKKYIDLMSIYLPHTGGRHEHRRFGKSRIPIVERLINNLMRP 70

Query: 75  GGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPRE 134
           G +                  KK+ AY +VK  F II  +TG+NPIQVLV AIENAAPRE
Sbjct: 71  GRN----------------KGKKMLAYNIVKTTFDIIAVKTGQNPIQVLVRAIENAAPRE 114

Query: 135 DTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANK 194
           + T +M+GGI Y+VAVD++P RR+D+ALR++  GAS   +       EALAEEII AAN 
Sbjct: 115 EVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVTGASEASFNNPKPIEEALAEEIIAAANN 174

Query: 195 DPKSYAYSKKLEIERIAESSR 215
           D KS A  KK EIERIA SSR
Sbjct: 175 DNKSVAIRKKEEIERIALSSR 195


>gi|11499477 SSU ribosomal protein S7P (rps7P) [Archaeoglobus fulgidus]
           >gi|3914920|sp|O28386|RS7_ARCFU 30S RIBOSOMAL PROTEIN
           S7P >gi|7440213|pir||D69486 probable ribosomal protein
           S7 - Archaeoglobus fulgidus >gi|2648652|gb|AAB89361.1|
           (AE000972) SSU ribosomal protein S7P (rps7P)
           [Archaeoglobus fulgidus]
           Length = 194
           
 Score =  196 bits (492), Expect = 2e-49
 Identities = 102/206 (49%), Positives = 136/206 (65%), Gaps = 16/206 (7%)

Query: 10  FIPHEIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLIN 69
           F   E+ V G++   +V++ DP+L+ YI LEP+ +PH HGRHA   F K  V IVERLIN
Sbjct: 5   FTKEELLVFGKYDPSEVQISDPALESYICLEPKYVPHNHGRHANVPFAKQKVFIVERLIN 64

Query: 70  KIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIEN 129
           K+MR G +                  KK+ AY +VKEAF+IIEK+T KNPIQVLV AI N
Sbjct: 65  KVMRKGHN----------------TGKKILAYNIVKEAFEIIEKKTKKNPIQVLVDAIIN 108

Query: 130 AAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEII 189
           A PRE+   + +GGI    AVD S  RR+D+ALRNIA GA    +++K S A+ LA+EII
Sbjct: 109 AGPREEVVRLKYGGIAVPKAVDTSSSRRVDIALRNIAEGARRAAFKSKRSIAQCLADEII 168

Query: 190 LAANKDPKSYAYSKKLEIERIAESSR 215
            AAN + +S+A +KK E+ER+A+S+R
Sbjct: 169 AAANNESRSFAVAKKEEVERVAKSAR 194


>sp|P14037|RS7_METVA 30S RIBOSOMAL PROTEIN S7P
           Length = 194
           
 Score =  180 bits (453), Expect = 9e-45
 Identities = 93/203 (45%), Positives = 135/203 (65%), Gaps = 17/203 (8%)

Query: 14  EIKVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMR 73
           EIK+ G+W +  V V+DPSLK +I+L P L+PHT GR++KK F K  +H+VERL NK+M 
Sbjct: 8   EIKLFGKWDSTSVTVKDPSLKSHISLNPVLIPHTAGRNSKKMFDKNKMHVVERLANKLMA 67

Query: 74  SGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPR 133
           +  +                  KK +   +++EA  I+E RT +NPIQV+V A+EN+ PR
Sbjct: 68  TQVN----------------TGKKNEVLSIIEEALTIVENRTKENPIQVVVDALENSGPR 111

Query: 134 EDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAAN 193
           E+TT + +GGI +  +VD+SP RRLD A RNI+LGAS   +++K S A+ LA+E++ A+ 
Sbjct: 112 EETTRISYGGIAFLQSVDVSPSRRLDTAFRNISLGASQGAHKSKKSIAQCLADELVAASK 171

Query: 194 KD-PKSYAYSKKLEIERIAESSR 215
            D  KS+A  KK E ER+A+S+R
Sbjct: 172 ADMQKSFAVKKKEEKERVAQSAR 194


>sp|O27130|RS7_METTH 30S RIBOSOMAL PROTEIN S7P >gi|7440212|pir||D69007 ribosomal protein
           S7 - Methanobacterium thermoautotrophicum  (strain Delta
           H) >gi|2622155|gb|AAB85547.1| (AE000876) ribosomal
           protein S5 (E.coli S7) [Methanobacterium
           thermoautotrophicum]
           Length = 186
           
 Score =  180 bits (453), Expect = 9e-45
 Identities = 95/198 (47%), Positives = 129/198 (64%), Gaps = 16/198 (8%)

Query: 17  VMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSGG 76
           V  +W  ++V+V D  L  YI L+  L+PHT GRH K+ F K+ V IVERLINK+MR+  
Sbjct: 4   VFDKWELDEVKVEDMGLAKYICLDSILVPHTMGRHVKRQFAKSKVSIVERLINKVMRTER 63

Query: 77  SHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDT 136
           +                + KK KAY++V+EAF+II +RT +NP+Q+LV A+EN +PRE+T
Sbjct: 64  N----------------SGKKNKAYKIVQEAFEIINRRTKENPVQILVKAVENTSPREET 107

Query: 137 TSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDP 196
           T + +GGI Y VAVDISP RR+D++L  I  GA    ++ K S  E LA EI+LAA  D 
Sbjct: 108 TRIKYGGIGYQVAVDISPQRRVDLSLGFITRGAMQAAFKNKKSIEECLANEIMLAAEYDT 167

Query: 197 KSYAYSKKLEIERIAESS 214
           +S+A  KK E ERIA S+
Sbjct: 168 RSFAIQKKEEKERIARSA 185


>emb|CAC11240.1| (AL445063) probable 30S RIBOSOMAL PROTEIN S7 [Thermoplasma
           acidophilum]
           Length = 184
           
 Score =  170 bits (427), Expect = 1e-41
 Identities = 88/199 (44%), Positives = 127/199 (63%), Gaps = 16/199 (8%)

