BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0435 (PAB0435) DE:Hypothetical protein
(420 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75184 hypothetical protein PAB0435 - Pyrococcus abyssi (st... 796 0.0
pir||A71030 hypothetical protein PH1531 - Pyrococcus horikoshii ... 704 0.0
pir||D72364 conserved hypothetical protein - Thermotoga maritima... 228 7e-59
pir||H72581 hypothetical protein APE1932 - Aeropyrum pernix (str... 100 4e-20
gb|AAK42549.1| Conserved hypothetical protein [Sulfolobus solfat... 92 8e-18
pir||A72599 hypothetical protein APE1257 - Aeropyrum pernix (str... 85 1e-15
pir||E82572 ABC transporter sodium permease XF2328 [imported] - ... 82 2e-14
pir||E69049 hypothetical protein MTH1372 - Methanobacterium ther... 74 3e-12
>pir||B75184 hypothetical protein PAB0435 - Pyrococcus abyssi (strain Orsay)
>gi|5458063|emb|CAB49553.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 420
Score = 796 bits (2033), Expect = 0.0
Identities = 420/420 (100%), Positives = 420/420 (100%)
Query: 1 MSDFMVVLKKELKDMFRDKGLIVGIIIVPLILYPALGQMIQVGMEEAKKETKVVIANFDE 60
MSDFMVVLKKELKDMFRDKGLIVGIIIVPLILYPALGQMIQVGMEEAKKETKVVIANFDE
Sbjct: 1 MSDFMVVLKKELKDMFRDKGLIVGIIIVPLILYPALGQMIQVGMEEAKKETKVVIANFDE 60
Query: 61 GNYANLIIKGLKLAPNVTVVTINASNIEEALRIAQEKRYNVLVVIPSNFSESIESNEKAV 120
GNYANLIIKGLKLAPNVTVVTINASNIEEALRIAQEKRYNVLVVIPSNFSESIESNEKAV
Sbjct: 61 GNYANLIIKGLKLAPNVTVVTINASNIEEALRIAQEKRYNVLVVIPSNFSESIESNEKAV 120
Query: 121 VEVYGIFSGLSLGMKESISESRISAVVNIISEELAKLKIKGNFKNPEAVLHPIDVKGYSV 180
VEVYGIFSGLSLGMKESISESRISAVVNIISEELAKLKIKGNFKNPEAVLHPIDVKGYSV
Sbjct: 121 VEVYGIFSGLSLGMKESISESRISAVVNIISEELAKLKIKGNFKNPEAVLHPIDVKGYSV 180
Query: 181 VKGKIVNLPPSVVSGILASQAFSIPIVIFIMFTFVSQMSASSIASEKENKTLETLLTLPV 240
VKGKIVNLPPSVVSGILASQAFSIPIVIFIMFTFVSQMSASSIASEKENKTLETLLTLPV
Sbjct: 181 VKGKIVNLPPSVVSGILASQAFSIPIVIFIMFTFVSQMSASSIASEKENKTLETLLTLPV 240
Query: 241 SRTSIVAGKMVGAGIMGLIAAIAYMIGMKRYFASFGEMNVSLSDIGIRIEPRAYILFAVI 300
SRTSIVAGKMVGAGIMGLIAAIAYMIGMKRYFASFGEMNVSLSDIGIRIEPRAYILFAVI
Sbjct: 241 SRTSIVAGKMVGAGIMGLIAAIAYMIGMKRYFASFGEMNVSLSDIGIRIEPRAYILFAVI 300
Query: 301 MFLTIIFAITLSMLLGVFAEDTKSANTLVSMVMMPLLFPTFAFMIVDVQSIPPLVRYILY 360
MFLTIIFAITLSMLLGVFAEDTKSANTLVSMVMMPLLFPTFAFMIVDVQSIPPLVRYILY
Sbjct: 301 MFLTIIFAITLSMLLGVFAEDTKSANTLVSMVMMPLLFPTFAFMIVDVQSIPPLVRYILY 360
