BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0445 (PAB0445) DE:Hypothetical protein
(186 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75106 hypothetical protein PAB0445 - Pyrococcus abyssi (st... 374 e-103
pir||E71027 hypothetical protein PH1513 - Pyrococcus horikoshii ... 303 8e-82
gi|11499116 conserved hypothetical protein [Archaeoglobus fulgid... 221 5e-57
gb|AAK43008.1| Conserved hypothetical protein [Sulfolobus solfat... 111 7e-24
pir||B72368 conserved hypothetical protein - Thermotoga maritima... 111 7e-24
pir||B75291 conserved hypothetical protein - Deinococcus radiodu... 92 3e-18
pir||T18653 hypothetical protein B0035.3 - Caenorhabditis elegan... 92 5e-18
pir||T35937 hypothetical protein SC9B5.17 - Streptomyces coelico... 87 1e-16
emb|CAC12232.1| (AL445066) conserved hypothetical protein [Therm... 85 5e-16
pir||I39569 hypothetical protein 2 gbd-region [imported] - Alcal... 85 7e-16
gb|AAF81228.1| (AF263012) unknown [Streptomyces griseus subsp. g... 83 3e-15
pir||B64847 hypothetical protein b1045 - Escherichia coli >gi|17... 82 4e-15
gi|7662500 LRP16 protein [Homo sapiens] >gi|6525027|gb|AAF15294.... 78 5e-14
pir||E83182 conserved hypothetical protein PA3693 [imported] - P... 78 9e-14
dbj|BAA86582.1| (AB033094) KIAA1268 protein [Homo sapiens] 76 3e-13
>pir||H75106 hypothetical protein PAB0445 - Pyrococcus abyssi (strain Orsay)
>gi|5458080|emb|CAB49569.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 186
Score = 374 bits (951), Expect = e-103
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MRKMFRVVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQ 60
MRKMFRVVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQ
Sbjct: 1 MRKMFRVVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQ 60
Query: 61 IGRDWIEHGEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADE 120
IGRDWIEHGEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADE
Sbjct: 61 IGRDWIEHGEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADE 120
Query: 121 LGVRSIAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDYEVALKV 180
LGVRSIAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDYEVALKV
Sbjct: 121 LGVRSIAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDYEVALKV 180
Query: 181 LERDEL 186
LERDEL
Sbjct: 181 LERDEL 186
>pir||E71027 hypothetical protein PH1513 - Pyrococcus horikoshii
>gi|3257938|dbj|BAA30621.1| (AP000006) 190aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 190
Score = 303 bits (768), Expect = 8e-82
Identities = 145/181 (80%), Positives = 166/181 (91%)
Query: 1 MRKMFRVVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQ 60
M MF++V GDIT+F+AEAIVNAANKYLEHGGGVAYAIAKAASGDVSEY RISKEEMR+Q
Sbjct: 1 MITMFKIVRGDITKFRAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYTRISKEEMRRQ 60
Query: 61 IGRDWIEHGEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADE 120
+G+DWIEHGEVVVTPP+ L +NGVKYVIHTVGPYCGG W +DK +KL+LAILGALKKADE
Sbjct: 61 LGKDWIEHGEVVVTPPMKLKENGVKYVIHTVGPYCGGVWSKDKEEKLKLAILGALKKADE 120
Query: 121 LGVRSIAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDYEVALKV 180
