BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0452 (PAB0452) DE:virR related
         (184 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75107 virr related PAB0452 - Pyrococcus abyssi (strain Ors...   379  e-104
pir||D72406 conserved hypothetical protein - Thermotoga maritima...   145  4e-34
gi|11498045 conserved hypothetical protein [Archaeoglobus fulgid...   142  3e-33
sp|O27825|YH97_METTH HYPOTHETICAL PROTEIN MTH1797 >gi|7429985|pi...   122  4e-27
gi|11497857 conserved hypothetical protein [Archaeoglobus fulgid...   114  7e-25
gb|AAF59182.1| (AE003839) CG12822 gene product [Drosophila melan...   109  2e-23
pir||H72721 hypothetical protein APE0313 - Aeropyrum pernix (str...   101  6e-21
sp|P44740|YAEB_HAEIN HYPOTHETICAL PROTEIN HI0510 >gi|1074430|pir...    98  7e-20
gb|AAK43269.1| VirR related conserved hypothetical protein [Sulf...    98  9e-20
pir||G83221 conserved hypothetical protein PA3388 [imported] - P...    96  4e-19
gb|AAD31609.1|AF065246_3 (AF065246) VirH [Agrobacterium tumefaci...    94  1e-18
gi|10955172 virR [Agrobacterium tumefaciens] >gi|3915275|sp|O522...    94  1e-18
sp|O68638|RCSF_PSEAE RCSF PROTEIN >gi|2970668|gb|AAC62539.1| (AF...    92  3e-18
sp|P28634|YAEB_ECOLI HYPOTHETICAL 26.4 KDA PROTEIN IN PROS-RCSF ...    88  6e-17
dbj|BAA91013.1| (AK000213) unnamed protein product [Homo sapiens]      88  6e-17
pir||A82269 conserved hypothetical protein VC0876 [imported] - V...    86  3e-16
pir||T02903 hypothetical protein T13J8.130 - Arabidopsis thalian...    85  7e-16
gi|7705519 hypothetical protein [Homo sapiens] >gi|7106828|gb|AA...    82  6e-15
pir||D81001 conserved hypothetical protein NMB2158 [imported] - ...    82  6e-15
gi|11526461 hypothetical protein [Homo sapiens]                        82  6e-15
pir||A82019 hypothetical protein NMA0245 [imported] - Neisseria ...    81  1e-14
pir||C75141 virr related protein PAB1744 - Pyrococcus abyssi (st...    71  9e-12
sp|P37752|YAEB_EIKCO HYPOTHETICAL PROTEIN IN ECPA 5'REGION             69  3e-11

>pir||G75107 virr related PAB0452 - Pyrococcus abyssi (strain Orsay)
           >gi|5458087|emb|CAB49576.1| (AJ248285) virR related
           [Pyrococcus abyssi]
           Length = 184
           
 Score =  379 bits (962), Expect = e-104
 Identities = 184/184 (100%), Positives = 184/184 (100%)

Query: 1   MVLPLMICYRPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIIL 60
           MVLPLMICYRPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIIL
Sbjct: 1   MVLPLMICYRPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIIL 60

Query: 61  IYHFHRAKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDIL 120
           IYHFHRAKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDIL
Sbjct: 61  IYHFHRAKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDIL 120

Query: 121 DGTPLLDIKPYVPEFDVRENVRIGWLEKNVHKLEKARDDGRFFSLNFNYIFPASLLEAPE 180
           DGTPLLDIKPYVPEFDVRENVRIGWLEKNVHKLEKARDDGRFFSLNFNYIFPASLLEAPE
Sbjct: 121 DGTPLLDIKPYVPEFDVRENVRIGWLEKNVHKLEKARDDGRFFSLNFNYIFPASLLEAPE 180

Query: 181 RAKL 184
           RAKL
Sbjct: 181 RAKL 184


>pir||D72406 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4980684|gb|AAD35280.1|AE001704_1 (AE001704)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 143
           
 Score =  145 bits (362), Expect = 4e-34
 Identities = 69/143 (48%), Positives = 96/143 (66%), Gaps = 1/143 (0%)

