BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0430 (PAB0430) DE:Hypothetical protein
(406 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75183 hypothetical protein PAB0430 - Pyrococcus abyssi (st... 822 0.0
pir||H71030 hypothetical protein PH1538 - Pyrococcus horikoshii ... 677 0.0
gi|11499267 conserved hypothetical protein [Archaeoglobus fulgid... 243 2e-63
gb|AAG18841.1| (AE004988) Vng0243c [Halobacterium sp. NRC-1] 229 3e-59
sp|Q58008|Y588_METJA HYPOTHETICAL PROTEIN MJ0588 >gi|2128019|pir... 215 6e-55
emb|CAC11360.1| (AL445063) conserved hypothetical protein [Therm... 214 1e-54
pir||H69070 conserved hypothetical protein MTH1529 - Methanobact... 206 5e-52
pir||F70448 conserved hypothetical protein aq_1723 - Aquifex aeo... 153 2e-36
sp|Q58759|YD64_METJA HYPOTHETICAL PROTEIN MJ1364 >gi|2128814|pir... 137 2e-31
gi|6324817 Yor243cp [Saccharomyces cerevisiae] >gi|2501603|sp|Q0... 127 2e-28
gb|AAK40520.1| Conserved hypothetical protein [Sulfolobus solfat... 113 4e-24
emb|CAA22009.1| (AL033502) hypothetical protein [Candida albicans] 109 7e-23
gb|AAF50409.1| (AE003555) CG6745 gene product [Drosophila melano... 97 4e-19
pir||T39858 hypothetical protein SPBC1A4.09 - fission yeast (Sc... 94 3e-18
pir||D75328 conserved hypothetical protein - Deinococcus radiodu... 84 2e-15
sp|Q57261|YGBO_ECOLI 39.1 KDA PROTEIN IN SURE-CYSC INTERGENIC RE... 83 7e-15
pir||H81291 hypothetical protein Cj1457c [imported] - Campylobac... 77 3e-13
sp|Q17426|YQ4B_CAEEL HYPOTHETICAL 64.6 KD PROTEIN B0024.11 IN CH... 75 1e-12
>pir||A75183 hypothetical protein PAB0430 - Pyrococcus abyssi (strain Orsay)
>gi|5458054|emb|CAB49544.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 406
Score = 822 bits (2099), Expect = 0.0
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 MLEELKYLSETPGIGGRIKVKPEDFIVREIIPKSIFKGNCQIYLMKKRNWETIAAIKEIA 60
MLEELKYLSETPGIGGRIKVKPEDFIVREIIPKSIFKGNCQIYLMKKRNWETIAAIKEIA
Sbjct: 1 MLEELKYLSETPGIGGRIKVKPEDFIVREIIPKSIFKGNCQIYLMKKRNWETIAAIKEIA 60
Query: 61 KRIGIHYSEIGFAGTKDRHAVTYQYISVCRDVRKEVEKLKIRDVELKFVGYGRPLKLGFL 120
KRIGIHYSEIGFAGTKDRHAVTYQYISVCRDVRKEVEKLKIRDVELKFVGYGRPLKLGFL
Sbjct: 61 KRIGIHYSEIGFAGTKDRHAVTYQYISVCRDVRKEVEKLKIRDVELKFVGYGRPLKLGFL 120
Query: 121 LGNFFLIRVRDVKRPELIPKIIEELKIKGGFPNYFGIQRFGEKRSVNHIVGKLLLEGKYE 180
LGNFFLIRVRDVKRPELIPKIIEELKIKGGFPNYFGIQRFGEKRSVNHIVGKLLLEGKYE
Sbjct: 121 LGNFFLIRVRDVKRPELIPKIIEELKIKGGFPNYFGIQRFGEKRSVNHIVGKLLLEGKYE 180
Query: 181 EAAEVFLGYPGNGMEGDEARKRFLETKDVDLALEEFPKFLRYERAMLYRYRETRSWKKAF 240
EAAEVFLGYPGNGMEGDEARKRFLETKDVDLALEEFPKFLRYERAMLYRYRETRSWKKAF
Sbjct: 181 EAAEVFLGYPGNGMEGDEARKRFLETKDVDLALEEFPKFLRYERAMLYRYRETRSWKKAF 240
Query: 241 LVLPRPILRIFIHAFQAYLFNLYLSRRIEEGLPLNEAIPGDIVVQVKRGIPLRTRTYRVT 300
LVLPRPILRIFIHAFQAYLFNLYLSRRIEEGLPLNEAIPGDIVVQVKRGIPLRTRTYRVT
Sbjct: 241 LVLPRPILRIFIHAFQAYLFNLYLSRRIEEGLPLNEAIPGDIVVQVKRGIPLRTRTYRVT 300
Query: 301 ETNVDFVNEKIKRGEAMVSGPIFGYSYRKAHGIPGRLEEEILDENEVNVEMFKKLPKPMR 360
ETNVDFVNEKIKRGEAMVSGPIFGYSYRKAHGIPGRLEEEILDENEVNVEMFKKLPKPMR
Sbjct: 301 ETNVDFVNEKIKRGEAMVSGPIFGYSYRKAHGIPGRLEEEILDENEVNVEMFKKLPKPMR 360
Query: 361 EPGGRRELLIKPRKFAYKRKEEEVLFKFFLPKGVYATSVLREITKH 406
EPGGRRELLIKPRKFAYKRKEEEVLFKFFLPKGVYATSVLREITKH
Sbjct: 361 EPGGRRELLIKPRKFAYKRKEEEVLFKFFLPKGVYATSVLREITKH 406
>pir||H71030 hypothetical protein PH1538 - Pyrococcus horikoshii
>gi|3257965|dbj|BAA30648.1| (AP000006) 409aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 409
Score = 677 bits (1727), Expect = 0.0
Identities = 329/405 (81%), Positives = 371/405 (91%), Gaps = 4/405 (0%)
Query: 2 LEELKYLSETPGIGGRIKVKPEDFIVREIIPKSIFKGN-CQIYLMKKRNWETIAAIKEIA 60
