BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0431 (PAB0431) DE:Hypothetical protein
(417 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75183 hypothetical protein PAB0431 - Pyrococcus abyssi (st... 845 0.0
pir||E71030 hypothetical protein PH1535 - Pyrococcus horikoshii ... 714 0.0
pir||D69040 conserved hypothetical protein MTH1305 - Methanobact... 388 e-107
sp|Q60348|Y043_METJA HYPOTHETICAL PROTEIN MJ0043 >gi|2127759|pir... 278 7e-74
sp|P38423|YQXK_BACSU HYPOTHETICAL 32.2 KD PROTEIN IN BMRU-ANSR I... 144 2e-33
dbj|BAB05244.1| (AP001512) unknown conserved protein [Bacillus h... 143 3e-33
pir||A40617 orf2 5' of ansR - Bacillus subtilis (fragment) 123 3e-27
>pir||D75183 hypothetical protein PAB0431 - Pyrococcus abyssi (strain Orsay)
>gi|5458057|emb|CAB49547.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 417
Score = 845 bits (2159), Expect = 0.0
Identities = 417/417 (100%), Positives = 417/417 (100%)
Query: 1 MLVDGDLHIHSHYSKAVSKLMIFPVIAENAKLKGLGLVGSGDILNPHWEEELLKWEKVDD 60
MLVDGDLHIHSHYSKAVSKLMIFPVIAENAKLKGLGLVGSGDILNPHWEEELLKWEKVDD
Sbjct: 1 MLVDGDLHIHSHYSKAVSKLMIFPVIAENAKLKGLGLVGSGDILNPHWEEELLKWEKVDD 60
Query: 61 GTFEVKGVRFLLTAEVEDNRRVHHLLIFPSLSQVHELREILRKYSQDIESEGRPHINLSA 120
GTFEVKGVRFLLTAEVEDNRRVHHLLIFPSLSQVHELREILRKYSQDIESEGRPHINLSA
Sbjct: 61 GTFEVKGVRFLLTAEVEDNRRVHHLLIFPSLSQVHELREILRKYSQDIESEGRPHINLSA 120
Query: 121 EELAELCNELGVLIGPAHAFTPWTALYKEYNSLKEAYGNARIDFLELGLSADSEMADMIR 180
EELAELCNELGVLIGPAHAFTPWTALYKEYNSLKEAYGNARIDFLELGLSADSEMADMIR
Sbjct: 121 EELAELCNELGVLIGPAHAFTPWTALYKEYNSLKEAYGNARIDFLELGLSADSEMADMIR 180
Query: 181 AHHKLTYLSNSDAHSPQPHRLGREFNRFDVKEVTFEEVRKAILKRGGKRIVLNAGLDPRL 240
AHHKLTYLSNSDAHSPQPHRLGREFNRFDVKEVTFEEVRKAILKRGGKRIVLNAGLDPRL
Sbjct: 181 AHHKLTYLSNSDAHSPQPHRLGREFNRFDVKEVTFEEVRKAILKRGGKRIVLNAGLDPRL 240
Query: 241 GKYHLTACSRCYTKYSLQDAISLRWRCPKCGGMIKKGVRDRILELADTNERPRDRPPYLR 300
GKYHLTACSRCYTKYSLQDAISLRWRCPKCGGMIKKGVRDRILELADTNERPRDRPPYLR
Sbjct: 241 GKYHLTACSRCYTKYSLQDAISLRWRCPKCGGMIKKGVRDRILELADTNERPRDRPPYLR 300
Query: 301 LAPLAEIISQVLGKGVETKAVKVVWERFLREFRSEIKVLVDVPVDALARVHEEVAKAIWA 360
LAPLAEIISQVLGKGVETKAVKVVWERFLREFRSEIKVLVDVPVDALARVHEEVAKAIWA
Sbjct: 301 LAPLAEIISQVLGKGVETKAVKVVWERFLREFRSEIKVLVDVPVDALARVHEEVAKAIWA 360
Query: 361 YRNGKLIIIPGGGGKYGEIRIPEEVLKARIEDLESVELRVEVEEIKPKQLNLMEFLK 417
YRNGKLIIIPGGGGKYGEIRIPEEVLKARIEDLESVELRVEVEEIKPKQLNLMEFLK
Sbjct: 361 YRNGKLIIIPGGGGKYGEIRIPEEVLKARIEDLESVELRVEVEEIKPKQLNLMEFLK 417
>pir||E71030 hypothetical protein PH1535 - Pyrococcus horikoshii
