BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0460 (rpl7AE) DE:LSU ribosomal protein L7AE (rpl7AE)
(128 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75109 lsu ribosomal protein l7ae (rpl7ae) PAB0460 - Pyroco... 252 1e-66
sp|O59165|RS6X_PYRHO 30S RIBOSOMAL PROTEIN HS6-LIKE >gi|7440708|... 241 2e-63
sp|Q9YAX7|RS6X_AERPE 30S RIBOSOMAL PROTEIN HS6-LIKE >gi|7440714|... 184 3e-46
sp|P55858|RS6X_SULSO 30S RIBOSOMAL PROTEIN HS6-LIKE >gi|7440709|... 178 2e-44
gb|AAK40449.1| LSU ribosomal protein L7AE (rpl7AE) [Sulfolobus s... 178 2e-44
sp|O26355|RS6X_METTH 30S RIBOSOMAL PROTEIN HS6-LIKE >gi|7440710|... 174 4e-43
gi|11498370 LSU ribosomal protein L7AE (rpl7AE) [Archaeoglobus f... 146 8e-35
pdb|1FFK|E Chain E, Crystal Structure Of The Large Ribosomal Sub... 143 9e-34
gb|AAG19537.1| (AE005044) 30S ribosomal protein S14P; Rphs6 [Hal... 139 1e-32
pir||B64450 ribosomal protein HS6-type - Methanococcus jannaschii 134 3e-31
sp|P54066|RS6X_METJA 30S RIBOSOMAL PROTEIN HS6-LIKE >gi|2826375|... 134 3e-31
sp|P12743|RS6X_HALMA 30S RIBOSOMAL PROTEIN HS6 >gi|71119|pir||R5... 133 8e-31
emb|CAC12243.1| (AL445066) probable 50S ribosomal protein L7 [Th... 130 5e-30
dbj|BAB17305.1| (AB036344) LSU ribosomal protein L7AE [Halobacte... 101 3e-21
emb|CAC18545.1| (AJ292371) putative high mobility group-like nuc... 93 1e-18
gi|4826860 non-histone chromosome protein 2 (S. cerevisiae)-like... 88 4e-17
gi|11418193 non-histone chromosome protein 2 (S. cerevisiae)-lik... 88 4e-17
gb|AAG23161.1|AF263280_2 (AF263280) NHP2/RS6-like protein [Trypa... 87 7e-17
gb|AAF20209.1|AF208396_1 (AF208396) Hoi-polloi [Drosophila melan... 87 9e-17
gi|6319993 HMG-like nuclear protein; Nhp2p [Saccharomyces cerevi... 86 2e-16
sp|Q21568|NHPX_CAEEL NHP2/RS6 FAMILY PROTEIN YEL026W HOMOLOG >gi... 86 2e-16
pir||T50223 rs6/l7a ribosomal protein homolog [imported] - fissi... 86 2e-16
pir||T50100 Nucleolar protein, possibly involved in ribosomal RN... 86 2e-16
gi|6320809 U4/U6.U5 snRNP component; Snu13p [Saccharomyces cerev... 84 6e-16
pir||T43644 nhp2 homolog - fission yeast (Schizosaccharomyces po... 84 6e-16
emb|CAB53753.1| (AL049730) Ribosomal protein L7Ae-like [Arabidop... 78 3e-14
pir||T26980 hypothetical protein Y48A6B.3 - Caenorhabditis elega... 77 6e-14
emb|CAB52812.1| (AL033545) Ribosomal protein L7Ae-like (fragment... 76 1e-13
pir||T50503 nhp2-like protein - Arabidopsis thaliana >gi|8346555... 76 2e-13
emb|CAC18221.1| (AL451017) probable 13 kD U4/U6.U5 snRNP associa... 75 2e-13
gi|8923444 hypothetical protein FLJ20479 [Homo sapiens] >gi|7020... 75 3e-13
gb|AAF27630.1|AF217228_1 (AF217228) nucleolar protein NHP2 [Dros... 74 5e-13
sp|P55770|NHPX_RAT NHP2/RS6 FAMILY PROTEIN YEL026W HOMOLOG (HIGH... 73 1e-12
gb|AAF28964.1|AF161404_1 (AF161404) HSPC286 [Homo sapiens] 71 3e-12
gi|11431872 hypothetical protein FLJ20479 [Homo sapiens] >gi|971... 71 3e-12
pir||S11615 ribosomal protein HS6 [validated] - Halobacterium sa... 70 8e-12
>pir||C75109 lsu ribosomal protein l7ae (rpl7ae) PAB0460 - Pyrococcus abyssi
(strain Orsay) >gi|5458099|emb|CAB49588.1| (AJ248285)
LSU ribosomal protein L7AE (rpl7AE) [Pyrococcus abyssi]
Length = 128
Score = 252 bits (636), Expect = 1e-66
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MEGWMMAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAE 60
MEGWMMAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAE
Sbjct: 1 MEGWMMAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAE 60
Query: 61 DVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIA 120
DVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIA
