BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0461 (PAB0461) DE:Hypothetical protein
(278 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75109 hypothetical protein PAB0461 - Pyrococcus abyssi (st... 545 e-154
pir||D71024 hypothetical protein PH1489 - Pyrococcus horikoshii ... 364 e-100
pir||B82366 conserved hypothetical protein VC0081 [imported] - V... 211 9e-54
gi|11497882 conserved hypothetical protein [Archaeoglobus fulgid... 92 5e-18
sp|O31448|YBFH_BACSU HYPOTHETICAL 33.8 KD PROTEIN IN GLPT-PURT I... 82 8e-15
gi|11498121 conserved hypothetical protein [Archaeoglobus fulgid... 79 5e-14
pir||B75509 conserved hypothetical protein - Deinococcus radiodu... 77 2e-13
pir||A83109 hypothetical protein PA4287 [imported] - Pseudomonas... 75 1e-12
pir||D82411 conserved hypothetical protein VCA0835 [imported] - ... 73 4e-12
pir||G72760 hypothetical protein APE0076 - Aeropyrum pernix (str... 71 1e-11
pir||B75194 hypothetical protein PAB0040 - Pyrococcus abyssi (st... 71 1e-11
pir||B83323 hypothetical protein PA2576 [imported] - Pseudomonas... 70 3e-11
sp|P37511|YYAM_BACSU HYPOTHETICAL 32.9 KD PROTEIN IN TETB-EXOA I... 69 4e-11
sp|O34416|YOAV_BACSU HYPOTHETICAL 33.0 KD PROTEIN IN PELB-PENP I... 69 4e-11
sp|O32256|YVBV_BACSU HYPOTHETICAL 32.8 KD PROTEIN IN ARAR-LACA I... 69 8e-11
>pir||F75109 hypothetical protein PAB0461 - Pyrococcus abyssi (strain Orsay)
>gi|5458102|emb|CAB49591.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 278
Score = 545 bits (1388), Expect = e-154
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MRLNIYAILSILLWSTVASAFKLTLSRLDPISLLFYSSLTSSLIFLVANLVRGNPDWKSI 60
MRLNIYAILSILLWSTVASAFKLTLSRLDPISLLFYSSLTSSLIFLVANLVRGNPDWKSI
Sbjct: 1 MRLNIYAILSILLWSTVASAFKLTLSRLDPISLLFYSSLTSSLIFLVANLVRGNPDWKSI 60
Query: 61 SKNRESAILGFVNPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLTLKE 120
SKNRESAILGFVNPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLTLKE
Sbjct: 61 SKNRESAILGFVNPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLTLKE 120
Query: 121 IGGVIVGFIGILIVGTRGNLSSLRFSDPVGDGLAISSALLFAVYWVMNVNDKRPPEVKMF 180
IGGVIVGFIGILIVGTRGNLSSLRFSDPVGDGLAISSALLFAVYWVMNVNDKRPPEVKMF
Sbjct: 121 IGGVIVGFIGILIVGTRGNLSSLRFSDPVGDGLAISSALLFAVYWVMNVNDKRPPEVKMF 180
Query: 181 WNFAFGTLYLLPNIPRIKFDLLGLLGAIYIGLFEMGVTYLLWLKALETDKAGKVASMVYL 240
WNFAFGTLYLLPNIPRIKFDLLGLLGAIYIGLFEMGVTYLLWLKALETDKAGKVASMVYL
Sbjct: 181 WNFAFGTLYLLPNIPRIKFDLLGLLGAIYIGLFEMGVTYLLWLKALETDKAGKVASMVYL 240
Query: 241 TPVLSLFFISTVVGEKIMLSTLVGLSLILLGIFISQKR 278
TPVLSLFFISTVVGEKIMLSTLVGLSLILLGIFISQKR
Sbjct: 241 TPVLSLFFISTVVGEKIMLSTLVGLSLILLGIFISQKR 278
