BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0433 (PAB0433) DE:Hypothetical protein
         (115 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75183 hypothetical protein PAB0433 - Pyrococcus abyssi (st...   229  7e-60
pir||C71030 hypothetical protein PH1533 - Pyrococcus horikoshii ...    99  1e-20

>pir||H75183 hypothetical protein PAB0433 - Pyrococcus abyssi (strain Orsay)
           >gi|5458061|emb|CAB49551.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 115
           
 Score =  229 bits (579), Expect = 7e-60
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MKKGLFLYFLGLGLAIVKPPVVRLACMDISTGRVLTDIDPFFLVIELGFIFVGSYLMALS 60
           MKKGLFLYFLGLGLAIVKPPVVRLACMDISTGRVLTDIDPFFLVIELGFIFVGSYLMALS
Sbjct: 1   MKKGLFLYFLGLGLAIVKPPVVRLACMDISTGRVLTDIDPFFLVIELGFIFVGSYLMALS 60

Query: 61  HKFKSVHAMNGFIALASGIGAAFVGFYSDIFVLALFGAVLATIGLITYKLSRWFS 115
           HKFKSVHAMNGFIALASGIGAAFVGFYSDIFVLALFGAVLATIGLITYKLSRWFS
Sbjct: 61  HKFKSVHAMNGFIALASGIGAAFVGFYSDIFVLALFGAVLATIGLITYKLSRWFS 115


>pir||C71030 hypothetical protein PH1533 - Pyrococcus horikoshii
           >gi|3257960|dbj|BAA30643.1| (AP000006) 133aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 133
           
 Score = 99.5 bits (244), Expect = 1e-20
 Identities = 51/109 (46%), Positives = 72/109 (65%), Gaps = 5/109 (4%)

Query: 4   GLFLYFLGLGLAIVKPPVVRLACMDISTGRVLTDIDPFFLVIELGFIFVGSYLMALSHKF 63
           G+ LY  GL ++IVKPP+ RLACM + +G V T ++P  L IELG I +GS L+A   K 
Sbjct: 30  GIILYLSGLVMSIVKPPIERLACMVVPSGEVCTGVNPIILSIELGLILLGSMLLAQCSKE 89

Query: 64  KSVHAMNGFIALASGIGAAFVGFYSDIFVLALFGAVLATIGLITYKLSR 112
           K      G++A+++G+G A +G YS +  L L GAVL ++GL+ YKL R
Sbjct: 90  KL-----GWMAVSTGVGIAIIGGYSGLSSLVLLGAVLGSMGLVVYKLRR 133


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.334    0.150    0.452 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38499392
Number of Sequences: 2977
Number of extensions: 1337841
Number of successful extensions: 7445
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7443
Number of HSP's gapped (non-prelim): 2
length of query: 115
length of database: 189,106,746
effective HSP length: 46
effective length of query: 69
effective length of database: 161,576,344
effective search space: 11148767736
effective search space used: 11148767736
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 39 (21.6 bits)
S2: 160 (66.7 bits)