BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0441 604317 604730 138 !not a gene!
         (138 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71028 hypothetical protein PH1521 - Pyrococcus horikoshii ...   122  2e-27

>pir||G71028 hypothetical protein PH1521 - Pyrococcus horikoshii
           >gi|3257948|dbj|BAA30631.1| (AP000006) 133aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 133
           
 Score =  122 bits (302), Expect = 2e-27
 Identities = 74/128 (57%), Positives = 87/128 (67%)

Query: 4   SGTSSLISLIVLGVSLSLFFEKIISREDIAFFFSSASCSVFMNSLISLVISSITSTLSLL 63
           SGTS  ISL V  +  S FF ++IS+++ AFF +S SCS+F  SLIS  I SIT    LL
Sbjct: 5   SGTSLWISLRVSELISSFFFVRMISKDERAFFLTSLSCSLFRTSLISFAIPSITFLSLLL 64

Query: 64  LAISVRALRAAPLTSLSFPSFIKETRNSTILFMKLVILAPKIPSSSAAYSLSIPLLEVII 123
           LAISVRA++AA LTSLS  S  KETR     FM +VI AP IPSSSAAYSL+IP L VI 
Sbjct: 65  LAISVRAVKAASLTSLSLLSLTKETRKFITFFMSVVIFAPMIPSSSAAYSLNIPFLVVIT 124

Query: 124 PDSVLITL 131
             +V I L
Sbjct: 125 FVNVAIIL 132


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.135    0.358 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38329286
Number of Sequences: 2977
Number of extensions: 1169665
Number of successful extensions: 5359
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5358
Number of HSP's gapped (non-prelim): 1
length of query: 138
length of database: 189,106,746
effective HSP length: 59
effective length of query: 79
effective length of database: 153,796,013
effective search space: 12149885027
effective search space used: 12149885027
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 160 (66.7 bits)