Query: 361 AIPFSHPVIASRAMLFGDYGIMIRSIAYLTVLSLGTLYLTAKFFSTEKLLTAKLRLKRKS 420
AIPFSHPVIASRAMLFGDYGIMIRSIAYLTVLSLGTLYLTAKFFSTEKLLTAKLRLKRKS
Sbjct: 361 AIPFSHPVIASRAMLFGDYGIMIRSIAYLTVLSLGTLYLTAKFFSTEKLLTAKLRLKRKS 420
>pir||A71030 hypothetical protein PH1531 - Pyrococcus horikoshii
>gi|3257958|dbj|BAA30641.1| (AP000006) 420aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 420
Score = 704 bits (1796), Expect = 0.0
Identities = 353/420 (84%), Positives = 400/420 (95%)
Query: 1 MSDFMVVLKKELKDMFRDKGLIVGIIIVPLILYPALGQMIQVGMEEAKKETKVVIANFDE 60
MSDFMV+L KEL+DM RD+G+IVGIIIVPLILYPALGQMIQ+GMEEAKKET VVIANFDE
Sbjct: 1 MSDFMVILMKELRDMLRDRGVIVGIIIVPLILYPALGQMIQIGMEEAKKETSVVIANFDE 60
Query: 61 GNYANLIIKGLKLAPNVTVVTINASNIEEALRIAQEKRYNVLVVIPSNFSESIESNEKAV 120
G YA LIIKGLKL PNVTV+TI A +IEEAL+IAQEK+YNVLVVIP NFS+SIE NEKAV
Sbjct: 61 GAYAKLIIKGLKLTPNVTVITIEAESIEEALKIAQEKKYNVLVVIPRNFSKSIEENEKAV 120
Query: 121 VEVYGIFSGLSLGMKESISESRISAVVNIISEELAKLKIKGNFKNPEAVLHPIDVKGYSV 180
++VYGIF+GLSLGMKESISESRI+AVVNII EELAKLKIK NF+NPEAVLHPI+VKGYSV
Sbjct: 121 IDVYGIFTGLSLGMKESISESRINAVVNIIGEELAKLKIKNNFENPEAVLHPIEVKGYSV 180
Query: 181 VKGKIVNLPPSVVSGILASQAFSIPIVIFIMFTFVSQMSASSIASEKENKTLETLLTLPV 240
VKG+IVNLPPS+VSGILASQAFSIPIV+FIMFTFVSQM+ASS+ASEKENKTLETLLTLPV
Sbjct: 181 VKGRIVNLPPSIVSGILASQAFSIPIVVFIMFTFVSQMAASSVASEKENKTLETLLTLPV 240
Query: 241 SRTSIVAGKMVGAGIMGLIAAIAYMIGMKRYFASFGEMNVSLSDIGIRIEPRAYILFAVI 300
SRTSIVAGKM+GAGIMGLIAAI+YMIGM++YF+SF EMN++LS+IGI+IEPR+Y LFA+I
Sbjct: 241 SRTSIVAGKMIGAGIMGLIAAISYMIGMRKYFSSFTEMNINLSEIGIKIEPRSYALFAII 300
Query: 301 MFLTIIFAITLSMLLGVFAEDTKSANTLVSMVMMPLLFPTFAFMIVDVQSIPPLVRYILY 360
MFLTI+FAI L+MLLGVFAEDTKSANTLVSMVMMPLLFPTFAFM+VD+QSIPPLVRY LY
Sbjct: 301 MFLTIVFAIALAMLLGVFAEDTKSANTLVSMVMMPLLFPTFAFMVVDLQSIPPLVRYTLY 360
Query: 361 AIPFSHPVIASRAMLFGDYGIMIRSIAYLTVLSLGTLYLTAKFFSTEKLLTAKLRLKRKS 420
AIPFSHPVIASRAMLFG+Y +M+RSI YLT++SL TLY+TA+ FS+EKLLTA+L+LKR+S
Sbjct: 361 AIPFSHPVIASRAMLFGEYEVMLRSIIYLTLISLLTLYVTARLFSSEKLLTARLKLKRRS 420
>pir||D72364 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981057|gb|AAD35628.1|AE001729_8 (AE001729)
conserved hypothetical protein [Thermotoga maritima]
Length = 412
Score = 228 bits (576), Expect = 7e-59
Identities = 134/416 (32%), Positives = 234/416 (56%), Gaps = 12/416 (2%)
Query: 4 FMVVLKKELKDMFRDKGLIVGIIIVPLILYPALGQMIQVGMEEAKKETKVVIANFDEGNY 63
