BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0437 (PAB0437) DE:aminopeptidase from family M42
(348 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75105 aminopeptidase m42 PAB0437 [imported] - Pyrococcus a... 699 0.0
pir||E71029 probable Frv operon protein FrvX - Pyrococcus horiko... 672 0.0
pir||JC5634 deblocking aminopeptidase (EC 3.4.11.-) [validated] ... 654 0.0
pir||E71193 probable operon protein Frv - Pyrococcus horikoshii ... 341 6e-93
pir||D75152 aminopeptidase m42 PAB2096 [imported] - Pyrococcus a... 340 2e-92
sp|Q57975|Y555_METJA HYPOTHETICAL PROTEIN MJ0555 >gi|2127881|pir... 305 6e-82
pir||A69157 endo-1,4-beta-glucanase - Methanobacterium thermoaut... 300 1e-80
gi|11499384 endoglucanase (celM) [Archaeoglobus fulgidus] >gi|74... 293 3e-78
prf||2113327A endoglucanase [Clostridium thermocellum] 284 8e-76
sp|P55742|GUNM_CLOTM ENDOGLUCANASE M (EGM) (ENDO-1,4-BETA-GLUCAN... 284 8e-76
dbj|BAB06851.1| (AP001517) endo-1,4-beta-glucanase [Bacillus hal... 265 4e-70
gb|AAD47606.1|AF146565_2 (AF146565) endoglucanase [Methanococcus... 264 1e-69
pir||A69984 endo-1,4-beta-glucanase homolog ysdC - Bacillus subt... 251 1e-65
sp|P32153|FRVX_ECOLI PUTATIVE FRV OPERON PROTEIN FRVX >gi|541108... 224 9e-58
pir||D72301 endoglucanase - Thermotoga maritima (strain MSB8) >g... 220 2e-56
dbj|BAB06976.1| (AP001518) endo-1,4-beta-glucanase [Bacillus hal... 215 6e-55
pir||B69998 endo-1,4-beta-glucanase homolog ytoP - Bacillus subt... 214 1e-54
pir||C72301 endoglucanase - Thermotoga maritima (strain MSB8) >g... 202 4e-51
pir||D82912 Endo-1,4-beta-glucanase UU280 [imported] - Ureaplasm... 192 4e-48
pir||A72609 probable deblocking aminopeptidase APE1335 - Aeropyr... 189 4e-47
pir||E75067 aminopeptidase m42 PAB2375 [imported] - Pyrococcus a... 188 1e-46
pir||S56530 hypothetical protein f383 - Escherichia coli >gi|537... 186 4e-46
sp|P39366|SGCX_ECOLI PUTATIVE SGC REGION PROTEIN SGCX >gi|743557... 185 5e-46
pir||B71165 hypothetical protein PH0519 - Pyrococcus horikoshii ... 183 2e-45
pir||E75542 probable endoglucanase - Deinococcus radiodurans (st... 183 3e-45
pir||E65012 hypothetical protein b2384 - Escherichia coli (strai... 182 4e-45
pir||B72301 endoglucanase - Thermotoga maritima (strain MSB8) >g... 171 8e-42
sp|Q48677|PEPA_LACLC GLUTAMYL-AMINOPEPTIDASE >gi|1072381|emb|CAA... 161 2e-38
gb|AAG19796.1| (AE005064) endoglucanase; CelM [Halobacterium sp.... 153 2e-36
pir||S72475 glucanase (EC 3.2.1.-) - Anabaena variabilis >gi|152... 82 8e-15
pir||C69830 glucanase homolog yhfE - Bacillus subtilis >gi|22262... 81 2e-14
pir||D83374 hypothetical protein PA2172 [imported] - Pseudomonas... 80 5e-14
pir||G75040 probable aminopeptidase (EC 3.4.11.-) PAB0869 - Pyro... 74 3e-12
>pir||D75105 aminopeptidase m42 PAB0437 [imported] - Pyrococcus abyssi (strain
Orsay) >gi|5458068|emb|CAB49557.1| (AJ248285)
aminopeptidase from family M42 [Pyrococcus abyssi]
Length = 348
Score = 699 bits (1784), Expect = 0.0
Identities = 348/348 (100%), Positives = 348/348 (100%)
Query: 1 MVNYELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMI 60
MVNYELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMI
Sbjct: 1 MVNYELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMI 60
Query: 61 AAHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQ 120
AAHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQ
Sbjct: 61 AAHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQ 120
Query: 121 KPEERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRI 180
KPEERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRI
Sbjct: 121 KPEERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRI 180
Query: 181 AVYTMLEVARQLEDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGT 240
AVYTMLEVARQLEDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGT
Sbjct: 181 AVYTMLEVARQLEDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGT 240
Query: 241 PEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHL 300
PEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHL
Sbjct: 241 PEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHL 300
Query: 301 TKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKALENIHELKI 348
TKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKALENIHELKI
Sbjct: 301 TKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKALENIHELKI 348
>pir||E71029 probable Frv operon protein FrvX - Pyrococcus horikoshii
>gi|3257954|dbj|BAA30637.1| (AP000006) 353aa long
hypothetical Frv operon protein FrvX [Pyrococcus
horikoshii]
Length = 353
Score = 672 bits (1714), Expect = 0.0
Identities = 330/348 (94%), Positives = 343/348 (97%)
Query: 1 MVNYELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMI 60
MV+YELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAH+KGEGPKVMI
Sbjct: 6 MVDYELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHKKGEGPKVMI 65
Query: 61 AAHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQ 120
AAHMDQIGLMVT+IEKNGFLRVAPIGGVDPKTLIAQRFKVWIDK KFIYGVGASVPPHIQ
Sbjct: 66 AAHMDQIGLMVTHIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKGKFIYGVGASVPPHIQ 125
Query: 121 KPEERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRI 180
KPE+RKKAP+WDQIFIDIGAESKEEAE+MGV+IGTVITWDGRLERLGKHRFVSIAFDDRI
Sbjct: 126 KPEDRKKAPDWDQIFIDIGAESKEEAEDMGVKIGTVITWDGRLERLGKHRFVSIAFDDRI 185
Query: 181 AVYTMLEVARQLEDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGT 240
AVYT+LEVA+QL+D KADVYFVATVQEEVGLRGARTSAF IEPDYGFAIDVTIAAD+PGT
Sbjct: 186 AVYTILEVAKQLKDAKADVYFVATVQEEVGLRGARTSAFGIEPDYGFAIDVTIAADIPGT 245
Query: 241 PEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHL 300
PEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKK+EIPYQLEILLGGGTDAGAIHL
Sbjct: 246 PEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKHEIPYQLEILLGGGTDAGAIHL 305
Query: 301 TKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKALENIHELKI 348
TKAGVPTGALSVPARYIHSN EVVDERDVDATV+LM KALENIHELKI
Sbjct: 306 TKAGVPTGALSVPARYIHSNTEVVDERDVDATVELMTKALENIHELKI 353
>pir||JC5634 deblocking aminopeptidase (EC 3.4.11.-) [validated] - Pyrococcus
furiosus
Length = 348
Score = 654 bits (1669), Expect = 0.0
Identities = 315/348 (90%), Positives = 338/348 (96%)
Query: 1 MVNYELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMI 60
MV+YELLKKVVEAPGVSGYEF+GIRDVVIEEIKDYVDEV VDKLGNVIAH+KGEGPKVMI
Sbjct: 1 MVDYELLKKVVEAPGVSGYEFMGIRDVVIEEIKDYVDEVNVDKLGNVIAHKKGEGPKVMI 60
Query: 61 AAHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQ 120
AAHMDQIGLMVT+IEKNGFLRVAPIGG+DP+TLIAQRF VWIDK KFIYGVG SVPPHIQ
