BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0444 (PAB0444) DE:Hypothetical protein
(319 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75106 hypothetical protein PAB0444 - Pyrococcus abyssi (st... 625 e-178
pir||F71027 hypothetical protein PH1514 - Pyrococcus horikoshii ... 285 6e-76
pir||E71164 hypothetical protein PH0514 - Pyrococcus horikoshii ... 85 1e-15
pir||A75068 hypothetical protein PAB1351 - Pyrococcus abyssi (st... 83 5e-15
pir||G75029 hypothetical protein PAB1160 - Pyrococcus abyssi (st... 79 6e-14
pir||D71215 hypothetical protein PH1988 - Pyrococcus horikoshii ... 76 4e-13
pir||D71182 hypothetical protein PH1737 - Pyrococcus horikoshii ... 76 5e-13
pir||B75143 hypothetical protein PAB0205 - Pyrococcus abyssi (st... 72 1e-11
pir||H75180 hypothetical protein PAB0416 - Pyrococcus abyssi (st... 70 4e-11
>pir||G75106 hypothetical protein PAB0444 - Pyrococcus abyssi (strain Orsay)
>gi|5458079|emb|CAB49568.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 319
Score = 625 bits (1594), Expect = e-178
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MIPFFKEVLMGIPFLVIYVVLFYHYHISRNSSYLMYFSLAFLSLGVGIMVEDAYLAGLAF 60
MIPFFKEVLMGIPFLVIYVVLFYHYHISRNSSYLMYFSLAFLSLGVGIMVEDAYLAGLAF
Sbjct: 1 MIPFFKEVLMGIPFLVIYVVLFYHYHISRNSSYLMYFSLAFLSLGVGIMVEDAYLAGLAF 60
Query: 61 FSSFFWIGVIQFLRRLGGFKGLNLKYLLYVAPTSLASYMFFLDRSEVITLVIVSLMLTLL 120
FSSFFWIGVIQFLRRLGGFKGLNLKYLLYVAPTSLASYMFFLDRSEVITLVIVSLMLTLL
Sbjct: 61 FSSFFWIGVIQFLRRLGGFKGLNLKYLLYVAPTSLASYMFFLDRSEVITLVIVSLMLTLL 120
Query: 121 AIMLAFKKVKLTSVFLVLLVLVSVFGYYSDLAKYLFVIIATTLGYFLIVETKIDLRKTIL 180
AIMLAFKKVKLTSVFLVLLVLVSVFGYYSDLAKYLFVIIATTLGYFLIVETKIDLRKTIL
Sbjct: 121 AIMLAFKKVKLTSVFLVLLVLVSVFGYYSDLAKYLFVIIATTLGYFLIVETKIDLRKTIL 180
Query: 181 SPPSTGEELKLKPGVIFAETIPEDILKVALVFSRKPGKGERWFWVTKLKSSDVNTIEPTN 240
SPPSTGEELKLKPGVIFAETIPEDILKVALVFSRKPGKGERWFWVTKLKSSDVNTIEPTN
Sbjct: 181 SPPSTGEELKLKPGVIFAETIPEDILKVALVFSRKPGKGERWFWVTKLKSSDVNTIEPTN 240
Query: 241 LPKILSLAVDYLKKKGVVVIDCLDYLILENGFESVIKFMAHLRDYAVMHGSSVIILGPLE 300
LPKILSLAVDYLKKKGVVVIDCLDYLILENGFESVIKFMAHLRDYAVMHGSSVIILGPLE
Sbjct: 241 LPKILSLAVDYLKKKGVVVIDCLDYLILENGFESVIKFMAHLRDYAVMHGSSVIILGPLE 300
Query: 301 GLSDKEKVMLKRALGEEDV 319
GLSDKEKVMLKRALGEEDV
Sbjct: 301 GLSDKEKVMLKRALGEEDV 319
>pir||F71027 hypothetical protein PH1514 - Pyrococcus horikoshii
>gi|3257939|dbj|BAA30622.1| (AP000006) 310aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 310