F +LKKE+K++ + G IV +I+V +LY +LG + + +E++ KV I D G
Sbjct: 2 FGKLLKKEIKELL-NLGAIVSVIVVA-VLYGSLGNVFKSTVEKSTVGQKVAIVREDTGTI 59
Query: 64 ANLIIKGLKLAPNVTVVTINASNIEEALRIAQEKRYNVLVVIPSNFSESIESNEKAVVEV 123
A L K L N+ + S+++EA ++++ ++VIP FS+S+ES EKA +E+
Sbjct: 60 AELAEKALG---NMVDIVYAGSDLKEAEEAVKKEKAPAIIVIPKGFSQSLESGEKARLEI 116
Query: 124 YGIFSGLSLGMKESISESRISAVVNIISEELAKLKIKGNFKNPEAVLHPIDVKGYSVVKG 183
G G+ E++S IS+++ + +LA + K + + P+++ ++ ++G
Sbjct: 117 VWYLRGT--GLSEAVSTGTISSLIESLKVQLASFLLNDP-KKAQLLFDPLEIVQHTYLRG 173
Query: 184 KIV-NLPPSVVSGILASQAFSIPIVIFIMFTFVSQMSASSIASEKENKTLETLLTLPVSR 242
+ N P + + SQ IPI+I ++ SS+A EKENKTLETLLT+PV R
Sbjct: 174 SLFKNHSPEAIMNVFYSQNIMIPILIMMLIIMSGSSLISSLAMEKENKTLETLLTMPVKR 233
Query: 243 TSIVAGKMVGAGIMGLIAAIAYMIGMKRYFASFGEMNVSLSDIGIRIEPRAYILFAVIMF 302
I K+VG+ I+GLI A YM G Y S + ++ +G+ + ++L +F
Sbjct: 234 EHIALAKIVGSAIVGLILAGIYMAGFYSYLNSLTQ---NVQGMGLNFKAVDFLLMGSSLF 290
Query: 303 LTIIFAITLSMLLGVFAEDTKSANTLVSMVMMPLLFPTFAFMIVDVQSIPPLVRYILYAI 362
L+I+ ++L MLLG+ A+D +SA L + + L P A MI+D ++P +++ I++ I
Sbjct: 291 LSILAGLSLCMLLGMMAKDYRSAQLLTFPISILALVPMIANMIMDFSNLPGVLKVIVFLI 350
Query: 363 PFSHPVIASRAMLFGDYGIMIRSIAYLTVLSLGTLYLTAKFFSTEKLLTAKLRLKR 418
PFSHP+++ + +GDYG+++ I YL + S+ T + F+++ ++ R KR
Sbjct: 351 PFSHPIMSPKLAFYGDYGLIVSGILYLLIFSIVTTVFVFRIFNSDYVVLGWQREKR 406
>pir||H72581 hypothetical protein APE1932 - Aeropyrum pernix (strain K1)
>gi|5105628|dbj|BAA80941.1| (AP000062) 380aa long
hypothetical protein [Aeropyrum pernix]
Length = 380
Score = 100 bits (246), Expect = 4e-20
Identities = 101/409 (24%), Positives = 176/409 (42%), Gaps = 55/409 (13%)
Query: 25 IIIVPLILYPALGQMIQVGMEEAKKETKVVIANFDEGNYANLIIKGLK--LAPNVTVVTI 82
++++PL+ P L I G + + V I + D ++L +GL L + V +
Sbjct: 1 MVVLPLVALPGLA--IFSGGLYSAQSMDVYIVDEDGSEISSLFAEGLAEYLESGLPGVAV 58
Query: 83 NASNIEEALRIAQEKRYNVLVVIPSNFSESIESNEKAVV-------------EVYGIFSG 129
N I + ++ VVIP FS +E + V +V + G
Sbjct: 59 NVE-ILSGVEGFDTPFGSIAVVIPEGFSRGLEDLDGRVSIRLVVTPGSPLAGQVASLVEG 117
Query: 130 LSLGMKESISESRISAVVNIISEELAKLKIKGNFKNPEAVLHPIDVK--------GYSVV 181
+ +E++ ESR+S + E+ + E +L P++V+ G +
Sbjct: 118 YASLFEEAVVESRVSRLAEAAGVEV----------DVERLLDPLEVEREYIGFGGGAAGA 167
Query: 182 KGKIVNLPPSVVSGILASQAFSIPIVIFIMFTFVSQMSASSIASEKENKTLETLLTLPVS 241
+G+ V + VV AFS+ V+ FVS SI E+E +TLE LL S