Query: 17  VMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSGG 76
           +  ++    VE+ DP +  YIN++  L  HT GR +  + GK N+++VERLINK+MRS  
Sbjct: 2   LFNKYDVNAVEIHDPGMVKYINVKSALNLHTGGRFSSYYAGKINMNVVERLINKLMRS-- 59

Query: 77  SHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDT 136
                              KK  AY++ +EAF+II ++T +NP+Q+L+ AIENA PRE+ 
Sbjct: 60  --------------EKWTGKKYSAYKITEEAFQIIAEKTKQNPLQILINAIENAGPREEV 105

Query: 137 TSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDP 196
           T + +GGI    +VD+SP RR+D ALRNIA GA+   +++K S    LA+EI+ AA  DP
Sbjct: 106 TRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMAAARNDP 165

Query: 197 KSYAYSKKLEIERIAESSR 215
            S+A SKK EIER+A+S+R
Sbjct: 166 TSFAISKKEEIERVAQSAR 184


>sp|P32552|RS7_HALMA 30S RIBOSOMAL PROTEIN S7P (HMAS7) >gi|421713|pir||S33228 ribosomal
           protein S7 [validated] - Haloarcula marismortui
           >gi|404483|gb|AAB27680.1| 30S subunit ribosomal protein
           HmaS7 [Haloarcula marismortui, Peptide, 205 aa]
           Length = 205
           
 Score =  159 bits (397), Expect = 3e-38
 Identities = 85/200 (42%), Positives = 126/200 (62%), Gaps = 18/200 (9%)

Query: 16  KVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSG 75
           K+ G W   D+E  DPS + YI + P  + HT GRHA K F K+ + IVERLIN++M++ 
Sbjct: 24  KLFGEWDITDIEYSDPSTERYITVTP--IAHTMGRHADKQFKKSEISIVERLINRLMQTD 81

Query: 76  GSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPRED 135
            +                  KK  A  +V EAF+++ +RT +NPIQVLV A+EN+APRE+
Sbjct: 82  EN----------------TGKKQLATSIVTEAFELVHERTDENPIQVLVSAVENSAPREE 125

Query: 136 TTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKD 195
           T  + +GGI    AVD++P RR+D AL+ +A G     ++T  + AEALA+++I AAN D
Sbjct: 126 TVRLKYGGISVPKAVDVAPQRRVDQALKFLAEGVYGGSFKTTTTAAEALAQQLIGAANDD 185

Query: 196 PKSYAYSKKLEIERIAESSR 215
            ++YA ++K E ER+A ++R
Sbjct: 186 VQTYAVNQKEEKERVAAAAR 205


>gi|6322583 Ribosomal protein S5 (S2) (rp14) (YS8); Rps5p [Saccharomyces
           cerevisiae] >gi|1173269|sp|P26783|RS5_YEAST 40S
           RIBOSOMAL PROTEIN S5 (S2) (YS8) (RP14)
           >gi|1078340|pir||S55720 ribosomal protein S5.e,
           cytosolic - yeast (Saccharomyces cerevisiae)
           >gi|895891|emb|CAA61550.1| (X89368) ribosomal protein S5
           [Saccharomyces cerevisiae] >gi|1015849|emb|CAA89654.1|
           (Z49623) ORF YJR123w [Saccharomyces cerevisiae]
           Length = 225
           
 Score =  155 bits (388), Expect = 4e-37
 Identities = 88/203 (43%), Positives = 120/203 (58%), Gaps = 17/203 (8%)

Query: 14  EIKVMGRWSTEDVEVRDPSLKPYINL-EPRLLPHTHGRHAKKHFGKANVHIVERLINKIM 72
           EIK+  +WS E+VEV+D SL  Y+ + +P  + HT GR+A K F KA   I+ERL N +M
Sbjct: 39  EIKLFNKWSFEEVEVKDASLVDYVQVRQPIFVAHTAGRYANKRFRKAQCPIIERLTNSLM 98

Query: 73  RSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAP 132
            +G +                N KK+KA  ++K    II   T +NPIQV+V AI N  P
Sbjct: 99  MNGRN----------------NGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGP 142

Query: 133 REDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAA 192
           REDTT V  GG     AVD+SP+RR++ A+  + +GA    +R   + AE LAEE+I AA
Sbjct: 143 REDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAA 202

Query: 193 NKDPKSYAYSKKLEIERIAESSR 215
                SYA  KK E+ER+A+S+R
Sbjct: 203 KGSSTSYAIKKKDELERVAKSNR 225


>sp|P15763|RS7_HALHA 30S RIBOSOMAL PROTEIN S7P (HMAS7) >gi|81069|pir||S03583 ribosomal
           protein S7 [similarity] - Halobacterium salinarum
           >gi|43546|emb|CAA40430.1| (X57144) ribosomal protein
           HhS7 [Halobacterium halobium]
           >gi|10582039|gb|AAG20688.1| (AE005138) 30S ribosomal
           protein S7P; Rps7p [Halobacterium sp. NRC-1]
           Length = 210
           
 Score =  154 bits (385), Expect = 8e-37
 Identities = 83/200 (41%), Positives = 128/200 (63%), Gaps = 18/200 (9%)

Query: 16  KVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSG 75
           K+ G+W   ++   DPS + Y+ + P  + HT GRHA+K F K+ + IVERL N++M++G
Sbjct: 29  KLFGKWDVAEIHYEDPSTRRYLAVTP--VAHTMGRHAQKQFKKSEISIVERLANRLMKTG 86

Query: 76  GSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPRED 135
            +    AG            KK +A ++V++AF I+ +RT +NPIQVLV A+ENAAPRE+
Sbjct: 87  AN----AG------------KKQQALKIVRDAFDIVHERTDENPIQVLVSAVENAAPREE 130

Query: 136 TTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKD 195
           T  + +GGI    AVD +P RR+D AL+ +A GA +  ++T    AEALA ++  AA+ +
Sbjct: 131 TVRLKYGGISVPQAVDTAPQRRVDQALKFLADGAHSASFKTPTDAAEALANQLAGAADYN 190