Sbjct: 61 DVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIA 120
Query: 121 MKVRELMK 128
MKVRELMK
Sbjct: 121 MKVRELMK 128
>sp|O59165|RS6X_PYRHO 30S RIBOSOMAL PROTEIN HS6-LIKE >gi|7440708|pir||D71025 probable
ribosomal protein L7 - Pyrococcus horikoshii
>gi|3257921|dbj|BAA30604.1| (AP000006) 124aa long
hypothetical 50S ribosomal protein L7 [Pyrococcus
horikoshii]
Length = 124
Score = 241 bits (609), Expect = 2e-63
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 5 MMAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDP 64
MMAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDP
Sbjct: 1 MMAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDP 60
Query: 65 EEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVR 124
EEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVR
Sbjct: 61 EEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVR 120
Query: 125 ELMK 128
ELMK
Sbjct: 121 ELMK 124
>sp|Q9YAX7|RS6X_AERPE 30S RIBOSOMAL PROTEIN HS6-LIKE >gi|7440714|pir||H72566 probable
ribosomal protein HS6 APE1818 - Aeropyrum pernix
(strain K1) >gi|5105508|dbj|BAA80821.1| (AP000062) 127aa
long hypothetical 30S ribosomal protein HS6 [Aeropyrum
pernix]
Length = 127
Score = 184 bits (462), Expect = 3e-46
Identities = 92/121 (76%), Positives = 106/121 (87%)
Query: 6 MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPE 65
M+KP YV+FEVP++LAEKA +AV+ AR+TG+I+KGTNETTKAVERG AKLV+IAEDVDP
Sbjct: 1 MSKPIYVRFEVPEDLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPP 60
Query: 66 EIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVRE 125
EIV HLP LC+EK+IPY+YVPSKK LG AAGIEVAAASVAIIEPG A LV EI KV+E
Sbjct: 61 EIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAIIEPGDAETLVREIVEKVKE 120
Query: 126 L 126
L
Sbjct: 121 L 121
>sp|P55858|RS6X_SULSO 30S RIBOSOMAL PROTEIN HS6-LIKE >gi|7440709|pir||S75397 ribosomal
protein HS6 - Sulfolobus solfataricus
>gi|1707803|emb|CAA69560.1| (Y08257) ribosomal protein
HS6 homolog [Sulfolobus solfataricus]
Length = 130
Score = 178 bits (447), Expect = 2e-44
Identities = 86/121 (71%), Positives = 106/121 (87%)
Query: 6 MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPE 65
M+K SYVKFEVP++LA+K L+AV A+++GKI+KGTNETTKAVERGQAKLVIIAEDV PE
Sbjct: 4 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPE 63
Query: 66 EIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVRE 125
EIVAHLP LC+EK+IPY+YV SKK LG A G++VA AS AI+EPG+A+DLV+EI +V E
Sbjct: 64 EIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVNE 123
Query: 126 L 126
+
Sbjct: 124 I 124
>gb|AAK40449.1| LSU ribosomal protein L7AE (rpl7AE) [Sulfolobus solfataricus]
Length = 130
Score = 178 bits (447), Expect = 2e-44
Identities = 86/121 (71%), Positives = 106/121 (87%)
Query: 6 MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPE 65
M+K SYVKFEVP++LA+K L+AV A+++GKI+KGTNETTKAVERGQAKLVIIAEDV PE
Sbjct: 4 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPE 63
Query: 66 EIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVRE 125
EIVAHLP LC+EK+IPY+YV SKK LG A G++VA AS AI+EPG+A+DLV+EI +V E
Sbjct: 64 EIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAILEPGEAKDLVDEIIKRVNE 123
Query: 126 L 126
+
Sbjct: 124 I 124
>sp|O26355|RS6X_METTH 30S RIBOSOMAL PROTEIN HS6-LIKE >gi|7440710|pir||A69132 ribosomal
protein L7a - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621305|gb|AAB84761.1| (AE000812)
ribosomal protein L7a [Methanobacterium
thermoautotrophicum]
Length = 130
Score = 174 bits (436), Expect = 4e-43
Identities = 87/123 (70%), Positives = 102/123 (82%)
Query: 6 MAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPE 65
MAK YVKF+VPKELA+KA +A+EIAR+TGK+ KGTNE TKAVERG A+LV+IAEDV+P
