BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0452 (PAB0452) DE:virR related
(184 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75107 virr related PAB0452 - Pyrococcus abyssi (strain Ors... 379 e-104
pir||D72406 conserved hypothetical protein - Thermotoga maritima... 145 4e-34
gi|11498045 conserved hypothetical protein [Archaeoglobus fulgid... 142 3e-33
sp|O27825|YH97_METTH HYPOTHETICAL PROTEIN MTH1797 >gi|7429985|pi... 122 4e-27
gi|11497857 conserved hypothetical protein [Archaeoglobus fulgid... 114 7e-25
gb|AAF59182.1| (AE003839) CG12822 gene product [Drosophila melan... 109 2e-23
pir||H72721 hypothetical protein APE0313 - Aeropyrum pernix (str... 101 6e-21
sp|P44740|YAEB_HAEIN HYPOTHETICAL PROTEIN HI0510 >gi|1074430|pir... 98 7e-20
gb|AAK43269.1| VirR related conserved hypothetical protein [Sulf... 98 9e-20
pir||G83221 conserved hypothetical protein PA3388 [imported] - P... 96 4e-19
gb|AAD31609.1|AF065246_3 (AF065246) VirH [Agrobacterium tumefaci... 94 1e-18
gi|10955172 virR [Agrobacterium tumefaciens] >gi|3915275|sp|O522... 94 1e-18
sp|O68638|RCSF_PSEAE RCSF PROTEIN >gi|2970668|gb|AAC62539.1| (AF... 92 3e-18
sp|P28634|YAEB_ECOLI HYPOTHETICAL 26.4 KDA PROTEIN IN PROS-RCSF ... 88 6e-17
dbj|BAA91013.1| (AK000213) unnamed protein product [Homo sapiens] 88 6e-17
pir||A82269 conserved hypothetical protein VC0876 [imported] - V... 86 3e-16
pir||T02903 hypothetical protein T13J8.130 - Arabidopsis thalian... 85 7e-16
gi|7705519 hypothetical protein [Homo sapiens] >gi|7106828|gb|AA... 82 6e-15
pir||D81001 conserved hypothetical protein NMB2158 [imported] - ... 82 6e-15
gi|11526461 hypothetical protein [Homo sapiens] 82 6e-15
pir||A82019 hypothetical protein NMA0245 [imported] - Neisseria ... 81 1e-14
pir||C75141 virr related protein PAB1744 - Pyrococcus abyssi (st... 71 9e-12
sp|P37752|YAEB_EIKCO HYPOTHETICAL PROTEIN IN ECPA 5'REGION 69 3e-11
>pir||G75107 virr related PAB0452 - Pyrococcus abyssi (strain Orsay)
>gi|5458087|emb|CAB49576.1| (AJ248285) virR related
[Pyrococcus abyssi]
Length = 184
Score = 379 bits (962), Expect = e-104
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MVLPLMICYRPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIIL 60
MVLPLMICYRPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIIL
Sbjct: 1 MVLPLMICYRPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIIL 60
Query: 61 IYHFHRAKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDIL 120
IYHFHRAKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDIL
Sbjct: 61 IYHFHRAKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDIL 120
