BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0458 (PAB0458) DE:Hypothetical protein
         (145 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75108 hypothetical protein PAB0458 - Pyrococcus abyssi (st...   278  2e-74
pir||H71025 hypothetical protein PH1500 - Pyrococcus horikoshii ...   158  3e-38

>pir||H75108 hypothetical protein PAB0458 - Pyrococcus abyssi (strain Orsay)
           >gi|5458096|emb|CAB49585.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 145
           
 Score =  278 bits (704), Expect = 2e-74
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MVEVKRVKLKPMINVDIPQDFSEVIKSKLKGKVLKTGDVVSVDILGKEIRFKVVQAMPSP 60
           MVEVKRVKLKPMINVDIPQDFSEVIKSKLKGKVLKTGDVVSVDILGKEIRFKVVQAMPSP
Sbjct: 1   MVEVKRVKLKPMINVDIPQDFSEVIKSKLKGKVLKTGDVVSVDILGKEIRFKVVQAMPSP 60

Query: 61  LTVDESTGVLLTRHSVETLEINVESVEDVLLGDDIIVVIRDNEVLILNHDLEEIYRERFE 120
           LTVDESTGVLLTRHSVETLEINVESVEDVLLGDDIIVVIRDNEVLILNHDLEEIYRERFE
Sbjct: 61  LTVDESTGVLLTRHSVETLEINVESVEDVLLGDDIIVVIRDNEVLILNHDLEEIYRERFE 120

Query: 121 NLKKVMVKGNVVVVIDGEKLKLIRA 145
           NLKKVMVKGNVVVVIDGEKLKLIRA
Sbjct: 121 NLKKVMVKGNVVVVIDGEKLKLIRA 145


>pir||H71025 hypothetical protein PH1500 - Pyrococcus horikoshii
           >gi|3257925|dbj|BAA30608.1| (AP000006) 148aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 148
           
 Score =  158 bits (395), Expect = 3e-38
 Identities = 75/144 (52%), Positives = 111/144 (77%), Gaps = 1/144 (0%)

Query: 2   VEVKRVKLKPMINVDIPQDFSEVIKSKLKGKVLKTGDVVSVDILGKEIRFKVVQAMPSPL 61
           V +  +KLKP+  V++P DF +VI+ KL+GK ++TGDV+ + ILGKE++FKVVQA PSPL
Sbjct: 4   VIMSELKLKPLPKVELPPDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPSPL 63

Query: 62  TVDESTGVLLTRHSVETLEINVESVEDVLLGDDIIVVI-RDNEVLILNHDLEEIYRERFE 120
            V++ T + L  H V+ LE  ++ ++DV+L +++IVVI  +NEVLI N +LEE+YR +FE
Sbjct: 64  RVEDRTKITLVTHPVDVLEAKIKGIKDVILDENLIVVITEENEVLIFNQNLEELYRGKFE 123

Query: 121 NLKKVMVKGNVVVVIDGEKLKLIR 144
           NL KV+V+ ++VV+ID +KL LIR
Sbjct: 124 NLNKVLVRNDLVVIIDEQKLTLIR 147


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.140    0.366 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47248226
Number of Sequences: 2977
Number of extensions: 1801941
Number of successful extensions: 6118
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6114
Number of HSP's gapped (non-prelim): 2
length of query: 145
length of database: 189,106,746
effective HSP length: 58
effective length of query: 87
effective length of database: 154,394,500
effective search space: 13432321500
effective search space used: 13432321500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)