Sbjct: 61 AAHMDQIGLMVTHIEKNGFLRVAPIGGIDPRTLIAQRFNVWIDKGKFIYGVGGSVPPHIQ 120
Query: 121 KPEERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRI 180
KPE+RKKAP+WDQIFIDIGAESKEEAEE+GV+IGT++TWDGRLERLGKHRFVSIAFDDRI
Sbjct: 121 KPEDRKKAPDWDQIFIDIGAESKEEAEELGVKIGTIVTWDGRLERLGKHRFVSIAFDDRI 180
Query: 181 AVYTMLEVARQLEDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGT 240
AVYT++E ARQL+DTKAD+YFVATVQEEVGLRGARTSAF I PDYGFAIDVTIAADVPGT
Sbjct: 181 AVYTLIETARQLQDTKADIYFVATVQEEVGLRGARTSAFGINPDYGFAIDVTIAADVPGT 240
Query: 241 PEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHL 300
PEHKQVT LGKGTAIKIMDRSVICHPTIVRW+EELAKKYEIPYQ +ILLGGGTDAGAIHL
Sbjct: 241 PEHKQVTQLGKGTAIKIMDRSVICHPTIVRWMEELAKKYEIPYQWDILLGGGTDAGAIHL 300
Query: 301 TKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKALENIHELKI 348
T+AGVPTGA+S+PARYIHSNAEVVDERDVDA+VKLMVK LE+IHELKI
Sbjct: 301 TRAGVPTGAVSIPARYIHSNAEVVDERDVDASVKLMVKVLEHIHELKI 348
>pir||E71193 probable operon protein Frv - Pyrococcus horikoshii
>gi|3258257|dbj|BAA30940.1| (AP000007) 354aa long
hypothetical operon protein Frv [Pyrococcus horikoshii]
Length = 354
Score = 341 bits (866), Expect = 6e-93
Identities = 175/345 (50%), Positives = 243/345 (69%), Gaps = 8/345 (2%)
Query: 1 MVNYELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMI 60
MV+++L+++++EAPGVSGYE LGIRD+V++ +K+ DEVKVDKLGNVIAH KG P++M+
Sbjct: 9 MVDWKLMQEIIEAPGVSGYEHLGIRDIVVDVLKEVADEVKVDKLGNVIAHFKGSSPRIMV 68
Query: 61 AAHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQ 120
AAHMD+IG+MV +I+K+G+L + PIGGV P+TL+AQR + + +K + YGV +PPH++
Sbjct: 69 AAHMDKIGVMVNHIDKDGYLHIVPIGGVLPETLVAQRIRFFTEKGE-RYGVVGVLPPHLR 127
Query: 121 KPEERKKAP-EWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDR 179
+ +E K + +WDQI +D+GA SKEEAEEMG R+GTV + RL +HRF + DDR
Sbjct: 128 RGQEDKGSKIDWDQIVVDVGASSKEEAEEMGFRVGTVGEFAPNFTRLNEHRFATPYLDDR 187
Query: 180 IAVYTMLEVARQLEDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPG 239
I +Y M+E ARQL D +AD+Y V +VQEEVGLRGAR +++AI P+ G A+DVT A
Sbjct: 188 ICLYAMIEAARQLGDHEADIYIVGSVQEEVGLRGARVASYAINPEVGIAMDVTFAKQ--P 245
Query: 240 TPEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLE-ILLGGGTDAGAI 298
+ K V LGKG +MD +P + + +E+AKKYEIP Q+E GTDA +
Sbjct: 246 HDKGKIVPELGKG---PVMDVGPNINPKLRAFADEVAKKYEIPLQVEPSPRPTGTDANVM 302
Query: 299 HLTKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKALENI 343
+ + GV T LS+P RY+HS E+ D RDVD T+KL LE +
Sbjct: 303 QINREGVATAVLSIPIRYMHSQVELADARDVDNTIKLAKALLEEL 347
>pir||D75152 aminopeptidase m42 PAB2096 [imported] - Pyrococcus abyssi (strain
Orsay) >gi|5457809|emb|CAB49299.1| (AJ248284)
aminopeptidase from family M42 [Pyrococcus abyssi]
Length = 346
Score = 340 bits (862), Expect = 2e-92
Identities = 174/350 (49%), Positives = 246/350 (69%), Gaps = 8/350 (2%)
Query: 1 MVNYELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMI 60
MV+++L+++++EAPGVSGYEFLGIRD+V++ +K+ DEVKVDKLGNVIAH KG P+VM+
Sbjct: 1 MVDWKLMQEIIEAPGVSGYEFLGIRDLVVDLLKEVADEVKVDKLGNVIAHFKGSSPRVMV 60
Query: 61 AAHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQ 120
+AHMD+IG+MV +I+ NG+L + PIGGV P+TL+AQR + + +K + YGV +PPH++
Sbjct: 61 SAHMDKIGVMVNHIDNNGYLHIVPIGGVLPETLVAQRIRFFTEKGE-RYGVVGVLPPHLR 119
Query: 121 KPEERKKAP-EWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDR 179
+ ++ K +WDQI +D+GA +KEEAEEMG ++GTV + RL +HRF + DDR
Sbjct: 120 RGQQDKGGKIDWDQIVVDVGASNKEEAEEMGFKVGTVGEFAPNFTRLSEHRFATPYLDDR 179
Query: 180 IAVYTMLEVARQLEDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPG 239
I +Y M+E ARQL + +ADVY VA+VQEEVGLRGAR +++AI+P+ G A+DVT A
Sbjct: 180 ICLYAMIEAARQLGEHEADVYIVASVQEEVGLRGARVASYAIDPEIGIAMDVTFAKQ--P 237
Query: 240 TPEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLE-ILLGGGTDAGAI 298
+ K V LGKG +MD +P + + +E+AKKYEIP Q+E GTDA +
Sbjct: 238 HDKGKIVPELGKG---PVMDVGPNINPKLRAFADEVAKKYEIPLQVEPSPRPTGTDANVM 294
Query: 299 HLTKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKALENIHELKI 348
+ + GV T LS+P RY+HS E+ D RDVD T+KL LE + + +
Sbjct: 295 QINREGVATAVLSIPIRYMHSQVELADARDVDNTIKLAKALLEELKPMDL 344
>sp|Q57975|Y555_METJA HYPOTHETICAL PROTEIN MJ0555 >gi|2127881|pir||C64369 endoglucanase
homolog - Methanococcus jannaschii
>gi|1591260|gb|AAB98546.1| (U67504) endoglucanase (celM)
[Methanococcus jannaschii]
Length = 350
Score = 305 bits (772), Expect = 6e-82
Identities = 163/345 (47%), Positives = 228/345 (65%), Gaps = 7/345 (2%)
Query: 5 ELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMIAAHM 64
E LKK+ + G+SG E +R+ + +E++ Y D V++D GN+IA R +G K+MIAAHM
Sbjct: 5 EYLKKLSKLHGISGRED-SVREFMKKELEKYCDSVEIDNFGNLIAKRGNKGKKIMIAAHM 63
Query: 65 DQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQKPEE 124
D+IGLMV I+ NGFL+ IGG+ T++ Q+ V K I GV S PPH K EE
Sbjct: 64 DEIGLMVKYIDDNGFLKFTKIGGIYDPTILNQKVVVHGSKGDLI-GVLGSKPPHRMKEEE 122
Query: 125 RKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRIAVYT 184
+ K +++ +FIDIGAES+EEA EMGV IGT +++ + LGK+R AFDDR+
Sbjct: 123 KTKIIKYEDMFIDIGAESREEAIEMGVNIGTWVSFLSEVYDLGKNRLTGKAFDDRVGCAV 182
Query: 185 MLEVARQL--EDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGTPE 242
+LEV ++L ED VY V TVQEEVGL+GAR SAF I PD A+DVTIA D PG +
Sbjct: 183 LLEVMKRLSEEDIDCQVYAVGTVQEEVGLKGARVSAFKINPDVAIALDVTIAGDHPGIKK 242
Query: 243 HKQVTHLGKGTAIKIMD---RSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIH 299
LGKG + I+D R +I HP ++ ++ +++KY+I Q E+ GG TDA AIH
Sbjct: 243 EDAPVDLGKGPVVGIVDASGRGLIAHPKVLDMIKAVSEKYKIDVQWEVGEGGTTDATAIH 302
Query: 300 LTKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKALENIH 344
LT+ G+PTG +SVPARYIH+ EV+D+RD++ TV+L+ ++ ++
Sbjct: 303 LTREGIPTGVISVPARYIHTPVEVIDKRDLEKTVELVYNCIKEVN 347
>pir||A69157 endo-1,4-beta-glucanase - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621502|gb|AAB84943.1| (AE000827)
endo-1,4-beta-glucanase [Methanobacterium
thermoautotrophicum]
Length = 343
Score = 300 bits (761), Expect = 1e-80
Identities = 160/343 (46%), Positives = 224/343 (64%), Gaps = 9/343 (2%)
Query: 5 ELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMIAAHM 64
EL+K++ A G+SG+E +RD++ E++ +VDE++ D LGN+IA ++G GP +M+AAHM
Sbjct: 6 ELMKRLSVASGISGFEG-EVRDIIRSELEGHVDEIEEDSLGNIIAVKRGSGPSIMLAAHM 64
Query: 65 DQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKF-IYGVGASVPPHIQKPE 123
D+IGLMV +I+K GF+R + IGG+ + ++ Q VWI + + GV S PPH K
Sbjct: 65 DEIGLMVRHIDKKGFIRFSKIGGISDQMILNQA--VWIHGENGPVMGVIGSKPPHRMKAS 122
Query: 124 ERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRIAVY 183
ERKK D +FIDIGA S+E+AEE+ V +G IT+ L RF A D+RI
Sbjct: 123 ERKKVTTHDNMFIDIGASSREDAEEL-VAVGDPITFHAPYSELANSRFTGKALDNRIGCL 181