Query: 121 DGTPLLDIKPYVPEFDVRENVRIGWLEKNVHKLEKARDDGRFFSLNFNYIFPASLLEAPE 180
DGTPLLDIKPYVPEFDVRENVRIGWLEKNVHKLEKARDDGRFFSLNFNYIFPASLLEAPE
Sbjct: 121 DGTPLLDIKPYVPEFDVRENVRIGWLEKNVHKLEKARDDGRFFSLNFNYIFPASLLEAPE 180
Query: 181 RAKL 184
RAKL
Sbjct: 181 RAKL 184
>pir||D72406 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980684|gb|AAD35280.1|AE001704_1 (AE001704)
conserved hypothetical protein [Thermotoga maritima]
Length = 143
Score = 145 bits (362), Expect = 4e-34
Identities = 69/143 (48%), Positives = 96/143 (66%), Gaps = 1/143 (0%)
Query: 6 MICYRPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIILIYHFH 65
M + IG+I SPFK P + P Q +++ T+E+FPE+ EGLKDIE +H+I++Y
Sbjct: 1 MFLLKQIGVIRSPFKSPSECPFQGRFSQE-RFTIELFPEYEEGLKDIETCTHLIVLYWLD 59
Query: 66 RAKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTPL 125
RA L+ P + +HGVFATR+P RPNPIG SVV+L+E +G L + +D +DGTP+
Sbjct: 60 RANRDRLIAIPPFDKREHGVFATRSPHRPNPIGFSVVKLLEVRGRELVVEGLDAVDGTPV 119
Query: 126 LDIKPYVPEFDVRENVRIGWLEK 148
+DIKPY + D EN RIGW E+
Sbjct: 120 VDIKPYSSKIDCVENARIGWFEE 142
>gi|11498045 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3915359|sp|O29816|Y433_ARCFU HYPOTHETICAL PROTEIN
AF0433 >gi|7483009|pir||A69304 conserved hypothetical
protein AF0433 - Archaeoglobus fulgidus
>gi|2650198|gb|AAB90804.1| (AE001075) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 366
Score = 142 bits (354), Expect = 3e-33
Identities = 67/144 (46%), Positives = 95/144 (65%), Gaps = 1/144 (0%)
Query: 5 LMICYRPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIILIYHF 64
+++ R +G+I SP+K P Q +K+ +E+FPEF +GLKDIE +H+I++Y
Sbjct: 2 MLVQLRQVGVIRSPYKNFSKAPHQGRFSKETV-EIEIFPEFEDGLKDIETCTHLIVLYWL 60
Query: 65 HRAKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTP 124
RA LLV P +HGVFATR+P RPNPIG +VV L+ER G +L+++ +D LDGTP
Sbjct: 61 DRANRDALLVVPPHDSREHGVFATRSPHRPNPIGFAVVELLERDGRVLKVKGLDALDGTP 120
Query: 125 LLDIKPYVPEFDVRENVRIGWLEK 148
++DIKPY D N +IGW E+
Sbjct: 121 VVDIKPYSSTIDSVGNAKIGWFEE 144
>sp|O27825|YH97_METTH HYPOTHETICAL PROTEIN MTH1797 >gi|7429985|pir||A69107 conserved
hypothetical protein MTH1797 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622929|gb|AAB86263.1| (AE000934) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 137
Score = 122 bits (302), Expect = 4e-27
Identities = 58/127 (45%), Positives = 84/127 (65%), Gaps = 2/127 (1%)
Query: 10 RPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIILIYHFHRAKF 69
RP+G++ SPFK D P Q + + E + +FPE+ + + +E FSHI ++Y H A+