Query: 196 PKSYAYSKKLEIERIAESSR 215
            ++YA  +K E ER+A ++R
Sbjct: 191 VQTYAIGQKKEKERVAAAAR 210


>gi|6677807 ribosomal protein S5; S5 ribosomal protein [Mus musculus]
           >gi|3122833|sp|P97461|RS5_MOUSE 40S RIBOSOMAL PROTEIN S5
           >gi|1685071|gb|AAB63526.1| (U78085) ribosomal protein S5
           [Mus musculus]
           Length = 204
           
 Score =  152 bits (380), Expect = 3e-36
 Identities = 87/205 (42%), Positives = 123/205 (59%), Gaps = 19/205 (9%)

Query: 14  EIKVMGRWSTEDVEVRDPSLKPYINLEPRL---LPHTHGRHAKKHFGKANVHIVERLINK 70
           +IK+ G+WST+DV++ D SL+ YI ++ +    LPH+ GR+A K F KA   IVERL N 
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNS 75

Query: 71  IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
           +M  G +                N KK+    +VK AF+II   TG+NP+QVLV AI N+
Sbjct: 76  MMMHGRN----------------NGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINS 119

Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
            PRED+T +   G     AVD+SP+RR++ A+  +  GA    +R   + AE LA+E+I 
Sbjct: 120 GPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELIN 179

Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
           AA     SYA  KK E+ER+A+S+R
Sbjct: 180 AAKGSSNSYAIKKKDELERVAKSNR 204


>emb|CAA73041.1| (Y12431) 5S ribosomal protein [Mus musculus]
           Length = 204
           
 Score =  152 bits (380), Expect = 3e-36
 Identities = 87/205 (42%), Positives = 123/205 (59%), Gaps = 19/205 (9%)

Query: 14  EIKVMGRWSTEDVEVRDPSLKPYINLEPRL---LPHTHGRHAKKHFGKANVHIVERLINK 70
           +IK+ G+WST+DV++ D SL+ YI ++ +    LPH+ GR+A K F KA   IVERL N 
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNS 75

Query: 71  IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
           +M  G +                N KK+    +VK AF+II   TG+NP+QVLV AI N+
Sbjct: 76  MMMHGRN----------------NGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINS 119

Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
            PRED+T +   G     AVD+SP+RR++ A+  +  GA    +R   + AE LA+E+I 
Sbjct: 120 GPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELIN 179

Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
           AA     SYA  KK E+ER+A+S+R
Sbjct: 180 AAKGSSNSYAIKKKDELERVAKSNR 204


>sp|Q24186|RS5_DROME 40S RIBOSOMAL PROTEIN S5 >gi|1203905|gb|AAB61633.1| (U48394)
           M(1)15D [Drosophila melanogaster]
           >gi|7293320|gb|AAF48700.1| (AE003504) RpS5 gene product
           [Drosophila melanogaster]
           Length = 228
           
 Score =  151 bits (377), Expect = 7e-36
 Identities = 88/205 (42%), Positives = 122/205 (58%), Gaps = 19/205 (9%)

Query: 14  EIKVMGRWSTEDVEVRDPSLKPYINLEP---RLLPHTHGRHAKKHFGKANVHIVERLINK 70
           EIK+ GRWS +DV V D SL+ YI+++    R LPH+ GR+A K F KA   IVERL   
Sbjct: 40  EIKLFGRWSCDDVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCS 99

Query: 71  IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
           +M  G +                N KK+ A  +VK +F+II   TG+NP+Q+LV AI N+
Sbjct: 100 LMMKGRN----------------NGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINS 143

Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
            PRED+T +   G     AVD+SP+RR++ A+  +  GA    +R   + AE LA+E+I 
Sbjct: 144 GPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELIN 203

Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
           AA     SYA  KK E+ER+A+S+R
Sbjct: 204 AAKGSSNSYAIKKKDELERVAKSNR 228


>gi|4506729 ribosomal protein S5 [Homo sapiens] >gi|1173267|sp|P46782|RS5_HUMAN
           40S RIBOSOMAL PROTEIN S5 >gi|1362935|pir||S55916
           ribosomal protein S5, cytosolic - human
           >gi|550021|gb|AAA85658.1| (U14970) ribosomal protein S5
           [Homo sapiens] >gi|1096942|prf||2113200E ribosomal
           protein S5 [Homo sapiens]
           Length = 204
           
 Score =  149 bits (373), Expect = 2e-35
 Identities = 86/205 (41%), Positives = 122/205 (58%), Gaps = 19/205 (9%)

Query: 14  EIKVMGRWSTEDVEVRDPSLKPYINLEPRL---LPHTHGRHAKKHFGKANVHIVERLINK 70
           +IK+ G+WST+DV++ D SL+ YI ++ +    LPH+ GR+A   F KA   IVERL N 
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANAFRKAQCPIVERLTNS 75

Query: 71  IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
           +M  G +                N KK+    +VK AF+II   TG+NP+QVLV AI N+
Sbjct: 76  MMMHGRN----------------NGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINS 119

Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
            PRED+T +   G     AVD+SP+RR++ A+  +  GA    +R   + AE LA+E+I 
Sbjct: 120 GPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELIN 179

Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
           AA     SYA  KK E+ER+A+S+R
Sbjct: 180 AAKGSSNSYAIKKKDELERVAKSNR 204


>sp|P15356|RS7_HALMO 30S RIBOSOMAL PROTEIN S7P >gi|81084|pir||S03584 ribosomal protein
           S7 - Halococcus morrhuae >gi|43625|emb|CAA40435.1|
           (X57145) ribosomal protein HcS7 [Halococcus morrhuae]
           Length = 203
           
 Score =  148 bits (371), Expect = 4e-35
 Identities = 82/200 (41%), Positives = 123/200 (61%), Gaps = 18/200 (9%)

Query: 16  KVMGRWSTEDVEVRDPSLKPYINLEPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSG 75
           K+  RW    +E  DPS + YI + P  + HT GRHA K F K+ + IVERLIN++M++ 
Sbjct: 22  KLFERWDVTGIEYDDPSTERYITVTP--VEHTMGRHAGKQFQKSEISIVERLINRLMQTD 79

Query: 76  GSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPRED 135
            +                  KK +A  +V+ AF +I +RT ++P+QVLV A+ENAAPRE+
Sbjct: 80  EN----------------TGKKQQATRIVRNAFDLIAERTEESPVQVLVSAVENAAPREE 123