Query: 6   MICYRPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIILIYHFH 65
           M   + IG+I SPFK P + P Q   +++   T+E+FPE+ EGLKDIE  +H+I++Y   
Sbjct: 1   MFLLKQIGVIRSPFKSPSECPFQGRFSQE-RFTIELFPEYEEGLKDIETCTHLIVLYWLD 59

Query: 66  RAKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTPL 125
           RA    L+  P   + +HGVFATR+P RPNPIG SVV+L+E +G  L +  +D +DGTP+
Sbjct: 60  RANRDRLIAIPPFDKREHGVFATRSPHRPNPIGFSVVKLLEVRGRELVVEGLDAVDGTPV 119

Query: 126 LDIKPYVPEFDVRENVRIGWLEK 148
           +DIKPY  + D  EN RIGW E+
Sbjct: 120 VDIKPYSSKIDCVENARIGWFEE 142


>gi|11498045 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|3915359|sp|O29816|Y433_ARCFU HYPOTHETICAL PROTEIN
           AF0433 >gi|7483009|pir||A69304 conserved hypothetical
           protein AF0433 - Archaeoglobus fulgidus
           >gi|2650198|gb|AAB90804.1| (AE001075) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 366
           
 Score =  142 bits (354), Expect = 3e-33
 Identities = 67/144 (46%), Positives = 95/144 (65%), Gaps = 1/144 (0%)

Query: 5   LMICYRPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIILIYHF 64
           +++  R +G+I SP+K     P Q   +K+    +E+FPEF +GLKDIE  +H+I++Y  
Sbjct: 2   MLVQLRQVGVIRSPYKNFSKAPHQGRFSKETV-EIEIFPEFEDGLKDIETCTHLIVLYWL 60

Query: 65  HRAKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTP 124
            RA    LLV P     +HGVFATR+P RPNPIG +VV L+ER G +L+++ +D LDGTP
Sbjct: 61  DRANRDALLVVPPHDSREHGVFATRSPHRPNPIGFAVVELLERDGRVLKVKGLDALDGTP 120

Query: 125 LLDIKPYVPEFDVRENVRIGWLEK 148
           ++DIKPY    D   N +IGW E+
Sbjct: 121 VVDIKPYSSTIDSVGNAKIGWFEE 144


>sp|O27825|YH97_METTH HYPOTHETICAL PROTEIN MTH1797 >gi|7429985|pir||A69107 conserved
           hypothetical protein MTH1797 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622929|gb|AAB86263.1| (AE000934) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 137
           
 Score =  122 bits (302), Expect = 4e-27
 Identities = 58/127 (45%), Positives = 84/127 (65%), Gaps = 2/127 (1%)

Query: 10  RPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIILIYHFHRAKF 69
           RP+G++ SPFK   D P Q   + + E  + +FPE+ + +  +E FSHI ++Y  H A+ 
Sbjct: 9   RPVGVVRSPFKTRSDAPAQGRFSSE-ESEIHIFPEYLDAVDGLELFSHIFVLYWLHLAER 67

Query: 70  KGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTPLLDIK 129
             L V P    +K GVF+TRAPARPNP+G+ +V L+E  G ILR+R +D LDG+P++DIK
Sbjct: 68  NVLRVVPRGKRKKRGVFSTRAPARPNPVGLCLVELLE-CGEILRVRGLDALDGSPVIDIK 126

Query: 130 PYVPEFD 136
           PY  + D
Sbjct: 127 PYYEDID 133


>gi|11497857 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|3915351|sp|O29998|Y241_ARCFU HYPOTHETICAL PROTEIN
           AF0241 >gi|7429984|pir||A69280 conserved hypothetical
           protein AF0241 - Archaeoglobus fulgidus
           >gi|2650400|gb|AAB90992.1| (AE001089) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 139
           
 Score =  114 bits (283), Expect = 7e-25
 Identities = 56/127 (44%), Positives = 81/127 (63%), Gaps = 1/127 (0%)

Query: 10  RPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIILIYHFHRAKF 69
           +PIG++ SPFK   D P Q   + D    + +F E+++GL  IE   HII++Y   +A  
Sbjct: 4   KPIGVVKSPFKTQNDAPRQGRFS-DAVSEIAIFDEYADGLHKIENLRHIIVLYWMDKASR 62