Query: 184 TMLEVARQLEDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGTPEH 243
M+EV +++E T A VY V TVQEEVGL+GA+TSAF + PD A+DVTIA D PG E
Sbjct: 182 VMVEVLKRVE-TGATVYGVGTVQEEVGLKGAKTSAFRLNPDMTLALDVTIAGDHPGMKEE 240
Query: 244 KQVTHLGKGTAIKIMD---RSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHL 300
+ L G AI + D R +I HP + WL E A++ +IP Q+E+ GG TDA AIHL
Sbjct: 241 EAPAKLEGGPAIILTDASGRGIITHPRVKDWLLETAREEDIPVQIEVSEGGTTDATAIHL 300
Query: 301 TKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKALENI 343
T+ G+P G +SVP RYIH+ + +D++ TV L+VKA+E +
Sbjct: 301 TREGIPAGVVSVPTRYIHTTVSMASMKDIEMTVDLLVKAIERL 343
>gi|11499384 endoglucanase (celM) [Archaeoglobus fulgidus]
>gi|7435574|pir||B69474 endoglucanase (celM) homolog -
Archaeoglobus fulgidus >gi|2648753|gb|AAB89455.1|
(AE000979) endoglucanase (celM) [Archaeoglobus fulgidus]
Length = 304
Score = 293 bits (741), Expect = 3e-78
Identities = 153/304 (50%), Positives = 202/304 (66%), Gaps = 10/304 (3%)
Query: 44 LGNVIAHRKGEGPKVMIAAHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWID 103
+GN+I + G P++M+AAHMD+IG V I+ GF+R+APIGG + +AQR ++
Sbjct: 1 MGNLICTKNGGEPEIMVAAHMDEIGFAVKYIDDKGFIRIAPIGGWFSQIALAQRVVLYGK 60
Query: 104 KDKFIYGVGASVPPHIQKPEERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRL 163
K +YGV PPH+ K EERKK E +F+DIGA SKEE EMG+ +GT + D +
Sbjct: 61 KK--VYGVIGCKPPHLMKDEERKKGIEIKDMFVDIGASSKEEVLEMGINVGTPVALDREI 118
Query: 164 ERLGKHRFVSIAFDDRIAVYTMLEVARQLEDTKADV--YFVATVQEEVGLRGARTSAFAI 221
L R AFD+R+ V M+E R+ KAD+ + VATVQEEVGL+GARTSAFAI
Sbjct: 119 VELANGRITGKAFDNRVGVAVMIEAVRR---AKADITIHAVATVQEEVGLKGARTSAFAI 175
Query: 222 EPDYGFAIDVTIAADVPGTPEHKQVTHLGKGTAIKIMD---RSVICHPTIVRWLEELAKK 278
EP A+D +AAD PG+ LGKG AI ++D R +I P ++RWL E A+K
Sbjct: 176 EPTAAIAVDTCVAADFPGSESAHMDVKLGKGAAITVIDASGRGLIASPKVLRWLTETAEK 235
Query: 279 YEIPYQLEILLGGGTDAGAIHLTKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVK 338
Y IPYQLE+ GG TDA AIHLTKAG+P G +SVPARYIHS EVVD +DV++ V+++ +
Sbjct: 236 YGIPYQLEVAEGGTTDATAIHLTKAGIPAGVVSVPARYIHSPVEVVDLKDVESAVEIVAR 295
Query: 339 ALEN 342
A+EN
Sbjct: 296 AIEN 299
>prf||2113327A endoglucanase [Clostridium thermocellum]
Length = 325
Score = 284 bits (720), Expect = 8e-76
Identities = 160/337 (47%), Positives = 220/337 (64%), Gaps = 14/337 (4%)
Query: 4 YELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMIAAH 63
++LLKK GVSG E IR+ +IEEIK+ VDE+KVD LGN+IA +KG+G K+M+AAH
Sbjct: 2 FDLLKKFTGIVGVSGNEE-EIREAIIEEIKECVDEIKVDTLGNLIAVKKGKGKKIMVAAH 60
Query: 64 MDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQKPE 123
MD+IG+MVT I+ GFLR + +GGV I QR K F GV +V + ++
Sbjct: 61 MDEIGVMVTYIDDKGFLRFSAVGGVSRYDCIGQRVK-------FKNGVVGAV--YYEEKL 111
Query: 124 ERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRIAVY 183
E K + +++IDIGA S+EEA +M V IG V + G G +S A D+R
Sbjct: 112 EDMKNLQLSKMYIDIGARSREEALKM-VNIGDVACFVGDAVLQGD-TVISKALDNRSGCA 169
Query: 184 TMLEVARQLEDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGTPEH 243
+++ ++L+ T ++YFV TVQEEVGLRGA+T+AF+I+PD A+DVT+ D P + H
Sbjct: 170 VVVKAIKELKKTDNEIYFVFTVQEEVGLRGAKTAAFSIKPDIAIAVDVTMTGDTPES--H 227
Query: 244 KQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHLTKA 303
G G AIK+ DRSVICHP + + LEE AK+ IPYQLEIL GG+D G+IHLT
Sbjct: 228 PMEVKCGGGPAIKVKDRSVICHPEVRKLLEESAKRNNIPYQLEILEAGGSDPGSIHLTAG 287
Query: 304 GVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKAL 340
G+P+GA+S+P RY+HS E D++ VKL+V+A+
Sbjct: 288 GIPSGAISIPVRYVHSPVETASMSDINNAVKLLVEAI 324
>sp|P55742|GUNM_CLOTM ENDOGLUCANASE M (EGM) (ENDO-1,4-BETA-GLUCANASE) (CELLULASE M)
Length = 330
Score = 284 bits (720), Expect = 8e-76
Identities = 160/337 (47%), Positives = 220/337 (64%), Gaps = 14/337 (4%)
Query: 4 YELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMIAAH 63
++LLKK GVSG E IR+ +IEEIK+ VDE+KVD LGN+IA +KG+G K+M+AAH
Sbjct: 7 FDLLKKFTGIVGVSGNEE-EIREAIIEEIKECVDEIKVDTLGNLIAVKKGKGKKIMVAAH 65
Query: 64 MDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQKPE 123
MD+IG+MVT I+ GFLR + +GGV I QR K F GV +V + ++
Sbjct: 66 MDEIGVMVTYIDDKGFLRFSAVGGVSRYDCIGQRVK-------FKNGVVGAV--YYEEKL 116
Query: 124 ERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRIAVY 183
E K + +++IDIGA S+EEA +M V IG V + G G +S A D+R
Sbjct: 117 EDMKNLQLSKMYIDIGARSREEALKM-VNIGDVACFVGDAVLQGD-TVISKALDNRSGCA 174
Query: 184 TMLEVARQLEDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGTPEH 243
+++ ++L+ T ++YFV TVQEEVGLRGA+T+AF+I+PD A+DVT+ D P + H
Sbjct: 175 VVVKAIKELKKTDNEIYFVFTVQEEVGLRGAKTAAFSIKPDIAIAVDVTMTGDTPES--H 232
Query: 244 KQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHLTKA 303
G G AIK+ DRSVICHP + + LEE AK+ IPYQLEIL GG+D G+IHLT
Sbjct: 233 PMEVKCGGGPAIKVKDRSVICHPEVRKLLEESAKRNNIPYQLEILEAGGSDPGSIHLTAG 292
Query: 304 GVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKAL 340
G+P+GA+S+P RY+HS E D++ VKL+V+A+
Sbjct: 293 GIPSGAISIPVRYVHSPVETASMSDINNAVKLLVEAI 329
>dbj|BAB06851.1| (AP001517) endo-1,4-beta-glucanase [Bacillus halodurans]
Length = 361
Score = 265 bits (671), Expect = 4e-70
Identities = 150/345 (43%), Positives = 219/345 (63%), Gaps = 9/345 (2%)
Query: 5 ELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKG--EGPKVMIAA 62
++LK++ +A G+ G E RDV+ + I+ + DEV DKLG+++A + G +GPK+M+A
Sbjct: 9 QMLKELTDANGIPGNE-REARDVMRKHIEPFADEVTTDKLGSLVAKKVGKEDGPKIMVAG 67
Query: 63 HMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQKP 122
H+D+IG MVT+I+ GFLR +GG + ++AQR V K I GV S PPHI
Sbjct: 68 HLDEIGFMVTSIDDKGFLRFQTVGGWWEQVMLAQRVTVMTKKGN-IPGVIGSKPPHILPA 126
Query: 123 EERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVIT--WDGRLERLGKHRFVSIAFDDRI 180
E RKK + +FIDIG SKEEA E GVR G I D + + K+ ++ A+D+RI
Sbjct: 127 EARKKPVDKKDMFIDIGVASKEEALEFGVRPGDSIVPVCDFTVMKNEKY-LMAKAWDNRI 185
Query: 181 AVYTMLEVARQLEDTKAD--VYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVP 238
++V R+L+ T VY V TVQEEVGLRGARTSA I+PD GF +DV IA D P
Sbjct: 186 GCAIAIDVLRELKGTNHPNVVYGVGTVQEEVGLRGARTSAHYIKPDIGFGVDVGIAGDTP 245
Query: 239 GTPEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAI 298
G E + + +G+G I + D S++ H + ++ ++A ++ IPYQ + + GGGTD+GAI
Sbjct: 246 GVTEKEALAKMGEGPQIVLYDASMVSHKGLRDFVTDIADEHNIPYQFDAMAGGGTDSGAI 305
Query: 299 HLTKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKALENI 343
HLT GVP +++V RYIHS+A ++ D + TVKL+V+ ++ +
Sbjct: 306 HLTANGVPALSITVATRYIHSHASILHRDDYENTVKLIVEVIKKL 350
>gb|AAD47606.1|AF146565_2 (AF146565) endoglucanase [Methanococcus maripaludis]
Length = 321
Score = 264 bits (668), Expect = 1e-69
Identities = 146/322 (45%), Positives = 203/322 (62%), Gaps = 9/322 (2%)
