BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0438 (PAB0438) DE:Hypothetical protein
         (115 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75105 hypothetical protein PAB0438 - Pyrococcus abyssi (st...   238  1e-62
pir||D71029 hypothetical protein PH1526 - Pyrococcus horikoshii ...   234  3e-61

>pir||E75105 hypothetical protein PAB0438 - Pyrococcus abyssi (strain Orsay)
           >gi|5458069|emb|CAB49558.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 115
           
 Score =  238 bits (602), Expect = 1e-62
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MKVIKEWNVKVKLVRTKRGAILHMIELKPGHFFLEQNPLKPSKYGEAYRKIKQNFPEFYF 60
           MKVIKEWNVKVKLVRTKRGAILHMIELKPGHFFLEQNPLKPSKYGEAYRKIKQNFPEFYF
Sbjct: 1   MKVIKEWNVKVKLVRTKRGAILHMIELKPGHFFLEQNPLKPSKYGEAYRKIKQNFPEFYF 60

Query: 61  FWEIKDNKYTGRILAGAFLEKEEIDEFLTLLAKTEDFKKLEHVLEEIEEIEEGEE 115
           FWEIKDNKYTGRILAGAFLEKEEIDEFLTLLAKTEDFKKLEHVLEEIEEIEEGEE
Sbjct: 61  FWEIKDNKYTGRILAGAFLEKEEIDEFLTLLAKTEDFKKLEHVLEEIEEIEEGEE 115


>pir||D71029 hypothetical protein PH1526 - Pyrococcus horikoshii
           >gi|3257953|dbj|BAA30636.1| (AP000006) 136aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 136
           
 Score =  234 bits (590), Expect = 3e-61
 Identities = 110/115 (95%), Positives = 114/115 (98%)

Query: 1   MKVIKEWNVKVKLVRTKRGAILHMIELKPGHFFLEQNPLKPSKYGEAYRKIKQNFPEFYF 60
           M+VIKEWNVK+KLVRTKRGAILHMIELKPGHFFLEQNPLKPSKYGEAYRKIKQNFPEFYF
Sbjct: 22  MRVIKEWNVKIKLVRTKRGAILHMIELKPGHFFLEQNPLKPSKYGEAYRKIKQNFPEFYF 81

Query: 61  FWEIKDNKYTGRILAGAFLEKEEIDEFLTLLAKTEDFKKLEHVLEEIEEIEEGEE 115
           FWEIKDNKYTG++ AGAFLEKEEIDEFLTLLAKTEDFKKLEHVLEEIEEIEEGEE
Sbjct: 82  FWEIKDNKYTGKVFAGAFLEKEEIDEFLTLLAKTEDFKKLEHVLEEIEEIEEGEE 136


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.140    0.406 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45777986
Number of Sequences: 2977
Number of extensions: 1846901
Number of successful extensions: 5638
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5636
Number of HSP's gapped (non-prelim): 2
length of query: 115
length of database: 189,106,746
effective HSP length: 51
effective length of query: 64
effective length of database: 158,583,909
effective search space: 10149370176
effective search space used: 10149370176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 160 (66.7 bits)