>pir||D71024 hypothetical protein PH1489 - Pyrococcus horikoshii
>gi|3257913|dbj|BAA30596.1| (AP000006) 298aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 298
Score = 364 bits (924), Expect = e-100
Identities = 186/279 (66%), Positives = 230/279 (81%), Gaps = 8/279 (2%)
Query: 3 LNIYAILSILLWSTVASAFKLTLSRLDPISLLFYSSLTSSLIFLVANLVRGNPDWK--SI 60
+N YAIL++LLWSTVASAFKLTLSRLD IS+LFYSSLTS++IFL+ANL D K SI
Sbjct: 24 MNKYAILAVLLWSTVASAFKLTLSRLDTISMLFYSSLTSTVIFLLANL----KDIKTFSI 79
Query: 61 SKNRESAILGFVNPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLTLKE 120
N S GF+NP YYLVLF+AYS LPAQEAQALNYTWPI+LV+ SS FLGQRL+ ++
Sbjct: 80 KANLNSVFFGFINPFLYYLVLFSAYSILPAQEAQALNYTWPIILVIFSSAFLGQRLSERD 139
Query: 121 IGGVIVGFIGILIVGTRGNLSSLRFSDPVGDGLAISSALLFAVYWVMNVNDKRPPEVKMF 180
GVI+GF+G L+VGTRGNLSSL F++P+GD LA+ SA+++A+YW++N+ D R EVKM
Sbjct: 140 FLGVIIGFLGALVVGTRGNLSSLHFANPMGDLLALCSAIIWAIYWILNLRDPRKAEVKMM 199
Query: 181 WNFAFGTLY--LLPNIPRIKFDLLGLLGAIYIGLFEMGVTYLLWLKALETDKAGKVASMV 238
WNF FG LY +L I IKFD G+LGAIY+G FEMG+T+LLWLKALE+++AGKVAS++
Sbjct: 200 WNFIFGFLYISILGVIEGIKFDPYGVLGAIYVGTFEMGLTFLLWLKALESEEAGKVASLI 259
Query: 239 YLTPVLSLFFISTVVGEKIMLSTLVGLSLILLGIFISQK 277
YLTPVLSL FIS VVGEKI+ ST+VGL+LILLGI +S++
Sbjct: 260 YLTPVLSLLFISIVVGEKILGSTIVGLALILLGIALSRR 298
>pir||B82366 conserved hypothetical protein VC0081 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654478|gb|AAF93259.1|
(AE004099) conserved hypothetical protein [Vibrio
cholerae]
Length = 303
Score = 211 bits (531), Expect = 9e-54
Identities = 108/280 (38%), Positives = 176/280 (62%), Gaps = 13/280 (4%)
Query: 8 ILSILLWSTVASAFKLTLSRLDPISLLFYSSLTSSLIFLVANLVRGNPDWKSISKNRES- 66
+ S+LLWSTVA+AFKLTL+ L+P+ ++ +S+ S+L LV + K I +
Sbjct: 11 LASVLLWSTVATAFKLTLAELNPLQMVTVASIVSALALLV--ICAAMDKLKLIVPTLLAN 68
Query: 67 ----AILGFVNPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLTLKEIG 122
+LG +NPL YYL+LF AYS LPA +AQA+NY+W I L ++++ FLGQR+ ++
Sbjct: 69 PFYYLLLGLINPLAYYLILFKAYSLLPASQAQAINYSWAITLTLMAALFLGQRIRKQDWI 128
Query: 123 GVIVGFIGILIVGTRGNLSSLRFSDPVGDGLAISSALLFAVYWVMNVNDKRPPEVKMFWN 182
+ ++G++++ T+G+L L+F P+G GLA+ S LL+A YW++N +K P V +
Sbjct: 129 ACAMSYLGVVVIATKGDLLGLQFESPLGVGLALLSTLLWAGYWILNTKNKADPIVGVLLG 188
Query: 183 FAFGTLYLL-----PNIPRIKFDLLGLLGAIYIGLFEMGVTYLLWLKALE-TDKAGKVAS 236
F + L N+ G L Y+GLFEMG+T++LWL AL+ T ++++
Sbjct: 189 FLLAIPFALALCWHENLNWQGITTQGWLAVTYVGLFEMGITFVLWLSALKNTQNTARISN 248
Query: 237 MVYLTPVLSLFFISTVVGEKIMLSTLVGLSLILLGIFISQ 276
+++ +P +SLF ++T++GE I +TL+GL LI+ G+ + Q
Sbjct: 249 LIFASPFISLFLLATIIGEAIHPTTLIGLVLIIAGLVVQQ 288