Query: 2 VNYELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMIA 61
+NY LK + G+SG E IR+ + +E++ Y D ++ DK GN+IA + GPK+MIA
Sbjct: 4 LNY--LKILATEKGISGRED-NIREYMKKELEKYCDSIETDKFGNLIAKKGSTGPKIMIA 60
Query: 62 AHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQK 121
+HMD+IGLMV I+ GFL+ IGG++ + L+ Q+ V + I GV S PPH K
Sbjct: 61 SHMDEIGLMVKYIDDKGFLKFTKIGGINDQMLLNQKVIVH-GNNGDIVGVLGSKPPHKMK 119
Query: 122 PEERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRIA 181
ER K + +FIDIGA+++EEAE+MGV IGT +++ ++LG + +FD+R
Sbjct: 120 ESERNKLISAEHMFIDIGAKNREEAEKMGVEIGTAMSFKSEFDKLGGNVVSCKSFDNRAG 179
Query: 182 VYTMLEVARQLE--DTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPG 239
+L+ L+ D K VY V TVQEEVG++GA+TSAF I PD FA+DVTI D PG
Sbjct: 180 CAVVLKTMELLKDMDLKCQVYAVGTVQEEVGVKGAKTSAFGINPDVAFALDVTICGDHPG 239
Query: 240 TPEHKQVTHLGKGTAIKIMD---RSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAG 296
LGKG I+D R +I HPT++R + +++K EIP Q E+ GG TDA
Sbjct: 240 IKLEDAPVELGKGPVATIVDASGRGIITHPTVLRMVRDVSKADEIPVQYEVGEGGTTDAT 299
Query: 297 AIHLTKAGVPTGALSVPARYIH 318
AIHLT+ G+PTG +SVP+RYIH
Sbjct: 300 AIHLTRDGIPTGVISVPSRYIH 321
>pir||A69984 endo-1,4-beta-glucanase homolog ysdC - Bacillus subtilis
>gi|1770012|emb|CAA99585.1| (Z75208) hypothetical
protein [Bacillus subtilis] >gi|2635347|emb|CAB14842.1|
(Z99118) similar to endo-1,4-beta-glucanase [Bacillus
subtilis]
Length = 361
Score = 251 bits (634), Expect = 1e-65
Identities = 141/343 (41%), Positives = 209/343 (60%), Gaps = 7/343 (2%)
Query: 6 LLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKG--EGPKVMIAAH 63
+LK + +A G+ G E +R V+ I+ + DEV D+LG++IA + G GPK+MIA H
Sbjct: 10 MLKDLTDAKGIPGNE-REVRQVMKSYIEPFADEVTTDRLGSLIAKKTGAENGPKIMIAGH 68
Query: 64 MDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQKPE 123
+D++G MVT I GF+R +GG + ++AQR + + K I GV S PPHI PE
Sbjct: 69 LDEVGFMVTQITDKGFIRFQTVGGWWAQVMLAQRVTI-VTKKGEITGVIGSKPPHILSPE 127
Query: 124 ERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFV-SIAFDDRIAV 182
RKK+ E +FIDIGA S+EEA E GV G +I + +F+ + A+D+RI
Sbjct: 128 ARKKSVEIKDMFIDIGASSREEALEWGVLPGDMIVPHFEFTVMNNEKFLLAKAWDNRIGC 187
Query: 183 YTMLEVARQLEDTKAD--VYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGT 240
++V R L++T VY V TVQEEVGLRGA+T+A I+PD F +DV IA D PG
Sbjct: 188 AIAIDVLRNLQNTDHPNIVYGVGTVQEEVGLRGAKTAAHTIQPDIAFGVDVGIAGDTPGI 247
Query: 241 PEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHL 300
E + + +GKG I + D S++ H + + A++ IPYQ + + GGGTD+GAIHL
Sbjct: 248 SEKEAQSKMGKGPQIIVYDASMVSHKGLRDAVVATAEEAGIPYQFDAIAGGGTDSGAIHL 307
Query: 301 TKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKALENI 343
T GVP ++++ RYIH++A ++ D + VKL+ + ++ +
Sbjct: 308 TANGVPALSITIATRYIHTHAAMLHRDDYENAVKLITEVIKKL 350
>sp|P32153|FRVX_ECOLI PUTATIVE FRV OPERON PROTEIN FRVX >gi|541108|pir||S40842 probable
frv operon protein FrvX - Escherichia coli
>gi|305002|gb|AAB03031.1| (L19201) ORF_f356 [Escherichia
coli] >gi|1790332|gb|AAC76880.1| (AE000465) frv operon
protein [Escherichia coli K12]
Length = 356
Score = 224 bits (566), Expect = 9e-58
Identities = 120/335 (35%), Positives = 196/335 (57%), Gaps = 1/335 (0%)
Query: 2 VNYELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMIA 61
+N ELL+++ EA VSG E +RD++I ++ V+E+ D LG+ +A + +GPKV +
Sbjct: 1 MNIELLQQLCEASAVSGDE-QEVRDILINTLEPCVNEITFDGLGSFVARKGNKGPKVAVV 59
Query: 62 AHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQK 121
HMD++G MVT+I+++GFLR IGG ++++ R + K I GV SV PH
Sbjct: 60 GHMDEVGFMVTHIDESGFLRFTTIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALT 119
Query: 122 PEERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRIA 181
+++++ +D++FIDIGA S+EE E+ GV IG I+ + G+ + V A D+RI
Sbjct: 120 EKQKQQPLSFDEMFIDIGANSREEVEKRGVEIGNFISPEANFACWGEDKVVGKALDNRIG 179
Query: 182 VYTMLEVARQLEDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGTP 241
M E+ + + + + +Y V +V+EEVGLRGA+TSA I+PD +D +A DVPG
Sbjct: 180 CAMMAELLQTVNNPEITLYGVGSVEEEVGLRGAQTSAEHIKPDVVIVLDTAVAGDVPGID 239
Query: 242 EHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHLT 301
K LG+G + + D+ + +V L+ A ++P Q + G TD G ++
Sbjct: 240 NIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNVM 299
Query: 302 KAGVPTGALSVPARYIHSNAEVVDERDVDATVKLM 336
G P AL +P RY+H+N+ ++ + D +A + L+
Sbjct: 300 GGGRPVVALCLPTRYLHANSGMISKADYEALLTLI 334
>pir||D72301 endoglucanase - Thermotoga maritima (strain MSB8)
>gi|4981592|gb|AAD36127.1|AE001765_6 (AE001765)
endoglucanase [Thermotoga maritima]
Length = 331
Score = 220 bits (554), Expect = 2e-56
Identities = 127/337 (37%), Positives = 208/337 (61%), Gaps = 11/337 (3%)
Query: 5 ELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMIAAHM 64
EL++K+ EA G SG E +R +++EE++ ++D ++D LGN+I + KV++ AH+
Sbjct: 3 ELIRKLTEAFGPSGREE-EVRSIILEELEGHIDGHRIDGLGNLIVWKGSGEKKVILDAHI 61
Query: 65 DQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQKPEE 124
D+IG++VTN++ GFL + P+GGV P L+ +R + + GV ++ +E
Sbjct: 62 DEIGVVVTNVDDKGFLTIEPVGGVSPYMLLGKRIRF----ENGTIGVVGMEGETTEERQE 117
Query: 125 RKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWD-GRLERLGKHRFVSIAFDDRIAVY 183
+ +D++FIDIGA S+EEA++M IG+ +D G +E GK +VS A DDRI
Sbjct: 118 NVRKLSFDKLFIDIGANSREEAQKM-CPIGSFGVYDSGFVEVSGK--YVSKAMDDRIGCA 174
Query: 184 TMLEVARQLEDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGTPEH 243
++EV ++++ +Y V +VQEEVGL GA + + + D AIDVT +AD P +
Sbjct: 175 VIVEVFKRIKPA-VTLYGVFSVQEEVGLVGASVAGYGVPADEAIAIDVTDSADTPKAIK- 232
Query: 244 KQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHLTKA 303
+ L G A+K+ DR+ I I+ L E+A+K++I YQ+E+L GGT+A T+
Sbjct: 233 RHAMRLSGGPALKVKDRASISSKRILENLIEIAEKFDIKYQMEVLTFGGTNAMGYQRTRE 292
Query: 304 GVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKAL 340
G+P+ +S+P RY+HS +E++ DV+ATV L+++ L
Sbjct: 293 GIPSATVSIPTRYVHSPSEMIAPDDVEATVDLLIRYL 329
>dbj|BAB06976.1| (AP001518) endo-1,4-beta-glucanase [Bacillus halodurans]
Length = 357
Score = 215 bits (542), Expect = 6e-55
Identities = 129/341 (37%), Positives = 202/341 (58%), Gaps = 10/341 (2%)
Query: 6 LLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKG--EGPKVMIAAH 63
L K + E G G+E IR V E++ Y +E+ D+LG++ ++G +GPKVM+A H
Sbjct: 8 LFKTLTELQGAPGFEH-HIRRFVRGELEKYTNEIVQDRLGSIFGVKRGNEQGPKVMVAGH 66
Query: 64 MDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQKPE 123
MD++G MVT+I + G +R +GG + L+AQR ++ D+ I GV S PPH+ +
Sbjct: 67 MDEVGFMVTSINEKGLIRFQTLGGWWSQVLLAQRVQIMTDEGPVI-GVIGSTPPHLLEEA 125
Query: 124 ERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERL-GKHRFVSIAFDDRIAV 182
+RKK + ++IDIGA+ KE+A+++G++ G I L + + ++ A+D+R V