Sbjct: 8 MAKAIYVKFDVPKELADKAAEALEIARETGKVSKGTNEVTKAVERGVAQLVLIAEDVEPA 67
Query: 66 EIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVRE 125
EIVAHLP L EEKEIPYIY+P+K ELGAAAG+ V AS AI+E G A DL++EI KV E
Sbjct: 68 EIVAHLPLLAEEKEIPYIYIPTKDELGAAAGLNVGTASSAIVEAGDAEDLIKEIIEKVEE 127
Query: 126 LMK 128
L K
Sbjct: 128 LKK 130
>gi|11498370 LSU ribosomal protein L7AE (rpl7AE) [Archaeoglobus fulgidus]
>gi|3914933|sp|O29494|RS6X_ARCFU 30S RIBOSOMAL PROTEIN
HS6-LIKE >gi|7440711|pir||D69345 LSU ribosomal protein
L7AE (rpl7AE) homolog - Archaeoglobus fulgidus
>gi|2649836|gb|AAB90466.1| (AE001051) LSU ribosomal
protein L7AE (rpl7AE) [Archaeoglobus fulgidus]
Length = 119
Score = 146 bits (365), Expect = 8e-35
Identities = 72/118 (61%), Positives = 89/118 (75%)
Query: 11 YVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAH 70
YV+FEVP+++ +AL +E R++GK++KGTNETTKAVERG AKLV IAEDVDP EIVAH
Sbjct: 2 YVRFEVPEDMQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAH 61
Query: 71 LPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVRELMK 128
LP LCEEK +PYIYV SK +LG A GIEV AS AII G+ R + + K++ L K
Sbjct: 62 LPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAIINEGELRKELGSLVEKIKGLQK 119
>pdb|1FFK|E Chain E, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 119
Score = 143 bits (356), Expect = 9e-34
Identities = 66/118 (55%), Positives = 92/118 (77%)
Query: 9 PSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIV 68
P YV F+VP +L + AL+A+E+ARDTG ++KGTNETTK++ERG A+LV +AEDV PEEIV
Sbjct: 1 PVYVDFDVPADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIV 60
Query: 69 AHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVREL 126
H+P L +EK +P+I+V + +LG AAG+EV +A+ A+ + G A ++EEIA KV EL
Sbjct: 61 MHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVTDAGAAATVLEEIADKVEEL 118
>gb|AAG19537.1| (AE005044) 30S ribosomal protein S14P; Rphs6 [Halobacterium sp.
NRC-1]
Length = 120
Score = 139 bits (347), Expect = 1e-32
Identities = 64/118 (54%), Positives = 90/118 (76%)
Query: 9 PSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIV 68
P YV ++VP +L E+AL+++E+ARDTG ++KGTNETTKA+ERG A +V +AEDV PEEIV
Sbjct: 2 PVYVDYDVPADLQERALESLEVARDTGSVKKGTNETTKAIERGNADIVFVAEDVSPEEIV 61
Query: 69 AHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVREL 126
HLP L EK I ++V ++ ELG AAG+EV +A+ A++ G A D +E+I+ KV +L
Sbjct: 62 MHLPELAAEKGIEVVFVETQDELGNAAGLEVGSAAAAVVAAGDAEDEIEDISTKVEDL 119
>pir||B64450 ribosomal protein HS6-type - Methanococcus jannaschii
Length = 120
Score = 134 bits (334), Expect = 3e-31
Identities = 71/105 (67%), Positives = 84/105 (79%), Gaps = 3/105 (2%)
Query: 11 YVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAH 70
YVKF+VP+E+ ++ L AV A+ KI+KG NE TKAVERG AKLVIIAEDV PEE+VAH
Sbjct: 7 YVKFKVPEEIQKELLDAVAKAQ---KIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAH 63
Query: 71 LPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDL 115
LP LCEEK IPY YV SK++LG AAG+EVAA+SVAII G A +L
Sbjct: 64 LPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGDAEEL 108
>sp|P54066|RS6X_METJA 30S RIBOSOMAL PROTEIN HS6-LIKE >gi|2826375|gb|AAB99207.1| (U67562)
LSU ribosomal protein L7AE [Methanococcus jannaschii]
Length = 117
Score = 134 bits (334), Expect = 3e-31
Identities = 71/105 (67%), Positives = 84/105 (79%), Gaps = 3/105 (2%)
Query: 11 YVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAH 70
YVKF+VP+E+ ++ L AV A+ KI+KG NE TKAVERG AKLVIIAEDV PEE+VAH
Sbjct: 4 YVKFKVPEEIQKELLDAVAKAQ---KIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAH 60
Query: 71 LPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDL 115