Query: 136 TTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKD 195
           T  + +GGI    AVD++P RR+D AL+ IA G  +  +++     EALAE++  AAN D
Sbjct: 124 TVRLKYGGISVPQAVDVAPQRRVDQALKFIAEGTHSASFKSPTDAHEALAEQLTGAANYD 183

Query: 196 PKSYAYSKKLEIERIAESSR 215
            ++YA ++K E ER+A ++R
Sbjct: 184 VQTYAVNQKEEKERVAAAAR 203


>sp|P24050|RS5_RAT 40S RIBOSOMAL PROTEIN S5 >gi|70891|pir||R3RT5 ribosomal protein S5,
           cytosolic [validated] - rat >gi|57137|emb|CAA41379.1|
           (X58465) ribosomal protein  S5 [Rattus rattus]
           Length = 204
           
 Score =  147 bits (368), Expect = 8e-35
 Identities = 85/205 (41%), Positives = 121/205 (58%), Gaps = 19/205 (9%)

Query: 14  EIKVMGRWSTEDVEVRDPSLKPYINLEPRL---LPHTHGRHAKKHFGKANVHIVERLINK 70
           +IK+ G+WST+DV++ D SL+ YI ++ +    LPH+ GR+A   F KA   IVERL N 
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANGFRKAQCPIVERLTNS 75

Query: 71  IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
           +M  G +                N KK+    +VK AF+II   TG+NP+QVLV AI N+
Sbjct: 76  MMMHGRN----------------NGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINS 119

Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
            PRED+T +   G     AVD+SP+RR++ A+  +  GA    +R   + AE LA+E+I 
Sbjct: 120 GPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELIN 179

Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
           A      SYA  KK E+ER+A+S+R
Sbjct: 180 ARKGSSNSYAIKKKDELERVAKSNR 204


>gb|AAF55116.1| (AE003706) CG7014 gene product [Drosophila melanogaster]
           Length = 230
           
 Score =  147 bits (367), Expect = 1e-34
 Identities = 87/205 (42%), Positives = 120/205 (58%), Gaps = 19/205 (9%)

Query: 14  EIKVMGRWSTEDVEVRDPSLKPYINLEP---RLLPHTHGRHAKKHFGKANVHIVERLINK 70
           EIK+ GRW+ +D+ + D SL+ YI ++    R LPH+ GR+A K F KA   IVERL + 
Sbjct: 42  EIKLFGRWACDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTSG 101

Query: 71  IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
           +M  G S                N KK+ A  +VK AF+II   T +NP+QV V AI N+
Sbjct: 102 LMMKGRS----------------NGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNS 145

Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
            PRED+T +   G     AVD+SP+RR++ A+  I  GA    +R   + AE LA+E+I 
Sbjct: 146 GPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELIN 205

Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
           AA     SYA  KK E+ER+A+S+R
Sbjct: 206 AAKGSSNSYAIKKKDELERVAKSNR 230


>sp|O65731|RS5_CICAR 40S RIBOSOMAL PROTEIN S5 >gi|3043428|emb|CAA06491.1| (AJ005346) 40S
           ribosomal protein S5 [Cicer arietinum]
           Length = 197
           
 Score =  146 bits (365), Expect = 2e-34
 Identities = 85/206 (41%), Positives = 118/206 (57%), Gaps = 20/206 (9%)

Query: 14  EIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLIN 69
           E+K+  RWS +DV++ D SL  YI + P      +PHT GR++ K F KA   IVERL N
Sbjct: 8   EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67

Query: 70  KIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIEN 129
            +M  G +                N KK+ A  ++K A +II   T +NPIQV+V A+ N
Sbjct: 68  SLMMHGRN----------------NGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVN 111

Query: 130 AAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEII 189
           + PRED T +   G+    AVDISP+RR++ A+  +  GA    +R   S AE LA+E+I
Sbjct: 112 SGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELI 171

Query: 190 LAANKDPKSYAYSKKLEIERIAESSR 215
            AA     SYA  KK EIER+A+++R
Sbjct: 172 NAAKGSSNSYAIKKKDEIERVAKANR 197


>gb|AAC98068.1| (AC005896) 40S ribosomal protein S5 [Arabidopsis thaliana]
           Length = 207
           
 Score =  145 bits (363), Expect = 3e-34
 Identities = 85/209 (40%), Positives = 119/209 (56%), Gaps = 20/209 (9%)

Query: 11  IPHEIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVER 66
           + +E+K+  RWS +DV V D SL  YI ++P      +PHT GR++ K F KA   IVER
Sbjct: 15  LTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVER 74

Query: 67  LINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWA 126
           L N +M  G +                N KK+ A  +VK A +II   +  NPIQV++ A
Sbjct: 75  LTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDA 118

Query: 127 IENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAE 186
           I N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +R   + AE LA+
Sbjct: 119 IVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLAD 178

Query: 187 EIILAANKDPKSYAYSKKLEIERIAESSR 215
           E+I AA     SYA  KK EIER+A+++R
Sbjct: 179 ELINAAKGSSNSYAIKKKDEIERVAKANR 207


>sp|O93631|RS7_METBU 30S RIBOSOMAL PROTEIN S7P >gi|11276548|pir||T43942 ribosomal
           protein S7 [imported] - Methanococcoides burtonii
           (fragment) >gi|3924905|gb|AAC79154.1| (AF003869)
           ribosomal protein S7 [Methanococcoides burtonii]
           Length = 160
           
 Score =  144 bits (360), Expect = 7e-34
 Identities = 72/176 (40%), Positives = 113/176 (63%), Gaps = 16/176 (9%)

Query: 40  EPRLLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVK 99
           +P ++PHT G+HA++ F K+++ IVERL+N +MR+  +                  KK  
Sbjct: 1   DPVIVPHTSGKHARQQFNKSDITIVERLVNNVMRNAQN----------------TGKKQI 44

Query: 100 AYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLD 159
           A  +V EAF I+  +T KNP+QVLV A+ NA PRE+   + +GGI    AVD +P RR+D
Sbjct: 45  ALRIVDEAFDIVNSKTKKNPVQVLVEAVSNAGPREEVVRLKYGGISVPKAVDTAPQRRVD 104