Sbjct: 9 RPVGVVRSPFKTRSDAPAQGRFSSE-ESEIHIFPEYLDAVDGLELFSHIFVLYWLHLAER 67
Query: 70 KGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTPLLDIK 129
L V P +K GVF+TRAPARPNP+G+ +V L+E G ILR+R +D LDG+P++DIK
Sbjct: 68 NVLRVVPRGKRKKRGVFSTRAPARPNPVGLCLVELLE-CGEILRVRGLDALDGSPVIDIK 126
Query: 130 PYVPEFD 136
PY + D
Sbjct: 127 PYYEDID 133
>gi|11497857 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3915351|sp|O29998|Y241_ARCFU HYPOTHETICAL PROTEIN
AF0241 >gi|7429984|pir||A69280 conserved hypothetical
protein AF0241 - Archaeoglobus fulgidus
>gi|2650400|gb|AAB90992.1| (AE001089) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 139
Score = 114 bits (283), Expect = 7e-25
Identities = 56/127 (44%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Query: 10 RPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIILIYHFHRAKF 69
+PIG++ SPFK D P Q + D + +F E+++GL IE HII++Y +A
Sbjct: 4 KPIGVVKSPFKTQNDAPRQGRFS-DAVSEIAIFDEYADGLHKIENLRHIIVLYWMDKASR 62
Query: 70 KGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTPLLDIK 129
L V P E+ GVF TR+P+RPNPIG+ VV ++E + N L++R +D LDG+P++DIK
Sbjct: 63 DKLRVVPPGETEERGVFTTRSPSRPNPIGLCVVEILEVERNRLKVRWLDALDGSPVIDIK 122
Query: 130 PYVPEFD 136
Y PE D
Sbjct: 123 KYSPEID 129
>gb|AAF59182.1| (AE003839) CG12822 gene product [Drosophila melanogaster]
Length = 412
Score = 109 bits (271), Expect = 2e-23
Identities = 58/153 (37%), Positives = 92/153 (59%), Gaps = 7/153 (4%)
Query: 9 YRPIGIIHSPFKEPKDVPIQASAAKDIEGTVE----VFPEFSEGLKDIEEFSHIILIYHF 64
+RPIG+I + F E + VP Q+ + G ++ VF L+ +E+FSH+ LIYHF
Sbjct: 100 FRPIGVIRTAFPEKRAVPRQSIVGSRLRGIIQLNDGVFTNPEHSLEGLEDFSHLWLIYHF 159
Query: 65 HRAKF--KGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDG 122
HR K + P + E+ GVF+TR+P RP PIG+S+V + + + + D++DG
Sbjct: 160 HRNNSHPKAKVAPPRLGGERVGVFSTRSPHRPCPIGLSLVEIEKIENATISFFGTDMVDG 219
Query: 123 TPLLDIKPYVPEFDVRE-NVRIGWLEKNVHKLE 154
TP+LDIKPY+P +D +V G L++N +++
Sbjct: 220 TPVLDIKPYIPHYDAPSLSVDSGTLDENQAEMQ 252
>pir||H72721 hypothetical protein APE0313 - Aeropyrum pernix (strain K1)
>gi|5103952|dbj|BAA79268.1| (AP000059) 168aa long
hypothetical protein [Aeropyrum pernix]
Length = 168
Score = 101 bits (249), Expect = 6e-21
Identities = 61/170 (35%), Positives = 97/170 (56%), Gaps = 15/170 (8%)
Query: 1 MVLPLMICYRPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIIL 60
MV + I RPIG + D ++ + +EG +EV PE++ GL + FSHII+
Sbjct: 1 MVSGVEIVLRPIGFVSHGLP---DSTVRENIG-GVEGFIEVLPEYAPGLDGLAGFSHIIV 56
Query: 61 IYHFHRAKFKGLLVEP-------YMHEE--KHGVFATRAPARPNPIGISVVRLVERKGNI 111
I + H++K + L V P + E+ + GVFAT +P+RPNP+ +++ RL++ +G