LP LCEEK IPY YV SK++LG AAG+EVAA+SVAII G A +L
Sbjct: 61 LPYLCEEKGIPYAYVASKQDLGKAAGLEVAASSVAIINEGDAEEL 105
>sp|P12743|RS6X_HALMA 30S RIBOSOMAL PROTEIN HS6 >gi|71119|pir||R5HSS6 ribosomal protein
HS6 [validated] - Haloarcula marismortui
Length = 116
Score = 133 bits (331), Expect = 8e-31
Identities = 64/118 (54%), Positives = 89/118 (75%), Gaps = 3/118 (2%)
Query: 9 PSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIV 68
P YV F+VP +L + AL+A+E+ARDTG ++KGTNETTK++ERG A+LV +AEDV PEEIV
Sbjct: 1 PVYVDFDVPADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIV 60
Query: 69 AHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVREL 126
H+P L +EK +P+I+V + +LG AAG+EV +A+ A+ + G A + IA KV EL
Sbjct: 61 MHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVTDAGAAATV---IADKVEEL 115
>emb|CAC12243.1| (AL445066) probable 50S ribosomal protein L7 [Thermoplasma
acidophilum]
Length = 121
Score = 130 bits (324), Expect = 5e-30
Identities = 60/119 (50%), Positives = 91/119 (76%), Gaps = 1/119 (0%)
Query: 10 SYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVA 69
SYVKFE P+++++KAL VE + TGK++KGTNE K++ERG++KLV+IAEDV+P E+V
Sbjct: 4 SYVKFETPEDVSQKALDLVESSYRTGKVKKGTNEVIKSIERGESKLVVIAEDVNPPEVVY 63
Query: 70 HLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVRELMK 128
+LP LCE+K++PY+YV K +LG+ GI +AASV+I++ GK +L + I + ++ K
Sbjct: 64 YLPSLCEDKKVPYVYVKKKADLGSKVGI-ASAASVSIVDYGKNEELYKSIVSALEQIKK 121
>dbj|BAB17305.1| (AB036344) LSU ribosomal protein L7AE [Halobacterium cutirubrum]
Length = 88
Score = 101 bits (249), Expect = 3e-21
Identities = 48/87 (55%), Positives = 64/87 (73%)
Query: 40 GTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEV 99
GTNETTKA+ERG A +V +AEDV PEEIV HLP L EK I ++V ++ ELG AAG+EV
Sbjct: 1 GTNETTKAIERGNADIVFVAEDVSPEEIVMHLPELAAEKGIEVVFVETQDELGNAAGLEV 60
Query: 100 AAASVAIIEPGKARDLVEEIAMKVREL 126
+A+ A++ G A D +E+I+ KV +L
Sbjct: 61 GSAAAAVVAAGDAEDEIEDISTKVEDL 87
>emb|CAC18545.1| (AJ292371) putative high mobility group-like nuclear protein 2
[Echinococcus multilocularis]
Length = 127
Score = 92.8 bits (227), Expect = 1e-18
Identities = 45/111 (40%), Positives = 72/111 (64%), Gaps = 2/111 (1%)
Query: 19 ELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEK 78
EL K ++ ++ A +++KG NE TKA+ RG+A+ V++A D +P EIV H+P +CE+K
Sbjct: 16 ELTGKIIELLKQAASYKQLKKGANEATKALNRGKAEFVVMAADTNPIEIVLHIPLVCEDK 75
Query: 79 EIPYIYVPSKKELGAAAGIE--VAAASVAIIEPGKARDLVEEIAMKVRELM 127
+PYI++PS++ LG A G+ V AA V E + + LV I M + +L+
Sbjct: 76 NVPYIFIPSQQALGRACGVSRPVIAAVVTDSEGSQLKPLVSNIQMSIEKLL 126
>gi|4826860 non-histone chromosome protein 2 (S. cerevisiae)-like 1; 15.5 kD
RNA binding protein [Homo sapiens]
>gi|2500345|sp|P55769|NHPX_HUMAN NHP2/RS6 FAMILY PROTEIN
YEL026W HOMOLOG (HIGH MOBILITY GROUP-LIKE NUCLEAR
PROTEIN 2 HOMOLOG) (OTK27) >gi|2618578|dbj|BAA23363.1|
(D50420) OTK27 [Homo sapiens] >gi|3859990|gb|AAC72945.1|
(AF091076) OTK27 [Homo sapiens]
>gi|5327043|emb|CAB46207.1| (Z83840) bK216E10.2
(non-histone chromosome protein 2 (S. cerevisiae)-like
1) [Homo sapiens] >gi|6318599|gb|AAF06959.1|AF155235_1
(AF155235) 15.5 kD RNA binding protein [Homo sapiens]
>gi|1589072|prf||2210268A nuclear protein-NHP2-like
protein [Homo sapiens]
Length = 128
Score = 87.8 bits (214), Expect = 4e-17
Identities = 42/110 (38%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 20 LAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKE 79
L +K L V+ + + ++RKG NE TK + RG ++ +++A D +P EI+ HLP LCE+K
Sbjct: 18 LTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKN 77
Query: 80 IPYIYVPSKKELGAAAGIE--VAAASVAIIEPGKARDLVEEIAMKVRELM 127
+PY++V SK+ LG A G+ V A SV I E + + ++ I + L+