>gi|3257962|dbj|BAA30645.1| (AP000006) 418aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 418
Score = 714 bits (1824), Expect = 0.0
Identities = 335/418 (80%), Positives = 388/418 (92%), Gaps = 1/418 (0%)
Query: 1 MLVDGDLHIHSHYSKAVSKLMIFPVIAENAKLKGLGLVGSGDILNPHWEEELLKW-EKVD 59
M VDGDLHIHSHYSKAVSKLM+FP+IAENAKLKGLGLVGSGDILNP WEEELLK+ EKVD
Sbjct: 1 MFVDGDLHIHSHYSKAVSKLMVFPIIAENAKLKGLGLVGSGDILNPKWEEELLKYGEKVD 60
Query: 60 DGTFEVKGVRFLLTAEVEDNRRVHHLLIFPSLSQVHELREILRKYSQDIESEGRPHINLS 119
+GTFE+KGVRFLLTAEVED+RRVHHLLIFPS+ QVHELREIL KYSQD+E EGRPHI+LS
Sbjct: 61 EGTFEIKGVRFLLTAEVEDDRRVHHLLIFPSIEQVHELREILTKYSQDLEVEGRPHISLS 120
Query: 120 AEELAELCNELGVLIGPAHAFTPWTALYKEYNSLKEAYGNARIDFLELGLSADSEMADMI 179
A+E+AE+ N+LG+LIGPAHAFTPWT+LYKEY+SLKEAYG+A++DFLELGLSADSEMADMI
Sbjct: 121 AQEIAEIANDLGILIGPAHAFTPWTSLYKEYDSLKEAYGDAKVDFLELGLSADSEMADMI 180
Query: 180 RAHHKLTYLSNSDAHSPQPHRLGREFNRFDVKEVTFEEVRKAILKRGGKRIVLNAGLDPR 239
RAHHKL YLSNSDAHSP PHRLGREFNRF V+++TF+E+RKAI RGG++IVLNAGLDPR
Sbjct: 181 RAHHKLPYLSNSDAHSPHPHRLGREFNRFKVEDITFDEIRKAISGRGGRKIVLNAGLDPR 240
Query: 240 LGKYHLTACSRCYTKYSLQDAISLRWRCPKCGGMIKKGVRDRILELADTNERPRDRPPYL 299
LGKYHLTACSRCYTKYSL+DAI+LRW+CPKCGG IKKGVRDRILELADTNERP+DRPPYL
Sbjct: 241 LGKYHLTACSRCYTKYSLRDAIALRWKCPKCGGTIKKGVRDRILELADTNERPKDRPPYL 300
Query: 300 RLAPLAEIISQVLGKGVETKAVKVVWERFLREFRSEIKVLVDVPVDALARVHEEVAKAIW 359
RLAPLAEII + KG+E+K+V+ +W+RF+REF SEI VLVDVP++ LA+VHEEVAKAIW
Sbjct: 301 RLAPLAEIIGMSINKGIESKSVRRIWKRFVREFGSEIAVLVDVPIEELAKVHEEVAKAIW 360
Query: 360 AYRNGKLIIIPGGGGKYGEIRIPEEVLKARIEDLESVELRVEVEEIKPKQLNLMEFLK 417
AYRNGKLIIIPGGGGKYGEI++P+E+ A+IE+LES+ + + E IKPKQ +++ FLK
Sbjct: 361 AYRNGKLIIIPGGGGKYGEIKLPDELKNAKIENLESLSINLREESIKPKQTSILNFLK 418
>pir||D69040 conserved hypothetical protein MTH1305 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622410|gb|AAB85783.1| (AE000895) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 386
Score = 388 bits (987), Expect = e-107
Identities = 201/391 (51%), Positives = 272/391 (69%), Gaps = 11/391 (2%)
Query: 1 MLVDGDLHIHSHYSKAVSKLMIFPVIAENAKLKGLGLVGSGDILNPHWEEELLKWEKVD- 59
M+++ DLHIHS +S+A S+ M+ IA A+LKGL LVG+GD L+P W + + + + +
Sbjct: 1 MIINADLHIHSCFSRATSRNMVIDNIAPQARLKGLQLVGTGDALHPGWRKIIAESTEYEG 60
Query: 60 DGTFEVKGVRFLLTAEVEDNRRVHHLLIFPSLSQVHELREILRKYSQDIESEGRPHINLS 119
DG + F++TAEVED+RRVHHLLI PSL E+ + S ++GRP + ++
Sbjct: 61 DGIYGRDECSFVITAEVEDSRRVHHLLILPSLEAAEEIAGRMPSAST---TDGRPRVRMN 117
Query: 120 AEELAELCNELGVLIGPAHAFTPWTALYKEYNSLKEAYGNARIDFLELGLSADSEMADMI 179