LGV+SIAFPAISAGIYGCPL+EVV+TFK VV EFLK A +V +VYLVLYSERDY++AL+
Sbjct: 121 LGVKSIAFPAISAGIYGCPLKEVVRTFKEVVKEFLKVANHVKEVYLVLYSERDYKLALET 180
Query: 181 L 181
+
Sbjct: 181 I 181
>gi|11499116 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483133|pir||H69439 conserved hypothetical protein
AF1521 - Archaeoglobus fulgidus
>gi|2649040|gb|AAB89725.1| (AE000997) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 199
Score = 221 bits (557), Expect = 5e-57
Identities = 110/178 (61%), Positives = 135/178 (75%), Gaps = 2/178 (1%)
Query: 6 RVVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQIGRDW 65
++ GDIT++ A+AIVNAANK LEHGGGVAYAIAKA +GD Y ISK+ MR+Q GRD+
Sbjct: 22 KLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDY 81
Query: 66 IEHGEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADELGVRS 125
I+HGEVVVTP +NL + G+KYV HTVGP C G W E+ ++KL A LG L+KA+E+GV S
Sbjct: 82 IDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVES 141
Query: 126 IAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDYEVALKVLER 183
IAFPA+SAGIYGC LE+VV+TF V F SA V +V LV+Y + EVALKV ER
Sbjct: 142 IAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSA--VKEVALVIYDRKSAEVALKVFER 197
>gb|AAK43008.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 177
Score = 111 bits (274), Expect = 7e-24
Identities = 73/170 (42%), Positives = 97/170 (56%), Gaps = 15/170 (8%)
Query: 7 VVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQIGRDWI 66
++ GDIT +A+AIVNAAN YL+HGGGVAYAI + I+ +E K+ G +
Sbjct: 12 LIKGDITEIEADAIVNAANSYLQHGGGVAYAIVRKG----GYIIQKESDEYVKKFGP--V 65
Query: 67 EHGEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADELGVRSI 126
GEV VT + K KYVIH VGP G + ++ KLE AI +L KADEL + SI
Sbjct: 66 PVGEVAVT---SAGKLKAKYVIHAVGPRYGIEGED----KLESAIFKSLLKADELSLSSI 118
Query: 127 AFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDYEV 176
A PAIS GIYG P E + V+ + K + V + LY++ Y+V
Sbjct: 119 AMPAISTGIYGYPFEICARIMANVLKGY--KPKTLRKVMICLYTKDAYDV 166
>pir||B72368 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981020|gb|AAD35593.1|AE001727_5 (AE001727)
conserved hypothetical protein [Thermotoga maritima]
Length = 599
Score = 111 bits (274), Expect = 7e-24
Identities = 70/161 (43%), Positives = 95/161 (58%), Gaps = 12/161 (7%)
Query: 3 KMFRVVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQIG 62
K R+V GDITR + +AIVNAAN+YL+HGGGVA AI +A + E + + ++ G
Sbjct: 427 KKIRIVKGDITREEVDAIVNAANEYLKHGGGVAGAIVRAGGSVIQE----ESDRIVQERG 482
Query: 63 RDWIEHGEVVVTPPLNLAKNGVKYVIHTVGP-YCGGKWDEDKRKKLELAILGALKKADEL 121
R + GE VVT + K KYVIHTVGP + GG ED + L A+ AL +A EL
Sbjct: 483 R--VPTGEAVVT---SAGKLKAKYVIHTVGPVWRGGSHGED--ELLYKAVYNALLRAHEL 535
Query: 122 GVRSIAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVT 162
++SI+ PAIS GI+G P E V F + +F+ + T
Sbjct: 536 KLKSISMPAISTGIFGFPKERAVGIFSKAIRDFIDQHPDTT 576
>pir||B75291 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6460097|gb|AAF11835.1|AE002061_2 (AE002061)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 170
Score = 92.4 bits (226), Expect = 3e-18
