BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0453 622327 622725 133 !not a gene!
         (133 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71026 hypothetical protein PH1504 - Pyrococcus horikoshii ...   156  1e-37

>pir||D71026 hypothetical protein PH1504 - Pyrococcus horikoshii
           >gi|3257929|dbj|BAA30612.1| (AP000006) 107aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 107
           
 Score =  156 bits (390), Expect = 1e-37
 Identities = 80/107 (74%), Positives = 88/107 (81%)

Query: 27  VVKILSIYPDVPKPYLLDLHAAQPPPVPGINIPKANLHHRLSAIASSSNFFISSLLPTQR 86
           +VK+ SI  +  KPY  D H AQPPPVPGI  PKANLHH  SAIASSSNFFISS +PT R
Sbjct: 1   MVKLFSINFNKTKPYFFDFHTAQPPPVPGIITPKANLHHCRSAIASSSNFFISSWVPTHR 60

Query: 87  TMVGSTVIIPSFIIGLITLTAFSMLCPLSTTSMTMGRSVDNLKTSLE 133
           T+VGSTVIIPSFIIGLITLT FS+LCPLSTTS  MGRSV++L TSLE
Sbjct: 61  TIVGSTVIIPSFIIGLITLTTFSILCPLSTTSTIMGRSVESLITSLE 107


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.138    0.402 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48902839
Number of Sequences: 2977
Number of extensions: 2008280
Number of successful extensions: 4998
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4997
Number of HSP's gapped (non-prelim): 1
length of query: 133
length of database: 189,106,746
effective HSP length: 52
effective length of query: 81
effective length of database: 157,985,422
effective search space: 12796819182
effective search space used: 12796819182
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)