Query: 70  KGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTPLLDIK 129
             L V P    E+ GVF TR+P+RPNPIG+ VV ++E + N L++R +D LDG+P++DIK
Sbjct: 63  DKLRVVPPGETEERGVFTTRSPSRPNPIGLCVVEILEVERNRLKVRWLDALDGSPVIDIK 122

Query: 130 PYVPEFD 136
            Y PE D
Sbjct: 123 KYSPEID 129


>gb|AAF59182.1| (AE003839) CG12822 gene product [Drosophila melanogaster]
           Length = 412
           
 Score =  109 bits (271), Expect = 2e-23
 Identities = 58/153 (37%), Positives = 92/153 (59%), Gaps = 7/153 (4%)

Query: 9   YRPIGIIHSPFKEPKDVPIQASAAKDIEGTVE----VFPEFSEGLKDIEEFSHIILIYHF 64
           +RPIG+I + F E + VP Q+     + G ++    VF      L+ +E+FSH+ LIYHF
Sbjct: 100 FRPIGVIRTAFPEKRAVPRQSIVGSRLRGIIQLNDGVFTNPEHSLEGLEDFSHLWLIYHF 159

Query: 65  HRAKF--KGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDG 122
           HR     K  +  P +  E+ GVF+TR+P RP PIG+S+V + + +   +     D++DG
Sbjct: 160 HRNNSHPKAKVAPPRLGGERVGVFSTRSPHRPCPIGLSLVEIEKIENATISFFGTDMVDG 219

Query: 123 TPLLDIKPYVPEFDVRE-NVRIGWLEKNVHKLE 154
           TP+LDIKPY+P +D    +V  G L++N  +++
Sbjct: 220 TPVLDIKPYIPHYDAPSLSVDSGTLDENQAEMQ 252


>pir||H72721 hypothetical protein APE0313 - Aeropyrum pernix (strain K1)
           >gi|5103952|dbj|BAA79268.1| (AP000059) 168aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 168
           
 Score =  101 bits (249), Expect = 6e-21
 Identities = 61/170 (35%), Positives = 97/170 (56%), Gaps = 15/170 (8%)

Query: 1   MVLPLMICYRPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIIL 60
           MV  + I  RPIG +        D  ++ +    +EG +EV PE++ GL  +  FSHII+
Sbjct: 1   MVSGVEIVLRPIGFVSHGLP---DSTVRENIG-GVEGFIEVLPEYAPGLDGLAGFSHIIV 56

Query: 61  IYHFHRAKFKGLLVEP-------YMHEE--KHGVFATRAPARPNPIGISVVRLVERKGNI 111
           I + H++K + L V P       +  E+  + GVFAT +P+RPNP+ +++ RL++ +G  
Sbjct: 57  IAYLHKSKGRALRVRPRGLLRLGFRLEDLPEVGVFATDSPSRPNPLALTIARLLDIEGRR 116

Query: 112 LRIRDVDILDGTPLLDIKPYVPEFDVRENVRIGWLEKNVHKLEKARDDGR 161
           LR+  +D+ DGTP+LDIKPY P   V +     W ++ +   E +R D R
Sbjct: 117 LRVSGLDLYDGTPVLDIKPYTPSRRVEDLSLPSWYKELLE--EASRRDPR 164


>sp|P44740|YAEB_HAEIN HYPOTHETICAL PROTEIN HI0510 >gi|1074430|pir||I64153 hypothetical
           protein HI0510 - Haemophilus influenzae (strain Rd KW20)
           >gi|1573491|gb|AAC22168.1| (U32732) conserved
           hypothetical protein [Haemophilus influenzae Rd]
           Length = 239
           
 Score = 97.9 bits (240), Expect = 7e-20
 Identities = 57/150 (38%), Positives = 92/150 (61%), Gaps = 10/150 (6%)