Sbjct: 78 VPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLL 127
>gi|11418193 non-histone chromosome protein 2 (S. cerevisiae)-like 1 [Homo
sapiens]
Length = 159
Score = 87.8 bits (214), Expect = 4e-17
Identities = 42/110 (38%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 20 LAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKE 79
L +K L V+ + + ++RKG NE TK + RG ++ +++A D +P EI+ HLP LCE+K
Sbjct: 49 LTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKN 108
Query: 80 IPYIYVPSKKELGAAAGIE--VAAASVAIIEPGKARDLVEEIAMKVRELM 127
+PY++V SK+ LG A G+ V A SV I E + + ++ I + L+
Sbjct: 109 VPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLL 158
>gb|AAG23161.1|AF263280_2 (AF263280) NHP2/RS6-like protein [Trypanosoma brucei]
Length = 126
Score = 87.0 bits (212), Expect = 7e-17
Identities = 41/89 (46%), Positives = 60/89 (67%)
Query: 20 LAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKE 79
L + L V+ A + I+KG NE TKA+ RG A L+++A D +P EI+ HLP LCE+K
Sbjct: 17 LTQTILDIVQEASNAKMIKKGANEATKALNRGIADLIVLAGDTNPIEILLHLPLLCEDKN 76
Query: 80 IPYIYVPSKKELGAAAGIEVAAASVAIIE 108
+PY++VPSK LG AA + A ++AI++
Sbjct: 77 VPYVFVPSKTALGRAAQVSRNAVALAILQ 105
>gb|AAF20209.1|AF208396_1 (AF208396) Hoi-polloi [Drosophila melanogaster]
>gi|10728689|gb|AAF52798.2| (AE003625) hoip gene product
[Drosophila melanogaster]
Length = 127
Score = 86.6 bits (211), Expect = 9e-17
Identities = 41/111 (36%), Positives = 67/111 (59%), Gaps = 2/111 (1%)
Query: 19 ELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEK 78
+L K + ++ A + ++RKG NE TK + RG A +V++A D +P EI+ HLP LCE+K
Sbjct: 16 QLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDK 75
Query: 79 EIPYIYVPSKKELGAAAGIE--VAAASVAIIEPGKARDLVEEIAMKVRELM 127
+PY++V SK+ LG A G+ + A SV E + + + I ++ L+
Sbjct: 76 NVPYVFVRSKQALGRACGVSRPIVACSVTTNEGSQLKSQITSIQQEIERLL 126
>gi|6319993 HMG-like nuclear protein; Nhp2p [Saccharomyces cerevisiae]
>gi|417360|sp|P32495|NHP2_YEAST HIGH MOBILITY GROUP-LIKE
NUCLEAR PROTEIN 2 >gi|2131280|pir||S67767 high mobility
group-like protein NHP2 - yeast (Saccharomyces
cerevisiae) >gi|666101|emb|CAA40885.1| (X57714) high
mobility group-like nuclear protein 2 [Saccharomyces
cerevisiae] >gi|1429348|emb|CAA67483.1| (X99000)
high-mobility-group-like protein [Saccharomyces
cerevisiae] >gi|1431346|emb|CAA98786.1| (Z74256) ORF
YDL208w [Saccharomyces cerevisiae]
Length = 173
Score = 85.8 bits (209), Expect = 2e-16
Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 9 PSYVKFEVP---KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPE 65
P+ + F P K+L +K L+ V+ A +++G E KA+ +G+ LV+IA D+ P
Sbjct: 42 PAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDISPA 101
Query: 66 EIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPG 110
++++H+P LCE+ +PYI++PSK++LG AAG SV I PG
Sbjct: 102 DVISHIPVLCEDHSVPYIFIPSKQDLG-AAGATKRPTSVVFIVPG 145
>sp|Q21568|NHPX_CAEEL NHP2/RS6 FAMILY PROTEIN YEL026W HOMOLOG >gi|7506095|pir||T23808
hypothetical protein M28.5 - Caenorhabditis elegans
>gi|3878691|emb|CAA90127.1| (Z49911) contains similarity
to Pfam domain: PF01248 (Ribosomal protein L7Ae),
Score=195.9, E-value=2e-55, N=1~cDNA EST yk67b10.5 comes
from this gene; cDNA EST yk67b10.3 comes from this
gene~cDNA EST yk74f2.5 comes from this gene; cDNA EST
yk74f2.3 co>
Length = 128
Score = 85.8 bits (209), Expect = 2e-16
Identities = 41/110 (37%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Query: 20 LAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKE 79
L++K + V+ A + +++KG NE TK + RG ++++++A D +P EI+ HLP LCE+K
Sbjct: 18 LSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKN 77
Query: 80 IPYIYVPSKKELGAAAGI--EVAAASVAIIEPGKARDLVEEIAMKVRELM 127
