BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0456 625703 626233 177 !not a gene!
         (177 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A72741 hypothetical protein APE0458 - Aeropyrum pernix (str...   116  2e-25

>pir||A72741 hypothetical protein APE0458 - Aeropyrum pernix (strain K1)
           >gi|5104105|dbj|BAA79421.1| (AP000059) 160aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 160
           
 Score =  116 bits (288), Expect = 2e-25
 Identities = 76/161 (47%), Positives = 92/161 (56%), Gaps = 1/161 (0%)

Query: 17  IVSGGSILRTFPLKCVTINPSSKALSMTFWVSSMALSLVSLSLTSSTPIINPIPLTSPIS 76
           +VSGG+IL       +T  P  K LS T   +S+  SLV  SLTSSTPII+P+PLT P  
Sbjct: 1   MVSGGAILTAETPAPITRRPLLKDLSSTQARASLWGSLVFSSLTSSTPIISPLPLTWPTI 60

Query: 77  SCSSIIFLSLFMAWFPSFSALLNRFFSSISSITARAALEAVGLPESVKAWLSGGNESMIS 136
             SS    S+F A+ PS   L +    SI+SITA  A  A GLP  V AWL  G   + S
Sbjct: 61  LSSSAASPSIFSAFSPSLCDLSHSLSPSITSITALKAARATGLPPKVLAWLPRG-RLITS 119

Query: 137 LLPIVALIGNPPPRDLPTVIISGLTPKCSIANHFPVLPMPL 177
           LLP  A  G+PPP  L   + SG TP+CS AN  PVL  P+
Sbjct: 120 LLPTAAPSGSPPPMALARAMTSGSTPQCSTANILPVLAKPV 160


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.131    0.381 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64187631
Number of Sequences: 2977
Number of extensions: 2353637
Number of successful extensions: 8180
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8178
Number of HSP's gapped (non-prelim): 1
length of query: 177
length of database: 189,106,746
effective HSP length: 56
effective length of query: 121
effective length of database: 155,591,474
effective search space: 18826568354
effective search space used: 18826568354
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)