BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0440 602941 603495 185 !not a gene!
         (185 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71029 hypothetical protein PH1523 - Pyrococcus horikoshii ...   219  2e-56

>pir||A71029 hypothetical protein PH1523 - Pyrococcus horikoshii
           >gi|3257950|dbj|BAA30633.1| (AP000006) 236aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 236
           
 Score =  219 bits (551), Expect = 2e-56
 Identities = 122/177 (68%), Positives = 137/177 (76%)

Query: 9   EAFSRLSLDRNSLLSIATSMILRAVLLTTGSSSFKTSKAKLKASSIIFSFFVLVTISLRT 68
           EAFSRLSL+R S LSIATS I  A  LTTG SSF TS+AKL ASS+I    VL TIS  T
Sbjct: 13  EAFSRLSLERYSFLSIATSTIPSAAFLTTGFSSFNTSRAKLNASSMISGSLVLTTISFST 72

Query: 69  LNADTFFFVDFPCSMPLIQENIFLAIIIILAPSVATPSAAYSFIGSGLFSTIPMRTSESS 128
           L A+TFFF DFP  M LIQENI LA +IILAP VATPSAAYSFIGSGLFSTIP+  SES 
Sbjct: 73  LRAETFFFSDFPFRMFLIQENIILATLIILAPRVATPSAAYSFIGSGLFSTIPINISESL 132

Query: 129 ELRSSGRSMKLIIAFIVSTVCNTTLSSLSSRSLIKLGISSLISFVLNSFFIANFFMM 185
            L SSG SMK+ +AFIVST C TT+SSLSS SLI+ GI+S  S + +SFFIA+FF+M
Sbjct: 133 VLISSGNSMKVTMAFIVSTACKTTVSSLSSNSLIRSGITSFTSSIPSSFFIASFFIM 189


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.136    0.358 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48954944
Number of Sequences: 2977
Number of extensions: 1589084
Number of successful extensions: 8284
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8282
Number of HSP's gapped (non-prelim): 1
length of query: 185
length of database: 189,106,746
effective HSP length: 60
effective length of query: 125
effective length of database: 153,197,526
effective search space: 19149690750
effective search space used: 19149690750
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 162 (67.5 bits)