++ EL +E + GP+HAFTPWT++YK Y+S + YG AR DFLELGLSAD++MAD I
Sbjct: 118 GAQILELVHEYDGMAGPSHAFTPWTSMYKSYDSYMDCYG-ARPDFLELGLSADTDMADKI 176
Query: 180 RAHHKLTYLSNSDAHSPQPHRLGREFNRFDVKEVTFEEVRKAILKRGGKRIVLNAGLDPR 239
+ +L+NSDAHSP PHRLGREFN+F++++V+F +R+AI G RI N GLDPR
Sbjct: 177 AELADIPFLTNSDAHSPWPHRLGREFNQFEMEDVSFTSLRRAI---GKCRIRANYGLDPR 233
Query: 240 LGKYHLTACSRCYTKYSLQDAISLRWRCPKCGGMIKKGVRDRILELADTNE--RPRDRPP 297
LGKYH+TAC+RCY YS ++A+ + RCP CGG IKKGV RI EL+ +E P RPP
Sbjct: 234 LGKYHMTACTRCYRIYSPEEALEMDMRCP-CGGKIKKGVDYRIYELSTWDEPHHPPHRPP 292
Query: 298 YLRLAPLAEIISQVLGKGVETKAVKVVWERFLREFRSEIKVLVDVPVDALARVHEEVAKA 357
Y+ L PLAEII KGV TK V+ +WE+ + EF +EI+VL+D P++ +A + VA A
Sbjct: 293 YVHLMPLAEIIGMKYDKGVTTKFVQGIWEKLVGEFGTEIRVLLDAPLEDIAALDTGVAVA 352
Query: 358 IWAYRNGKLIIIPGGGGKYGEIRIPEEVLKA 388
+ A+RNG LI+IPGGGGKYGEIR P E L A
Sbjct: 353 VEAFRNGSLIVIPGGGGKYGEIRFPAETLDA 383
>sp|Q60348|Y043_METJA HYPOTHETICAL PROTEIN MJ0043 >gi|2127759|pir||C64305 ansR 5'-region
hypothetical intein-containing protein homolog MJ0043 -
Methanococcus jannaschii >gi|1498803|gb|AAB98023.1|
(U67462) intein containing hypothetical protein
[Methanococcus jannaschii]
Length = 785
Score = 278 bits (704), Expect = 7e-74
Identities = 139/276 (50%), Positives = 195/276 (70%), Gaps = 14/276 (5%)
Query: 117 NLSAEELAELCNELGVLIGPAHAFTPWTALYKEYNSLKEAYGNARIDFLELGLSADSEMA 176
NL E+ + G L + FTPWT+LYK ++S+ + Y N + DF+ELGLSAD++MA
Sbjct: 502 NLEVEDDSSYVTVSGTL---HNCFTPWTSLYKSFDSIYDCY-NKKPDFVELGLSADTDMA 557
Query: 177 DMIRAHHKLTYLSNSDAHSPQPHRLGREFNRFDVK-----EVTFEEVRKAILKRGGKRIV 231
DMI L +LSNSDAHS PHRLGREFN+ +V E FE+++KAI +I+
Sbjct: 558 DMIPELRDLPFLSNSDAHSYHPHRLGREFNQIEVDYIGGIEDNFEQIKKAIKHN---KII 614
Query: 232 LNAGLDPRLGKYHLTACSRCYTKYSLQDAISLRWRCPKCGGMIKKGVRDRILELADTN-E 290
N GLDP+LGKYHLTACS+C+T++ L+DA W+CPKCGG IKKGV R+ EL+D E
Sbjct: 615 ANYGLDPKLGKYHLTACSKCHTRFKLEDAKKYNWKCPKCGGSIKKGVLSRVEELSDGKIE 674
Query: 291 RPRDRPPYLRLAPLAEIISQVLGKGVETKAVKVVWERFLREFRSEIKVLVDVPVDALARV 350
P+ RPPY +L PLAE+IS +GKG+ TKAV+ +WE F++++ +EI+VL++ +D L+++
Sbjct: 675 HPKFRPPYYKLIPLAEMISLTIGKGIFTKAVQSLWEEFIKKYGNEIEVLINADIDELSKI 734
Query: 351 HEEVAKAIWAYRNGKLIIIPGGGGKYGEIRI-PEEV 385
H +VA+ I +R GK+ I PGGGG+YG+I P++V
Sbjct: 735 HPKVAETINLFRKGKIYIYPGGGGEYGKISFKPQKV 770
Score = 132 bits (328), Expect = 9e-30
Identities = 67/149 (44%), Positives = 94/149 (62%), Gaps = 10/149 (6%)
Query: 1 MLVDGDLHIHSHYSKAVSKLMIFPVIAENAKLKGLGLVGSGDILNPHWEEELLKWEKVDD 60
M+ + DLHIHS +S SK M I + KLKGL ++G+GD +P + EE+ ++