Sbjct: 57 IAYLHKSKGRALRVRPRGLLRLGFRLEDLPEVGVFATDSPSRPNPLALTIARLLDIEGRR 116
Query: 112 LRIRDVDILDGTPLLDIKPYVPEFDVRENVRIGWLEKNVHKLEKARDDGR 161
LR+ +D+ DGTP+LDIKPY P V + W ++ + E +R D R
Sbjct: 117 LRVSGLDLYDGTPVLDIKPYTPSRRVEDLSLPSWYKELLE--EASRRDPR 164
>sp|P44740|YAEB_HAEIN HYPOTHETICAL PROTEIN HI0510 >gi|1074430|pir||I64153 hypothetical
protein HI0510 - Haemophilus influenzae (strain Rd KW20)
>gi|1573491|gb|AAC22168.1| (U32732) conserved
hypothetical protein [Haemophilus influenzae Rd]
Length = 239
Score = 97.9 bits (240), Expect = 7e-20
Identities = 57/150 (38%), Positives = 92/150 (61%), Gaps = 10/150 (6%)
Query: 11 PIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFS--EGLKDIEEFSHIILIYHF---H 65
PI IIH+P+KE VP Q + +D G VE+ P ++ E ++ +E+FSH+ LI+ F
Sbjct: 8 PIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLIFQFDQIQ 67
Query: 66 RAKFKGLLVEPYM-HEEKHGVFATRAPARPNPIGISVVRLVERK---GNI-LRIRDVDIL 120
+ K++ + P + ++ GVFA+RA RPNP+G+S V L + + GNI L + VD++
Sbjct: 68 QGKWQPTVRPPRLGGNQRVGVFASRATHRPNPLGLSKVELRQVECINGNIFLHLGAVDLV 127
Query: 121 DGTPLLDIKPYVPEFDVRENVRIGWLEKNV 150
DGTP+ DIKPY+ D N + + ++ +
Sbjct: 128 DGTPIFDIKPYIAYADSEPNAQSSFAQEKL 157
>gb|AAK43269.1| VirR related conserved hypothetical protein [Sulfolobus
solfataricus]
Length = 124
Score = 97.5 bits (239), Expect = 9e-20
Identities = 50/95 (52%), Positives = 65/95 (67%), Gaps = 7/95 (7%)
Query: 39 VEVFPEFSEGLKDIEEFSHIILIYHFHRAKFKGLLVEPYMHEEKH---GVFATRAPARPN 95
+ V E+ EGLK +EEFSHII+IYH H A F G L + E+K G+FATR+ RPN
Sbjct: 26 IHVNKEYEEGLKGLEEFSHIIVIYHLHLASFDGRL----LREKKGVTVGIFATRSQFRPN 81
Query: 96 PIGISVVRLVERKGNILRIRDVDILDGTPLLDIKP 130
PIGISV L+E KGNI+ + ++ + TP+LDIKP
Sbjct: 82 PIGISVAELIEIKGNIVLAKGINAFNNTPVLDIKP 116
>pir||G83221 conserved hypothetical protein PA3388 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|5833452|gb|AAD53515.1|AF148964_2 (AF148964) RcsF
[Pseudomonas aeruginosa]
>gi|9949524|gb|AAG06776.1|AE004760_4 (AE004760)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 231
Score = 95.6 bits (234), Expect = 4e-19
Identities = 61/140 (43%), Positives = 81/140 (57%), Gaps = 6/140 (4%)
Query: 11 PIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFS--EGLKDIEEFSHIILIYHFHRA- 67
PIG I S F E +P Q A GT+E+ P F E L+ +E+ SH+ L++ FH+A
Sbjct: 7 PIGYIRSCFMEKFAIPRQPLLAPAARGTLELLPPFDQVEALEGLEQVSHVWLLFLFHQAL 66
Query: 68 --KFKGLLVEPYMHEEKH-GVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTP 124
K + + P + + GVFATRA RPN IG SVVRL + L + +D+LDGTP
Sbjct: 67 EDKPRLKVRPPRLGGNRSLGVFATRATHRPNGIGQSVVRLEGFEAGRLWLSGIDLLDGTP 126