Query: 160 VALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
            ALRNI++G++   +++K S AE LA E+I A+N+D K ++ ++K   ER+A+++R
Sbjct: 105 HALRNISIGSNQTAFKSKRSAAECLASELIAASNRDAKCFSINRKDGKERVAKAAR 160


>gb|AAF23210.1|AC016795_23 (AC016795) putative 40S ribosomal protein S5 [Arabidopsis thaliana]
           >gi|10998132|dbj|BAB03103.1| (AP002040) 40S ribosomal
           protein S5-like [Arabidopsis thaliana]
           Length = 207
           
 Score =  141 bits (353), Expect = 5e-33
 Identities = 84/209 (40%), Positives = 118/209 (56%), Gaps = 20/209 (9%)

Query: 11  IPHEIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVER 66
           + +E+K+  RW+ +DV V D SL  YI ++       +PHT GR++ K F KA   IVER
Sbjct: 15  LTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVER 74

Query: 67  LINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWA 126
           L N +M  G +                N KK+ A  +VK A +II   +  NPIQV++ A
Sbjct: 75  LTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDA 118

Query: 127 IENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAE 186
           I N+ PRED T +   G+    AVDISP+RR++ A+  I  GA    +R   + AE LA+
Sbjct: 119 IVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLAD 178

Query: 187 EIILAANKDPKSYAYSKKLEIERIAESSR 215
           E+I AA     SYA  KK EIER+A+++R
Sbjct: 179 ELINAAKGSSNSYAIKKKDEIERVAKANR 207


>sp|O14277|RS5_SCHPO 40S RIBOSOMAL PROTEIN S5 >gi|7489960|pir||T39145 40s ribosomal
           protein - fission yeast (Schizosaccharomyces pombe)
           >gi|2408091|emb|CAB16296.1| (Z99168) 40s ribosomal
           protein [Schizosaccharomyces pombe]
           Length = 203
           
 Score =  141 bits (351), Expect = 8e-33
 Identities = 87/202 (43%), Positives = 115/202 (56%), Gaps = 17/202 (8%)

Query: 15  IKVMGRWSTEDVEVRDPSLKPYINL-EPRLLPHTHGRHAKKHFGKANVHIVERLINKIMR 73
           IK+  ++  E VEV+D SL  YI +   + LPHT GR   K F KA   IVERL N +M 
Sbjct: 18  IKLFNKFPFEGVEVKDISLVDYITIGNGQPLPHTAGRFQTKRFRKARCFIVERLTNSLMM 77

Query: 74  SGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPR 133
           +G +                N KK+ A  +VK AF+II   T +NP+QVLV A+    PR
Sbjct: 78  NGRN----------------NGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPR 121

Query: 134 EDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAAN 193
           ED+T +   G     AVD+SP+RR++ AL  I +GA    +R   S +E LAEEII AA 
Sbjct: 122 EDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAK 181

Query: 194 KDPKSYAYSKKLEIERIAESSR 215
               SYA  KK E+ER+A+S+R
Sbjct: 182 GSSNSYAIKKKDELERVAKSNR 203


>emb|CAB96005.1| (AL360054) 40s ribosomal protein s5 [Schizosaccharomyces pombe]
           Length = 203
           
 Score =  141 bits (351), Expect = 8e-33
 Identities = 87/202 (43%), Positives = 115/202 (56%), Gaps = 17/202 (8%)

Query: 15  IKVMGRWSTEDVEVRDPSLKPYINL-EPRLLPHTHGRHAKKHFGKANVHIVERLINKIMR 73
           IK+  ++  E VEV+D SL  YI +   + LPHT GR   K F KA   IVERL N +M 
Sbjct: 18  IKLFNKFPFEGVEVKDISLVDYITIGNGQPLPHTAGRFQTKRFRKARCFIVERLTNSLMM 77

Query: 74  SGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPR 133
           +G +                N KK+ A  +VK AF+II   T +NP+QVLV A+    PR
Sbjct: 78  NGRN----------------NGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPR 121

Query: 134 EDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAAN 193
           ED+T +   G     AVD+SP+RR++ AL  I +GA    +R   S +E LAEEII AA 
Sbjct: 122 EDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAK 181

Query: 194 KDPKSYAYSKKLEIERIAESSR 215
               SYA  KK E+ER+A+S+R
Sbjct: 182 GSSNSYAIKKKDELERVAKSNR 203


>sp|P49041|RS5_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S5 >gi|7507188|pir||T24519
           hypothetical protein T05E11.1 - Caenorhabditis elegans
           >gi|3879461|emb|CAA92971.1| (Z68751) predicted using
           Genefinder~contains similarity to Pfam domain: PF00177
           (Ribosomal protein S7p/S5e), Score=227.0,
           E-value=8.9e-65, N=1~cDNA EST EMBL:T01684 comes from
           this gene; cDNA EST yk630a1.3 comes from this gene; cDNA
           EST yk630a1.5 comes >
           Length = 210
           
 Score =  137 bits (342), Expect = 9e-32
 Identities = 81/205 (39%), Positives = 116/205 (56%), Gaps = 19/205 (9%)

Query: 14  EIKVMGRWSTEDVEVRDPSLKPYINLEPR---LLPHTHGRHAKKHFGKANVHIVERLINK 70
           E+ + G+WS + V V D SL  YI ++ +    LPH+ GR   + F KA   IVERL N 
Sbjct: 22  EVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANS 81

Query: 71  IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
           +M  G +                N KK+    +VK AF+II   TG+NP+QVLV A+ N+
Sbjct: 82  LMMHGRN----------------NGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINS 125

Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
            PRED+T +   G     AVD++P+RR++ A+  +  GA    +R   + AE LA+E+I 
Sbjct: 126 GPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELIN 185

Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
           AA     SYA  KK E+ER+A+S+R
Sbjct: 186 AAKGSSNSYAIKKKDELERVAKSNR 210