Query: 11  PIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFS--EGLKDIEEFSHIILIYHF---H 65
           PI IIH+P+KE   VP Q +  +D  G VE+ P ++  E ++ +E+FSH+ LI+ F    
Sbjct: 8   PIAIIHTPYKEKFSVPRQPNLVEDGVGIVELLPPYNSPEAVRGLEQFSHLWLIFQFDQIQ 67

Query: 66  RAKFKGLLVEPYM-HEEKHGVFATRAPARPNPIGISVVRLVERK---GNI-LRIRDVDIL 120
           + K++  +  P +   ++ GVFA+RA  RPNP+G+S V L + +   GNI L +  VD++
Sbjct: 68  QGKWQPTVRPPRLGGNQRVGVFASRATHRPNPLGLSKVELRQVECINGNIFLHLGAVDLV 127

Query: 121 DGTPLLDIKPYVPEFDVRENVRIGWLEKNV 150
           DGTP+ DIKPY+   D   N +  + ++ +
Sbjct: 128 DGTPIFDIKPYIAYADSEPNAQSSFAQEKL 157


>gb|AAK43269.1| VirR related conserved hypothetical protein [Sulfolobus
           solfataricus]
           Length = 124
           
 Score = 97.5 bits (239), Expect = 9e-20
 Identities = 50/95 (52%), Positives = 65/95 (67%), Gaps = 7/95 (7%)

Query: 39  VEVFPEFSEGLKDIEEFSHIILIYHFHRAKFKGLLVEPYMHEEKH---GVFATRAPARPN 95
           + V  E+ EGLK +EEFSHII+IYH H A F G L    + E+K    G+FATR+  RPN
Sbjct: 26  IHVNKEYEEGLKGLEEFSHIIVIYHLHLASFDGRL----LREKKGVTVGIFATRSQFRPN 81

Query: 96  PIGISVVRLVERKGNILRIRDVDILDGTPLLDIKP 130
           PIGISV  L+E KGNI+  + ++  + TP+LDIKP
Sbjct: 82  PIGISVAELIEIKGNIVLAKGINAFNNTPVLDIKP 116


>pir||G83221 conserved hypothetical protein PA3388 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|5833452|gb|AAD53515.1|AF148964_2 (AF148964) RcsF
           [Pseudomonas aeruginosa]
           >gi|9949524|gb|AAG06776.1|AE004760_4 (AE004760)
           conserved hypothetical protein [Pseudomonas aeruginosa]
           Length = 231
           
 Score = 95.6 bits (234), Expect = 4e-19
 Identities = 61/140 (43%), Positives = 81/140 (57%), Gaps = 6/140 (4%)

Query: 11  PIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFS--EGLKDIEEFSHIILIYHFHRA- 67
           PIG I S F E   +P Q   A    GT+E+ P F   E L+ +E+ SH+ L++ FH+A 
Sbjct: 7   PIGYIRSCFMEKFAIPRQPLLAPAARGTLELLPPFDQVEALEGLEQVSHVWLLFLFHQAL 66

Query: 68  --KFKGLLVEPYMHEEKH-GVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTP 124
             K +  +  P +   +  GVFATRA  RPN IG SVVRL   +   L +  +D+LDGTP
Sbjct: 67  EDKPRLKVRPPRLGGNRSLGVFATRATHRPNGIGQSVVRLEGFEAGRLWLSGIDLLDGTP 126

Query: 125 LLDIKPYVPEFDVRENVRIG 144
           +LDIKPYVP  D   + R G
Sbjct: 127 VLDIKPYVPYADAVADARNG 146


>gb|AAD31609.1|AF065246_3 (AF065246) VirH [Agrobacterium tumefaciens]
           Length = 163
           
 Score = 94.0 bits (230), Expect = 1e-18
 Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 1/119 (0%)

Query: 12  IGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIILIYHFHRAKFKG 71
           +G I +P+K   D P Q S +  +  T+E+   ++  LK +E +S + ++Y  H++    
Sbjct: 26  VGKIRTPWKSRADTPRQGSESGPL-CTLEISEPWAVALKGVEAYSQLEVLYWLHQSPRDI 84