Query: 125 LLDIKPYVPEFDVRENVRIG 144
+LDIKPYVP D + R G
Sbjct: 127 VLDIKPYVPYADAVADARNG 146
>gb|AAD31609.1|AF065246_3 (AF065246) VirH [Agrobacterium tumefaciens]
Length = 163
Score = 94.0 bits (230), Expect = 1e-18
Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 12 IGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIILIYHFHRAKFKG 71
+G I +P+K D P Q S + + T+E+ ++ LK +E +S + ++Y H++
Sbjct: 26 VGKIRTPWKSRADTPRQGSESGPL-CTLEISEPWAVALKGVEAYSQLEVLYWLHQSPRDI 84
Query: 72 LLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTPLLDIKP 130
+L+ P E HG F+ RAP RPNPIG S+V++ GN + +R +D LDGTPLLDIKP
Sbjct: 85 VLLSPADDGEIHGAFSLRAPVRPNPIGTSIVKVERVSGNSIVVRGLDCLDGTPLLDIKP 143
>gi|10955172 virR [Agrobacterium tumefaciens] >gi|3915275|sp|O52278|VIRR_AGRTU
VIRR PROTEIN >gi|2687608|gb|AAB91563.1| (AF242881) virR
[Agrobacterium tumefaciens]
Length = 175
Score = 93.6 bits (229), Expect = 1e-18
Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 12 IGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIILIYHFHRAKFKG 71
+G I +P+K D P Q S + T+E+ ++ LK +E +S + ++Y H +
Sbjct: 38 VGKIRTPWKSRSDTPRQGSELGPL-CTLEISEPWAVALKGVEAYSRLEILYWLHESPRDI 96
Query: 72 LLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTPLLDIKP 130
+L+ P E HG F+ RAP RPNPIG S+V++ GN + +R +D LDGTPLLDIKP
Sbjct: 97 VLLSPADDGEIHGAFSLRAPVRPNPIGTSIVKVERVSGNSIVVRGLDCLDGTPLLDIKP 155
>sp|O68638|RCSF_PSEAE RCSF PROTEIN >gi|2970668|gb|AAC62539.1| (AF052586) regulator
protein [Pseudomonas aeruginosa]
Length = 240
Score = 92.4 bits (226), Expect = 3e-18
Identities = 56/133 (42%), Positives = 78/133 (58%), Gaps = 6/133 (4%)
Query: 11 PIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEG--LKDIEEFSHIILIYHFHRA- 67
PIG + S FKE +P Q A G +E+ P F G ++ +E+ SH+ LI+ FH+A
Sbjct: 7 PIGHVRSCFKEKFAIPRQPQLAPAATGVLELLPPFDTGDAVEGLEQVSHVWLIFLFHQAL 66
Query: 68 -KFKGLLVEPYM--HEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTP 124
L V P + GVFATRA RPN +G SVV+L + + L + +D+LDGTP
Sbjct: 67 EDKPRLKVRPPRLGGNQSMGVFATRATHRPNGLGQSVVKLEKVEPGRLWLSGIDLLDGTP 126
Query: 125 LLDIKPYVPEFDV 137
++DIKPYVP D+
Sbjct: 127 VIDIKPYVPYADI 139
>sp|P28634|YAEB_ECOLI HYPOTHETICAL 26.4 KDA PROTEIN IN PROS-RCSF INTERGENIC REGION (ORF3)
>gi|7466995|pir||C64744 yaeB protein - Escherichia coli
>gi|303558|dbj|BAA03655.1| (D15061) ORF235 [Escherichia
coli] >gi|1552771|gb|AAB08623.1| (U70214) hypothetical
[Escherichia coli] >gi|1786393|gb|AAC73306.1| (AE000128)
orf, hypothetical protein [Escherichia coli K12]
>gi|4902937|dbj|BAA77871.1| (D83536) Hypothetical 26.4
kd protein in proS-rcsF intergenic region (orf3).