L L+YL+ +PGIGG+IKV PEDFIV+E+IPKSIF+G C+IYL+KK+NWET+AAIKEIA
Sbjct: 6 LRNLRYLTSSPGIGGKIKVYPEDFIVKEVIPKSIFRGGRCRIYLLKKKNWETMAAIKEIA 65
Query: 61 KRIGIHYSEIGFAGTKDRHAVTYQYISVCRDVRKEVEKLKIRDVELKFVGYGRPLKLGFL 120
KRIGIHYSEIGFAGTKDRHAVTYQYIS+CR+V ++E + I+DV L+FVGYGRPLKLG L
Sbjct: 66 KRIGIHYSEIGFAGTKDRHAVTYQYISICREV--DLENVAIKDVTLRFVGYGRPLKLGLL 123
Query: 121 LGNFFLIRVRDVKRPELIPKIIEELKIKGGFPNYFGIQRFGEKRSVNHIVGKLLLEGKYE 180
LGNFF IRVRD PEL+P I++E K KGGFPNYFGIQRFGEKRSVNHIVGKLLL GKYE
Sbjct: 124 LGNFFKIRVRDTT-PELLPNILKEAKEKGGFPNYFGIQRFGEKRSVNHIVGKLLLLGKYE 182
Query: 181 EAAEVFLGYPGNGMEGDEARKRFLETKDVDLALEEFPKFLRYERAMLYRYRETRSWKKAF 240
EAAEVFLGYPGNGMEGDEARK+FLETK+VDLALEEFPKFLRYERAMLY+YRET SWK++F
Sbjct: 183 EAAEVFLGYPGNGMEGDEARKKFLETKNVDLALEEFPKFLRYERAMLYKYRETGSWKRSF 242
Query: 241 LVLPRPILRIFIHAFQAYLFNLYLSRRIEEGLPLNEAIPGDIVVQVKRGIPLRTRTYRVT 300
L LPRPILRIFIHAFQ+YLFNLY+SRRIEEG PLNEA+PGDIVVQVK+GIPLR RTYRVT
Sbjct: 243 LALPRPILRIFIHAFQSYLFNLYISRRIEEGFPLNEALPGDIVVQVKKGIPLRDRTYRVT 302
Query: 301 ETNVDFVNEKIKRGEAMVSGPIFGYSYRKAHGIPGRLEEEILDENEVNVEMFKKLPKPMR 360
E+N+DFVNEKI +GEAMVSGPIFGYSYR++HGIPGRLE+EIL+E V++E FK+LPKPMR
Sbjct: 303 ESNLDFVNEKIMQGEAMVSGPIFGYSYRRSHGIPGRLEDEILEEAGVSLENFKRLPKPMR 362
Query: 361 EPGGRRELLIKPRKFAYKRKEEEVLFKFFLPKGVYATSVLREITK 405
EPGGRRELLIKPR F YK + +VLFKFFLPKGVYATSVLREI K
Sbjct: 363 EPGGRRELLIKPRGFRYKTEGRDVLFKFFLPKGVYATSVLREIIK 407
>gi|11499267 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483156|pir||D69459 conserved hypothetical protein
AF1677 - Archaeoglobus fulgidus
>gi|2648873|gb|AAB89568.1| (AE000987) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 411
Score = 243 bits (615), Expect = 2e-63
Identities = 150/406 (36%), Positives = 227/406 (54%), Gaps = 15/406 (3%)
Query: 7 YLSETPGIGGRIKVKPEDFIVREIIPKSIF-KGNCQIYLMKKRNWETIAAIKEIAKRIGI 65
Y++ TPG+GG IK +PEDF V EI ++ +G+ I ++K+NW+T+ + ++ +GI
Sbjct: 10 YITSTPGMGGEIKAEPEDFYVEEIAEFNLSDEGDFLIIRVEKKNWDTLNFARVLSNALGI 69
Query: 66 HYSEIGFAGTKDRHAVTYQYISVCRDVRKEVEKLKIRDVELKFVGYGR-PLKLGFLLGNF 124
I FAGTKD+ A+T QY S+ ++E+E++ ++D +++ +GY R ++LG LLGNF
Sbjct: 70 SQKRISFAGTKDKRALTVQYFSIYGVKKEEIERVNLKDAKIEVIGYARRAIQLGDLLGNF 129
Query: 125 FLIRVRDVKRPELIPKIIEELKIKGGFPNYFGIQRFGEKRSVNHIVGKLLLEGKYEEAAE 184
F IRV + E+ + EL KG PN+FG+QRFG R + H VGKL+L+ YEEA
Sbjct: 130 FRIRVYGCRDGEIFQETRNELMEKGT-PNFFGLQRFGSIRFITHEVGKLILQNNYEEAFW 188
Query: 185 VFLGYPGNGMEGDEARKR---FLETKDVDLALEEFPKFLRYERAMLYRYRETRSWKKAFL 241
V++ P G E +E RK ET+D L L E PK+LRYER +L + RE +S ++A L
Sbjct: 189 VYVAKPFEG-ENEEVRKIREILWETRDAKLGLRELPKYLRYERNLLQKLREGKSEEEALL 247
Query: 242 VLPRPILRIFIHAFQAYLFNLYLSRRIEEGLPLNEAIPGDIVVQVKRGIPLRTRTYRVTE 301
LP+ + +F+HA+Q+Y+FN LS RI + L GD + E
Sbjct: 248 SLPKNLKMMFVHAYQSYIFNRLLSERIRQFGSLKTLEEGDFACYLTFKTRPTFSDCSEVE 307
Query: 302 TNVDFVNEKIKRGEAMVSGPIFGYSYRKAHGIPGRLEEEILDENEVNVEMFKKLPKPMRE 361
N V +K A ++ P+ GY K G R+ + L E+ +++ FK K
Sbjct: 308 VNEARVRFLVKERVASLALPLVGYD-TKLKGW-SRIALDFLSEDNLDLSSFKTKHKEFSS 365
Query: 362 PGGRR--ELLIKPRKFAYKRKEEEVLFKFFLPKGVYATSVLREITK 405
G R + LI+ ++ + F F+LP+G YAT LRE K
Sbjct: 366 SGSYRPADTLIEHTGLSF----TDSTFSFYLPRGCYATVFLREFLK 407
>gb|AAG18841.1| (AE004988) Vng0243c [Halobacterium sp. NRC-1]
Length = 575
Score = 229 bits (579), Expect = 3e-59
Identities = 154/419 (36%), Positives = 217/419 (51%), Gaps = 26/419 (6%)
Query: 7 YLSETPGIGGRIKVKPEDFIVREII-----PKSIFKGNCQIYLMKK--RNWETIAAIKEI 59
Y S++ G GGR++ P DF VRE+ P G+ +++ W+T +E+
Sbjct: 157 YASDSDGTGGRLRDSPADFRVRELEAFDTQPADAPTGDYPWLVVRATLHEWDTNDFAREL 216
Query: 60 AKRIGIHYSEIGFAGTKDRHAVTYQYISVCRDVRKEVEKLKIRDVELKFVGY-GRPLKLG 118
A +G+ + +AGTKDRHAVT Q +V RD+ + +IR+ +++ VG GR L+ G
Sbjct: 217 ANTVGMSRERVRWAGTKDRHAVTTQLFAV-RDL-DAAQVPEIRNADIEVVGRAGRGLEFG 274