Query: 72  LLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTPLLDIKP 130
           +L+ P    E HG F+ RAP RPNPIG S+V++    GN + +R +D LDGTPLLDIKP
Sbjct: 85  VLLSPADDGEIHGAFSLRAPVRPNPIGTSIVKVERVSGNSIVVRGLDCLDGTPLLDIKP 143


>gi|10955172 virR [Agrobacterium tumefaciens] >gi|3915275|sp|O52278|VIRR_AGRTU
           VIRR PROTEIN >gi|2687608|gb|AAB91563.1| (AF242881) virR
           [Agrobacterium tumefaciens]
           Length = 175
           
 Score = 93.6 bits (229), Expect = 1e-18
 Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 1/119 (0%)

Query: 12  IGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEGLKDIEEFSHIILIYHFHRAKFKG 71
           +G I +P+K   D P Q S    +  T+E+   ++  LK +E +S + ++Y  H +    
Sbjct: 38  VGKIRTPWKSRSDTPRQGSELGPL-CTLEISEPWAVALKGVEAYSRLEILYWLHESPRDI 96

Query: 72  LLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTPLLDIKP 130
           +L+ P    E HG F+ RAP RPNPIG S+V++    GN + +R +D LDGTPLLDIKP
Sbjct: 97  VLLSPADDGEIHGAFSLRAPVRPNPIGTSIVKVERVSGNSIVVRGLDCLDGTPLLDIKP 155


>sp|O68638|RCSF_PSEAE RCSF PROTEIN >gi|2970668|gb|AAC62539.1| (AF052586) regulator
           protein [Pseudomonas aeruginosa]
           Length = 240
           
 Score = 92.4 bits (226), Expect = 3e-18
 Identities = 56/133 (42%), Positives = 78/133 (58%), Gaps = 6/133 (4%)

Query: 11  PIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEG--LKDIEEFSHIILIYHFHRA- 67
           PIG + S FKE   +P Q   A    G +E+ P F  G  ++ +E+ SH+ LI+ FH+A 
Sbjct: 7   PIGHVRSCFKEKFAIPRQPQLAPAATGVLELLPPFDTGDAVEGLEQVSHVWLIFLFHQAL 66

Query: 68  -KFKGLLVEPYM--HEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTP 124
                L V P      +  GVFATRA  RPN +G SVV+L + +   L +  +D+LDGTP
Sbjct: 67  EDKPRLKVRPPRLGGNQSMGVFATRATHRPNGLGQSVVKLEKVEPGRLWLSGIDLLDGTP 126

Query: 125 LLDIKPYVPEFDV 137
           ++DIKPYVP  D+
Sbjct: 127 VIDIKPYVPYADI 139


>sp|P28634|YAEB_ECOLI HYPOTHETICAL 26.4 KDA PROTEIN IN PROS-RCSF INTERGENIC REGION (ORF3)
           >gi|7466995|pir||C64744 yaeB protein - Escherichia coli
           >gi|303558|dbj|BAA03655.1| (D15061) ORF235 [Escherichia
           coli] >gi|1552771|gb|AAB08623.1| (U70214) hypothetical
           [Escherichia coli] >gi|1786393|gb|AAC73306.1| (AE000128)
           orf, hypothetical protein [Escherichia coli K12]
           >gi|4902937|dbj|BAA77871.1| (D83536) Hypothetical 26.4
           kd protein in proS-rcsF intergenic region (orf3).
           [Escherichia coli]
           Length = 235
           
 Score = 88.2 bits (215), Expect = 6e-17
 Identities = 50/135 (37%), Positives = 79/135 (58%), Gaps = 10/135 (7%)

Query: 9   YRPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFSEG--LKDIEEFSHIILIYHFHR 66
           +  IG+I SP+KE   VP Q    K   G + +   +++   ++ +E FSH+ +++ FH+
Sbjct: 6   FEQIGVIRSPYKEKFAVPRQPGLVKSANGELHLIAPYNQADAVRGLEAFSHLWILFVFHQ 65

Query: 67  AKFKGL--LVEPYM--HEEKHGVFATRAPARPNPIGISVVRLVE----RKGNILRIRDVD 118
               G    V P       + GVFATR+  RPNPIG+S+V L E    +   IL++  +D
Sbjct: 66  TMEGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGMSLVELKEVVCHKDSVILKLGSLD 125