+PY++V SK LG A G+ V AAS+ E + + +++I V +L+
Sbjct: 78 VPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKLL 127
>pir||T50223 rs6/l7a ribosomal protein homolog [imported] - fission yeast
(Schizosaccharomyces pombe) >gi|3676762|gb|AAC62085.1|
(AF087136) SNU13 snRNP subunit homolog
[Schizosaccharomyces pombe] >gi|6624599|emb|CAB63790.1|
(AL135751) putative splicing factor; rs6/l7a ribosomal
protein homolog [Schizosaccharomyces pombe]
Length = 125
Score = 85.8 bits (209), Expect = 2e-16
Identities = 41/110 (37%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Query: 20 LAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKE 79
L ++ L V+ A ++RKG NE TK + RG ++ +++A D +P EI+ HLP LCE+K
Sbjct: 15 LTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKN 74
Query: 80 IPYIYVPSKKELGAAAGIE--VAAASVAIIEPGKARDLVEEIAMKVRELM 127
+PY++VPSK LG A G+ V +AS+ E ++ I + + +L+
Sbjct: 75 VPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKLL 124
>pir||T50100 Nucleolar protein, possibly involved in ribosomal RNA
pseudouridinylation, in association with snRNAs
[imported] - fission yeast (Schizosaccharomyces pombe)
>gi|7160234|emb|CAB76272.1| (AL158056) Nucleolar
protein, possibly involved in ribosomal RNA
pseudouridinylation, in association with snRNAs
[Schizosaccharomyces pombe]
Length = 154
Score = 85.8 bits (209), Expect = 2e-16
Identities = 42/114 (36%), Positives = 69/114 (59%), Gaps = 2/114 (1%)
Query: 17 PKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCE 76
PK+L +K ++ V+ A I +G E KAV +G+ LVI+A D+ P ++++H+P LCE
Sbjct: 34 PKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCE 93
Query: 77 EKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDL--VEEIAMKVRELMK 128
+ +PY+Y SK+ LG A+ + + V I+ GK +D+ VEE E++K
Sbjct: 94 DNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEEYKESYEEIIK 147
>gi|6320809 U4/U6.U5 snRNP component; Snu13p [Saccharomyces cerevisiae]
>gi|731411|sp|P39990|NHPX_YEAST NHP2/RS6 FAMILY PROTEIN
YEL026W >gi|1077605|pir||S50433 hypothetical protein
YEL026w - yeast (Saccharomyces cerevisiae)
>gi|602393|gb|AAB64503.1| (U18530) Yel026wp
[Saccharomyces cerevisiae]
Length = 126
Score = 83.9 bits (204), Expect = 6e-16
Identities = 40/110 (36%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Query: 20 LAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKE 79
L ++ L V+ A + +++KG NE TK + RG ++ +I+A D +P EI+ HLP LCE+K
Sbjct: 16 LTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKN 75
Query: 80 IPYIYVPSKKELGAAAGIE--VAAASVAIIEPGKARDLVEEIAMKVRELM 127
+PY++VPS+ LG A G+ V AAS+ + + + + K+ L+
Sbjct: 76 VPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQIYAVKDKIETLL 125
>pir||T43644 nhp2 homolog - fission yeast (Schizosaccharomyces pombe)
>gi|3955041|emb|CAA08990.1| (AJ010068) nhp2+ protein
[Schizosaccharomyces pombe]
Length = 154
Score = 83.9 bits (204), Expect = 6e-16
Identities = 41/114 (35%), Positives = 68/114 (58%), Gaps = 2/114 (1%)
Query: 17 PKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCE 76
PK+L +K ++ V+ A I +G E KAV +G+ LVI+ D+ P ++++H+P LCE
Sbjct: 34 PKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILPGDISPMDVISHIPVLCE 93
Query: 77 EKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDL--VEEIAMKVRELMK 128
+ +PY+Y SK+ LG A+ + + V I+ GK +D+ VEE E++K
Sbjct: 94 DNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEEYKESYEEIIK 147
>emb|CAB53753.1| (AL049730) Ribosomal protein L7Ae-like [Arabidopsis thaliana]
>gi|7267962|emb|CAB78303.1| (AL161534) Ribosomal protein
L7Ae-like [Arabidopsis thaliana]
Length = 128
Score = 78.0 bits (189), Expect = 3e-14