Query: 119 FLLGNFFLIRVRDVKRPELIPKIIEELKIKGG----FPNYFGIQRFGEKRSVNHIVGKLL 174
L GN F I VRD PE + +EL GG PNYFG QRFG KR V H VG +
Sbjct: 275 DLAGNAFEIVVRDPDAPERAAAVADELAAFGGGTVGTPNYFGQQRFGSKRPVTHEVGLAI 334
Query: 175 LEGKYEEAAEVFLGYPGNGMEGDEARKR--FLETKDVDLALEEFPKFLRYERAMLYRYRE 232
L +E AA +LG P D R R ET+D AL EFP+ LRYER ML+ +
Sbjct: 335 LRDDWEAAAMAYLGAPTEHEPADSQRAREYVAETRDWTGALAEFPQRLRYERTMLHELAD 394
Query: 233 TRSWKKAFLVLPRPILRIFIHAFQAYLFNLYLSRRIEEGLPLNEAIPGDIV------VQV 286
S++ A P + ++F+HA Q+Y+FN +S R+ GLP E + GD+V
Sbjct: 395 GGSFRDAVETFPSNLQQLFVHAAQSYVFNRIVSERMARGLPFGEPVAGDVVWFADSDADA 454
Query: 287 KRGIPLRTRTYRVTETNVDFVNEKIKRGEAMVSGPIFGYSYRKAHGIPGRLEEEILDENE 346
P R RVT++ VD + +RG A V+ P+ G A G PG + +LD+
Sbjct: 455 AVAQPDAARQQRVTDSRVDVMARHCERGRAFVTAPLVGTDTEFADGDPGEITRGVLDDLG 514
Query: 347 VNVEMFKKLPKPMREPGGRRELLIKPRKFAYKRKEEEVLFKFFLPKGVYATSVLREITK 405
++ F LP G RR +L++P + + F+F LP G YAT VLRE K
Sbjct: 515 LSRADF-DLPGEFDSAGSRRAILLRPDLTV---SHDPLAFEFALPSGSYATVVLREFLK 569
>sp|Q58008|Y588_METJA HYPOTHETICAL PROTEIN MJ0588 >gi|2128019|pir||D64373 hypothetical
protein homolog MJ0588 - Methanococcus jannaschii
>gi|1591296|gb|AAB98579.1| (U67507) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 430
Score = 215 bits (543), Expect = 6e-55
Identities = 151/422 (35%), Positives = 225/422 (52%), Gaps = 67/422 (15%)
Query: 6 KYLSETPGIGGRIKVKPEDFIVREIIPKSI---------------FKGNCQIYLMKKRNW 50
KYL++ GG IK PEDFIV EI P+ I +KGN + ++KRNW
Sbjct: 45 KYLTDAY-TGGIIKKYPEDFIVEEITPEGIILEVGKSIEFKDEENWKGNYIHFTLEKRNW 103
Query: 51 ETIAAIKEIAKRIGIHYSEIGFAGTKDRHAVTYQYISVCRDVRKEVEKLKIRDVELK-FV 109
T+ AI+EIA R+G GFAG KD++AVT Q + +++ K+KI+ + L+ F
Sbjct: 104 TTLDAIREIANRVGKQRKHFGFAGNKDKYAVTTQRVGCFNVKLEDLMKVKIKGIILRDFQ 163
Query: 110 GYGRPLKLGFLLGNFFLIRVRDVKRPELIPKIIEEL-----KIKGGFPNYFGIQRFGEKR 164
R ++LG L GN F IRVR+ PEL K +EE K+K F NY+G+QRFG R
Sbjct: 164 KTNRKIRLGDLWGNRFTIRVRE---PELKGKELEEALNKLCKLKY-FLNYYGVQRFGTTR 219
Query: 165 SVNHIVGKLLLEGKYEEAAEVFLGYPGNGMEGDEARKRF----LETKDVDLALEEFPKFL 220
+ HIVG+ ++E +E A + G P + D+ + + ++ ++ A ++FPK
Sbjct: 220 PITHIVGRFIIERDWEGAFHAYCGTP---LPYDDKKSKLARELVDEENFKEAYKKFPKAF 276
Query: 221 RYERAMLYRYRETRSWKKAFLVLPRPILRIFIHAFQAYLFNLYLSRRIEEGLPLNEAIPG 280
YER M+ Y ET S++KAF++LP + +FI+A+Q+YLFN ++RR E G E + G
Sbjct: 277 FYERRMIKAYIETGSYQKAFMILPPYLRCMFINAYQSYLFNEIINRRFEYGF---EPMEG 333
Query: 281 DIVVQVKRGIPLRTRTYRVTETNVDFVNEKIKRGEAMVSGPIFGYSYRKAHGIPGRLEEE 340
DI++ + + SG +FGY R A GI G +E E
Sbjct: 334 DILI------------------------------DNVPSGALFGYKTRFASGIQGEIERE 363
Query: 341 ILDENEVNVEMFKKLPKPMREPGGRRELLIKPRKFAYKRKEEEVLFKFFLPKGVYATSVL 400
I + ++ E F K+ + G RR ++ K Y +++ + +F L KG YATSVL
Sbjct: 364 IYERENLSPEDF-KIGEFGSFIGDRRAMIGKIYNMKYWIEDDSYVLQFCLKKGNYATSVL 422
Query: 401 RE 402
RE
Sbjct: 423 RE 424
>emb|CAC11360.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 411
Score = 214 bits (540), Expect = 1e-54
Identities = 144/388 (37%), Positives = 212/388 (54%), Gaps = 14/388 (3%)
Query: 17 RIKVKPEDFIVREI--IPKSIFKGNCQIYLMKKRNWETIAAIKEIAKRIGIHYSEIGFAG 74
RIK PEDF V E+ IPKS G I + +W+T ++EIA + I I +AG
Sbjct: 18 RIKENPEDFTVEEVADIPKSD-NGKYTIIKAEIIDWDTNRIVEEIASALRISRKRISYAG 76
Query: 75 TKDRHAVTYQYISVCRDVRKEVEKLKIRDVELKFVGYGRPLKLGFLLGNFFLIRVRDVKR 134
TKD+ A QY + V V K + +F L+LG L N F IR +
Sbjct: 77 TKDKRARKIQYFCINAPVDVSVLAFKGFRIIDRFRS-DHYLRLGDLTANHFRIRFQGAS- 134
Query: 135 PELIPKIIEELKIKGGFPNYFGIQRFGEKRSVNHIVGKLLLEGKYEEAAEVFLGYPGNGM 194
+ I + E++ GGFPNYFG QRFG +R H VG+L++ G+YE+A ++L +
Sbjct: 135 DDYIEQRYEKMMECGGFPNYFGQQRFGSRRRNTHDVGRLIVTGRYEDAVRLYLYDERYDI 194
Query: 195 EGDEARKRFLETKDVDLALEEFPKFLRYERAMLYRYRETRSWKKAFLVLPRPILRIFIHA 254