[Escherichia coli]
Length = 235
Score = 88.2 bits (215), Expect = 6e-17
Identities = 50/135 (37%), Positives = 79/135 (58%), Gaps = 10/135 (7%)
Query: 9 YRPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEG--LKDIEEFSHIILIYHFHR 66
+ IG+I SP+KE VP Q K G + + +++ ++ +E FSH+ +++ FH+
Sbjct: 6 FEQIGVIRSPYKEKFAVPRQPGLVKSANGELHLIAPYNQADAVRGLEAFSHLWILFVFHQ 65
Query: 67 AKFKGL--LVEPYM--HEEKHGVFATRAPARPNPIGISVVRLVE----RKGNILRIRDVD 118
G V P + GVFATR+ RPNPIG+S+V L E + IL++ +D
Sbjct: 66 TMEGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGMSLVELKEVVCHKDSVILKLGSLD 125
Query: 119 ILDGTPLLDIKPYVP 133
++DGTP++DIKPY+P
Sbjct: 126 LVDGTPVVDIKPYLP 140
>dbj|BAA91013.1| (AK000213) unnamed protein product [Homo sapiens]
Length = 441
Score = 88.2 bits (215), Expect = 6e-17
Identities = 45/138 (32%), Positives = 76/138 (54%), Gaps = 7/138 (5%)
Query: 11 PIGIIHSPFKEPKDVPIQASAAKDIEGTVEV----FPEFSEGLKDIEEFSHIILIYHFHR 66
P+G + S F P Q S + + F L +E+FSH+ +++ FH+
Sbjct: 32 PVGYLESCFSAKNGTPRQPSICSYSRACLRIRKRIFNNPEHSLMGLEQFSHVWILFVFHK 91
Query: 67 ---AKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGT 123
K + P ++ K GVF+TR+P RPN IG+++ +L + +G + + +D++ GT
Sbjct: 92 NGHLSCKAKVQPPRLNGAKTGVFSTRSPHRPNAIGLTLAKLEKVEGGAIYLSGIDMIHGT 151
Query: 124 PLLDIKPYVPEFDVRENV 141
P+LDIKPY+ E+D +NV
Sbjct: 152 PVLDIKPYIAEYDSPQNV 169
>pir||A82269 conserved hypothetical protein VC0876 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655330|gb|AAF94038.1|
(AE004172) conserved hypothetical protein [Vibrio
cholerae]
Length = 231
Score = 85.8 bits (209), Expect = 3e-16
Identities = 55/153 (35%), Positives = 89/153 (57%), Gaps = 10/153 (6%)
Query: 11 PIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFS--EGLKDIEEFSHIILIYHFHR-- 66
PI II SP++E VP Q V++ E + E ++ IE+FSH+ L++ F +
Sbjct: 6 PIAIIESPYQEKFAVPRQPRLVPSATARVKLLGECNCAESIRGIEQFSHVWLLFLFDQNL 65
Query: 67 -AKFKGLLVEPYMH-EEKHGVFATRAPARPNPIGISVVRL--VERKGN--ILRIRDVDIL 120
A +K + P + E+ GVFA+RA RPN IG+S V L V ++G+ L + VD++
Sbjct: 66 AAGWKPTVRPPRLGGNERVGVFASRATFRPNGIGMSAVELKGVSKEGDQYYLELGSVDLV 125
Query: 121 DGTPLLDIKPYVPEFDVRENVRIGWLEKNVHKL 153
+GTP++DIKPY+P D + + G+ E+ ++
Sbjct: 126 NGTPIIDIKPYIPYSDSITDAQGGYAEQEPQRM 158
>pir||T02903 hypothetical protein T13J8.130 - Arabidopsis thaliana
>gi|4455361|emb|CAB36771.1| (AL035524) putative protein
[Arabidopsis thaliana] >gi|7269656|emb|CAB79604.1|
(AL161572) putative protein [Arabidopsis thaliana]
Length = 358
Score = 84.7 bits (206), Expect = 7e-16
Identities = 51/156 (32%), Positives = 82/156 (51%), Gaps = 16/156 (10%)
Query: 10 RPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEF--SEGLKDIEEFSHIILIYHFH-- 65