Sbjct: 168 RGEAVAMSARVV-------AFSLFFVVNPAIVFVSD----SIVGERERRTLEKLLLTGAS 216
Query: 242 RTSIVAGKMVGAGIMGLIAAIAYMIGMKRYFASFGEMNVSLSDIGIRIEPRAYILFAVIM 301
R I+ GK+ A +GL AA A + + +F +LS + + P +A
Sbjct: 217 RLEILVGKVAAAAALGLAAAAADSLALVAFF--------TLSGFSLLLSPLLVASWAASS 268
Query: 302 FLTIIFAITLSMLLGVFAEDTKSANTLVSMVMMPLLFPTFAFMIVDVQSIPPLVRYILYA 361
L +I ++ + +E +SA + +V+M L F+ ++VD +P + +L A
Sbjct: 269 ALLVILTAGITAFISARSETIRSAQSGSFIVLMVALAIYFSALVVDYSRLPAWLSILLQA 328
Query: 362 IPFSHPVIASRAMLFGDYGIMIRSIAYLTVLSLGTLYLTAKFFSTEKLL 410
IPF+H +A GD +A LT + + A+ FS+E+++
Sbjct: 329 IPFTHASLAVIKASVGDLAATTIHMAVLTGFTALFIAAAAREFSSERII 377
>gb|AAK42549.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 397
Score = 92.4 bits (226), Expect = 8e-18
Identities = 100/411 (24%), Positives = 193/411 (46%), Gaps = 28/411 (6%)
Query: 7 VLKKELKDMFRDKGLIVGIIIVPLILYPALGQMIQVGMEEAKKETKVVIANFDEGNYANL 66
++KKE+ D+ RD+ L++G I++P +L P +G ++ + A + I N+++ N +
Sbjct: 6 MIKKEILDLKRDRKLLLGTIVLPFVLLPLIGIILYASI--AVSPPVIEIINYNQSNLPYI 63
Query: 67 IIKGLKLAPNVTVVTINASN---IEEALRIAQEKRYNVLVVIPSNFSESIESNEKAVVEV 123
I + N V N +N + +A+ I N + SN S EK ++
Sbjct: 64 QIISNYITRNGGTVIYNNTNTSIVPDAVIIFP----NDFNINASNISRQTFVYEKILISS 119
Query: 124 YGIFSGLSLGMKESISESRISAVVNIISEELAKLKIKGNFKNPEAVLHPIDVKGYSVVKG 183
S L + +I + V N I E L + NP+ V++P+ VK + V
Sbjct: 120 NQEASNL---VNNAIGYLSYTLVYNRI-ERLINSSNLQHVVNPDDVINPLLVKNFVVT-- 173
Query: 184 KIVNLPPSVVSGILASQAFSIPIVIFIMFTFVSQMSASSIASEKENKTLETLLTLPVSRT 243
I S L+ A I +V+F T V I EKE KTLE+LL P+S
Sbjct: 174 -ITGRNASQSQANLSEMARIITLVLFPSATPVIFYVTDGIVGEKERKTLESLLASPISIN 232
Query: 244 SIVAGKMVGAGIMGLIAAIAYMIGMKRYFA----SFGEMNVSLSDIGIRIEPRAYILFAV 299
S + K++ A I+G+++++ ++G+ + + +FG + +SLS I I Y+L
Sbjct: 233 SFIFSKVIIAVILGVLSSLGDILGIVIFSSLMSFTFG-LPLSLSTPFILIVILTYLL--- 288
Query: 300 IMFLTIIFAITLSMLLGVFAEDTKSANTLVSMVMMPLLFPTFAFMIVDVQSIPPLVRYIL 359
+ LT ++ L + LG + + N L ++ L +F+ + ++V ++ + +L
Sbjct: 289 AVLLTAALSVILLLALGGSMRNMQVINFL---ILSFGLIASFSALFINVANLQSPLNLVL 345
Query: 360 YAIPFSHPVIASRAMLFGDYGIMIRSIAYLTVLSLGTLYLTAKFFSTEKLL 410
IP+ ++ + G + + + + + + L ++++ F++E+LL
Sbjct: 346 -LIPYEQLSLSLLYFVSGSTFVSLSLLLGVFAVCVIILIVSSRLFNSERLL 395
>pir||A72599 hypothetical protein APE1257 - Aeropyrum pernix (strain K1)
>gi|5104933|dbj|BAA80247.1| (AP000061) 439aa long