E + R+ F+ET D + ALE+FP+ LR+ER+++ Y + ++K AF LP+ + +F+HA
Sbjct: 195 E--DYRREFIETLDYNRALEKFPRTLRFERSIIGYYAQHHTFKGAFDALPKNLSIMFVHA 252
Query: 255 FQAYLFNLYLSRRIEEGLPLNEAIPGDIVVQVKRGI-PLRTRTYRVTETNVDFVNEKIKR 313
+Q+YLFN LS RIE+ LN AIPGD V R P ++R V E NVD +N+ I+R
Sbjct: 253 YQSYLFNRMLSLRIEK-YGLNRAIPGDTAFPVDRYFNPDKSRPVEVNEVNVDTINQLIER 311
Query: 314 GEAMVSGPIFGYSYRKAHGIPGRLEEEILDENEVNVEMFKKLPKP-MREPGGRRELLIKP 372
V+ PI G G +E++IL+E V+ MF+ P + G RR + KP
Sbjct: 312 DRLRVALPIIGSEVGPDQSDFGEIEKKILEEEHVDRSMFRNSEYPHLSSTGDRRIVSAKP 371
Query: 373 RKFAYKRKEEEVLFKFFLPKGVYATSVL 400
F+ + F L +G+YAT+++
Sbjct: 372 VDFSVSNS----VMDFTLGRGIYATTLI 395
>pir||H69070 conserved hypothetical protein MTH1529 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622648|gb|AAB86003.1| (AE000913) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 415
Score = 206 bits (518), Expect = 5e-52
Identities = 146/423 (34%), Positives = 226/423 (52%), Gaps = 30/423 (7%)
Query: 1 MLEELKYLSETPGIGGRIKVKPEDFIVREI-IPKSIFKGNCQIYLMKKRNWETIAAIKEI 59
ML Y++ T G GGRI+V DF V EI + + G ++K T+ + +I
Sbjct: 1 MLNAETYVTSTEGTGGRIRVHNRDFEVEEIPLTEPSGSGPNTWIWIEKEGRTTLDVLLDI 60
Query: 60 AKRIGIHYSEIGFAGTKDRHAVTYQYISVCRDVRKEVEKL--KIRDVE-LKFVGYGRPLK 116
A+ + + +GFAG KD+ AVT Q+I V EV+ + +IR+V+ L+ + L+
Sbjct: 61 ARELHLDRRRMGFAGMKDKRAVTRQWICVSNTAPSEVKAIEERIRNVKFLRVTANEKKLR 120
Query: 117 LGFLLGNFFLIRVRDVKRPELIPKI---IEELKIKGGFPNYFGIQRFGEKRSVNHIVGKL 173
+G LLGN F I +RD + E + ++EL+ KG PNY+G QRFG R+ H+VG+
Sbjct: 121 MGQLLGNRFRILIRDTEIDEPLETAKATLQELEDKG-VPNYYGWQRFGSPRANTHLVGRA 179
Query: 174 LLEGKYEEAAEVFLGYP--GNGMEGDEARKRFLETKDVDLALEEFPKFLRYERAMLY-RY 230
L+ G + A + ++G P G EAR+ + + D++ A E P +RYER ML
Sbjct: 180 LVHGDVKGAVDSYIGNPLEGESEIVSEARRAY-DRGDLEEAYELMPSSMRYERMMLRPML 238
Query: 231 RETR-------SWKKAFLVLPRPILRIFIHAFQAYLFNLYLSRRIEEGLPLNEAIPGDIV 283
R+ R S+ +A LP+P+ R+F+HA+Q+YLFN +S R L +N IPGDIV
Sbjct: 239 RDLRRGEFSDESYVRAIHALPKPLKRMFVHAYQSYLFNRAVSER--AALGINTHIPGDIV 296
Query: 284 VQVKRGIPLRTRTYRVTETNVDFVNEKIKRGEAMVSGPIFGYSYRKAHGIPGRLEEEILD 343
+ + I + + + D + E I EA + P++G A G PG +E IL+
Sbjct: 297 IDNDQHI--------IHDADPDELEELILNFEAHPTAPLYGSKVPLASGRPGEIERRILE 348
Query: 344 ENEVNVEMFKKLPKP-MREPGGRRELLIKPRKFAYKRKEEEVLFKFFLPKGVYATSVLRE 402
+ V++E F + P + G RR + + +E + +F +P+G YATSVLRE
Sbjct: 349 DEGVSLEDFNSIKVPKLGSHGMRRAIRFRIWDVDAHESQEGLTVEFSIPRGCYATSVLRE 408
Query: 403 ITK 405
I K
Sbjct: 409 IMK 411
>pir||F70448 conserved hypothetical protein aq_1723 - Aquifex aeolicus
>gi|2984044|gb|AAC07586.1| (AE000753) hypothetical
protein [Aquifex aeolicus]
Length = 385
Score = 153 bits (384), Expect = 2e-36
Identities = 123/399 (30%), Positives = 198/399 (48%), Gaps = 36/399 (9%)
Query: 17 RIKVKPEDFIVREIIPKSIF-KGNCQIYLMKKRNWETIAAIKEIAKRIGIHYSEIGFAGT 75
RIK KPE+F V+EI + KG +L+KK++ T+ A++ I+ R GI IGFAG
Sbjct: 4 RIKEKPEEFYVKEIKKLDLKEKGQYAYFLLKKKDMTTLDAVRHISHRFGIPLKNIGFAGL 63
Query: 76 KDRHAVTYQYISVCRDVRKE----VEKLKIRDVELKFVGYG-RPLKLGFLLGNFFLIRVR 130
KD+ AVT QYISV +D+ +E ++ + ++ELKF+G+ + L+LG + GN+F + VR
Sbjct: 64 KDKKAVTEQYISV-KDLNEEKIRKMDGYRTENLELKFLGFSDKGLELGEIEGNYFEVVVR 122
Query: 131 DVKR--PELIPKIIEELKIKGGFPNYFGIQRFGEKRSVNHIVGKLLLEGKYEEAAEVFLG 188
V + + P+ ++EL G NYFG QRFG + + K LL +YEEA + +L
Sbjct: 123 GVTKYHRRVFPR-MKELVENYGCENYFGEQRFGSVKHAEEFIVKYLLRHEYEEAMKEYL- 180
Query: 189 YPGNGMEGDEARKRFLET--KDVDLALEEFPKFLRYERAMLYRYRETRSWKKAFLVLPRP 246
GD+ KR L +D D L PK + E ++ R S+K AF+VLP+
Sbjct: 181 ----TSLGDKRLKRLLRKAWRDWDRFLSLMPKGAKPELEVVKALRRGESFKNAFMVLPKN 236
Query: 247 ILRIFIHAFQAYLFNLYLSRRIEEGLPLNEAIPGDIVVQVKRGIPLRTRTYRVTETNVDF 306
I +F+ A+Q+YL+N YL + L + P +