>gi|11497882 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6136504|sp|O29973|Y266_ARCFU HYPOTHETICAL PROTEIN
AF0266 >gi|7482983|pir||B69283 conserved hypothetical
protein AF0266 - Archaeoglobus fulgidus
>gi|2650369|gb|AAB90963.1| (AE001087) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 276
Score = 92.4 bits (226), Expect = 5e-18
Identities = 70/280 (25%), Positives = 132/280 (47%), Gaps = 15/280 (5%)
Query: 1 MRLNIYAILSILLWSTVASAFKLTLSRLDPISLLFYSSLTSSLIFLVANLVRGNPDWKSI 60
M+ I L++ W +A K ++ L PI++ ++ +F V ++ WK +
Sbjct: 1 MKKWIVLALTVTFWGLAFTAIKYSVRFLSPIAIASLRFAIANTLFAVIIILGKRIKWKDL 60
Query: 61 SKNRESAILGFVNPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLTLKE 120
K LG Y++ L + + A + PI +++LS+ FL +R+T +
Sbjct: 61 PK---VFALGIFGVSVYHVFLNLGEVYISSGVASVVISLAPIFVLILSAIFLRERITYSK 117
Query: 121 IGGVIVGFIGILIVGTRGNLSSLRFSDPVGDGLAISSALLFAVYWVMNVN--DKRPPEVK 178
+ G+I+ F+G++++ S +++ G L + S + A+Y + K P
Sbjct: 118 VVGIIIAFLGVVVI------SEPSYANIYGIALVMVSTVAAAIYTTFGKSLLSKYNPITL 171
Query: 179 MFWNFAFGTLYLLPNIPRIKFDL---LGLLGAI-YIGLFEMGVTYLLWLKALETDKAGKV 234
G++ L P +P L L L+G+I ++G+F YL W LE ++A +
Sbjct: 172 TSNAMVLGSIPLYPFLPDSIRSLGGDLNLIGSIVFLGIFSTFFGYLGWYYFLEKEEASRA 231
Query: 235 ASMVYLTPVLSLFFISTVVGEKIMLSTLVGLSLILLGIFI 274
+ + PV+SL + ++ E + L T+ G L+LLGI+I
Sbjct: 232 SVFLLAIPVVSLLAGNILLAEPLTLRTVAGSGLVLLGIYI 271
>sp|O31448|YBFH_BACSU HYPOTHETICAL 33.8 KD PROTEIN IN GLPT-PURT INTERGENIC REGION
>gi|7474511|pir||C69749 conserved hypothetical protein
ybfH - Bacillus subtilis >gi|2632507|emb|CAB12015.1|
(Z99105) similar to hypothetical proteins [Bacillus
subtilis] >gi|3599643|dbj|BAA33118.1| (AB006424) ybfH
[Bacillus subtilis]
Length = 306
Score = 81.9 bits (199), Expect = 8e-15
Identities = 71/286 (24%), Positives = 141/286 (48%), Gaps = 18/286 (6%)
Query: 4 NIYAILSILLWSTVASAFKLTLSRLDPISLLFYSSLTSSLIFLVANLVRGNP-DWKSISK 62
+I AI++IL+W T + K+ L+ P+ +LFY L F+ LVR N +++ +
Sbjct: 10 HIAAIVTILIWGTTFISTKVLLADFSPMEILFYRFLMG---FIALILVRPNMIPFRNWRQ 66
Query: 63 NRESAILGFVNPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFL-GQRLTLKEI 121
A G Y+L+ A + A + P++ VL+ + L G++L L +
Sbjct: 67 ELLFAGAGLFGVTLYFLLENIALTYTYASNVGMIVSIIPMITAVLAHFLLEGEKLRLTFL 126
Query: 122 GGVIVGFIGILIVGTRGNLSSLRFSDPVGDGLAISSALLFAVY--WVMNVNDKRPPEVKM 179
G I IG+L++ GN+ LR + P+GD +A +AL+F Y ++ ++ +++
Sbjct: 127 IGFISALIGLLLITFNGNVV-LRLN-PLGDIMAAGAALVFGGYSIFMKKLSAYEYHIIEL 184
Query: 180 FWN-FAFGTLYLLPNIPRIKFDL--------LGLLGAIYIGLFEMGVTYLLWLKALETDK 230
F +G L+++P + F +L +++G+ + + W ++
Sbjct: 185 TQRVFLYGLLFMVPALFLFDFHFDLSRFSSASNILNMLFLGIGASALCFATWNYSVGVLG 244
Query: 231 AGKVASMVYLTPVLSLFFISTVVGEKIMLSTLVGLSLILLGIFISQ 276