Query: 119 ILDGTPLLDIKPYVP 133
           ++DGTP++DIKPY+P
Sbjct: 126 LVDGTPVVDIKPYLP 140


>dbj|BAA91013.1| (AK000213) unnamed protein product [Homo sapiens]
           Length = 441
           
 Score = 88.2 bits (215), Expect = 6e-17
 Identities = 45/138 (32%), Positives = 76/138 (54%), Gaps = 7/138 (5%)

Query: 11  PIGIIHSPFKEPKDVPIQASAAKDIEGTVEV----FPEFSEGLKDIEEFSHIILIYHFHR 66
           P+G + S F      P Q S        + +    F      L  +E+FSH+ +++ FH+
Sbjct: 32  PVGYLESCFSAKNGTPRQPSICSYSRACLRIRKRIFNNPEHSLMGLEQFSHVWILFVFHK 91

Query: 67  ---AKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGT 123
                 K  +  P ++  K GVF+TR+P RPN IG+++ +L + +G  + +  +D++ GT
Sbjct: 92  NGHLSCKAKVQPPRLNGAKTGVFSTRSPHRPNAIGLTLAKLEKVEGGAIYLSGIDMIHGT 151

Query: 124 PLLDIKPYVPEFDVRENV 141
           P+LDIKPY+ E+D  +NV
Sbjct: 152 PVLDIKPYIAEYDSPQNV 169


>pir||A82269 conserved hypothetical protein VC0876 [imported] - Vibrio cholerae
           (group O1 strain N16961) >gi|9655330|gb|AAF94038.1|
           (AE004172) conserved hypothetical protein [Vibrio
           cholerae]
           Length = 231
           
 Score = 85.8 bits (209), Expect = 3e-16
 Identities = 55/153 (35%), Positives = 89/153 (57%), Gaps = 10/153 (6%)

Query: 11  PIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFS--EGLKDIEEFSHIILIYHFHR-- 66
           PI II SP++E   VP Q          V++  E +  E ++ IE+FSH+ L++ F +  
Sbjct: 6   PIAIIESPYQEKFAVPRQPRLVPSATARVKLLGECNCAESIRGIEQFSHVWLLFLFDQNL 65

Query: 67  -AKFKGLLVEPYMH-EEKHGVFATRAPARPNPIGISVVRL--VERKGN--ILRIRDVDIL 120
            A +K  +  P +   E+ GVFA+RA  RPN IG+S V L  V ++G+   L +  VD++
Sbjct: 66  AAGWKPTVRPPRLGGNERVGVFASRATFRPNGIGMSAVELKGVSKEGDQYYLELGSVDLV 125

Query: 121 DGTPLLDIKPYVPEFDVRENVRIGWLEKNVHKL 153
           +GTP++DIKPY+P  D   + + G+ E+   ++
Sbjct: 126 NGTPIIDIKPYIPYSDSITDAQGGYAEQEPQRM 158


>pir||T02903 hypothetical protein T13J8.130 - Arabidopsis thaliana
           >gi|4455361|emb|CAB36771.1| (AL035524) putative protein
           [Arabidopsis thaliana] >gi|7269656|emb|CAB79604.1|
           (AL161572) putative protein [Arabidopsis thaliana]
           Length = 358
           
 Score = 84.7 bits (206), Expect = 7e-16
 Identities = 51/156 (32%), Positives = 82/156 (51%), Gaps = 16/156 (10%)

Query: 10  RPIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEF--SEGLKDIEEFSHIILIYHFH-- 65
           RPIG I S F      P Q          +   P       L+ +EE+SH  ++Y FH  
Sbjct: 174 RPIGTIQSCFSTRNGTPRQPLLVSLARACLIFDPALVPPASLEGLEEYSHCWILYVFHLN 233

Query: 66  -----------RAKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERKGNILRI 114
                      ++K K  +  P ++ E+ GVFATR+P RP PIG++V ++ E + + + +
Sbjct: 234 TDIEKLWRKPSQSKLKAKVRVPRLNGERKGVFATRSPHRPCPIGLTVAKVEEIQKDKVLL 293