Score = 285 bits (721), Expect = 6e-76
Identities = 146/320 (45%), Positives = 222/320 (68%), Gaps = 20/320 (6%)
Query: 6 KEVLMGIPFLVIYVVLFYHYHISRNSSYLMYFSLAFLSLGVGIMVEDAYLAGLAFFSSFF 65
+++++ +P LV+YV+LFYHYH SR S+Y +Y++LAFLSLGVG+ +E YLA ++F S F+
Sbjct: 5 EQLILMVPLLVVYVLLFYHYHKSR-SNYAIYYALAFLSLGVGLAIESTYLASISFLSFFY 63
Query: 66 WIGVIQFLRRLGGFKGLNLKYLLYVAPTSLASYMFFLDRSEVITLVIVSLMLTLLAIMLA 125
W+ I+ L L + + LLY +P LA+Y+FF ++ ++I+ + L+L M+
Sbjct: 64 WLATIRLLEHL---EFEEKQELLYASPVPLAAYIFF---PRLLAVIIIFVALSLTGFMML 117
Query: 126 FKK---VKLTSVFLVLLVLVSVFGYYSDLAKYLFVIIATTLGYFLIVE-TKIDLRKTILS 181
KK +K+ ++L LVS G Y +YL +I ++GY ++ +++DL K LS
Sbjct: 118 MKKEKNIKILGALTLILALVSALGEYKSFFRYLSAVIGISIGYVIVAGISEVDLVKIKLS 177
Query: 182 PPSTGEELKLKPGVIFAETIPEDILKVALVFSRKPGKGE--RWFWVTKLKSSDVNTIEPT 239
EE ++KPG++F E++P D+LKVALVFSR+P + +WFW+TKL+ N I PT
Sbjct: 178 -----EEFEIKPGIMFLESVPRDLLKVALVFSRRPPEKNDGKWFWITKLEGK--NNIGPT 230
Query: 240 NLPKILSLAVDYLKKKGVVVIDCLDYLILENGFESVIKFMAHLRDYAVMHGSSVIILGPL 299
+L KIL LAV ++KK G+V+IDCL+YLILENGFE V+KF+A LRDYA+M+ S+VIILG L
Sbjct: 231 DLHKILDLAVKHIKKGGIVIIDCLEYLILENGFERVLKFLAQLRDYAIMYNSTVIILGSL 290
Query: 300 EGLSDKEKVMLKRALGEEDV 319
+ LS++E+ ML+ +LG+ +V
Sbjct: 291 DKLSERERAMLRSSLGDNNV 310
>pir||E71164 hypothetical protein PH0514 - Pyrococcus horikoshii
>gi|3256919|dbj|BAA29602.1| (AP000002) 352aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 352
Score = 84.7 bits (206), Expect = 1e-15
Identities = 87/328 (26%), Positives = 155/328 (46%), Gaps = 45/328 (13%)
Query: 24 HYHISRNSSYLMYFSLAFLSLG-VGIMVEDAYLAGL--AFFSSFFWIGVIQF-LRRLGGF 79
+Y R SS ++ +LA +L + ++++ +L L A S+ F++ +
Sbjct: 28 YYRTRRKSSVVLSLALALYALNTLSDLLKNYFLNQLFLALSSACFFMALYYLEAEEEKAV 87
Query: 80 KGLNLKYLLYVAPTSLASYMFFLDR----SEVITLVIVSLMLTLLAIMLAFKKV-KLTSV 134
L L + P + Y++ L+R SE ++V VS ++ I+ + + KL +
Sbjct: 88 PSKTLYLTLSLTPLLITIYVWLLERVIPTSETWSIVGVSWGISGFFILASGVSILKLRDI 147
Query: 135 F--LVLLVLVSVFGYYSDLAKYLFV-----------------IIATTLGYFLIVETKIDL 175
F +L + S+ + Y F+ ++ G FL+ +++
Sbjct: 148 FGNRILWLSASLIAIGAHEMDYPFLRPIKWFAPIGFLLAATFVVLLVYGIFLVFGSEVYF 207
Query: 176 RKTILSPPSTGE-ELKLKPGVI------FAETIPEDILKVALVFSRKPGKGERWF--WVT 226
++ S G+ +KLKPG + F P L F R E W+ +VT
Sbjct: 208 KRK-----SPGKISIKLKPGSMIMNMEEFKAISPSLQNFPVLAFVRHLKTPETWYSYFVT 262
Query: 227 KLKSSDVNTIEPTNLPKILSLAVDYLK--KKGVVVIDCLDYLILENGFESVIKFMAHLRD 284