hypothetical protein [Aeropyrum pernix]
Length = 439
Score = 85.4 bits (208), Expect = 1e-15
Identities = 111/433 (25%), Positives = 200/433 (45%), Gaps = 62/433 (14%)
Query: 10 KELKDMFRDKGLIVGIIIVPLILYPALGQMIQVGMEEAKKETKVVIANFDEG-----NYA 64
KELK++ RD+ L+ ++I P+ LG ++ + + EA + G A
Sbjct: 13 KELKEVLRDRTLLFNLVISPM-----LGVVVWIVVVEAIFAGSITPQTGSGGIPGLEGLA 67
Query: 65 NLIIKGLKLAPNVTVV--TINASNIEEALRIAQEKRYNVLVVIPSNFSESIESNEKAVVE 122
+ + G L+ V A ++EEAL+ Y +++VIP F+ +++ +A +E
Sbjct: 68 VVDLDGTPLSQAVATALGAAAAGSVEEALQAG----YKMVLVIPEGFASTLQKGGQARLE 123
Query: 123 VYGIFSG---LSLGMKESISESRISAVVNIISEELAKLKIKGNFKNPEAVLHPIDVKGYS 179
+Y I +G S G+ S S +S + + LAK + E ++ ++ K
Sbjct: 124 LY-IQAGEVLRSQGLLGFFSYSGLSGALEGAVDLLAKQAL--GIPTAEDLVR-VEEKPLG 179
Query: 180 VVKGKIVNLPPSVVSGILASQAFSIPIVIFIMFTFVSQMSASSIASEKENKTLETLLTLP 239
+++G + S +L F + + FI +F+ Q+SA ++ ++E +TLE LL P
Sbjct: 180 ILEG-------NPASHLLV--LFMLLMASFITGSFLLQVSAITVGYDREQRTLELLLATP 230
Query: 240 VSRTSIVAGKMVGAGIM---GLIAAIAYMIGMKRYFA-----------SFGEMNVSLSDI 285
+ VA ++ GA M GL++ A ++ M Y A + GE+ L +
Sbjct: 231 LRTRGYVAVRLAGAASMASVGLLSLAASLLIMMVYAAVRIPQEVGGGVTSGELASLLGEA 290
Query: 286 GIRIEPR-AYILFAVI-MFLTIIFAITLSMLLG-VFAEDTKSANTLVSMVMMPLLFPTFA 342
R+ P +L A+ + +T ++ +TL ++LG V A D KSA T M + L
Sbjct: 291 AERLAPTPGQVLVALASIAVTALYTLTLGLILGFVGAGDVKSAQTASGMSVFILF----- 345
Query: 343 FMIVDVQSIPPLVRYILYAIPFS-HPVIASRAMLF----GDYGIMIRSIAYLTVLSLGTL 397
+++ + +IP + +AIP + HP+ A+ A GDY + I +A S +
Sbjct: 346 ILLLPLAAIP---FRLPHAIPLALHPITAAPAAYLAYANGDYAMAIGMLASTLAGSALAV 402
Query: 398 YLTAKFFSTEKLL 410
A+ E+LL
Sbjct: 403 AAAARLSRPERLL 415
>pir||E82572 ABC transporter sodium permease XF2328 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107497|gb|AAF85127.1|AE004043_11 (AE004043) ABC
transporter sodium permease [Xylella fastidiosa]
Length = 394
Score = 81.5 bits (198), Expect = 2e-14
Identities = 90/374 (24%), Positives = 174/374 (46%), Gaps = 47/374 (12%)
Query: 2 SDFMVVLKKELKDMFRDKGLIVGIIIVPLILYPALGQMIQVGM-EEAKKETKV---VIAN 57
S V++KEL+D+ RD+ +V +++ +LYP + ++ +GM E++ +T+V +
Sbjct: 5 STLWTVIRKELRDILRDRRTLVLSLLLTPLLYPLI--ILGMGMLSESRVKTQVDQLLEVP 62
Query: 58 FDEGNYANLIIKGLK------LAPNVTVVT-INASNIEEALRIAQEKRYNVLVVIPSNFS 110
YA +I L +AP+ VVT I+ I+ ALRI ++
Sbjct: 63 TIGREYAPTLINFLAAKRLNAVAPSSDVVTAIHTQQIDVALRI------------DPGYA 110