Sbjct: 237 IRLMFVFAYQSYLWNRYLYTFVVRYLKYCKT-------------PFLKWELAFFNDMSEV 283
Query: 307 VNEKIKRGEAMVSGPIFGYSYRKAHGIPGRLEEEILDENEVNVEMF--KKLPKPMREPGG 364
+ E+IK E P G Y+ + + +E+L + + +M +++ + G
Sbjct: 284 IWEEIKDLEI----PYLGVEYKPRNKKAEIVMKEVLQDEGITPKMLMAERIGIKLFSDGV 339
Query: 365 RRELLIKPRKFAYKRKEEEVLFKFFLPKGVYATSVLREI 403
R+ + ++ + F LP G YAT +LR++
Sbjct: 340 RKAFFKPQGLKVIEERKNSLKLSFTLPPGSYATILLRKL 378
>sp|Q58759|YD64_METJA HYPOTHETICAL PROTEIN MJ1364 >gi|2128814|pir||C64470 hypothetical
protein MJ1364 - Methanococcus jannaschii
>gi|1592008|gb|AAB99372.1| (U67576) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 487
Score = 137 bits (342), Expect = 2e-31
Identities = 119/400 (29%), Positives = 199/400 (49%), Gaps = 39/400 (9%)
Query: 17 RIKVKPEDFIVREIIPKSIFKGN-CQIYLMKKRNWETIAAIKEIAKRIGIHYSEIGFAGT 75
++++KPEDFIV EII + G+ C +Y + KRN E++ A IAK+ I +IG+ G
Sbjct: 93 KLRMKPEDFIVEEIIDFNKIAGDRCYLYKLTKRNIESLKAFSYIAKKFKIPLKDIGYCGL 152
Query: 76 KDRHAVTYQYISVCRDVRKEVEKLKIRD--VELKFVGYGRPLKLGFLLGNFFLIRVRDVK 133
KDRHA+T QYIS + K+ KL + + ++L+ +G + L LG L GN F I VR +K
Sbjct: 153 KDRHALTTQYIS----IPKKYGKLSLDEPNLKLELIGESKFLLLGDLEGNRFTITVRGLK 208
Query: 134 RPELIPKIIEELK-IKGGFPNYFGIQRFGEKRSVNHIVGKLLLEGKYEEAAEVFL-GYPG 191
+ E IPKI E LK ++ G PNYF QRFG + K +++G YEEA ++ L Y
Sbjct: 209 K-EDIPKIKENLKYLEFGAPNYFDSQRFGSVFD-KKFIAKEVIKGNYEEAVKILLTKYKK 266
Query: 192 NGMEGDEARKRFLETK--DVDLALEEFPKFLRYERA---MLYRYRETRSWKKAFLVLPRP 246
+ + + KRF++ D D E + R M+ +++ +KKA +
Sbjct: 267 SEKKLIKDLKRFIDKNWGDWDKIWEYIKENNIKSRLYVNMVKELKKSNDYKKALSYVDDR 326
Query: 247 ILRIFIHAFQAYLFNLYLSRRIEEGLPLNEAI-----PGDIVVQVKRGIP----LRTRTY 297
+ +IF+ A+Q+YL+N + + + +P + + G ++ K L+ + +
Sbjct: 327 LKKIFVAAYQSYLWNECVKELLRKYVPEEDRVYYEYECGTLMFYKKMDEEVFNILKDKKF 386
Query: 298 RVTETNVDF------VNEKIKRGEAMVSGPI--------FGYSYRKAHGIPGRLEEEILD 343
++++ + E+I + E + + F YS RK IP L+ +
Sbjct: 387 PTIAPDIEYSGEEKEIIEEILKREGLTMEELNNIGELGKFIYSERKILSIPKNLKIGEFE 446
Query: 344 ENEVNVEMFKKLPKPMREPGGRRELLIKPRKFAYKRKEEE 383
E+E+N +K E G ++IK K K+ +
Sbjct: 447 EDELNKGKYKITLSYELEKGSYATIIIKRAFLGVKTKKRK 486
>gi|6324817 Yor243cp [Saccharomyces cerevisiae]
>gi|2501603|sp|Q08647|YO7T_YEAST HYPOTHETICAL 77.0 KDA
PROTEIN IN HES1-SEC63 INTERGENIC REGION
>gi|2132095|pir||S67136 hypothetical protein YOR243c -
yeast (Saccharomyces cerevisiae)
>gi|1420554|emb|CAA99464.1| (Z75151) ORF YOR243c
[Saccharomyces cerevisiae]
Length = 676
Score = 127 bits (316), Expect = 2e-28
Identities = 107/378 (28%), Positives = 180/378 (47%), Gaps = 52/378 (13%)
Query: 43 YLMKKRNWETIAAIKEIAKRIGIHYSEIGFAGTKDRHAVTYQYISVCRDVRKEVEKLKIR 102
+ + K N +T+ A+ I K + + I +AGTKDR AVT Q +S+ + +++L
Sbjct: 222 FTLHKENKDTMEAVNVITKLLRVPSRVIRYAGTKDRRAVTCQRVSISKI---GLDRLNAL 278
Query: 103 DVELKFVGYGR------PLKLGFLLGNFFLIRVRDVKR-------PELIPKIIEELKIKG 149
+ LK + G L LG L GN F++ +RDV E++ + L +
Sbjct: 279 NRTLKGMIIGNYNFSDASLNLGDLKGNEFVVVIRDVTTGNSEVSLEEIVSNGCKSLS-EN 337
Query: 150 GFPNYFGIQRFGEKRSVNHIVGKLLLEGKYEEAAEVFLGYPGNGM-EGDEARKRFLETKD 208
GF NYFG+QRFG H +G+ LL +++AAE+ L N + + EARK + ETKD
Sbjct: 338 GFINYFGMQRFGTFSISTHTIGRELLLSNWKKAAELILSDQDNVLPKSKEARKIWAETKD 397
Query: 209 VDLALEEFPKFLRYERAMLYRYRETR----------SWKKAFLVLPRPILRIFIHAFQAY 258
LAL++ P+ E A+LY R ++ A + +PR + +++HA+Q+Y
Sbjct: 398 AALALKQMPRQCLAENALLYSLSNQRKEEDGTYSENAYYTAIMKIPRNLRTMYVHAYQSY 457
Query: 259 LFNLYLSRRIE-EGLPLNEAIPGDIVVQVKRGIPLRT-----------------RTYRVT 300
++N S+RIE GL L + GD+V+ PL + R VT
Sbjct: 458 VWNSIASKRIELHGLKL---VVGDLVIDTSEKSPLISGIDDEDFDEDVREAQFIRAKAVT 514
Query: 301 ETNVDFVNEKIKRGEAMVSGPIFGYSYRKAHGIPGRLEEEILDENEVNVEMFKKLPKPMR 360
+ ++D V K + ++ P F Y + +L +IL + ++ ++ +