Query: 115 RDVDILDGTPLLDIKPYVPEFDVRENVRI-GWLEKN 149
             VD++DGTP+LDIKPY+P  D  +   +  W++++
Sbjct: 294 SGVDLVDGTPVLDIKPYLPYSDSIQGASVPNWVKED 329


>gi|7705519 hypothetical protein [Homo sapiens]
           >gi|7106828|gb|AAF36139.1|AF151053_1 (AF151053) HSPC219
           [Homo sapiens]
           Length = 157
           
 Score = 81.5 bits (198), Expect = 6e-15
 Identities = 36/93 (38%), Positives = 63/93 (67%), Gaps = 3/93 (3%)

Query: 52  IEEFSHIILIYHFHR---AKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERK 108
           +E+FSH+ +++ FH+      K  +  P ++  K GVF+TR+P RPN IG+++ +L + +
Sbjct: 3   LEQFSHVWILFVFHKNGHLSCKAKVQPPRLNGAKTGVFSTRSPHRPNAIGLTLAKLEKVE 62

Query: 109 GNILRIRDVDILDGTPLLDIKPYVPEFDVRENV 141
           G  + +  +D++ GTP+LDIKPY+ E+D  +NV
Sbjct: 63  GGAIYLSGIDMIHGTPVLDIKPYIAEYDSPQNV 95


>pir||D81001 conserved hypothetical protein NMB2158 [imported] - Neisseria
           meningitidis (group B strain MD58)
           >gi|7227416|gb|AAF42466.1| (AE002563) conserved
           hypothetical protein [Neisseria meningitidis MC58]
           Length = 226
           
 Score = 81.5 bits (198), Expect = 6e-15
 Identities = 48/152 (31%), Positives = 87/152 (56%), Gaps = 8/152 (5%)

Query: 11  PIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFS-EGLKDIEEFSHIILIYHFHRAKF 69
           PIG   SP+K+   +  Q       +  +E+ P+F+ + ++ +E+F ++ + + FH    
Sbjct: 7   PIGTARSPYKQKFGIARQPGLVSAAKACIELNPKFTADSVRGLEDFDYVWISFIFHGVLD 66

Query: 70  KGL--LVEPYM--HEEKHGVFATRAPARPNPIGISVVRLVE-RKGNILRI--RDVDILDG 122
           +G   +V P     ++K GVFATR+P RPN +G+S+++L     G  +R+     D+LDG
Sbjct: 67  EGWAQMVRPPRLGGKQKMGVFATRSPHRPNHLGLSLLKLERIETGKPVRLYCSGADLLDG 126

Query: 123 TPLLDIKPYVPEFDVRENVRIGWLEKNVHKLE 154
           TP++DIKPY+P  + + +   G++     +LE
Sbjct: 127 TPIVDIKPYIPFVESKPDAASGFVSGKPVELE 158


>gi|11526461 hypothetical protein [Homo sapiens]
           Length = 157
           
 Score = 81.5 bits (198), Expect = 6e-15
 Identities = 36/93 (38%), Positives = 63/93 (67%), Gaps = 3/93 (3%)

Query: 52  IEEFSHIILIYHFHR---AKFKGLLVEPYMHEEKHGVFATRAPARPNPIGISVVRLVERK 108
           +E+FSH+ +++ FH+      K  +  P ++  K GVF+TR+P RPN IG+++ +L + +
Sbjct: 3   LEQFSHVWILFVFHKNGHLSCKAKVQPPRLNGAKTGVFSTRSPHRPNAIGLTLAKLEKVE 62

Query: 109 GNILRIRDVDILDGTPLLDIKPYVPEFDVRENV 141
           G  + +  +D++ GTP+LDIKPY+ E+D  +NV
Sbjct: 63  GGAIYLSGIDMIHGTPVLDIKPYIAEYDSPQNV 95


>pir||A82019 hypothetical protein NMA0245 [imported] - Neisseria meningitidis
           (group A strain Z2491) >gi|7379007|emb|CAB83553.1|
           (AL162752) hypothetical protein NMA0245 [Neisseria
           meningitidis Z2491]
           Length = 226
           