Sbjct: 1 MIANVDLHIHSRFSGGTSKDMNVENILKYGKLKGLNIIGTGDCTHPDYLEEIKQY----- 55
Query: 61 GTFEVKGVRFLLTAEVEDNRRVHHLLIFPSLSQVHELREILRKYSQDIESEGRPHINLSA 120
K +LT E+ED RVHHL++ PS+S+V ELREIL+KYS+DI+ EGRP +++
Sbjct: 56 -----KDRELILTTEIEDKNRVHHLILLPSISKVEELREILKKYSKDIDKEGRPRVSIGG 110
Query: 121 EELAELCNELGVLIGPAHAFTPWTALYKE 149
EL E+ ++G LIGPAH P T L E
Sbjct: 111 AELLEIVRDVGGLIGPAHCVPPDTLLILE 139
>sp|P38423|YQXK_BACSU HYPOTHETICAL 32.2 KD PROTEIN IN BMRU-ANSR INTERGENIC REGION (ORF2)
>gi|7474707|pir||E69968 conserved hypothetical protein
yqxK - Bacillus subtilis >gi|1303985|dbj|BAA12640.1|
(D84432) YqkH [Bacillus subtilis]
>gi|2634795|emb|CAB14292.1| (Z99116) alternate gene
name: yqkH~similar to hypothetical proteins [Bacillus
subtilis]
Length = 294
Score = 144 bits (360), Expect = 2e-33
Identities = 103/303 (33%), Positives = 157/303 (50%), Gaps = 22/303 (7%)
Query: 82 VHHLLIFPSLSQVHELREILRKYSQDIESEGRPHINLSAEELAELCNELGVLIGPAHAFT 141
+H L+ P+L+ + + L ++I + I + L + ++G L PAH FT
Sbjct: 9 IHVLVFMPTLADMKQFSNWLSARLKNIHLSSQ-RIYETGLNLQKKVQDMGGLFIPAHIFT 67
Query: 142 PWTALYKE--YNSLKEAYGNARIDFLELGLSADSEMADMIRAHHKLTYLSNSDAHSPQPH 199
P +LY + +SL E + + ID +ELGLS D++MA + + +L+NSDAHS
Sbjct: 68 PHKSLYGKGVKSSLTEVFDPSMIDAVELGLSCDTDMASHVSQLNPYPFLTNSDAHSLG-- 125
Query: 200 RLGREFNRFDVKEVTFEEVRKAILKRGGKRIVLNAGLDPRLGKYHLTACSRCYTKYSLQD 259
++GRE+N V+ F E A+ + ++I+ N GLDP LGKY+ TAC C +
Sbjct: 126 KIGREYNELYVQSADFTEFALALKGQDDRKIIANYGLDPLLGKYYQTACEACG-----EP 180
Query: 260 AISLRWRCPKCG-GMIKKGVRDRILELADTNERPRDRPPYLRLAPLAEIISQVLGKGVET 318
A+S C CG KGV DR+ EL+D E RP Y+ PL + GV
Sbjct: 181 AVSGETACANCGKARFTKGVSDRLRELSDQLEVRVPRPRYVHQIPLQFV------PGVGP 234
Query: 319 KAVKVVWERFLREFRSEIKVLVDVPVDALAR-VHEEVAKAIWAYRNGKLIIIPGGGGKYG 377
K + ++ + F +E+ VL + + LAR V + A I R+GKL + GGGG YG
Sbjct: 235 KTL----DKLKKAFGTEMAVLHEAAEEDLARVVPPKTAALIVKARSGKLELKAGGGGTYG 290
Query: 378 EIR 380
+I+
Sbjct: 291 KIK 293
>dbj|BAB05244.1| (AP001512) unknown conserved protein [Bacillus halodurans]
Length = 391
Score = 143 bits (358), Expect = 3e-33
Identities = 130/403 (32%), Positives = 194/403 (47%), Gaps = 54/403 (13%)
Query: 6 DLHIHSHYSK--------AVSKLMIFPVIAENAKLKGLGLVGSGDILNPHWEEEL--LKW 55
DLHIH + A L + +I +KG+ ++G +++ H E L LK
Sbjct: 10 DLHIHLGQTASNRPVKITAARTLTLENIIDYARTVKGIDIIG---VIDCHVPEVLEGLKH 66
Query: 56 EKVDDGTFEVKG-------VRFLLTAEVE--DNRR---VHHLLIFPSLSQVHELREIL-- 101
+E+KG V +L E+E D VH L P+ + + EL +
Sbjct: 67 SIESGEAYELKGGGIRFPDVTLILGTEIEVYDEESLGPVHVLAYTPTWNAMMELSSWMGS 126