Sbjct: 515 QEDIDSV--KYTMEDVVLPSPGFDVLYPSNEELK-QLYVDILKADNMDPFNMRRKVRDFS 571
Query: 361 EPGGRRELLIKPRKFAYK 378
G R ++ KP+ Y+
Sbjct: 572 LAGSYRTVIQKPKSLEYR 589
>gb|AAK40520.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 377
Score = 113 bits (280), Expect = 4e-24
Identities = 87/285 (30%), Positives = 146/285 (50%), Gaps = 19/285 (6%)
Query: 4 ELKYLSETPGIGGRIKVKPEDFIVREIIP-------KSIFKGNCQIYLMKKRNWETIAAI 56
E Y + + G I+ +P F V E I K KG ++L+ K + +AI
Sbjct: 13 EKYYYEDWNELDGTIE-RPNGFKVIEEIDFKPAQDWKGETKGKYAVFLLTKWGIDHFSAI 71
Query: 57 KEIAKRIGIHYSEIGFAGTKDRHAVTYQYISVCRDVRKE-VEKLKIRDVELKFVGYGRPL 115
E+ K + +S++ + G KD +A+T Q + + + ++E +EK + R LKF+G+
Sbjct: 72 SEVQK---VLHSKVNYIGIKDANAITSQLVYIPLNEKQELIEKYQSRSFILKFLGFSSK- 127
Query: 116 KLGFLLGNFFLIRVRDVKRPELIPKIIEELKIKGGFPNYFGIQRFGEKRSVNHIVGKLLL 175
KL GN F I + + +++ + IE++K P + G QRFG +R + H++GK LL
Sbjct: 128 KLNHT-GNIFEISL-SISDFDIVIERIEQIKKNPYLPAFIGYQRFGTRRPITHLIGKYLL 185
Query: 176 EGKYEEAAEVFLGYP--GNGMEGDEARKRFLETKDVDLALEEFPKFLRYERAMLYRYRET 233
+E+A + L YP E + RK +E D A+ P + E+ +L Y
Sbjct: 186 RRDWEKAFYLILTYPFLSESKETIDIRKLIME-GDFKEAVRSIPSKFKQEKLLLKNYMRF 244
Query: 234 RSWKKAFLVLPRPILRIFIHAFQAYLFNLYLSRRIEEGLPLNEAI 278
S+ A PI +++ A+Q+YLFNLYLSR+++E LN+ +
Sbjct: 245 NSYYLALKSSFIPI-SLYLDAYQSYLFNLYLSRKLDEYKNLNDKV 288
>emb|CAA22009.1| (AL033502) hypothetical protein [Candida albicans]
Length = 747
Score = 109 bits (269), Expect = 7e-23
Identities = 90/282 (31%), Positives = 133/282 (46%), Gaps = 43/282 (15%)
Query: 43 YLMKKRNWETIAAIKEIAKRIGIHYSEIGFAGTKDRHAVTYQYISVCRDVRKEVEKL--- 99
+ + K+N +T+ I K + I++ I +AGTKDR T Q S+ V L
Sbjct: 270 FTVYKQNRDTMEVANNIGKLLRINHKFINYAGTKDRRGATCQRFSINHGKVLRVNALNKS 329
Query: 100 KIRDVELKFVGY-GRPLKLGFLLGNFFLIRVRDVK-----------RPE--------LIP 139
K L Y PLKLG L GN F I +RD+K +P+ ++
Sbjct: 330 KRNGFTLGSFSYEDHPLKLGDLKGNEFTIVIRDIKPHHQQQQQQEQQPQDQSQSIESIVT 389
Query: 140 KIIEELKIKGGFPNYFGIQRFGEKRSVNHIVGKLLLEGKYEEAAEVFLGYPGNGMEGD-E 198
E L+ K GF NYFG+QRFG H GK +L ++E E+ L + G E
Sbjct: 390 SCFESLQ-KNGFINYFGMQRFGSFSISTHEFGKFILNENWQEFVELLLSDQESVAPGSIE 448
Query: 199 ARKRFLETKDVDLALEEFPKFLRYERAMLYRYR--------------ETRSWKKAFLVLP 244
ARK + +T+D L L + P + E A+L + + S+ KA +P
Sbjct: 449 ARKIWKQTRDPKLTLNKLPHYFVAETAVLRVLQNESPQQKDDNNTVYSSNSYLKAIQAIP 508
Query: 245 RPILRIFIHAFQAYLFNLYLSRRIE-EGLPLNEAIPGDIVVQ 285
+ + ++ HA+QAY++NL S+RIE GL L I GD+V +
Sbjct: 509 KNLRMMYGHAYQAYIWNLVASKRIELYGLNL---IEGDLVFE 547
>gb|AAF50409.1| (AE003555) CG6745 gene product [Drosophila melanogaster]
Length = 734
Score = 96.7 bits (237), Expect = 4e-19
Identities = 89/290 (30%), Positives = 142/290 (48%), Gaps = 31/290 (10%)
Query: 5 LKYLSETPGIGGRIKVKPEDFIVREIIPKSIFKGNCQIYLMKKRNWETIAAIKEIAKRIG 64
+K PG G + P D++ +L+ K N T +A R+
Sbjct: 217 IKVFKPKPGRGDKRWSFPADYVT---------------FLVHKTNLVTSDVASTLAARLN 261
Query: 65 IHYSEIGFAGTKDRHAVTYQYISVCRDVRKE--VEKLKIRDVELKFVGY-GRPLKLGFLL 121
+ S++ ++G KD+ A T Q SV R + V R+V + G+ LKLG L
Sbjct: 262 LRPSQVNYSGIKDKRAKTTQKFSVKRRTPESILVAARSQRNVHIGNFGFESNTLKLGDLQ 321
Query: 122 GNFFLIRVRDV--KRPELIPKIIEELKIKGGFPNYFGIQRFGEKRSV-NHIVGKLLLEGK 178
GN F I +R + ++ E I + ++ LK +G F NY+G+QRFG SV + VG LL+
Sbjct: 322 GNRFRIALRHIAKEKREEIEQALQSLKERG-FINYYGLQRFGNSASVPTYEVGVALLKHD 380
Query: 179 YEEAAEVFLGYPGNGMEG-DEARKRFLETKDVDLALEEFPKFLRYERAML---YRYRETR 234
Y+ A E+ L + +E R+ + + +D A + E+ +L R+ E+
Sbjct: 381 YKLACELILKPRDSDVEFLRPIREEWWKNRDSAAAAAQIYGEKFIEKKLLDGLARFGES- 439
Query: 235 SWKKAFLVLPRPILRIFIHAFQAYLFNLYLSRRIEE-GLPLNEAIPGDIV 283
+ A +PR +L ++ HA+Q+ +FN SRRI+E GL L IPGD+V
Sbjct: 440 DYSSALRQIPRNMLMLYPHAYQSLIFNRIASRRIKEFGLKL---IPGDLV 486
>pir||T39858 hypothetical protein SPBC1A4.09 - fission yeast