RPIG I S F P Q + P L+ +EE+SH ++Y FH
Sbjct: 174 RPIGTIQSCFSTRNGTPRQPLLVSLARACLIFDPALVPPASLEGLEEYSHCWILYVFHLN 233
Query: 66 -----------RAKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRI 114
++K K + P ++ E+ GVFATR+P RP PIG++V ++ E + + + +
Sbjct: 234 TDIEKLWRKPSQSKLKAKVRVPRLNGERKGVFATRSPHRPCPIGLTVAKVEEIQKDKVLL 293
Query: 115 RDVDILDGTPLLDIKPYVPEFDVRENVRI-GWLEKN 149
VD++DGTP+LDIKPY+P D + + W++++
Sbjct: 294 SGVDLVDGTPVLDIKPYLPYSDSIQGASVPNWVKED 329
>gi|7705519 hypothetical protein [Homo sapiens]
>gi|7106828|gb|AAF36139.1|AF151053_1 (AF151053) HSPC219
[Homo sapiens]
Length = 157
Score = 81.5 bits (198), Expect = 6e-15
Identities = 36/93 (38%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Query: 52 IEEFSHIILIYHFHR---AKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERK 108
+E+FSH+ +++ FH+ K + P ++ K GVF+TR+P RPN IG+++ +L + +
Sbjct: 3 LEQFSHVWILFVFHKNGHLSCKAKVQPPRLNGAKTGVFSTRSPHRPNAIGLTLAKLEKVE 62
Query: 109 GNILRIRDVDILDGTPLLDIKPYVPEFDVRENV 141
G + + +D++ GTP+LDIKPY+ E+D +NV
Sbjct: 63 GGAIYLSGIDMIHGTPVLDIKPYIAEYDSPQNV 95
>pir||D81001 conserved hypothetical protein NMB2158 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7227416|gb|AAF42466.1| (AE002563) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 226
Score = 81.5 bits (198), Expect = 6e-15
Identities = 48/152 (31%), Positives = 87/152 (56%), Gaps = 8/152 (5%)
Query: 11 PIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFS-EGLKDIEEFSHIILIYHFHRAKF 69
PIG SP+K+ + Q + +E+ P+F+ + ++ +E+F ++ + + FH
Sbjct: 7 PIGTARSPYKQKFGIARQPGLVSAAKACIELNPKFTADSVRGLEDFDYVWISFIFHGVLD 66
Query: 70 KGL--LVEPYM--HEEKHGVFATRAPARPNPIGISVVRLVE-RKGNILRI--RDVDILDG 122
+G +V P ++K GVFATR+P RPN +G+S+++L G +R+ D+LDG
Sbjct: 67 EGWAQMVRPPRLGGKQKMGVFATRSPHRPNHLGLSLLKLERIETGKPVRLYCSGADLLDG 126
Query: 123 TPLLDIKPYVPEFDVRENVRIGWLEKNVHKLE 154
TP++DIKPY+P + + + G++ +LE
Sbjct: 127 TPIVDIKPYIPFVESKPDAASGFVSGKPVELE 158
>gi|11526461 hypothetical protein [Homo sapiens]
Length = 157
Score = 81.5 bits (198), Expect = 6e-15
Identities = 36/93 (38%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Query: 52 IEEFSHIILIYHFHR---AKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERK 108
+E+FSH+ +++ FH+ K + P ++ K GVF+TR+P RPN IG+++ +L + +
Sbjct: 3 LEQFSHVWILFVFHKNGHLSCKAKVQPPRLNGAKTGVFSTRSPHRPNAIGLTLAKLEKVE 62
Query: 109 GNILRIRDVDILDGTPLLDIKPYVPEFDVRENV 141
G + + +D++ GTP+LDIKPY+ E+D +NV
Sbjct: 63 GGAIYLSGIDMIHGTPVLDIKPYIAEYDSPQNV 95
>pir||A82019 hypothetical protein NMA0245 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379007|emb|CAB83553.1|
(AL162752) hypothetical protein NMA0245 [Neisseria