Sbjct: 126 QRKKPMDVKNMYIDIGADDKEDAQKIGIKPGQQIVPICPFTPLANEKKIMAKAWDNRYGV 185
Query: 183 YTMLEVARQL--EDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGT 240
+E+ ++L E T +Y ATVQEEVGLRGA TSA IEPD +A+D + A D T
Sbjct: 186 GLAIELLKELQGETTPNILYSGATVQEEVGLRGAATSAQMIEPDIFYALDASPAND--AT 243
Query: 241 PEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHL 300
LGKG ++I DR+++ H I ++ + A+ IPYQ + GGTDAG +HL
Sbjct: 244 AGKDAFGQLGKGALVRIYDRTMVTHRGIRDFVLDTAETENIPYQF-FISQGGTDAGRVHL 302
Query: 301 TKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKALE 341
+ GVP+ + + +RYIH+ A ++ D A L+VK ++
Sbjct: 303 SGNGVPSAVIGICSRYIHTAASIIHVDDYAAAKALLVKLVK 343
>pir||B69998 endo-1,4-beta-glucanase homolog ytoP - Bacillus subtilis
>gi|2293210|gb|AAC00288.1| (AF008220) YtoP [Bacillus
subtilis] >gi|2635470|emb|CAB14964.1| (Z99119) similar
to endo-1,4-beta-glucanase [Bacillus subtilis]
Length = 357
Score = 214 bits (540), Expect = 1e-54
Identities = 118/338 (34%), Positives = 205/338 (59%), Gaps = 10/338 (2%)
Query: 6 LLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKG--EGPKVMIAAH 63
L + + + PG G E +R + +E+ Y D++ D+LG+V R+G + P++M+A H
Sbjct: 8 LFQTLTQLPGAPGNEHQ-VRAFMKQELAKYADDIVQDRLGSVFGVRRGAEDAPRIMVAGH 66
Query: 64 MDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQKPE 123
MD++G MVT+I NG LR +GG + L+AQR ++ D + GV +S+PPH+
Sbjct: 67 MDEVGFMVTSITDNGLLRFQTLGGWWSQVLLAQRVEIQTDNGP-VPGVISSIPPHLLTDA 125
Query: 124 ERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHR-FVSIAFDDRIAV 182
+R + + + IDIGA+ KE+A ++G+R G I + + +S A+D+R
Sbjct: 126 QRNRPMDIKNMMIDIGADDKEDAIKIGIRPGQQIVPVCPFTTMANEKKILSKAWDNRYGC 185
Query: 183 YTMLEVARQL--EDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGT 240
+E+ ++L ++ +Y ATVQEEVGLRGA+T++ I+PD FA+D + A D+ G
Sbjct: 186 GLSIELLKELHGKELPNTLYAGATVQEEVGLRGAQTASHMIKPDLFFALDASPANDMSG- 244
Query: 241 PEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHL 300
+ + LGKG ++I+DR+ + H + ++ ++A+ ++IPYQ + GGGTDAG +H+
Sbjct: 245 -DKNEFGQLGKGFLLRILDRTTVMHRGMREFVLDMAETHDIPYQY-FVSGGGTDAGKVHI 302
Query: 301 TKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVK 338
+ +GVP+ + + +RYIH+NA ++ D A ++++K
Sbjct: 303 SNSGVPSAVIGICSRYIHTNATIIHIDDYAAAKEMLIK 340
>pir||C72301 endoglucanase - Thermotoga maritima (strain MSB8)
>gi|4981591|gb|AAD36126.1|AE001765_5 (AE001765)
endoglucanase [Thermotoga maritima]
Length = 339
Score = 202 bits (509), Expect = 4e-51
Identities = 126/338 (37%), Positives = 186/338 (54%), Gaps = 13/338 (3%)
Query: 7 LKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGE--GPKVMIAAHM 64
LK++ PGVSG E +RD + +I+ VD + D LGN+IA ++G K++++AHM
Sbjct: 3 LKELSMMPGVSGDEGK-VRDFIKSKIEGLVDNLYTDVLGNLIALKRGRDSSKKLLVSAHM 61
Query: 65 DQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQKPEE 124
D++G +V+ IEK+G + P+GGVDP+ L + +V K + GV P H+Q+ EE
Sbjct: 62 DEVGFVVSKIEKDGKVSFLPVGGVDPRILPGKVVQV-----KNLKGVIGYRPIHLQRDEE 116
Query: 125 RKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITW-DGRLERLGKHRFVSIAFDDRIAVY 183
P ++ + ID G S +EA++ V IG +++ +E+ G R V AFDDR
Sbjct: 117 NTP-PRFENLRIDFGFSSADEAKKY-VSIGDYVSFVSDYIEKNG--RAVGKAFDDRAGCS 172
Query: 184 TMLEVARQLEDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGTPEH 243
+++V D YFV TVQEE GLRG+ ++P ++ T A D P E
Sbjct: 173 VLIDVLESGVSPAYDTYFVFTVQEETGLRGSAVVVEQLKPTCAIVVETTTAGDNPELEER 232
Query: 244 KQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHLTKA 303
K THLG G AI R + I + + + AK +IP+Q++ GGTDAG T
Sbjct: 233 KWATHLGDGPAITFYHRGYVIPKEIFQTIVDTAKNNDIPFQMKRRTAGGTDAGRYARTAY 292
Query: 304 GVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKALE 341
GVP G +S PARYIHS ++D D + T KL+ +E
Sbjct: 293 GVPAGVISTPARYIHSPNSIIDLNDYENTKKLIKVLVE 330
>pir||D82912 Endo-1,4-beta-glucanase UU280 [imported] - Ureaplasma urealyticum
>gi|6899252|gb|AAF30689.1|AE002124_11 (AE002124)
Endo-1,4-beta-glucanase [Ureaplasma urealyticum]
Length = 363
Score = 192 bits (484), Expect = 4e-48
Identities = 117/320 (36%), Positives = 175/320 (54%), Gaps = 8/320 (2%)
Query: 32 IKDYVDEVKVDKLGNVIAHR--KGEGPKVMIAAHMDQIGLMVTNIEKNGFLRVAPIGGVD 89
+KD + + D LG++I + +GPK++IA HMD++G +V I NG L ++ +GGV
Sbjct: 37 LKDAGVDYERDNLGSIIFKKTNSNKGPKILIATHMDEVGFVVQQILDNGQLLLSMVGGVW 96
Query: 90 PKTLIAQRFKVWIDKDKFIYGVGASVPPHIQKPEERKKAPEWDQIFIDIGAESKEEAEEM 149
P I KV++D+ + GV HI +PE R KA ++F+D G SK++A ++
Sbjct: 97 PNIAIGSVAKVYVDEQRQYTGVFGHTSIHILEPEARSKAVPVKELFVDCGFNSKQQAIDL 156
Query: 150 GVRIGTVITWDG-RLERLGKHRFVSIAFDDRIAVYTMLEVARQLED--TKADVYFVATVQ 206
G+ IGT + +G L ++ V A D+R++V + + L+D YF ATVQ
Sbjct: 157 GIEIGTEVYMEGPTLNFYDENYIVGKAVDNRVSVAVLDLLIHSLKDKVIPNQTYFAATVQ 216
Query: 207 EEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGTPEHKQVTHLGKGTAIKIMDRSVICHP 266
EEVGLRGA+T ++PD G ID T + D PE T L G I+I D + +P
Sbjct: 217 EEVGLRGAKTVVSKVKPDIGIVIDTTTSHDTYKCPEGD--TKLNDGVCIRIKDGGTLVNP 274
Query: 267 TIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHL-TKAGVPTGALSVPARYIHSNAEVVD 325
+V++ EELA K+ IP + GGGTDA + GV T LS+P RY+H+ V
Sbjct: 275 KLVKYFEELAIKHNIPLYKYVARGGGTDAEELQYGPNGGVLTIGLSIPQRYLHAPIGVAT 334
Query: 326 ERDVDATVKLMVKALENIHE 345
+D+ A L+ + LE E
Sbjct: 335 VKDIKAAFDLVREFLEVFDE 354
>pir||A72609 probable deblocking aminopeptidase APE1335 - Aeropyrum pernix
(strain K1) >gi|5105013|dbj|BAA80327.1| (AP000061) 339aa
long hypothetical deblocking aminopeptidase [Aeropyrum
pernix]
Length = 339
Score = 189 bits (475), Expect = 4e-47
Identities = 121/337 (35%), Positives = 185/337 (53%), Gaps = 13/337 (3%)
Query: 5 ELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMIAAHM 64
E L+++V PG SG+E L +R VV+ +++ + VD+LGNV+ + G P+++ AAHM
Sbjct: 3 ETLRELVFTPGPSGFEDL-VRSVVVSRLRELGLDPVVDELGNVVVNPSGGEPRLLAAAHM 61
Query: 65 DQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQKPE- 123
D++G ++T + +G L +GG+D + L Q ++ +D I GV PPH+Q
Sbjct: 62 DELGFVITGVGDDGLLAFRKLGGIDDRILPGQHVEILLDGGARIEGVIGITPPHLQLDRG 121
Query: 124 ERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERL-GKHRFVSIAFDDRIAV 182
E +K W ++ IDIGA+S+ EAEE+GV+ + L G S FDDR V
Sbjct: 122 EAEKPLRWHELRIDIGAQSRAEAEELGVKPLQPAVFKKHWSTLAGGRALASRGFDDRAGV 181
Query: 183 YTMLEVARQLEDTKADVYFVA---TVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPG 239
+LE+A+++ + + D +A TVQEEVGLRGA A ++P A+D T+A P
Sbjct: 182 ALLLELAKRIAEGRVDAGGIALAWTVQEEVGLRGASYVASRMKPKAFLAVD-TMACCHPA 240
Query: 240 TPEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIH 299
H T G G ++ +D I +V LEE A+ + Q GG TDA A
Sbjct: 241 VTGH---TRPGGGPVVRALDNQHITPRWLVELLEEAARSAGLELQY-ATAGGTTDAAAFQ 296
Query: 300 LTKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLM 336
