BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0439 (PAB0439) DE:Hypothetical protein
(109 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75105 hypothetical protein PAB0439 - Pyrococcus abyssi (st... 211 2e-54
pir||B71029 hypothetical protein PH1524 - Pyrococcus horikoshii ... 191 1e-48
gi|11497831 conserved hypothetical protein [Archaeoglobus fulgid... 114 3e-25
pir||C69103 conserved hypothetical protein MTH177 - Methanobacte... 110 3e-24
pir||D72776 hypothetical protein APE0198 - Aeropyrum pernix (str... 87 6e-17
sp|Q57728|Y280_METJA HYPOTHETICAL PROTEIN MJ0280 >gi|2128211|pir... 83 7e-16
emb|CAC12567.1| (AL445067) conserved hypothetical protein [Therm... 76 9e-14
pir||T37334 hypothetical protein - Thermoplasma acidophilum >gi|... 75 2e-13
>pir||F75105 hypothetical protein PAB0439 - Pyrococcus abyssi (strain Orsay)
>gi|5458070|emb|CAB49559.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 109
Score = 211 bits (531), Expect = 2e-54
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MMPMNPKQLKKLMKQLDMKQLDGVKEVIIKLENKEIVIKEPVVTVIRAMGEKMYQIAGGT 60
MMPMNPKQLKKLMKQLDMKQLDGVKEVIIKLENKEIVIKEPVVTVIRAMGEKMYQIAGGT
Sbjct: 1 MMPMNPKQLKKLMKQLDMKQLDGVKEVIIKLENKEIVIKEPVVTVIRAMGEKMYQIAGGT 60
Query: 61 EEERVVLKISEEDIKLVMEQAGVDYETAKKALEEAGGDLAEAILRLTDQ 109
EEERVVLKISEEDIKLVMEQAGVDYETAKKALEEAGGDLAEAILRLTDQ
Sbjct: 61 EEERVVLKISEEDIKLVMEQAGVDYETAKKALEEAGGDLAEAILRLTDQ 109
>pir||B71029 hypothetical protein PH1524 - Pyrococcus horikoshii
>gi|3257951|dbj|BAA30634.1| (AP000006) 115aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 115
Score = 191 bits (481), Expect = 1e-48
Identities = 93/108 (86%), Positives = 105/108 (97%)
Query: 1 MMPMNPKQLKKLMKQLDMKQLDGVKEVIIKLENKEIVIKEPVVTVIRAMGEKMYQIAGGT 60
MMPMNPKQLKKLMKQLDM+QL+GVKEVIIK+E++EI+IKEP+VTVI+AMGEKMYQIAGG+
Sbjct: 4 MMPMNPKQLKKLMKQLDMRQLEGVKEVIIKMEDREIIIKEPIVTVIKAMGEKMYQIAGGS 63
Query: 61 EEERVVLKISEEDIKLVMEQAGVDYETAKKALEEAGGDLAEAILRLTD 108
EEE+ ++ ISEEDIKLVMEQAGVDYETAKKALEE GGDLAEAILRLTD
Sbjct: 64 EEEKAIINISEEDIKLVMEQAGVDYETAKKALEETGGDLAEAILRLTD 111
>gi|11497831 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451019|pir||G69276 conserved hypothetical protein
AF0215 - Archaeoglobus fulgidus
>gi|2650428|gb|AAB91018.1| (AE001091) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 109
Score = 114 bits (282), Expect = 3e-25
Identities = 59/110 (53%), Positives = 85/110 (76%), Gaps = 3/110 (2%)
Query: 1 MMPMNPKQLKKLMKQL--DMKQLDGVKEVIIKLENKEIVIKEPVVTVIRAMGEKMYQIAG 58
M+PMNPKQ+KK+MKQ+ +M++LD +EVII+ ++E++ + P V+ I A G + +QI G
Sbjct: 1 MLPMNPKQMKKMMKQMGIEMEELDA-EEVIIRTSDEELIFRNPNVSKISARGVETFQIVG 59
Query: 59 GTEEERVVLKISEEDIKLVMEQAGVDYETAKKALEEAGGDLAEAILRLTD 108
E + KISE+DIKL+MEQA VD ETA++ALEEAGGDLAEA+++L +
Sbjct: 60 EYEVVKRPPKISEDDIKLIMEQANVDEETARRALEEAGGDLAEALMKLQE 109
>pir||C69103 conserved hypothetical protein MTH177 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621220|gb|AAB84683.1| (AE000805) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 117
Score = 110 bits (273), Expect = 3e-24
Identities = 61/113 (53%), Positives = 79/113 (68%), Gaps = 7/113 (6%)
Query: 2 MPMNPKQLKKL---MKQ--LDMKQLDGVKEVIIKLENKEIVIKEPVVTVIRAMGEKMYQI 56
M MNPKQLK++ MKQ +DMK L GV+EV+IKL+ KEI+IK P V V+ MG+K YQ+
Sbjct: 5 MGMNPKQLKQMQRAMKQMGMDMKDLRGVEEVVIKLKRKEIIIKNPKVNVMEFMGQKTYQV 64
Query: 57 AGGTEEE--RVVLKISEEDIKLVMEQAGVDYETAKKALEEAGGDLAEAILRLT 107