Identities = 38/111 (34%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Query: 19 ELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEK 78
+L+ L V+ A + +++KG NE TK + RG ++ +++A D +P EI+ HLP L E+K
Sbjct: 17 QLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDK 76
Query: 79 EIPYIYVPSKKELGAAAGI--EVAAASVAIIEPGKARDLVEEIAMKVRELM 127
+PY++VPSK+ LG A + V A SV E + + ++ + + +L+
Sbjct: 77 NVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKDAIEKLL 127
>pir||T26980 hypothetical protein Y48A6B.3 - Caenorhabditis elegans
>gi|3881056|emb|CAA19527.1| (AL023844) contains
similarity to Pfam domain: PF01248 (Ribosomal protein
L7Ae), Score=74.3, E-value=8.3e-19, N=1~cDNA EST
yk74b7.3 comes from this gene~cDNA EST yk74b7.5 comes
from this gene~cDNA EST yk98d7.5 comes from this
gene~cDNA EST yk103d7.5 co>
Length = 163
Score = 77.3 bits (187), Expect = 6e-14
Identities = 36/110 (32%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 18 KELAEKALQAVEIARDTGK-IRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCE 76
++LA+K + ++ A K +R+G + K + R + + I+A +V P ++ +H+P +CE
Sbjct: 49 RKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICE 108
Query: 77 EKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVREL 126
EKEIPY+Y+PS+++LG A G + + + G ++L +E+A +R L
Sbjct: 109 EKEIPYVYIPSREQLGLAVGHRRPSILIFVKPSGDFKELYDEVAEALRHL 158
>emb|CAB52812.1| (AL033545) Ribosomal protein L7Ae-like (fragment) [Arabidopsis
thaliana] >gi|7269084|emb|CAB79193.1| (AL161557)
Ribosomal protein L7Ae-like (fragment) [Arabidopsis
thaliana]
Length = 108
Score = 76.1 bits (184), Expect = 1e-13
Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 19 ELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEK 78
+L+ + V+ A + +++KG NE TK + RG ++ V++A D +P EI+ HLP L E+K
Sbjct: 17 QLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDK 76
Query: 79 EIPYIYVPSKKELGAAAGI--EVAAASV 104
+PY++VPSK+ LG A G+ V A SV
Sbjct: 77 NVPYVFVPSKQALGRACGVTRPVIACSV 104
>pir||T50503 nhp2-like protein - Arabidopsis thaliana
>gi|8346555|emb|CAB93719.1| (AL357612) nhp2-like protein
[Arabidopsis thaliana]
Length = 156
Score = 75.7 bits (183), Expect = 2e-13
Identities = 35/104 (33%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 18 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEE 77
K+L ++ + ++ A +++G E K++ RGQ L +IA ++ P +++ HLP LCEE
Sbjct: 32 KKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEE 91
Query: 78 KEIPYIYVPSKKELGAAAGIEVAAASVAI-IEPGKARDLVEEIA 120
+PY+YVPSK++L A + V + ++P K EE+A
Sbjct: 92 AGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELA 135
>emb|CAC18221.1| (AL451017) probable 13 kD U4/U6.U5 snRNP associate protein Snu13
[Neurospora crassa]
Length = 125
Score = 75.3 bits (182), Expect = 2e-13
Identities = 42/111 (37%), Positives = 63/111 (55%), Gaps = 12/111 (10%)
Query: 20 LAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKE 79
L ++ L V+ A +++KG NE TK+V RG ++LVI+A D P IV H+P +K
Sbjct: 18 LVQELLDCVQQASHYRQLKKGANEATKSVSRGTSELVILAADTQPLSIVLHIP---LDKN 74
Query: 80 IPYIYVPSKKELGAAAGIEVAAASVAIIEPGKA---------RDLVEEIAM 121
+PY+YVPSK LG A G+ + +V++ + RD VE +AM
Sbjct: 75 VPYVYVPSKTALGRACGVSRSVIAVSLTSNEASDLNSKIRALRDKVERLAM 125
>gi|8923444 hypothetical protein FLJ20479 [Homo sapiens]
>gi|7020608|dbj|BAA91198.1| (AK000486) unnamed protein
product [Homo sapiens] >gi|10178885|emb|CAC08452.1|
(AJ293309) NHP2 protein [Homo sapiens]
Length = 153
Score = 74.9 bits (181), Expect = 3e-13
Identities = 34/109 (31%), Positives = 63/109 (57%)
Query: 18 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEE 77
+ L K + ++ A +IR+G E K V +G+ ++++A D P E+ HLP +CE+