 Score = 80.8 bits (196), Expect = 1e-14
 Identities = 49/152 (32%), Positives = 86/152 (56%), Gaps = 8/152 (5%)

Query: 11  PIGIIHSPFKEPKDVPIQASAAKDIEGTVEVFPEFS-EGLKDIEEFSHIILIYHFHRAKF 69
           PI    SP+K+   +  Q       E  +E+ PEF+ + ++ +E+F ++ + + FH    
Sbjct: 7   PIATARSPYKQKFGIARQPGLVSAAEVCIELNPEFTADSVRGLEDFDYVWISFIFHGVLD 66

Query: 70  KGL--LVEPYM--HEEKHGVFATRAPARPNPIGISVVRLVE-RKGNILRI--RDVDILDG 122
           +G   +V P     ++K GVFATR+P RPN +G+S+++L     G  +R+     D+LDG
Sbjct: 67  EGWAQMVRPPRLGGKQKMGVFATRSPHRPNHLGLSLLKLNRIETGKPVRLYCSGADLLDG 126

Query: 123 TPLLDIKPYVPEFDVRENVRIGWLEKNVHKLE 154
           TP++DIKPY+P  + + +   G++     +LE
Sbjct: 127 TPIVDIKPYIPFVESKPDAASGFVSGKPVELE 158


>pir||C75141 virr related protein PAB1744 - Pyrococcus abyssi (strain Orsay)
           >gi|5458355|emb|CAB49844.1| (AJ248285) VIRR RELATED
           PROTEIN [Pyrococcus abyssi]
           Length = 226
           
 Score = 71.0 bits (171), Expect = 9e-12
 Identities = 45/126 (35%), Positives = 70/126 (54%), Gaps = 7/126 (5%)

Query: 33  KDIEGTVEVFPEFSEGLKDIEEFSHIILIYHFHRAKF----KGLLVEPYMHEEK--HGVF 86
           K  +  +E+ PEF + ++ +++   I LI  FH++      K L V PY + +    GVF
Sbjct: 26  KGADTFIEILPEFLDAIEGLQDGDWIKLILWFHKSDKPELRKILKVHPYGNPKNPLRGVF 85

Query: 87  ATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTPLLDIKPYVPEFDVRENVRIGWL 146
           ATR+P RPNP+ +  V++ E   N + I  +D  DGTP++DIK +V  +D   N  I   
Sbjct: 86  ATRSPYRPNPLALYTVKIREISDNRIYIDWIDADDGTPVVDIKIFVERYDC-PNESIEER 144

Query: 147 EKNVHK 152
           E N+ K
Sbjct: 145 EVNIPK 150


>sp|P37752|YAEB_EIKCO HYPOTHETICAL PROTEIN IN ECPA 5'REGION
           Length = 176
           
 Score = 69.1 bits (166), Expect = 3e-11
 Identities = 42/98 (42%), Positives = 60/98 (60%), Gaps = 7/98 (7%)

Query: 55  FSHIILIYHFHRAKFKGL--LVEPYM--HEEKHGVFATRAPARPNPIGISVVRL--VERK 108
           FSHI + + FH     G   LV P       K GVFATR+P RPNP+G+S+++L  +E +
Sbjct: 2   FSHIWVQFVFHGVAGAGWQPLVRPPRLGGNRKMGVFATRSPFRPNPLGLSLLKLERIETE 61

Query: 109 GNI-LRIRDVDILDGTPLLDIKPYVPEFDVRENVRIGW 145
           G + L     D+LDGTP+LDIKPY+P  + + +   G+
Sbjct: 62  GGVRLWCGGADLLDGTPVLDIKPYLPFVEAQPDAAPGF 99


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.145    0.434 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72638519
Number of Sequences: 2977
Number of extensions: 3059988
Number of successful extensions: 7893
Number of sequences better than 1.0e-10: 23
Number of HSP's better than  0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 7847
Number of HSP's gapped (non-prelim): 23
length of query: 184
length of database: 189,106,746
effective HSP length: 50
effective length of query: 134
effective length of database: 159,182,396
effective search space: 21330441064
effective search space used: 21330441064
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)