T GVP+ A+ +P +Y HS AEV+ D++ +KL+
Sbjct: 297 RT--GVPSAAIGIPLKYTHSTAEVLYLSDLEGALKLL 331
>pir||E75067 aminopeptidase m42 PAB2375 [imported] - Pyrococcus abyssi (strain
Orsay) >gi|5458947|emb|CAB50434.1| (AJ248287)
aminopeptidase from family M42 [Pyrococcus abyssi]
Length = 331
Score = 188 bits (472), Expect = 1e-46
Identities = 123/334 (36%), Positives = 181/334 (53%), Gaps = 16/334 (4%)
Query: 5 ELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMIAAHM 64
E LK+ + PG+SGYE IR+ +IEEIKD+ D KVD +GN+I +++ AHM
Sbjct: 5 EELKEFTQIPGISGYEER-IRERIIEEIKDFAD-YKVDAIGNLIVELGEGDERLLFMAHM 62
Query: 65 DQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQKPEE 124
D+IGL++T I +G LR +GG+D + L + V + +DK I GV ++PPH+ +
Sbjct: 63 DEIGLLITGITNDGKLRFRKVGGIDDRLLYGRHVSV-VTEDKIIDGVIGAIPPHLSLGKG 121
Query: 125 RKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRIAVYT 184
+ P W ++ IDIGAESKEEA E+ V+ + L + + DDR V
Sbjct: 122 KDVIP-WHELVIDIGAESKEEALEL-VKPLDFAVFKKHFSVLNGRYVSTRSLDDRFGVVA 179
Query: 185 MLEVARQL--EDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGTPE 242
++E + L D V F TVQEE+GL+GAR A P+Y FAID + E
Sbjct: 180 LIEAIKDLVDHDLGGKVVFAFTVQEEIGLKGARFLANRYAPEYAFAIDSFACCN-----E 234
Query: 243 HKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHLTK 302
LG G I+ +D S I + R + +A+K +IP Q+ + GGGTDA
Sbjct: 235 LTGDVKLGGGPVIRAVDNSAIYSRDLARKVLSIAEKNKIPIQIGV-TGGGTDASVFQERC 293
Query: 303 AGVPTGALSVPARYIHSNAEVVDERDVDATVKLM 336
+ ALSVP +Y+HS E++ D++ +KL+
Sbjct: 294 KAL---ALSVPIKYLHSEVEMLQINDLENLIKLI 324
>pir||S56530 hypothetical protein f383 - Escherichia coli
>gi|537146|gb|AAA97201.1| (U14003) ORF_f383 [Escherichia
coli]
Length = 383
Score = 186 bits (467), Expect = 4e-46
Identities = 115/344 (33%), Positives = 185/344 (53%), Gaps = 15/344 (4%)
Query: 5 ELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGP---KVMIA 61
E L +++ +SG+E + DV++ E + EV D+LGNV+A + P ++MI
Sbjct: 17 ETLFSLLQHNAISGHEN-AVADVMLCEFRRQAKEVWRDRLGNVVARYGSDKPDALRLMIF 75
Query: 62 AHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQK 121
AHMD++G MV IE +GFLR +GG T+ + DK + +G H K
Sbjct: 76 AHMDEVGFMVRKIEPSGFLRFERVGGPAQVTMAGSIVTLTGDKGPVMGCIGIK-SYHFAK 134
Query: 122 PEERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRIA 181
+ER ++P D+++IDIGA+ K++A MG+++GT +T + L S A DDR+
Sbjct: 135 ADERTQSPSVDKLWIDIGAKDKDDAIRMGIQVGTPVTLYNPPQLLANDLVCSKALDDRLG 194
Query: 182 VYTMLEVARQLEDTKAD--VYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPG 239
+L VA + + D VY VA+VQEE +RG ++PD ID+T + D P
Sbjct: 195 CTALLGVADAISTMELDIAVYLVASVQEEFNIRGIVPVLRRVKPDLAIGIDITPSCDTPD 254
Query: 240 TPEHKQVTHLGKGTAIKIMD-------RSVICHPTIVRWLEELAKKYEIPYQLEILLGGG 292
++ +V + +G I ++ +I P ++R LE+ A ++ IP Q E+ G
Sbjct: 255 LHDYSEV-RINQGVGITCLNYHGRGTLAGLITPPRLIRMLEQTALEHNIPVQREVAPGVI 313
Query: 293 TDAGAIHLTKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLM 336
T+ G I + + G+P +LS+P RY HS AEV RD+ ++L+
Sbjct: 314 TETGYIQVEQDGIPCASLSIPCRYTHSPAEVASLRDLTDCIRLL 357
>sp|P39366|SGCX_ECOLI PUTATIVE SGC REGION PROTEIN SGCX >gi|7435572|pir||C65244
hypothetical 41.7 kD protein in fecI-fimB intergenic
region - Escherichia coli (strain K-12)
>gi|2367373|gb|AAC77261.1| (AE000501) putative
lyase/synthase [Escherichia coli K12]
Length = 383
Score = 185 bits (466), Expect = 5e-46
Identities = 115/344 (33%), Positives = 185/344 (53%), Gaps = 15/344 (4%)
Query: 5 ELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGP---KVMIA 61
E L +++ +SG+E + DV++ E + EV D+LGNV+A + P ++MI
Sbjct: 17 ETLFSLLQHNAISGHEN-AVADVMLCEFRRQAKEVWRDRLGNVVARYGSDKPDALRLMIF 75
Query: 62 AHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQK 121
AHMD++G MV IE +GFLR +GG T+ + DK + +G H K
Sbjct: 76 AHMDEVGFMVRKIEPSGFLRFERVGGPAQVTMAGSIVTLTGDKGPVMGCIGIK-SYHFAK 134
Query: 122 PEERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRIA 181
+ER ++P D+++IDIGA+ K++A MG+++GT +T + L S A DDR+
Sbjct: 135 GDERTQSPSVDKLWIDIGAKDKDDAIRMGIQVGTPVTLYNPPQLLANDLVCSKALDDRLG 194
Query: 182 VYTMLEVARQLEDTKAD--VYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPG 239
+L VA + + D VY VA+VQEE +RG ++PD ID+T + D P
Sbjct: 195 CTALLGVADAISTMELDIAVYLVASVQEEFNIRGIVPVLRRVKPDLAIGIDITPSCDTPD 254
Query: 240 TPEHKQVTHLGKGTAIKIMD-------RSVICHPTIVRWLEELAKKYEIPYQLEILLGGG 292
++ +V + +G I ++ +I P ++R LE+ A ++ IP Q E+ G
Sbjct: 255 LHDYSEV-RINQGVGITCLNYHGRGTLAGLITPPRLIRMLEQTALEHNIPVQREVAPGVI 313
Query: 293 TDAGAIHLTKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLM 336
T+ G I + + G+P +LS+P RY HS AEV RD+ ++L+
Sbjct: 314 TETGYIQVEQDGIPCASLSIPCRYTHSPAEVASLRDLTDCIRLL 357
>pir||B71165 hypothetical protein PH0519 - Pyrococcus horikoshii
>gi|3256924|dbj|BAA29607.1| (AP000002) 332aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 332
Score = 183 bits (461), Expect = 2e-45
Identities = 130/335 (38%), Positives = 182/335 (53%), Gaps = 18/335 (5%)
Query: 5 ELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGP-KVMIAAH 63
E LKK + PG+SGYE IR+ +I EIKD+ D KVD +GN+I GEG +++ AH
Sbjct: 6 EKLKKFTQIPGISGYEER-IREEIIREIKDFAD-YKVDAIGNLIVEL-GEGEERILFMAH 62
Query: 64 MDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQKPE 123
MD+IGL++T I G LR +GG+D + L + V +K + GV + PPH+
Sbjct: 63 MDEIGLLITGITDEGKLRFRKVGGIDDRLLYGRHVNVVTEKG-ILDGVIGATPPHLSLER 121
Query: 124 ERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRIAVY 183
++ P W + IDIGAESKEEA E+ V+ + L + DDR V
Sbjct: 122 DKSVIP-WYDLVIDIGAESKEEALEL-VKPLDFAVFKKHFSVLNGKYVSTRGLDDRFGVV 179
Query: 184 TMLEVARQLEDTKAD--VYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGTP 241
++E + L D + + V F TVQEEVGL+GA+ A P Y FAID + A P T
Sbjct: 180 ALIEAIKDLVDHELEGKVIFAFTVQEEVGLKGAKFLANHYYPQYAFAID-SFACCSPLTG 238
Query: 242 EHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAGAIHLT 301
+ K LGKG I+ +D S I + R + +A+K I Q+ + GGGTDA A
Sbjct: 239 DVK----LGKGPVIRAVDNSAIYSRDLARKVWSIAEKNGIEIQIGV-TGGGTDASAF--- 290
Query: 302 KAGVPTGALSVPARYIHSNAEVVDERDVDATVKLM 336
+ T ALSVP +Y+HS E + D++ VKL+
Sbjct: 291 QDRSKTLALSVPIKYLHSEVETLHLNDLEKLVKLI 325
>pir||E75542 probable endoglucanase - Deinococcus radiodurans (strain R1)
>gi|6457903|gb|AAF09817.1|AE001885_1 (AE001885)
endoglucanase, putative [Deinococcus radiodurans]
Length = 375
Score = 183 bits (459), Expect = 3e-45
Identities = 121/349 (34%), Positives = 191/349 (54%), Gaps = 14/349 (4%)
Query: 2 VNYELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGE-GPKVMI 60
+N + L +++ SG E DV +E + V D G+V A E GP + +
Sbjct: 30 INRDFLFELLSQAAPSGAERRAA-DVWKKEAATFA-RVSEDHYGSVYAELGPENGPAIAL 87
Query: 61 AAHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQ 120