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 24/181 (13%)
Query: 7 VVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQIGRDWI 66
+V GDI +A+V AANK L GGGV I +AA + + IR IG
Sbjct: 5 LVQGDIAHQPVDAVVTAANKQLMGGGGVDGVIHRAAGPRLLQAIR--------PIGGT-- 54
Query: 67 EHGEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADELGV--- 123
G V+TP +L + GVKYVIH VGP W + + EL + GA +++ LGV
Sbjct: 55 PTGTAVITPAFDLERQGVKYVIHAVGPI----WRGGQHGEAEL-LAGAYRESLRLGVENG 109
Query: 124 -RSIAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDYEVALKVLE 182
RS+AFP+IS G+YG PL+ + +FL+S +++ V +VLY AL V E
Sbjct: 110 CRSVAFPSISTGVYGYPLDRAAPIALATIQDFLRSHPDLS-VRMVLYGAD----ALHVFE 164
Query: 183 R 183
R
Sbjct: 165 R 165
>pir||T18653 hypothetical protein B0035.3 - Caenorhabditis elegans
>gi|3873699|emb|CAA97408.1| (Z73102) predicted using
Genefinder~Similarity to viral non-structural proteins
(SW:POLN_EEVV3), contains similarity to Pfam domain:
PF01661 (Domain of unknown function), Score=212.3,
E-value=2.4e-60, N=1~cDNA EST yk68b6.3 comes from this
gene~cDNA EST>
Length = 203
Score = 91.7 bits (224), Expect = 5e-18
Identities = 60/171 (35%), Positives = 89/171 (51%), Gaps = 21/171 (12%)
Query: 10 GDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQIGRDWIEH- 68
GDIT+ +AIVNAAN L GGGV AI +AA RKQ+ + ++
Sbjct: 31 GDITKLSVDAIVNAANSRLAGGGGVDGAIHRAAG--------------RKQLQEECQQYN 76
Query: 69 ----GEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADELGVR 124
G+ V+T N+ N +K +IHTVGP G +++R+ L +L A E G++
Sbjct: 77 GCAVGDAVITSGCNI--NHIKKIIHTVGPQVYGNVTDERRENLVACYRTSLDIAIENGMK 134
Query: 125 SIAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDYE 175
SIAF IS G+YG P ++ KT + E+L+ + + LV + + D E
Sbjct: 135 SIAFCCISTGVYGYPNDDAAKTVTNFLTEYLEKNDTIERIVLVTFLDIDNE 185
>pir||T35937 hypothetical protein SC9B5.17 - Streptomyces coelicolor
>gi|4158196|emb|CAA22759.1| (AL035206) hypothetical
protein SC9B5.17 [Streptomyces coelicolor A3(2)]
Length = 169
Score = 87.4 bits (213), Expect = 1e-16
Identities = 62/170 (36%), Positives = 89/170 (51%), Gaps = 14/170 (8%)
Query: 7 VVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDV-SEYIRISKEEMRKQIGRDW 65
+V GDITR A+AIVNAAN L GGGV AI + + +E R+ + K +
Sbjct: 6 LVQGDITRQSADAIVNAANSSLLGGGGVDGAIHRRGGPAILAECRRLRAGHLGKGLPT-- 63
Query: 66 IEHGEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADELGVRS 125
G V T +L ++VIHTVGP ED+ L +L+ ADELG R+
Sbjct: 64 ---GRAVATTAGDL---DARWVIHTVGPVWSAT--EDRSGLLASCYRESLRTADELGART 115
Query: 126 IAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDYE 175
+AFPAIS G+Y P+++ ++ V + +VT++ VL+ R YE
Sbjct: 116 VAFPAISTGVYRWPMDDAA---RIAVETVATTKTSVTEIRFVLFDARAYE 162
>emb|CAC12232.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 213
Score = 85.0 bits (207), Expect = 5e-16
Identities = 65/170 (38%), Positives = 85/170 (49%), Gaps = 12/170 (7%)
Query: 4 MFRVVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVS-EYIRISKEEMRKQIG 62
M V GDIT AEAIVNAAN L GGGV AI AA +++ E ++I +E
Sbjct: 27 MLAVEVGDITESDAEAIVNAANSSLMGGGGVDGAIHSAAGPELNGELVKIRRERY----- 81