(Schizosaccharomyces pombe) >gi|3393022|emb|CAA20114.1|
(AL031174) hypothetical protein [Schizosaccharomyces
pombe]
Length = 680
Score = 94.0 bits (230), Expect = 3e-18
Identities = 101/425 (23%), Positives = 181/425 (41%), Gaps = 70/425 (16%)
Query: 40 CQIYLMKKRNWETIAAIKEIAKRIGIHYSEIGFAGTKDRHAVTYQYISVCRDVRKEVEKL 99
C +L K+ N +++ + +IA+ + + + AGTKDR VT Q +++ + +L
Sbjct: 241 CHFHLYKE-NRDSMDCLGKIARLLKVPTRTLSIAGTKDRRGVTCQRVAIHHVRASRLAQL 299
Query: 100 KIRDVELKFVGY--------GRPLKLGFLLGNFFLIRVRDVKRPELIPKIIEELKI--KG 149
++ G+ L+LG L GN F I VR+V P+ K++E L +
Sbjct: 300 NSGSLKNSTYGFLLGNYSYKNSNLRLGDLKGNEFHIVVRNVITPK--EKVVEALNSLKEH 357
Query: 150 GFPNYFGIQRFGEKRSVNHIVGKLLLEGKYEEAAEVFLG-YPGNGMEGDEARKRFLETKD 208
GF NYFG+QRFG H +G LL+ ++ A ++ L P + EA + T D
Sbjct: 358 GFINYFGLQRFGTSSVGTHTIGVRLLQSDWKGAVDLILSPRPEHTGSVKEAIDLWHSTHD 417
Query: 209 VDLALEEFPKFLRYERAMLYRYRET---RSWKKAFLVLPRPILRIFIHAFQAYLFNLYLS 265
+ +L P+ + E ++L + + + AF +PR + I+ HA+Q+Y++N S
Sbjct: 418 AEASLRILPRRMIAESSILETWSRSGNQTDYLGAFQRIPRHLRSIYPHAYQSYVWNRVAS 477
Query: 266 RRIEEGLPLNEAIPGDIVVQVK-RGIPLRTRTYRVTETNVDFVNEKIKRGEAMVSGPI-- 322
RI+ + + GD+V + G+ ++ + + + E + + + PI
Sbjct: 478 WRIKN--LGDRPVVGDLVYSTESNGLSQKS---PIVDPEAPDLLEDLPVSSKLSARPIEE 532
Query: 323 ---FGYS-YRKAHGIPGR-----------LEEEILDENEVNVEMFKKLPKPMREPGGRRE 367
+S Y +PGR + + +++E ++ + + + PG R+
Sbjct: 533 DEVNNFSIYDIVLPLPGRNVIYPKNETFDIYKSVMNEASLDPLNMSRKDRELSLPGDYRK 592
Query: 368 LLIKPRKFAYK------------------------------RKEEEVLFKFFLPKGVYAT 397
LL++P + K V KF LP YAT
Sbjct: 593 LLVRPENMEFNFIKYDNMEQQLILTDKDRLENRSISVSSEVGKHTAVTLKFVLPSSAYAT 652
Query: 398 SVLRE 402
LRE
Sbjct: 653 MALRE 657
>pir||D75328 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6459780|gb|AAF11542.1|AE002037_3 (AE002037)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 353
Score = 84.3 bits (205), Expect = 2e-15
Identities = 60/174 (34%), Positives = 96/174 (54%), Gaps = 7/174 (4%)
Query: 11 TPGIGGRIKVKPEDFIVREIIPKSIFKGNCQ-IYL-MKKRNWETIAAIKEIAKRIGIHYS 68
+PG GGR++ +P DF V+E+ P + G+ + +YL ++K T ++E+ ++G+
Sbjct: 11 SPGTGGRLRAEPADFQVQEV-PAYLPGGSGEYLYLHVEKTRHTTAHVVRELCAQLGVRDR 69
Query: 69 EIGFAGTKDRHAVTYQYISVCRDVRKEVEKLKIRDVE-LKFVGYGRPLKLGFLLGNFFLI 127
++G AG KDRHAVT Q++S+ V + + V L+ + L +G L GN F++
Sbjct: 70 DVGVAGLKDRHAVTTQWLSLPAKVEPRMGDFSLPGVRILETSRHTNKLGMGHLHGNRFVV 129
Query: 128 RVRDVK-RPELIPKIIEELKIKGGFPNYFGIQRFGEKRSVNHIVGKLLLEGKYE 180
RVR E + + L +GG PNYFG QRFG +N G +L G+ E
Sbjct: 130 RVRGAAGMAEQAGETLATL-AQGGVPNYFGPQRFG-LGGLNAEEGLRVLRGESE 181
>sp|Q57261|YGBO_ECOLI 39.1 KDA PROTEIN IN SURE-CYSC INTERGENIC REGION
>gi|2121179|pir||I69731 hypothetical protein b2745 -
Escherichia coli >gi|882638|gb|AAA69255.1| (U29579) was
ORF_f292 and ORF_f255 before splice; ORF_f349
[Escherichia coli] >gi|1036738|gb|AAA79838.1| (L07942)
ORF1 [Escherichia coli] >gi|1789102|gb|AAC75787.1|
(AE000358) putative hydrogenase subunit [Escherichia
coli K12]
Length = 349
Score = 82.7 bits (201), Expect = 7e-15
Identities = 57/164 (34%), Positives = 87/164 (52%), Gaps = 7/164 (4%)
Query: 3 EELKYLSETPGIGGRIKVKPEDFIVREIIP-KSIFKGNCQIYLMKKRNWETIAAIKEIAK 61
+ L YL P G +K PEDF+V E + + +G + + K T +AK
Sbjct: 5 DNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAK 64
Query: 62 RIGIHYSEIGFAGTKDRHAVTYQYISVCRDVRKEVEKLKIRDVE----LKFVGYGRPLKL 117
+ IH E+ FAG KD+HAVT Q++ R KE+ L +E L++ + R L+L
Sbjct: 65 FLKIHAREVSFAGQKDKHAVTEQWL-CARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRL 123
Query: 118 GFLLGNFFLIRVRDVKRPELIPKIIEELKIKGGFPNYFGIQRFG 161
G L GN F + +R+V + + + + ++ +K G PNYFG QRFG
Sbjct: 124 GALKGNAFTLVLREVSNRDDVEQRLIDICVK-GVPNYFGAQRFG 166