Sbjct: 41 RRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCED 100
Query: 78 KEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVREL 126
+ +PY+Y+PSK +LGAAAG + + + + ++ +E +V+ L
Sbjct: 101 RNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHEEYQEAYDECLEEVQSL 149
>gb|AAF27630.1|AF217228_1 (AF217228) nucleolar protein NHP2 [Drosophila melanogaster]
>gi|7294353|gb|AAF49701.1| (AE003533) NHP2 gene product
[Drosophila melanogaster]
Length = 160
Score = 74.1 bits (179), Expect = 5e-13
Identities = 37/110 (33%), Positives = 65/110 (58%), Gaps = 1/110 (0%)
Query: 18 KELAEKALQAVEIA-RDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCE 76
K+LA+K + V+ A + +R G + + +G+ + I A DV P +I+ HLP +CE
Sbjct: 47 KKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCE 106
Query: 77 EKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVREL 126
EK IPY Y PS+ +LGAA G++ ++ + + + +DL +E+ ++ L
Sbjct: 107 EKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNEEYKDLYDEVKEELSAL 156
>sp|P55770|NHPX_RAT NHP2/RS6 FAMILY PROTEIN YEL026W HOMOLOG (HIGH MOBILITY GROUP-LIKE
NUCLEAR PROTEIN 2 HOMOLOG)
Length = 95
Score = 73.0 bits (176), Expect = 1e-12
Identities = 32/78 (41%), Positives = 50/78 (64%)
Query: 20 LAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKE 79
L +K L V+ + + ++RKG NE TK + RG + +++A D +P EI+ P LCE+K
Sbjct: 18 LTKKLLDLVQQSCNYKQLRKGANEATKTLNRGIXEFIVMAADAEPLEIILQXPLLCEDKN 77
Query: 80 IPYIYVPSKKELGAAAGI 97
+PY++ SKK LG A G+
Sbjct: 78 VPYVFXRSKKALGRAXGV 95
>gb|AAF28964.1|AF161404_1 (AF161404) HSPC286 [Homo sapiens]
Length = 142
Score = 71.4 bits (172), Expect = 3e-12
Identities = 30/78 (38%), Positives = 50/78 (63%)
Query: 18 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEE 77
+ L K + ++ A +IR+G E K V +G+ ++++A D P E+ HLP +CE+
Sbjct: 58 RRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCED 117
Query: 78 KEIPYIYVPSKKELGAAA 95
+ +PY+Y+PSK +LGAAA
Sbjct: 118 RNLPYVYIPSKTDLGAAA 135
>gi|11431872 hypothetical protein FLJ20479 [Homo sapiens]
>gi|9714661|emb|CAC01513.1| (AL158040) bA360G10.3 (novel
protein) [Homo sapiens]
Length = 153
Score = 71.4 bits (172), Expect = 3e-12
Identities = 33/109 (30%), Positives = 61/109 (55%)
Query: 18 KELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEE 77
+ L K + ++ A +IR+G E K V +G+ ++++A D P E+ HLP CE+
Sbjct: 41 RRLKRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVRCED 100
Query: 78 KEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVREL 126
+ +PY+Y+PSK +LGAA G + + + + ++ +E +V+ L
Sbjct: 101 RNLPYVYIPSKTDLGAATGSKRPTCVIMVKPHEEYQEAYDECLEEVQSL 149
>pir||S11615 ribosomal protein HS6 [validated] - Halobacterium salinarum
(fragment)
Length = 50
Score = 70.2 bits (169), Expect = 8e-12
Identities = 28/50 (56%), Positives = 42/50 (84%)
Query: 9 PSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVII 58
P YV ++VP +L E+AL+++E+ARDTG ++KGTNZTTKA+ERG A +V +
Sbjct: 1 PVYVDYDVPADLQERALESLEVARDTGSVKKGTNZTTKAIERGNADIVFV 50
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.313 0.132 0.357
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42928788
Number of Sequences: 2977
Number of extensions: 1575080
Number of successful extensions: 3880
Number of sequences better than 1.0e-10: 36
Number of HSP's better than 0.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3842
Number of HSP's gapped (non-prelim): 36
length of query: 128
length of database: 189,106,746
effective HSP length: 59
effective length of query: 69
effective length of database: 153,796,013
effective search space: 10611924897
effective search space used: 10611924897
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 160 (66.7 bits)