+ +S D ++P NLP+I+ L+ Y + ++GVVVIDCL+YL+L NGFE+ K +A LRD
Sbjct: 263 RARS-DGGAVDPMNLPRIIELSRKYFQSVERGVVVIDCLEYLVLYNGFENTAKHLAILRD 321
Query: 285 YAVMHGSSVIILGPLEGLSDKEKVMLKR 312
YA ++ ++I++ E +KE +L R
Sbjct: 322 YATVNNGTLILITSKEAWGEKEWSLLVR 349
>pir||A75068 hypothetical protein PAB1351 - Pyrococcus abyssi (strain Orsay)
>gi|5458951|emb|CAB50438.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 355
Score = 82.7 bits (201), Expect = 5e-15
Identities = 45/110 (40%), Positives = 71/110 (63%), Gaps = 3/110 (2%)
Query: 203 EDILKVALVFSRKPGKGERWFWVTKLKSSDVNTIEPTNLPKILSLAVDYLK--KKGVVVI 260
+D +A V + KP G ++VT+ + D N + PTNLP++L L+ Y + + G+VVI
Sbjct: 238 KDFPVLAFVRNIKPLDGWYSYFVTRARE-DGNVLSPTNLPRMLELSKKYFQSVENGIVVI 296
Query: 261 DCLDYLILENGFESVIKFMAHLRDYAVMHGSSVIILGPLEGLSDKEKVML 310
DCL+Y + NGFE+ +K++A LRDYAV+H ++II+ +DKE +L
Sbjct: 297 DCLEYFSIYNGFENTLKYLAMLRDYAVLHNGTLIIVTDRMLWNDKEWSLL 346
>pir||G75029 hypothetical protein PAB1160 - Pyrococcus abyssi (strain Orsay)
>gi|5459191|emb|CAB50677.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 242
Score = 79.2 bits (192), Expect = 6e-14
Identities = 57/184 (30%), Positives = 92/184 (49%), Gaps = 15/184 (8%)
Query: 137 VLLVLVSVFGYYS--DLAKYLFVIIATTLGYFLIVETKIDLRKTILSPPSTGEELKLKPG 194
VL + + V YYS + ++ V+ T Y ++ +L + T E K
Sbjct: 57 VLYLFIKV-PYYSWIHIGGHILVMAGITYTYVEFIQ---NLERFFFPKEPTFREEKAFLA 112
Query: 195 VIFAETIPEDILKVALVFSRKP----GKGERWFWVTKLKSSDVNTIEPTNLPKILSLAVD 250
F E +P + L +R P K R WVT SS N + PT+L +L L++
Sbjct: 113 TSFEEVLPLMKGRNVLAITRDPDRFLNKASRIIWVT---SSGENGVPPTSLHVLLDLSIR 169
Query: 251 YLKKK--GVVVIDCLDYLILENGFESVIKFMAHLRDYAVMHGSSVIILGPLEGLSDKEKV 308
+ + GV+++DCL++LIL NGF SV KF+ +L+D + G ++I+ + L ++E
Sbjct: 170 FANENRGGVIILDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMN 229
Query: 309 MLKR 312
MLKR
Sbjct: 230 MLKR 233
>pir||D71215 hypothetical protein PH1988 - Pyrococcus horikoshii
>gi|3258432|dbj|BAA31115.1| (AP000007) 239aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 239
Score = 76.5 bits (185), Expect = 4e-13
Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 26/242 (10%)
Query: 82 LNLKYLLYVAPTSLASYMFF-LDRSEVITLVIVSLMLTLLAIMLAFKKVKLTSVFLVLLV 140
L+ ++++++ L+ Y F L RS + + + T L + + + + L F+ +
Sbjct: 7 LSYRFIVFLLFLILSIYAFVKLKRSPIEFKSVFTKSFTFLFLGVLIRGIDLLQAFVYI-- 64
Query: 141 LVSVFGYYSDLAKYLFVIIATTLGYFLIVETKIDLRKTILSPPSTGEELKLKPGVIFAET 200