>sp|Q08364|RS5_PODCA 40S RIBOSOMAL PROTEIN S5 >gi|479613|pir||S34861 ribosomal protein
           S5.e, cytosolic - hydromedusa (Podocoryne carnea)
           >gi|396254|emb|CAA50505.1| (X71383) 40S ribosomal
           protein S5 [Podocoryne carnea]
           Length = 210
           
 Score =  136 bits (340), Expect = 2e-31
 Identities = 79/205 (38%), Positives = 116/205 (56%), Gaps = 19/205 (9%)

Query: 14  EIKVMGRWSTEDVEVRDPSLKPYINLEPR---LLPHTHGRHAKKHFGKANVHIVERLINK 70
           +IK+ G+W  E + + D SL  YI ++      LPHT  R+A K F KA   IVERL N 
Sbjct: 22  DIKLFGKWPLEGLNISDISLTDYIAVKDNHAVYLPHTAARYAVKRFRKAQCPIVERLTNS 81

Query: 71  IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 130
           +M  G +                N KK+ A  +V+ +F+I+   TG+NP+Q++  AI N+
Sbjct: 82  LMMHGRN----------------NGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNS 125

Query: 131 APREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 190
            PRED+T +   G     AVD++P+RR++ A+  +  GA    +R   S AE LA+E+I 
Sbjct: 126 GPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELIN 185

Query: 191 AANKDPKSYAYSKKLEIERIAESSR 215
           AA     SYA  KK E+ER+A+S+R
Sbjct: 186 AARGSSNSYAIKKKDELERVAKSNR 210


>sp|Q9YAU8|RS7_AERPE 30S RIBOSOMAL PROTEIN S7P >gi|7521390|pir||E72570 probable
           ribosomal protein S7 APE1846 - Aeropyrum pernix  (strain
           K1) >gi|5105537|dbj|BAA80850.1| (AP000062) 132aa long
           hypothetical 30S ribosomal protein S7 [Aeropyrum pernix]
           Length = 132
           
 Score =  132 bits (330), Expect = 2e-30
 Identities = 76/148 (51%), Positives = 93/148 (62%), Gaps = 16/148 (10%)

Query: 68  INKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAI 127
           +NK+MR G +                  KK  AY +VK AF II   TG+NPIQVLV AI
Sbjct: 1   MNKLMRPGRN----------------GGKKHLAYNIVKTAFDIIYFETGENPIQVLVKAI 44

Query: 128 ENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAEALAEE 187
           EN+APREDTT + +GGI Y V+VD++P RR+D AL+ IA GA    +       E LAEE
Sbjct: 45  ENSAPREDTTKITYGGITYRVSVDVAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEE 104

Query: 188 IILAANKDPKSYAYSKKLEIERIAESSR 215
           +ILAA  DP+SYA  +K EIERIA SSR
Sbjct: 105 LILAARGDPRSYAIRQKEEIERIALSSR 132


>pir||R3MX7 ribosomal protein S7 - Methanococcus vannielii
           >gi|44785|emb|CAA34090.1| (X15970) S7 ribosomal protein
           (AA 1-146) [Methanococcus vannielii]
           Length = 146
           
 Score =  131 bits (325), Expect = 9e-30
 Identities = 70/161 (43%), Positives = 103/161 (63%), Gaps = 17/161 (10%)

Query: 56  FGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRT 115
           F K  +H+VERL NK+M +  +                  KK +   +++EA  I+E RT
Sbjct: 2   FDKNKMHVVERLANKLMATQVN----------------TGKKNEVLSIIEEALTIVENRT 45

Query: 116 GKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYR 175
            +NPIQV+V A+EN+ PRE+TT + +GGI +  +VD+SP RRLD A RNI+LGAS   ++
Sbjct: 46  KENPIQVVVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNISLGASQGAHK 105

Query: 176 TKMSFAEALAEEIILAANKD-PKSYAYSKKLEIERIAESSR 215
           +K S A+ LA+E++ A+  D  KS+A  KK E ER+A+S+R
Sbjct: 106 SKKSIAQCLADELVAASKADMQKSFAVKKKEEKERVAQSAR 146


>sp|O24111|RS5_NICPL 40S RIBOSOMAL PROTEIN S5 >gi|7440226|pir||T16965 ribosomal protein
           S5 - curled-leaved tobacco >gi|1620982|emb|CAA70084.1|
           (Y08860) 40S ribosomal protein S5 [Nicotiana
           plumbaginifolia]
           Length = 154
           
 Score =  119 bits (296), Expect = 2e-26
 Identities = 71/170 (41%), Positives = 94/170 (54%), Gaps = 16/170 (9%)

Query: 46  HTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVK 105
           HT GR+  K F KA   IVERL N +M  G +                N KK+ A  +VK
Sbjct: 1   HTAGRYQAKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVK 44

Query: 106 EAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNI 165
            A +II   T  NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR+  A+  +
Sbjct: 45  HAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVSQAIYLL 104

Query: 166 ALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
             GA    +R   + AE LA+E+I AA     SYA  KK EIER+A+++R
Sbjct: 105 TTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 154


>pir||S33718 ribosomal protein S7 - Sulfolobus solfataricus (fragment)
           >gi|295944|emb|CAA50032.1| (X70701) ribosomal protein S7
           [Sulfolobus solfataricus]
           Length = 94
           
 Score =  112 bits (277), Expect = 4e-24
 Identities = 57/94 (60%), Positives = 70/94 (73%)

Query: 122 VLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFA 181
           VLV AIEN+APRE+ T +M+GGI Y+VAVD++P RR+D+ALR+IA GA    +       
Sbjct: 1   VLVRAIENSAPREEVTRIMYGGIVYYVAVDVAPQRRIDLALRHIATGAKDSSFNNPKPIE 60

Query: 182 EALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
           E LAEEII AAN DPKS+A  +K EIERIA SSR
Sbjct: 61  EVLAEEIIAAANNDPKSFAIKRKEEIERIALSSR 94


>sp|O15587|RS5_ENTHI 40S RIBOSOMAL PROTEIN S5 >gi|2350900|dbj|BAA21982.1| (AB002732)
           ribosomal protein S5 [Entamoeba histolytica]
           Length = 148
           