meningitidis Z2491]
Length = 226
Score = 80.8 bits (196), Expect = 1e-14
Identities = 49/152 (32%), Positives = 86/152 (56%), Gaps = 8/152 (5%)
Query: 11 PIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFS-EGLKDIEEFSHIILIYHFHRAKF 69
PI SP+K+ + Q E +E+ PEF+ + ++ +E+F ++ + + FH
Sbjct: 7 PIATARSPYKQKFGIARQPGLVSAAEVCIELNPEFTADSVRGLEDFDYVWISFIFHGVLD 66
Query: 70 KGL--LVEPYM--HEEKHGVFATRAPARPNPIGISVVRLVE-RKGNILRI--RDVDILDG 122
+G +V P ++K GVFATR+P RPN +G+S+++L G +R+ D+LDG
Sbjct: 67 EGWAQMVRPPRLGGKQKMGVFATRSPHRPNHLGLSLLKLNRIETGKPVRLYCSGADLLDG 126
Query: 123 TPLLDIKPYVPEFDVRENVRIGWLEKNVHKLE 154
TP++DIKPY+P + + + G++ +LE
Sbjct: 127 TPIVDIKPYIPFVESKPDAASGFVSGKPVELE 158
>pir||C75141 virr related protein PAB1744 - Pyrococcus abyssi (strain Orsay)
>gi|5458355|emb|CAB49844.1| (AJ248285) VIRR RELATED
PROTEIN [Pyrococcus abyssi]
Length = 226
Score = 71.0 bits (171), Expect = 9e-12
Identities = 45/126 (35%), Positives = 70/126 (54%), Gaps = 7/126 (5%)
Query: 33 KDIEGTVEVFPEFSEGLKDIEEFSHIILIYHFHRAKF----KGLLVEPYMHEEK--HGVF 86
K + +E+ PEF + ++ +++ I LI FH++ K L V PY + + GVF
Sbjct: 26 KGADTFIEILPEFLDAIEGLQDGDWIKLILWFHKSDKPELRKILKVHPYGNPKNPLRGVF 85
Query: 87 ATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTPLLDIKPYVPEFDVRENVRIGWL 146
ATR+P RPNP+ + V++ E N + I +D DGTP++DIK +V +D N I
Sbjct: 86 ATRSPYRPNPLALYTVKIREISDNRIYIDWIDADDGTPVVDIKIFVERYDC-PNESIEER 144
Query: 147 EKNVHK 152
E N+ K
Sbjct: 145 EVNIPK 150
>sp|P37752|YAEB_EIKCO HYPOTHETICAL PROTEIN IN ECPA 5'REGION
Length = 176
Score = 69.1 bits (166), Expect = 3e-11
Identities = 42/98 (42%), Positives = 60/98 (60%), Gaps = 7/98 (7%)
Query: 55 FSHIILIYHFHRAKFKGL--LVEPYM--HEEKHGVFATRAPARPNPIGISVVRL--VERK 108
FSHI + + FH G LV P K GVFATR+P RPNP+G+S+++L +E +
Sbjct: 2 FSHIWVQFVFHGVAGAGWQPLVRPPRLGGNRKMGVFATRSPFRPNPLGLSLLKLERIETE 61
Query: 109 GNI-LRIRDVDILDGTPLLDIKPYVPEFDVRENVRIGW 145
G + L D+LDGTP+LDIKPY+P + + + G+
Sbjct: 62 GGVRLWCGGADLLDGTPVLDIKPYLPFVEAQPDAAPGF 99
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.145 0.434
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72638519
Number of Sequences: 2977
Number of extensions: 3059988
Number of successful extensions: 7893
Number of sequences better than 1.0e-10: 23
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 7847
Number of HSP's gapped (non-prelim): 23
length of query: 184
length of database: 189,106,746
effective HSP length: 50
effective length of query: 134
effective length of database: 159,182,396
effective search space: 21330441064
effective search space used: 21330441064
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)