YY ++ +II +GY T ++ K + E + G A +
Sbjct: 65 -----PYYEEIHIIGHIIILGGIGY-----TYVEFMKNLERFFFPEEPIFKGEGAYLARS 114
Query: 201 IPEDIL----KVALVFSRKPGK----GERWFWVTKLKSSDVNTIEPTNLPKILSLAVDYL 252
E + K LV +R P K R WVT SS + PT+L IL L + ++
Sbjct: 115 YEEVLSLIKNKRVLVITRNPTKYRNLASRVIWVT---SSGEKGVHPTSLHVILDLCIRFI 171
Query: 253 KKK--GVVVIDCLDYLILENGFESVIKFMAHLRDYAVMHGSSVIILGPLEGLSDKEKVML 310
K+ G+V+IDC+++L L NGF SV KF+ L+D +M G +II+ + ++ +L
Sbjct: 172 KENRGGIVLIDCVEFLTLYNGFPSVFKFLTGLKDNVLMRGGKIIIMVNPNAIDKRDLSLL 231
Query: 311 KR 312
+R
Sbjct: 232 ER 233
>pir||D71182 hypothetical protein PH1737 - Pyrococcus horikoshii
>gi|3258168|dbj|BAA30851.1| (AP000007) 237aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 237
Score = 76.1 bits (184), Expect = 5e-13
Identities = 64/242 (26%), Positives = 112/242 (45%), Gaps = 30/242 (12%)
Query: 86 YLLYVAPTSLASYMFFLDRSEVITLVIVSLMLTLLAIMLAFKKVKLTSVFLVLLVLVSVF 145
YLL + Y +S ++ L+ +SL L + +A VK+ + + L+ ++VF
Sbjct: 2 YLLTFILIRINKYSDKAKKSAILVLLFLSLGAILKILEIADPSVKMDYI-IQLVYSLTVF 60
Query: 146 GYYSDLAKYLFVIIATTLGYFLIVETKIDLRKTILSPPSTGEELKL---------KPGVI 196
G + L+ Y+ FL + + + P + G E KL + ++
Sbjct: 61 GAFVALSFYI---------KFLETPPSLTVHHSTKLPKNGGSEPKLVGAYLVSGSRSRIV 111
Query: 197 FAETIPEDILKVALVFSRKP------GKGERWFWVTKLKSSDVNTIEPTNLPKILSLAVD 250
+ ++ LVF+R P G+ + W+T+ I PT L I A+
Sbjct: 112 DLINMIRELNAPILVFTRYPTFYQDLGENIKVIWITQASEDG---IPPTKLHVIQDYAIK 168
Query: 251 YLK--KKGVVVIDCLDYLILENGFESVIKFMAHLRDYAVMHGSSVIILGPLEGLSDKEKV 308
+ K K VV+IDC++YL+L N F SV KF+A L+DY +M S++++ + L +K
Sbjct: 169 FAKENKYAVVIIDCVEYLLLYNEFASVFKFLASLKDYLIMMNSALVLAVDEKALDEKYYT 228
Query: 309 ML 310
+L
Sbjct: 229 LL 230
>pir||B75143 hypothetical protein PAB0205 - Pyrococcus abyssi (strain Orsay)
>gi|5457735|emb|CAB49225.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 242
Score = 71.8 bits (173), Expect = 1e-11
Identities = 64/235 (27%), Positives = 117/235 (49%), Gaps = 40/235 (17%)
Query: 110 LVIVSLMLTLLAIMLAFKK----VKLTSVFLVLLVLVSVFGYYSD-LAKYLFVIIATTL- 163
+V + L+ L+++++ +K +K ++ +++L+ + VF + L + V I ++L
Sbjct: 7 IVFLGLLYFLVSLLVRIRKFSGSIKRFALIIIVLLGIDVFLKGVEMLYNHSLVSIVSSLA 66
Query: 164 --GYFLIVETKIDLRKTILSPPSTGEELKLK-----PGVIFAETIP-------------E 203
G F+I+ + K + +PP +++K+ G + A IP +
Sbjct: 67 LFGVFVILSLGL---KHLEAPPMKVQQVKVSMNGENSGFVGAYIIPGSRSRIVDLINMIK 123
Query: 204 DILKVALVFSRKP------GKGERWFWVTKLKSSDVNTIEPTNLPKILSLAVDYLK--KK 255