G E ++I E+DI+LVM Q G E A +AL+E GGDLAEAI+RL+
Sbjct: 65 TGKARERSLEAEMEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRLS 117
>pir||D72776 hypothetical protein APE0198 - Aeropyrum pernix (strain K1)
>gi|5103589|dbj|BAA79110.1| (AP000058) 137aa long
hypothetical protein [Aeropyrum pernix]
Length = 137
Score = 86.6 bits (211), Expect = 6e-17
Identities = 50/113 (44%), Positives = 74/113 (65%), Gaps = 7/113 (6%)
Query: 1 MMPMNPKQLKKLMKQLDMK--QLDGVKEVIIKLENKEIVIKEPVVTVIRAMGEK--MYQI 56
++P+NP+ L+K+M++L +K QL + I+ + +V + P V V+RA G+ +Y +
Sbjct: 21 VLPVNPRDLEKMMRRLGIKVEQLSADEARIVLGSGETMVFRSPTVIVMRAKGQPPMVYLV 80
Query: 57 AGGTEE---ERVVLKISEEDIKLVMEQAGVDYETAKKALEEAGGDLAEAILRL 106
T E E +I+EED+ LV EQAGV E A+KALEE+GGD+AEAILRL
Sbjct: 81 GDYTVEKPREETAAEITEEDVALVAEQAGVSMEEARKALEESGGDIAEAILRL 133
>sp|Q57728|Y280_METJA HYPOTHETICAL PROTEIN MJ0280 >gi|2128211|pir||A64335 conserved
hypothetical protein MJ0280 - Methanococcus jannaschii
>gi|1499062|gb|AAB98268.1| (U67483) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 128
Score = 83.1 bits (202), Expect = 7e-16
Identities = 49/120 (40%), Positives = 74/120 (60%), Gaps = 15/120 (12%)
Query: 4 MNPKQLKKLMKQL-----DMKQLDGVKEVIIKLENKEIVIKEPVVTVIRAMGEKMYQIAG 58
+NP+ LKK+ K + + + LD V++VI +++E V +EP V V+ +G K Y I G
Sbjct: 6 VNPRMLKKMQKMMKDFGMETEDLD-VRKVIFVFDDEEWVFEEPKVQVMDILGVKTYSITG 64
Query: 59 GT---------EEERVVLKISEEDIKLVMEQAGVDYETAKKALEEAGGDLAEAILRLTDQ 109
EEE V ++I+EED++LV +Q V E A+KALEE GD+AEAIL+L ++
Sbjct: 65 KPKKIKKEKVEEEEEVKVEITEEDVELVAKQCNVSKEEARKALEECNGDIAEAILKLEEE 124
>emb|CAC12567.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 119
Score = 76.1 bits (184), Expect = 9e-14
Identities = 45/111 (40%), Positives = 68/111 (60%), Gaps = 8/111 (7%)
Query: 4 MNPKQLKKLMKQLDMK--QLDGVKEVIIKLENKEIVIKEPVVTVIRAMGEKMYQIAGGTE 61
MN +++++LM Q+ +K ++D V +VI K + K+ VI VT+I A G K +Q+ G
Sbjct: 6 MNSREMRRLMAQMGIKSTEMDDVTKVIFKGKTKDYVIDNAQVTMIEAQGVKTFQVVGTMR 65
Query: 62 E------ERVVLKISEEDIKLVMEQAGVDYETAKKALEEAGGDLAEAILRL 106
E E+ E+DIKLVMEQA V E A +AL+ +GG+ A+AI+ L
Sbjct: 66 EVPKEPEEKKEESFPEDDIKLVMEQASVSREKAIEALKASGGEPAQAIMNL 116
>pir||T37334 hypothetical protein - Thermoplasma acidophilum
>gi|5689052|dbj|BAA82798.1| (AB023294) Orf1
[Thermoplasma acidophilum]
Length = 124
Score = 74.9 bits (181), Expect = 2e-13
Identities = 44/111 (39%), Positives = 68/111 (60%), Gaps = 8/111 (7%)
Query: 4 MNPKQLKKLMKQLDMK--QLDGVKEVIIKLENKEIVIKEPVVTVIRAMGEKMYQIAGGTE 61
MN +++++LM Q+ +K ++D V +VI K + K+ VI VT+I A G K +Q+ G
Sbjct: 11 MNSREMRRLMAQMGIKSTEMDDVTKVIFKGKTKDYVIDNAQVTMIEAQGVKTFQVVGTMR 70
Query: 62 E------ERVVLKISEEDIKLVMEQAGVDYETAKKALEEAGGDLAEAILRL 106
E E+ E+DIKLVM+QA V E A +AL+ +GG+ A+AI+ L
Sbjct: 71 EVPKEPEEKKEESFPEDDIKLVMDQASVSREKAIEALKASGGEPAQAIINL 121
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.313 0.133 0.339
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34790467
Number of Sequences: 2977
Number of extensions: 1232085
Number of successful extensions: 4877
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4868
Number of HSP's gapped (non-prelim): 9
length of query: 109
length of database: 189,106,746
effective HSP length: 61
effective length of query: 48
effective length of database: 152,599,039
effective search space: 7324753872
effective search space used: 7324753872
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 159 (66.3 bits)