 Score =  107 bits (265), Expect = 1e-22
 Identities = 68/162 (41%), Positives = 94/162 (57%), Gaps = 16/162 (9%)

Query: 54  KHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEK 113
           K F K    IVERL+  +M+ G +                + KK+ A  VV+E+F+II  
Sbjct: 3   KPFRKIQCPIVERLVCCMMQHGKN----------------SGKKLLAMRVVEESFEIIHL 46

Query: 114 RTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKC 173
            T KNPIQVLV AI NA+PRED+T V  GG     AVD+SP+RR++ AL  + +G     
Sbjct: 47  LTEKNPIQVLVDAIINASPREDSTRVGTGGNVRGQAVDVSPLRRINHALYLLIMGCRCGA 106

Query: 174 YRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
           +R   S AE LA+EI+ A+     S+A  KK ++ER+A S+R
Sbjct: 107 FRNSKSLAECLADEIVNASKSYTGSFAIMKKEDLERVANSNR 148


>sp|P17291|RS7_THETH 30S RIBOSOMAL PROTEIN S7 >gi|70894|pir||R3TW7 ribosomal protein S7
           - Thermus aquaticus >gi|10835569|pdb|1FJF|G Chain G,
           Structure Of The Thermus Thermophilus 30s Ribosomal
           Subunit >gi|10835591|pdb|1FJG|G Chain G, Structure Of
           The Thermus Thermophilus 30s Ribosomal Subunit In
           Complex With The Antibiotics Streptomycin, Spectinomycin
           And Paromomycin >gi|48275|emb|CAA36419.1| (X52165)
           ribosomal protein S7 (AA 1-156) [Thermus thermophilus]
           Length = 156
           
 Score = 73.7 bits (178), Expect = 2e-12
 Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 25/153 (16%)

Query: 63  IVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQV 122
           +V   INKIMR G                    KK  A  +  +A KII+++TG+ P++V
Sbjct: 22  LVTAFINKIMRDG--------------------KKNLAARIFYDACKIIQEKTGQEPLKV 61

Query: 123 LVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAE 182
              A+EN  PR +  S   GG  Y V +++SP R+  +ALR +   A+    R +   A 
Sbjct: 62  FKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAAN---QRPERRAAV 118

Query: 183 ALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
            +A E++ AA  + K  A  KK ++ER+AE++R
Sbjct: 119 RIAHELMDAA--EGKGGAVKKKEDVERMAEANR 149


>pdb|1RSS|   Ribosomal Protein S7 From Thermus Thermophilus
           Length = 151
           
 Score = 73.7 bits (178), Expect = 2e-12
 Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 25/153 (16%)

Query: 63  IVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQV 122
           +V   INKIMR G                    KK  A  +  +A KII+++TG+ P++V
Sbjct: 17  LVTAFINKIMRDG--------------------KKNLAARIFYDACKIIQEKTGQEPLKV 56

Query: 123 LVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAE 182
              A+EN  PR +  S   GG  Y V +++SP R+  +ALR +   A+    R +   A 
Sbjct: 57  FKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAAN---QRPERRAAV 113

Query: 183 ALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
            +A E++ AA  + K  A  KK ++ER+AE++R
Sbjct: 114 RIAHELMDAA--EGKGGAVKKKEDVERMAEANR 144


>pdb|1FKA|G Chain G, Structure Of Functionally Activated Small Ribosomal
           Subunit At 3.3 A Resolution
           Length = 151
           
 Score = 73.7 bits (178), Expect = 2e-12
 Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 25/153 (16%)

Query: 63  IVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQV 122
           +V   INKIMR G                    KK  A  +  +A KII+++TG+ P++V
Sbjct: 22  LVTAFINKIMRDG--------------------KKNLAARIFYDACKIIQEKTGQEPLKV 61

Query: 123 LVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAE 182
              A+EN  PR +  S   GG  Y V +++SP R+  +ALR +   A+    R +   A 
Sbjct: 62  FKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAAN---QRPERRAAV 118

Query: 183 ALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
            +A E++ AA  + K  A  KK ++ER+AE++R
Sbjct: 119 RIAHELMDAA--EGKGGAVKKKEDVERMAEANR 149


>sp|P22744|RS7_BACST 30S RIBOSOMAL PROTEIN S7 (BS7)
           Length = 156
           
 Score = 71.0 bits (171), Expect = 1e-11
 Identities = 51/156 (32%), Positives = 78/156 (49%), Gaps = 25/156 (16%)

Query: 60  NVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNP 119
           N  +V RLINKIM  G                    KK KA +++  AF II +RTGK+P
Sbjct: 19  NSKLVTRLINKIMIDG--------------------KKSKAQKILYTAFDIIRERTGKDP 58

Query: 120 IQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMS 179
           ++V   A++N  P  +  +   GG  Y V V++ P RR+ + LR +   A     R + +
Sbjct: 59  MEVFEQALKNVMPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYAR---LRNEKT 115

Query: 180 FAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
             E LA EI+ AAN      A  K+ +  ++AE+++
Sbjct: 116 MEERLANEIMDAANN--TGAAVKKREDTHKMAEANK 149


>pdb|1DV4|G Chain G, Partial Structure Of 16s Rna Of The Small Ribosomal
           Subunit From Thermus Thermophilus >gi|6137690|pdb|1QD7|F
           Chain F, Partial Model For 30s Ribosomal Subunit
           Length = 135
           
 Score = 71.0 bits (171), Expect = 1e-11
 Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 25/150 (16%)

Query: 63  IVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQV 122
           +V   INKIMR G                    KK  A  +  +A KII+++TG+ P++V
Sbjct: 11  LVTAFINKIMRDG--------------------KKNLAARIFYDACKIIQEKTGQEPLKV 50

Query: 123 LVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAE 182
              A+EN  PR +  S   GG  Y V +++SP R+  +ALR +   A+    R +   A 
Sbjct: 51  FKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAAN---QRPERRAAV 107

Query: 183 ALAEEIILAANKDPKSYAYSKKLEIERIAE 212
            +A E++ AA  + K  A  KK ++ER+AE
Sbjct: 108 RIAHELMDAA--EGKGGAVKKKEDVERMAE 135