>pir||H81291 hypothetical protein Cj1457c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6968885|emb|CAB73880.1|
(AL139078) ypothetical protein Cj1457c [Campylobacter
jejuni]
Length = 372
Score = 77.3 bits (187), Expect = 3e-13
Identities = 98/393 (24%), Positives = 167/393 (41%), Gaps = 69/393 (17%)
Query: 23 EDFIVREIIPKSIF--KGNCQIYLMKKRNWETIAAIKEIAKRIGIHYSEIGFAGTKDRHA 80
+DF+VRE P F KG I + K++ T A+K +++ G+ + G+AG KD+
Sbjct: 30 DDFVVRER-PLYEFSGKGEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQG 88
Query: 81 VTYQYISVCRDVRKEVE-----KLKIRDVELKFVGYGRPLKLGFLLGNFFLIRVRDVKRP 135
T+QY+S+ + + KLKI L+ + L++G L GN F IR++ V
Sbjct: 89 STFQYLSMPKKFESFLSNFSHPKLKI----LEIFTHENKLRIGHLKGNSFFIRLKKVLPS 144
Query: 136 ELIPKIIEELK--IKGGFPNYFGIQRFGEKRSVNHIVGKLLLEGKYEEAAEVFLGYPGNG 193
+ + K+ + L K GF NYFG QRFG+ Y+E E+ G
Sbjct: 145 DAL-KLEQALMNLDKQGFANYFGYQRFGK------------FGDNYKEGLEILRG----- 186
Query: 194 MEGDEARKRFLETKDVDLALEEFPKFLRY--ERAMLYRYRETRSWKKAFLVLPRPILRIF 251
+ + ++ K+ ++ + F RY +R L + S K+
Sbjct: 187 -----KKMKNVKMKEFLISAFQSELFNRYLSKRVELSHFANDFSEKE------------- 228
Query: 252 IHAFQAYLFNLYLSRRIEEGLPLNEAIPGDIVVQVKRGIPLRTRTYRVTETNVDFVNEKI 311
Q Y + ++ +++ + + G+++ G + + + + + K
Sbjct: 229 --LIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFG-----KCFLCEDLSAELGRFKA 281
Query: 312 KRGEAMVSGPIFG-YSYRKAHGIPGRLEEEILDENEVNVEMFKKLPKPMREPGGRRELLI 370
+ AM G + G +Y G+ LE EI + +E K+ R G E L
Sbjct: 282 RDISAM--GLLIGAKAYETGEGLALNLENEIFKD---TLEFKAKMQGSRRFMWGYLEEL- 335
Query: 371 KPRKFAYKRKEEEVLFKFFLPKGVYATSVLREI 403
K+ Y ++ +FFL KG YAT VL EI
Sbjct: 336 ---KWRYDEEKAHFCIEFFLQKGSYATVVLEEI 365
>sp|Q17426|YQ4B_CAEEL HYPOTHETICAL 64.6 KD PROTEIN B0024.11 IN CHROMOSOME V
>gi|7494706|pir||T18646 hypothetical protein B0024.11 -
Caenorhabditis elegans >gi|3873676|emb|CAA94883.1|
(Z71178) Weak similarity with Haemophilus Influenzae
protein HI0701 (Swiss Prot accession number P44039),
contains similarity to Pfam domain: PF01142
(Uncharacterized protein family UPF0024), Score=810.7,
E-value=1.8e-240, N=1~cDNA EST yk256g10.3 comes>
Length = 577
Score = 75.3 bits (182), Expect = 1e-12
Identities = 68/238 (28%), Positives = 117/238 (48%), Gaps = 16/238 (6%)
Query: 47 KRNWETIAAIKEIAKRIGIHYSEIGFAGTKDRHAVTYQYISVCRDVRKEVEKL--KIRDV 104
K N ET A + IAK + + + I G KD+ AVT Q +SV + + + L K+R +
Sbjct: 158 KENKETSFACQLIAKFLNVGPNNIRTHGIKDKRAVTSQRVSVTKVHERTILDLNSKLRGI 217
Query: 105 ELKFVGY-GRPLKLGFLLGNFFLIRVRDVK--RPELIPKIIEELKIKGGFPNYFGIQRFG 161
+ Y P+++G GN F I +R + +L+ + +E + GF NYFG QRFG
Sbjct: 218 RVFGCEYKDDPVQMGAHWGNRFSIVLRSLPDDSEQLLHQRLETFQ-NTGFINYFGTQRFG 276
Query: 162 EKRSVNHIVGKLLLEGKYEEAAEVFL-----GYPGNGMEGDEARKRFLETKDVDLA---L 213
+ S +G +++ +E+A ++ + + G G G A K F +T D A L
Sbjct: 277 SRSSTTAEIGLAIVKRDWEKAVKMIMTNAMPDHLGYGSVG-YAAKCFSQTGDARKAFSKL 335
Query: 214 EEFPKFLRYERAMLYRYRETRSWKKAFL-VLPRPILRIFIHAFQAYLFNLYLSRRIEE 270
+ F E +L + +W+ +P +++HA+Q+ ++N SRR++E
Sbjct: 336 KGAQAFATVEGNILKCLSKGGTWQNCITEAIPIQSRSLYVHAYQSLIWNKVASRRVKE 393
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.145 0.422
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157153350
Number of Sequences: 2977
Number of extensions: 7126578
Number of successful extensions: 19811
Number of sequences better than 1.0e-10: 18
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 19732
Number of HSP's gapped (non-prelim): 34
length of query: 406
length of database: 189,106,746
effective HSP length: 54
effective length of query: 352
effective length of database: 156,788,448
effective search space: 55189533696
effective search space used: 55189533696
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)