Query: 111 ESIESNEKAVVEVYGIFSGLSLGMKESISESRISAVVNIISEELAKLKIKGNFKNPEAVL 170
++ A+VE+ ++ + I +R+ +N S+++ L++ +P+ V+
Sbjct: 111 DAWREGRPALVEI--VYDATRRDAE--IPVARLKDALNAYSQQVGMLRLLARGIDPQ-VV 165
Query: 171 HPIDVKGYSVVKGKIVNLPPSVVSGILASQAFSIPIVIFIMFTFVSQMSASSIASEKENK 230
PI++ + + P +L S + +VI F + + + A E+E +
Sbjct: 166 RPIEISTWDLAT-------PDAKRALLMSVILPMLLVI-TSFIGGASLVLDATAGERERQ 217
Query: 231 TLETLLTLPVSRTSIVAGKMVGAGIMGLIAAIAYMIGMKRYFASFGEMNVSLSDIGIRIE 290
+LE LLT PVSR IV GK+V A +GL++ + ++ K A +S + +
Sbjct: 218 SLEPLLTTPVSRHIIVTGKIVAACAVGLLSLLLTLLAFK-LSAQLASAEMS-QQLNVGFI 275
Query: 291 PRAYILFAVIMFLTIIFAITLSMLLGVFAEDTKSANTLVSMVMMPLLFPTFAFMIVDVQS 350
P +LF I+ + L L A+ K A + ++ +++ + P++A M ++S
Sbjct: 276 PMLQMLF--ILLPVLFMGTALLTFLAAAAKSVKEAQSHMAWLLLLPVLPSYAMMAYPLKS 333
Query: 351 IPPLVRYILYAIPF 364
+ +AIPF
Sbjct: 334 -----QLWQFAIPF 342
>pir||E69049 hypothetical protein MTH1372 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622481|gb|AAB85849.1| (AE000900)
unknown [Methanobacterium thermoautotrophicum]
Length = 374
Score = 74.1 bits (179), Expect = 3e-12
Identities = 42/157 (26%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 202 FSIPIVIFIMFTFVSQMSASSIASEKENKTLETLLTLPVSRTSIVAGKMVGAGIMGLIAA 261
F +P V+F+ F S M S+ EKE KT E LL +P+S T I+ GK++ + + I +
Sbjct: 186 FILPFVVFLPFFLGSNMVTDSVVGEKERKTFEVLLMVPLSETMIILGKILPSLVFSFIQS 245
Query: 262 IAYMIGMKRYFASFGEMNVSLSDIGIRIEPRAYILFAVIMFLTIIFAITLSMLLGVFAED 321
+ + +G+ + +R+ L A+++ +T + I + + + + A+
Sbjct: 246 MLW-LGLL---------------VLLRVPVYNMPLLALLLLITGLGFIGVGLFISILADS 289
Query: 322 TKSANTLVSMVMMPLLFPTFAFMIVDVQSIPPLVRYI 358
TK AN+ +++V+ F F + +D+ ++ PL+R+I
Sbjct: 290 TKEANSAITVVLFFATFILFVPLFMDMGALNPLIRFI 326
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.139 0.372
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126969305
Number of Sequences: 2977
Number of extensions: 4767128
Number of successful extensions: 16219
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 16206
Number of HSP's gapped (non-prelim): 9
length of query: 420
length of database: 189,106,746
effective HSP length: 61
effective length of query: 359
effective length of database: 152,599,039
effective search space: 54783055001
effective search space used: 54783055001
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 166 (69.1 bits)