BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0455 623551 623898 116 !not a gene!
         (116 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B71081 hypothetical protein PH0912 - Pyrococcus horikoshii ...   109  8e-24

>pir||B71081 hypothetical protein PH0912 - Pyrococcus horikoshii
           >gi|3257325|dbj|BAA30008.1| (AP000004) 105aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 105
           
 Score =  109 bits (271), Expect = 8e-24
 Identities = 57/103 (55%), Positives = 70/103 (67%)

Query: 14  VILIAIAIPIPETAIPTRKASRRVGTTPESLRSASVKLRASIMVPWIRAIKAPPMLLPIM 73
           +IL A A P P  A PT+KA   VG TPE+ R A++KL A+I+ PWI A  APP++LP M
Sbjct: 3   LILRATATPKPAIATPTKKARMSVGITPETFRFATIKLNATIINPWIIATIAPPVILPRM 62

Query: 74  ASTLEAGATRSSFRNPNCLSQMSVIPCMKPMLKTVMATIPGTK 116
            STL AGATR SF  PNCLS + V PC K +  TV+ T PGT+
Sbjct: 63  LSTLLAGATRISFMKPNCLSHIIVNPCKKLISNTVITTTPGTR 105


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.132    0.384 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37210903
Number of Sequences: 2977
Number of extensions: 1134820
Number of successful extensions: 5087
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5086
Number of HSP's gapped (non-prelim): 1
length of query: 116
length of database: 189,106,746
effective HSP length: 54
effective length of query: 62
effective length of database: 156,788,448
effective search space: 9720883776
effective search space used: 9720883776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)