Query: 102 RKYSQDIESEGRPHINLSAEELAELCNELGVLIGPAHAFTPWTALYKE--YNSLKEAYGN 159
R + + S+ + ++ L + ELG L PAHAFTP+ +Y + S+ E +
Sbjct: 127 RMKNPTLSSQ---RLYETSIVLQQKVKELGGLFIPAHAFTPFKGVYGKGVKQSMGEIFDL 183
Query: 160 ARIDFLELGLSADSEMADMIRAHHKLTYLSNSDAHSPQPHRLGREFNRFDVKEVTFEEVR 219
A ID +ELGLSAD+ MAD + H+ +LSNSDAHS + +L RE+ + E +F+ +
Sbjct: 184 ALIDGIELGLSADTSMADQVEELHRFPFLSNSDAHSLE--KLAREYQILHLYEPSFQAFQ 241
Query: 220 KAILKRGGKRIVLNAGLDPRLGKYHLTACSRCYTKYSLQDAISLRWRCPKCG-GMIKKGV 278
A+ + IV N GL+P LGKY+ T C++C T C CG + KGV
Sbjct: 242 SALRDKDKCSIVANYGLNPYLGKYYETTCAQCRTPMKGS-------ACETCGSSKVVKGV 294
Query: 279 RDRILELADTNE-RPRDRPPYLRLAPLAEIISQVLGKGVETKAVKVVWERFLREFRSEIK 337
+R+ ELA +E + RPPY+ PL E I +V G T A R F +++
Sbjct: 295 SERLTELATASENNGKQRPPYVHQIPL-EFIPKV---GKRTLA------RLREAFGTDMD 344
Query: 338 VLVDVPVDALARV-HEEVAKAIWAYRNGKLIIIPGGGGKYGEI 379
+L + L V +A+AI R GK I GGGG YG++
Sbjct: 345 ILHQATFEQLCDVIPNHIAEAIVIAREGKATIKRGGGGHYGKM 387
>pir||A40617 orf2 5' of ansR - Bacillus subtilis (fragment)
Length = 214
Score = 123 bits (306), Expect = 3e-27
Identities = 84/230 (36%), Positives = 122/230 (52%), Gaps = 19/230 (8%)
Query: 153 LKEAYGNARIDFLELGLSADSEMADMIRAHHKLTYLSNSDAHSPQPHRLGREFNRFDVKE 212
L E + + ID +ELGLS D++MA + + +L+NSDAHS ++GRE+N V+
Sbjct: 1 LTEVFDPSMIDAVELGLSCDTDMASHVSQLNPYPFLTNSDAHSLG--KIGREYNELYVQS 58
Query: 213 VTFEEVRKAILKRGGKRIVLNAGLDPRLGKYHLTACSRCYTKYSLQDAISLRWRCPKCG- 271
F E A+ + ++I+ N GLDP LGKY+ TAC C + A+S C CG
Sbjct: 59 ADFTEFALALKGQDDRKIIANYGLDPLLGKYYQTACEACG-----EPAVSGETACANCGK 113
Query: 272 GMIKKGVRDRILELADTNERPRDRPPYLRLAPLAEIISQVLGKGVETKAVKVVWERFLRE 331
KGV DR+ EL+D E RP Y+ PL + GV K + ++ +
Sbjct: 114 ARFTKGVSDRLRELSDQLEVRVPRPRYVHQIPLQFV------PGVGPKTL----DKLKKA 163
Query: 332 FRSEIKVLVDVPVDALAR-VHEEVAKAIWAYRNGKLIIIPGGGGKYGEIR 380
F +E+ VL + + LAR V + A I R+GKL + GGGG YG+I+
Sbjct: 164 FGTEMAVLHEAAEEDLARVVPPKTAALIVKARSGKLELKAGGGGTYGKIK 213
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.139 0.409
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158547283
Number of Sequences: 2977
Number of extensions: 6864256
Number of successful extensions: 17178
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17151
Number of HSP's gapped (non-prelim): 8
length of query: 417
length of database: 189,106,746
effective HSP length: 55
effective length of query: 362
effective length of database: 156,189,961
effective search space: 56540765882
effective search space used: 56540765882
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)