H+D+IGL+V++++ G L V +GG DP+ L+ QR ++ + GV H+
Sbjct: 88 MGHLDEIGLIVSHVDDKGHLSVLGVGGWDPQVLVGQRIRLLAPGGDLL-GVVGKKAIHVM 146
Query: 121 KPEERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRI 180
+ EER KA + + ++ID+G ++ E + V +GT + +G ++ VS A D+R+
Sbjct: 147 EAEERTKASKLEDLWIDVGLDADEVKAK--VPVGTYGVIEQGPVMVG-NKVVSRALDNRV 203
Query: 181 AVYTMLEVARQLEDT--KADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVP 238
+ +LE R L+D K + V T QEE+G+ GA+TSA+ ++P G A+DVT D P
Sbjct: 204 GAFIVLEALRALKDVELKHRIVAVGTSQEEIGVFGAQTSAYRLDPVAGIAVDVTHETDQP 263
Query: 239 GTPEHKQ-VTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEIL-LGGGTDAG 296
G E K V G G + + + +PT++R L E A + IPY L GTDA
Sbjct: 264 GVSEKKYGVAPFGSGANLSV---GPMTNPTLLRQLTEAAGRENIPYTLSASGRYTGTDAD 320
Query: 297 AIHLTKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKALENIHE 345
A+ L +AGVPTG +S+P RY+HS +E+VDERDV A + ++ + + E
Sbjct: 321 ALTLVRAGVPTGVVSIPNRYMHSPSEMVDERDVKACIDILAAWIRGLEE 369
>pir||E65012 hypothetical protein b2384 - Escherichia coli (strain K-12)
>gi|1788727|gb|AAC75443.1| (AE000326) orf, hypothetical
protein [Escherichia coli K12]
>gi|1799795|dbj|BAA16254.1| (D90868) PUTATIVE FRV OPERON
PROTEIN FRVX. [Escherichia coli]
Length = 345
Score = 182 bits (458), Expect = 4e-45
Identities = 110/347 (31%), Positives = 183/347 (52%), Gaps = 19/347 (5%)
Query: 2 VNYELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAH-RKGEGPKVMI 60
++ LLK + EA ++ E +R +++EE EV+ D LG+V+ + GPKVMI
Sbjct: 1 MDLSLLKALSEADAIASSE-QEVRQILLEEADRLQKEVRFDGLGSVLIRLNESTGPKVMI 59
Query: 61 AAHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQ 120
AHMD++G MV +I + G + V P+G V Q ++ ++ I G+
Sbjct: 60 CAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGL--------- 110
Query: 121 KPEERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRI 180
+ ++ + + +DIGA S +E + G+R G +T+D + L R + AFDDR+
Sbjct: 111 -LDGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRL 169
Query: 181 AVYTMLEVARQLEDTK--ADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADV- 237
Y ++ + R+L D + A+V+ VA+ EEVGLRG +T+ A+ PD +D A
Sbjct: 170 GCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNF 229
Query: 238 -PGTPEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDAG 296
G H+Q+ G G + + D+S+I P + W+E +A + +P Q ++ GGTD G
Sbjct: 230 DYGAANHRQI---GNGPMLVLSDKSLIAPPKLTAWVETVAAEIGVPLQADMFSNGGTDGG 286
Query: 297 AIHLTKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKALENI 343
A+HLT GVPT + R+ H A + D RD+ +L+ ++ +
Sbjct: 287 AVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMQQLLSALIQRL 333
>pir||B72301 endoglucanase - Thermotoga maritima (strain MSB8)
>gi|4981590|gb|AAD36125.1|AE001765_4 (AE001765)
endoglucanase [Thermotoga maritima]
Length = 334
Score = 171 bits (430), Expect = 8e-42
Identities = 116/340 (34%), Positives = 186/340 (54%), Gaps = 29/340 (8%)
Query: 5 ELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEG-PKVMIAAH 63
+LL ++ G SGYE + + I+ +VDE K + G++I ++KG+G K+ AH
Sbjct: 7 KLLMELSNLDGPSGYE-TNVVSYIKSVIEPFVDEAKTTRHGSLIGYKKGKGIGKLAFFAH 65
Query: 64 MDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQKPE 123
+D+IG +V+ +E F R+ P+GGVDPK + A + +++ K+ GV + PH+Q E
Sbjct: 66 VDEIGFVVSKVEGQ-FARLEPVGGVDPKVVYASKVRIYT-KNGIERGVIGMLAPHLQDSE 123
Query: 124 ERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGR-LERLGKHRFVSIAFDDRIAV 182
RKK +D+IF+D+ ++ VR+G + D E GK V A D+R +
Sbjct: 124 SRKKVLTYDEIFVDLSLCERD------VRVGDIAVIDQTAFETNGK--VVGKALDNRASC 175
Query: 183 YTMLEVARQLE--DTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGT 240
+++V L+ D DVY V +VQEE G GA T A+ I PD +DVT A++
Sbjct: 176 GVLVKVLEFLKRYDHPWDVYVVFSVQEETGCLGALTGAYEINPDAAIVMDVTFASE---- 231
Query: 241 PEHKQVTHLGKGTAI---KIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLG-GGTDAG 296
P LGKG I ++DR+ +V+ + E+AKK+ + Q E + G GT+
Sbjct: 232 PPFSDHIELGKGPVIGLGPVVDRN------LVQKIIEIAKKHNVSLQEEAVGGRSGTETD 285
Query: 297 AIHLTKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLM 336
+ L + GV T +S+P +Y+H+ E+VD RDV+ +L+
Sbjct: 286 FVQLVRNGVRTSLISIPLKYMHTPVEMVDPRDVEELARLL 325
>sp|Q48677|PEPA_LACLC GLUTAMYL-AMINOPEPTIDASE >gi|1072381|emb|CAA56994.1| (X81089)
glutamyl-aminopeptidase [Lactococcus lactis]
Length = 355
Score = 161 bits (402), Expect = 2e-38
Identities = 110/333 (33%), Positives = 173/333 (51%), Gaps = 15/333 (4%)
Query: 4 YELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVI---AHRKGEGPKVMI 60
++ +K + E SG+E +RD + + + + + D LG + A + P++M+
Sbjct: 4 FDKVKALTEIQATSGFEG-PVRDYLKARMVELGYQPEFDGLGGIFVTKASKVENAPRIMV 62
Query: 61 AAHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQ 120
AAHMD++G MV++I+ +G RV P+GG +P + QRF ++ K I V +PPH+
Sbjct: 63 AAHMDEVGFMVSSIKADGTFRVVPLGGWNPLVVSGQRFTLFTRTGKKIPVVTGGLPPHLL 122
Query: 121 K-PEERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGR--LERLGKHRFVSIAFD 177
+ + P I D E+ EA E G+ G +I + L GK+ +S A+D
Sbjct: 123 RGTGVTPQIPAISDIIFDGAFENAAEAAEFGIAQGDLIIPETETILSANGKN-IISKAWD 181
Query: 178 DRIAVYTMLEVARQLEDTKADVYFV--ATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAA 235
+R +LE+ L D + V + A VQEEVGLRGA+ S PD FA+D + A+
Sbjct: 182 NRYGCLMILELLEFLADKELPVTLIIGANVQEEVGLRGAKVSTTKFNPDLFFAVDCSPAS 241
Query: 236 DVPGTPEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGTDA 295
D G + LG+GT ++ D I P + +L + A ++ Q+ + GGTDA
Sbjct: 242 DTFGDDNGR----LGEGTTLRFFDPGHIMLPGMKNFLLDTANHAKVKTQV-YMAKGGTDA 296
Query: 296 GAIHLTKAGVPTGALSVPARYIHSNAEVVDERD 328
GA HL GVP+ + V ARYIHS+ + + D
Sbjct: 297 GAAHLANGGVPSTTIGVVARYIHSHQTIFNIDD 329
>gb|AAG19796.1| (AE005064) endoglucanase; CelM [Halobacterium sp. NRC-1]
Length = 353
Score = 153 bits (384), Expect = 2e-36
Identities = 109/329 (33%), Positives = 156/329 (47%), Gaps = 10/329 (3%)
Query: 7 LKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMIAAHMDQ 66
L +++ +G+E R V +E + Y D V+ D GN +A +G P V H D+
Sbjct: 9 LDELLAVHSPTGHEAAAQR-VWVEYVSQYADRVETDAYGNAVAVAEGGAPAVAFTGHADE 67
Query: 67 IGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHIQKPEERK 126
IG V I + GF+R+APIGG+D + ++ D D + GV H++ E
Sbjct: 68 IGFAVAEITEGGFVRIAPIGGLDASVTRGSQVRIETD-DGPVNGVIGQAAVHLRDHSEDG 126
Query: 127 KAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFDDRIAVYTML 186
AP + ++DIGA ++A + V +G L R + + D+R ++
Sbjct: 127 AAPSVTEQYVDIGAADGDDARDR-VSVGDPGVLVSEPRELAGGRLNARSLDNRTGLWVAA 185
Query: 187 EVARQL--EDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIAADVPGTP-EH 243
E R+ D A VY V+TV EE+G RGAR F ++ D A DVT AAD P P E
Sbjct: 186 EGFRRAVERDVDATVYAVSTVHEEIGTRGARMVGFDLDVDAVVAADVTHAADDPMYPAER 245