Query: 63 RDWIEHGEVVVTPPLNLAKNGVKYVIHTVGP-YCGGKWDEDKRKKLELAILGALKKADEL 121
+ + GE V+T L ++IHTVGP + GG+ ED L + L A E
Sbjct: 82 PNGLPPGEAVITRGYRLK---ASHIIHTVGPVWMGGRNGED--DVLYRSYRSCLDLAREF 136
Query: 122 GVRSIAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSE 171
G+ IAFPA+S G YG P + + V +FLK V V Y+E
Sbjct: 137 GIHDIAFPALSTGAYGFPFDRAERIAIRSVIDFLKDESAGYTVRFVFYTE 186
>pir||I39569 hypothetical protein 2 gbd-region [imported] - Alcaligenes
eutrophus >gi|695280|gb|AAC41426.1| (L36817) ORF2
[Ralstonia eutropha] >gi|1093467|prf||2104199H ORF 2
[Ralstonia eutropha]
Length = 173
Score = 84.7 bits (206), Expect = 7e-16
Identities = 60/171 (35%), Positives = 84/171 (49%), Gaps = 10/171 (5%)
Query: 6 RVVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQIGRDW 65
+VVHGDITR + +AIVNAAN L GGGV AI A + E R ++ +
Sbjct: 7 QVVHGDITRMEVDAIVNAANSGLLGGGGVDGAIHGAGGSAIKEACRAIRDT------QGG 60
Query: 66 IEHGEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADELGVRS 125
GE V+T +L YVIH VGP G D+ + + L A +++ A + +R
Sbjct: 61 CPTGEAVITTGGHLP---APYVIHAVGPVWQG-GDQGEDELLANAYRNSIRLAAQHHLRR 116
Query: 126 IAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDYEV 176
+AFP IS GIY P E V E L +A + V V + + +Y +
Sbjct: 117 LAFPNISTGIYAFPRERAADIAIAAVREALAAAPEIEQVTFVCFDDENYRL 167
>gb|AAF81228.1| (AF263012) unknown [Streptomyces griseus subsp. griseus]
Length = 177
Score = 82.7 bits (201), Expect = 3e-15
Identities = 60/169 (35%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 6 RVVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQIGRDW 65
R+V GDIT + IVNAAN L GGGV AI + D+ R E+R
Sbjct: 10 RLVRGDITDQSVDVIVNAANSSLLGGGGVDGAIHRRGGPDILAACR----ELRASRYGKG 65
Query: 66 IEHGEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADELGVRS 125
+ G+ V T L ++++HTVGP G +D+ L +L+ A ELG RS
Sbjct: 66 LPTGQAVATTAGRL---DARWIVHTVGPVFSGA--QDRSALLASCYRESLRLAAELGARS 120
Query: 126 IAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDY 174
IAFPAIS GIYG P+++ + V ++ + V +V VL+ Y
Sbjct: 121 IAFPAISTGIYGWPMDDGARI--AVRTVLAETVEPVEEVRFVLFDAHAY 167
>pir||B64847 hypothetical protein b1045 - Escherichia coli
>gi|1787283|gb|AAC74129.1| (AE000206) putative
polyprotein [Escherichia coli K12]
>gi|4062616|dbj|BAA35835.1| (D90741) ORF2 [Escherichia
coli] >gi|4062622|dbj|BAA35843.1| (D90742) ORF2
[Escherichia coli]
Length = 177
Score = 81.9 bits (199), Expect = 4e-15
Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 12/182 (6%)
Query: 1 MRKMFRVVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQ 60
M+ VV GDIT+ + IVNAAN L GGGV AI +AA + + ++R+Q
Sbjct: 1 MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACL----KVRQQ 56
Query: 61 IGRDWIEHGEVVVTPPLNLAKNGVKYVIHTVGP-YCGGKWDEDKRKKLELAILGALKKAD 119
G H + + L K V+HTVGP + GG+ +ED+ L+ A L +L+
Sbjct: 57 QGDCPTGHAVITLAGDLP-----AKAVVHTVGPVWRGGEQNEDQL--LQDAYLNSLRLVA 109
Query: 120 ELGVRSIAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTDVYLVLYSERDYEVALK 179
S+AFPAIS G+YG P + V+EF+ VY V Y E + + +
Sbjct: 110 ANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYER 169
Query: 180 VL 181
+L
Sbjct: 170 LL 171