>pdb|1EG0|D Chain D, Fitting Of Components With Known Structure Into An 11.5 A
           Cryo-Em Map Of The E.Coli 70s Ribosome
           Length = 146
           
 Score = 71.0 bits (171), Expect = 1e-11
 Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 25/150 (16%)

Query: 63  IVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQV 122
           +V   INKIMR G                    KK  A  +  +A KII+++TG+ P++V
Sbjct: 22  LVTAFINKIMRDG--------------------KKNLAARIFYDACKIIQEKTGQEPLKV 61

Query: 123 LVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAE 182
              A+EN  PR +  S   GG  Y V +++SP R+  +ALR +   A+    R +   A 
Sbjct: 62  FKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAAN---QRPERRAAV 118

Query: 183 ALAEEIILAANKDPKSYAYSKKLEIERIAE 212
            +A E++ AA  + K  A  KK ++ER+AE
Sbjct: 119 RIAHELMDAA--EGKGGAVKKKEDVERMAE 146


>gi|11426958 ribosomal protein S5 [Homo sapiens]
           Length = 105
           
 Score = 70.6 bits (170), Expect = 1e-11
 Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 19/105 (18%)

Query: 14  EIKVMGRWSTEDVEVRDPSLKPYINLEPRL---LPHTHGRHAKKHFGKANVHIVERLINK 70
           +IK+ G+WST+DV++ D SL+ YI ++ +    LPH+ GR+A K F KA   IVERL N 
Sbjct: 16  DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNS 75

Query: 71  IMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRT 115
           +M  G +                N KK+    +VK AF+II   T
Sbjct: 76  MMMHGRN----------------NGKKLMTVRIVKHAFEIIHLLT 104


>pir||JG0008 ribosomal protein S7 - Bacillus stearothermophilus
           Length = 156
           
 Score = 69.9 bits (168), Expect = 2e-11
 Identities = 51/156 (32%), Positives = 78/156 (49%), Gaps = 25/156 (16%)

Query: 60  NVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNP 119
           N  +V RLINKIM  G                    KK KA +++  AF II +RTGK+P
Sbjct: 19  NSKLVTRLINKIMIDG--------------------KKSKAQKILYTAFDIIRERTGKDP 58

Query: 120 IQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMS 179
           ++V   A++N  P  +  +   GG  Y V V++ P RR+ + LR +   A     R + +
Sbjct: 59  MKVFEQALKNVMPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYAR---LRGEKT 115

Query: 180 FAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
             E LA EI+ AAN      A  K+ +  ++AE+++
Sbjct: 116 MEERLANEIMDAANN--TGAAVKKREDTHKMAEANK 149


>gb|AAC98504.1| (AF091995) ribosomal protein [Plasmodium falciparum]
           Length = 103
           
 Score = 69.1 bits (166), Expect = 4e-11
 Identities = 40/95 (42%), Positives = 51/95 (53%), Gaps = 16/95 (16%)

Query: 45  PHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVV 104
           PHT GR+ KK   KA   IVERL+N +M  G +                N KK+KA  +V
Sbjct: 23  PHTVGRYQKKRXRKALCPIVERLVNSMMMHGRN----------------NGKKLKAIRIV 66

Query: 105 KEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSV 139
             AF+II   TG+NP QV V A +   PRED+T +
Sbjct: 67  AYAFEIIHLMTGENPXQVFVNAXQKGGPREDSTRI 101


>sp|O50564|RS7_THICU 30S RIBOSOMAL PROTEIN S7 >gi|2654447|gb|AAB87732.1| (U78300)
           ribosomal protein S7 [Thiomonas cuprina]
           Length = 156
           
 Score = 68.3 bits (164), Expect = 7e-11
 Identities = 41/123 (33%), Positives = 68/123 (54%), Gaps = 5/123 (4%)

Query: 93  LNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDI 152
           L+ KK  A  +V  AF+ I+ +TGK+PI++   A+ N  P  +  S   GG  Y V V++
Sbjct: 32  LSGKKSIAESIVYGAFEAIQNKTGKDPIEIFSQALSNVKPMVEVKSRRVGGANYQVPVEV 91

Query: 153 SPMRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAE 212
            P RR  +A+R I   A     R + S A+ LA E++ A+  + +  A  ++ E+ R+AE
Sbjct: 92  RPQRRAALAMRWIREAAKK---RGEKSMAQRLANELVEAS--EGRGAAMKRRDEVHRMAE 146

Query: 213 SSR 215
           + +
Sbjct: 147 AHK 149


>sp|P38526|RS7_THEMA 30S RIBOSOMAL PROTEIN S7 >gi|7440231|pir||A72244 ribosomal protein
           S7 - Thermotoga maritima (strain MSB8)
           >gi|4982070|gb|AAD36571.1|AE001799_3 (AE001799)
           ribosomal protein S7 [Thermotoga maritima]
           Length = 155
           
 Score = 67.9 bits (163), Expect = 9e-11
 Identities = 52/153 (33%), Positives = 73/153 (46%), Gaps = 25/153 (16%)

Query: 63  IVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQV 122
           +V +LIN++M  G                    KK  A ++V  AF II ++T K+P++V
Sbjct: 21  LVAKLINRVMWDG--------------------KKTIAQKIVYGAFDIIREKTKKDPLEV 60

Query: 123 LVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAE 182
              A+EN  P  +      GG  Y V +++   RR  +ALR I   A AK  R      E
Sbjct: 61  FRQAVENVKPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKKGR---PMKE 117

Query: 183 ALAEEIILAANKDPKSYAYSKKLEIERIAESSR 215
            LAEEII A N      A  KK +  R+AE++R
Sbjct: 118 KLAEEIIAAYNN--TGTAIKKKEDTHRMAEANR 148


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.134    0.386 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75101864
Number of Sequences: 2977
Number of extensions: 2884431
Number of successful extensions: 6877
Number of sequences better than 1.0e-10: 48
Number of HSP's better than  0.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6781
Number of HSP's gapped (non-prelim): 53
length of query: 215
length of database: 189,106,746
effective HSP length: 56
effective length of query: 159
effective length of database: 155,591,474
effective search space: 24739044366
effective search space used: 24739044366
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)