Query: 244 KQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEI-LLGGGTDAGAIHLTK 302
LG G + R HP +V L + A Q+ + GTDA A
Sbjct: 246 ASTVALGDGPVVM---RGGTNHPVVVSALRDAAADAGASLQVAAHRISTGTDADAFGTAG 302
Query: 303 AGVPTGALSVPARYIHSNAEVVDERDVDA 331
GVPT L +P RY+H+ AEVVD D+ A
Sbjct: 303 GGVPTADLGIPNRYMHTPAEVVDLADLAA 331
>pir||S72475 glucanase (EC 3.2.1.-) - Anabaena variabilis
>gi|1523802|emb|CAA66983.1| (X98339) glucanase [Anabaena
variabilis]
Length = 346
Score = 82.3 bits (200), Expect = 8e-15
Identities = 83/308 (26%), Positives = 139/308 (44%), Gaps = 33/308 (10%)
Query: 4 YELLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKVMIA-- 61
+E ++++V SG E I +++++ EV D+ N+IA G+ + +A
Sbjct: 8 FENIEELVMHHSPSGAE-TEINQLLLQKFAALGVEVWSDRADNIIAKIPGKNSDIAVAIT 66
Query: 62 AHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPPHI-- 119
AH D+IG +V NI G + V +GG P + + + ++ I G+ + H+
Sbjct: 67 AHKDEIGAIVKNIGDAGKVEVRKLGGAYP-WVYGEGVVDLLGDNETISGILSFGSRHVSH 125
Query: 120 ---QKPEERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAF 176
QK ++ A +W+ +I+ + EE E G+R GT + +GKHR +
Sbjct: 126 ESPQKVQQEDTAVKWENAWIET-KRTTEELEAAGIRPGTRMV-------IGKHRKRPVRL 177
Query: 177 DDRIAVYTM---------LEVARQLEDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGF 227
D IA YT+ L + +QL+ DVY VA+ +EEVG GA F +
Sbjct: 178 QDHIASYTLDNKASVAILLALVQQLKQPAIDVYLVASAKEEVGAIGA---LFFTQNQ--- 231
Query: 228 AIDVTIAADVPGTPEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEI 287
+D IA ++ E V + + + D I + L + AK+ + QL
Sbjct: 232 QLDALIALEICPLSEEYPVKD-SENPVLLVQDAYGIYDEGLNGELRQCAKQLNMSVQLTT 290
Query: 288 LLGGGTDA 295
L G G+DA
Sbjct: 291 LSGFGSDA 298
>pir||C69830 glucanase homolog yhfE - Bacillus subtilis
>gi|2226238|emb|CAA74526.1| (Y14083) hypothetical
protein [Bacillus subtilis] >gi|2633356|emb|CAB12860.1|
(Z99109) similar to glucanase [Bacillus subtilis]
Length = 346
Score = 81.1 bits (197), Expect = 2e-14
Identities = 77/304 (25%), Positives = 144/304 (47%), Gaps = 24/304 (7%)
Query: 5 ELLKKVVEAPGVSG--YEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAHRKGEGPKV--MI 60
EL+K++V P +G YE + + +++E K V+ V+ K G +IA G M+
Sbjct: 9 ELIKELVSIPSPTGNTYEVINYIESLLKEWK--VETVRNHK-GGLIATLPGRDTSRHRML 65
Query: 61 AAHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYG--VGASVPPH 118
AH+D +G MV I+ +G L++ IGG ++ + ++ K G + H
Sbjct: 66 TAHVDTLGAMVKEIKADGRLKIDLIGGFRYNSIEGEYCQIETASGKMYTGTILMHQTSVH 125
Query: 119 IQKPEER-KKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAFD 177
+ K + ++ E +I +D +++ EE+G+ +G +++D R+E S D
Sbjct: 126 VYKDAGKAERNQENMEIRLDEPVHCRKDTEELGIGVGDFVSFDPRVEITSSGFIKSRHLD 185
Query: 178 DRIAVYTMLEVARQLEDTKADV----YFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTI 233
D+ +V +L + +++ ++ +F+ + EE+G G S E A+D+
Sbjct: 186 DKASVALLLRLIHEIQTEDIELPYTTHFLISNNEEIGYGG--NSNIPPETVEYLAVDMGA 243
Query: 234 AADVPGTPEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGGT 293
D T E+ +I + D S H + + L +LA+K+ I Y+L+I G+
Sbjct: 244 IGDGQATDEY--------SVSICVKDASGPYHYQLRKHLVQLAEKHHIDYKLDIYPYYGS 295
Query: 294 DAGA 297
DA A
Sbjct: 296 DASA 299
>pir||D83374 hypothetical protein PA2172 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9948192|gb|AAG05560.1|AE004644_7
(AE004644) hypothetical protein [Pseudomonas aeruginosa]
Length = 358
Score = 79.6 bits (193), Expect = 5e-14
Identities = 85/354 (24%), Positives = 148/354 (41%), Gaps = 30/354 (8%)
Query: 6 LLKKVVEAPGVSGYEFLGIRDVVIEEIKDYVDEVKVDKLGNVIAH--------RKGEGPK 57
LL++++ A G G E +R + E++ DEV D GN++A +
Sbjct: 8 LLEELLLARGPGGQED-EVRAICQRELEGCCDEVGSDAAGNLVARISPPHLPREQARRAA 66
Query: 58 VMIAAHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDK----DKFIYGVGA 113
V + AH+D+I ++V +E +G LRV +GG P + ++ + YG
Sbjct: 67 VRLLAHLDEIAMIVKRVEADGTLRVVALGGAQPVSFGVCPVQILAGEAVLDGVLSYGSMH 126
Query: 114 SVPPHIQKPEERKKAPEWDQIFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVS 173
+ Q + A W + + + S EE +GVR GT + + RL R +
Sbjct: 127 ATGESPQGSDVLSGAVHWRDVHV-VTRRSAEELANLGVRPGTRVVLN-RLWRRPLYFQDC 184
Query: 174 IA---FDDRIAVYTML----EVARQLEDTKADVYFVATVQEEVGLRGARTSAFAIEPDYG 226
+A DDR + +L E+AR+ ++ D+Y V T EE GA +A + D
Sbjct: 185 VAAHFLDDRAPLLAVLGVAREIARRRDELHGDLYLVLTTMEEESNAGALFAARRLPGDIS 244
Query: 227 FAIDVTIAADVPGTPEHKQVTHLGKGTAIKIMDRSVICHPTIVRWLEELAKKYEIPYQLE 286
A++V G + T L + + D + L A++ + Q
Sbjct: 245 IAVEV-------GPTVAEYGTRLCRDPIVNSGDSKGYYSRHVTDRLLRAAERCQYQPQAA 297
Query: 287 ILLGGGTDAGAIHLTKAGVPTGALSVPARYIHSNAEVVDERDVDATVKLMVKAL 340
+L+ +DA A+ G + +P H E+V E ++A + +V+ L
Sbjct: 298 LLVDFASDASALLSHGEAAQVGCIGIPTENTH-GFEIVLEEGIEACRRTLVEFL 350
>pir||G75040 probable aminopeptidase (EC 3.4.11.-) PAB0869 - Pyrococcus abyssi
(strain Orsay) >gi|5458733|emb|CAB50220.1| (AJ248287)
similar to glucanase [Pyrococcus abyssi]
Length = 335
Score = 73.7 bits (178), Expect = 3e-12
Identities = 81/305 (26%), Positives = 140/305 (45%), Gaps = 32/305 (10%)
Query: 5 ELLKKVVEAPGVSGY--EFLGIRDVVIEE--IKDYVDEVKVDKLGNVIAHRKGEGPKVMI 60
++LK+++E P +GY E + + ++E +K Y GN HR+ PK+++
Sbjct: 6 KILKEILEIPSPTGYMKEIMPYLESFLKENNVKFYYTNKGALVAGN---HRE---PKLVV 59
Query: 61 AAHMDQIGLMVTNIEKNGFLRVAPIGGVDPKTLIAQRFKVWIDKDKFIYGVGASVPP--H 118
AH+D +G MV I NG L + IGG+ T + + + K G P H
Sbjct: 60 IAHVDTLGAMVKEILPNGHLAFSRIGGLLLPTFEGEYCTIITRRGKKFRGTLLLRNPSMH 119
Query: 119 IQKPEERKKAPEWDQ-IFIDIGAESKEEAEEMGVRIGTVITWDGRLERLGKHRFVSIAF- 176
+ K +K+ E + I +D E KE+ E++G+R G I +D + E + + F+ F
Sbjct: 120 VNKDAGKKERTEENMYIRLDELVEKKEDTEKLGIRPGDYIAFDPKFEYI--NGFIKSHFL 177
Query: 177 DDRIAVYTMLEVARQL--EDTKADVYFVATVQEEVGLRGARTSAFAIEPDYGFAIDVTIA 234
DD+ +V +L++ + E K V F + EEVG G ++ + +D+ +
Sbjct: 178 DDKASVAVILDLIADMGEELEKYPVAFFFSPYEEVGHGG--SAGYPPSARELLVVDMGVV 235
Query: 235 ADVPGTPEHKQVTHLGKGTAIKI--MDRSVICHPTIVRWLEELAKKYEIPYQLEILLGGG 292
+ GK TA+ I D + + L ELA++ IPY +++ G
Sbjct: 236 GEGVS----------GKETAVSIAAKDTTTPYDYDMTTRLIELAEQNNIPYVVDVFPYYG 285
Query: 293 TDAGA 297
+D A
Sbjct: 286 SDGSA 290
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.401
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129798804
Number of Sequences: 2977
Number of extensions: 5512433
Number of successful extensions: 12476
Number of sequences better than 1.0e-10: 33
Number of HSP's better than 0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 12353
Number of HSP's gapped (non-prelim): 33
length of query: 348
length of database: 189,106,746
effective HSP length: 56
effective length of query: 292
effective length of database: 155,591,474
effective search space: 45432710408
effective search space used: 45432710408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)