>gi|7662500 LRP16 protein [Homo sapiens] >gi|6525027|gb|AAF15294.1|AF202922_1
(AF202922) LRP16 [Homo sapiens]
Length = 243
Score = 78.4 bits (190), Expect = 5e-14
Identities = 53/177 (29%), Positives = 88/177 (48%), Gaps = 14/177 (7%)
Query: 1 MRKMFRVVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQ 60
+ + ++ DIT+ + +AIVNAAN L GGGV I +AA +++ R +
Sbjct: 68 LNEKISLLRSDITKLEVDAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQS----- 122
Query: 61 IGRDWIEHGEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADE 120
+ G+ +T L KYVIHTVGP G+ + +L L +L E
Sbjct: 123 -----CKTGKAKITGGYRLP---AKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLE 174
Query: 121 LGVRSIAFPAISAGIYGCPLEEVVKTFKLVVNEFLKSAKNVTD-VYLVLYSERDYEV 176
+RS+AFP IS G++G P E + + E+L+ K+ D + + ++ E+D ++
Sbjct: 175 HRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDKVDRLIICVFLEKDEDI 231
>pir||E83182 conserved hypothetical protein PA3693 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949858|gb|AAG07081.1|AE004789_1 (AE004789)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 173
Score = 77.6 bits (188), Expect = 9e-14
Identities = 55/137 (40%), Positives = 70/137 (50%), Gaps = 14/137 (10%)
Query: 6 RVVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDVSEYIRISKEEMRKQIGRDW 65
RV GDITR +AIVNAAN L GGGV AI +AA ++ R+
Sbjct: 5 RVWQGDITRLAVDAIVNAANSSLLGGGGVDGAIHRAAGAELVAACRL----------LHG 54
Query: 66 IEHGEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADELGVRS 125
+ GE +T L +VIHTVGP G D + + L +L A++ G S
Sbjct: 55 CKTGEAKITRGFRLP---AAHVIHTVGPVWRG-GDNGEAELLASCYRRSLALAEQAGAAS 110
Query: 126 IAFPAISAGIYGCPLEE 142
+AFPAIS GIYG PLE+
Sbjct: 111 VAFPAISCGIYGYPLEQ 127
>dbj|BAA86582.1| (AB033094) KIAA1268 protein [Homo sapiens]
Length = 1023
Score = 76.1 bits (184), Expect = 3e-13
Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 7 VVHGDITRFKAEAIVNAANKYLEHGGGVAYAIAKAASGDV-SEYIRISKEEMRKQIGRDW 65
V GD+ R + +VNA+N+ L+H GG+A A++KAA ++ ++ +I K E R G
Sbjct: 149 VQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNAT 208
Query: 66 IEHGEVVVTPPLNLAKNGVKYVIHTVGPYCGGKWDEDKRKKLELAILGALKKADELGVRS 125
I K +VIH VGP G L A+ +L A++ RS
Sbjct: 209 IS----------KAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRS 258
Query: 126 IAFPAISAGIYGCPLEEVVKTFKLVVNE---FLKSAKNVTDVYLVLYSERDYE 175
IA PAIS+G++G PL V+T + E F K + ++YLV SE+ E
Sbjct: 259 IAIPAISSGVFGFPLGRCVETIVSAIKENFQFKKDGHCLKEIYLVDVSEKTVE 311
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.395
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65797077
Number of Sequences: 2977
Number of extensions: 2589601
Number of successful extensions: 8231
Number of sequences better than 1.0e-10: 15
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 8204
Number of HSP's gapped (non-prelim): 17
length of query: 186
length of database: 189,106,746
effective HSP length: 55
effective length of query: 131
effective length of database: 156,189,961
effective search space: 20460884891
effective search space used: 20460884891
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)