++ LVF+R P G+ R W+T+ I PT L I A+ + + K
Sbjct: 124 ELNAPVLVFTRYPSFYRNLGENIRVVWITQASEDG---IPPTKLHVIQDYAIRFARENKN 180
Query: 256 GVVVIDCLDYLILENGFESVIKFMAHLRDYAVMHGSSVIILGPLEGLSDKEKVML 310
V++IDCL+YL+L N F SV KF+A+L+D+ VM S++I+ + L K ML
Sbjct: 181 AVIIIDCLEYLLLYNEFSSVFKFLANLKDHLVMMNSALILAVDQKALETKYYNML 235
>pir||H75180 hypothetical protein PAB0416 - Pyrococcus abyssi (strain Orsay)
>gi|5458037|emb|CAB49527.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 366
Score = 69.9 bits (168), Expect = 4e-11
Identities = 79/352 (22%), Positives = 157/352 (44%), Gaps = 64/352 (18%)
Query: 16 VIYVVLFYHYHISRNSSYLMYFSLAFLSLGVGIMVED----------------------A 53
+++++ FY + I + ++ +LAF S +G++ + A
Sbjct: 12 LMWILSFYRW-IRKREPLMIIITLAFWSDFLGVLTQPIVSKMLGVSPDVSNISPLMSTYA 70
Query: 54 YLAGL-AFFSSFFWIGVIQFL-RRLGGFKGLNLKYLLYVAPTSLASYMFFLDRSEVITLV 111
L G+ F ++ + +G I+ ++ F + L V T + + + V+ +
Sbjct: 71 LLEGIFLFLATMYTLGTIKKAWAQVTSFVVFQVGSLYIVLSTIFKADLPVISAFSVLFMG 130
Query: 112 IVSLMLTLLAIMLAFKKVKLTSVFLVLLVLVSVFGY------YSDLAKYLF-------VI 158
I ++L + + + + ++F + L+L+ YS LA YL+ V+
Sbjct: 131 ISMILLGISLLKREIESRGIAALFPIGLILLGSINLTYPLLVYSKLAPYLYGAGAVFRVL 190
Query: 159 IATTLGYFLIVETKIDLRKTILSPPSTGEELKLKPGVIFAETIPED---ILKVAL----- 210
+ L + I E K PP +E+ LKPG + + E I+K+ L
Sbjct: 191 MIIGLFKYTIFEVK---------PPKI-QEIILKPGAFYTDNESEFESVIMKMQLSGNGV 240
Query: 211 VFSRKPGKGERWF---WVTKLKSS----DVNTIEPTNLPKILSLAVDYLKK-KGVVVIDC 262
+ +RK K F W+TK+ S +V I+P+++ ++ L +L+K VV +D
Sbjct: 241 LITRKLPKMSPTFPVFWITKVTSGRIDENVTAIQPSDIGILIDLVKRHLEKGHSVVAMDA 300
Query: 263 LDYLILENGFESVIKFMAHLRDYAVMHGSSVIILGPLEGLSDKEKVMLKRAL 314
+YL++ENGFE +KF+ L+D+ + ++I+ + DK+ ++ R L
Sbjct: 301 FEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQAYQDKQWSVIAREL 352
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.146 0.420
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109034219
Number of Sequences: 2977
Number of extensions: 4344773
Number of successful extensions: 16069
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 16060
Number of HSP's gapped (non-prelim): 9
length of query: 319
length of database: 189,106,746
effective HSP length: 53
effective length of query: 266
effective length of database: 157,386,935
effective search space: 41864924710
effective search space used: 41864924710
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 165 (68.7 bits)