A K ++ +Y+ PV+++ ++ E + L+G +L LLG++IS+
Sbjct: 245 AVKSSAYIYMVPVITIAASVLILHENMTWIALLGGALTLLGLYISE 290
>gi|11498121 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6136536|sp|O29740|Y510_ARCFU HYPOTHETICAL PROTEIN
AF0510 >gi|7483020|pir||F69313 conserved hypothetical
protein AF0510 - Archaeoglobus fulgidus
>gi|2650107|gb|AAB90720.1| (AE001068) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 289
Score = 79.2 bits (192), Expect = 5e-14
Identities = 67/282 (23%), Positives = 120/282 (41%), Gaps = 10/282 (3%)
Query: 2 RLNIYAILSILLWSTVASAFKLTLSRLDPISLLFYSSLTSSLIFLVANLVRGNPDWKSIS 61
+ ++ L++L+W+ K+ L LDP +L FY L +S + + + S S
Sbjct: 4 KTHLLLALTMLIWAGSFIFIKIGLKELDPFNLAFYRFLLASPLLMAWVFWKRGLAKPSGS 63
Query: 62 KNRESAILGFVNPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLTLKEI 121
+ ++L Y F A A A L T + V L G+ +++
Sbjct: 64 EWLHLSVLALSGVTLLYAFQFLALKYTTATNASILINTSAVF-VALWGLVKGEA-NPRKL 121
Query: 122 GGVIVGFIGILIVGTRGNLSSLRFSDPVGDGLAISSALLFAVYWVMNVND--KRPPEVKM 179
GV + F G++++ ++G L GD L I L+AVY V+ K E
Sbjct: 122 AGVFLSFAGVVLIVSKGTLEFFSSKTIFGDVLMIVDGFLWAVYTVLGSKMLLKYDHETLT 181
Query: 180 FWNFAFGTLYLLPNIPR------IKFDLLGLLGAIYIGLFEMGVTYLLWLKALETDKAGK 233
+ FA GT++L+P + F+ + +Y+ + Y++W AL +
Sbjct: 182 AYAFALGTIFLIPFALMSGFANPVTFNPETVAALLYLSILCSVFAYVVWYYALTNADSTS 241
Query: 234 VASMVYLTPVLSLFFISTVVGEKIMLSTLVGLSLILLGIFIS 275
VA VYL P+ + F + EK T +G + + G++++
Sbjct: 242 VAVYVYLVPLFTAIFAFYALNEKPDFFTAIGGIITIAGVYLT 283
>pir||B75509 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6458202|gb|AAF10091.1|AE001910_4 (AE001910)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 301
Score = 77.3 bits (187), Expect = 2e-13
Identities = 66/281 (23%), Positives = 121/281 (42%), Gaps = 17/281 (6%)
Query: 8 ILSILLWSTVASAFKLTLSRLDPISLLFYSSLTSSLIFLVANLVRGNPDWKSISKNRES- 66
+++++ W++ + ++ L P L Y L +S+ L+ V P + R+
Sbjct: 24 VVTLVFWASAFTGIRIGLEHFSPGHLALYRFLVASVTLLLVMAVTRLP----VPAPRDLW 79
Query: 67 --AILGFVNPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLTLKEIGGV 124
+L Y+++L +PA A + P++ +L++ FLG+ L G
Sbjct: 80 QIGVLSVAGISLYHVLLNMGERSVPAGTASLIIAAGPVITALLAARFLGESLNPLGWLGT 139
Query: 125 IVGFIGILIVGTRGNLSSLRFSDPVGDGLAISSALLFAVYWVMNVNDKRPPEVKMF--WN 182
V G+ ++ G L FS G L + +A ++Y+V F W+
Sbjct: 140 AVSLGGVALI-VLGQGQGLGFS--AGALLVLGAAFFTSLYFVFQKGVLARVGSLRFTVWS 196
Query: 183 FAFGTLYLLPNIPRIKFDLLGL-----LGAIYIGLFEMGVTYLLWLKALETDKAGKVASM 237
GT+ LL +P +L L +Y+G+F + YL W A+ AG +S
Sbjct: 197 LILGTVPLLVFLPGFGTELRAAPLPAHLAVLYLGVFPSALAYLTWTFAISRVGAGVTSSF 256
Query: 238 VYLTPVLSLFFISTVVGEKIMLSTLVGLSLILLGIFISQKR 278
+Y++PV +L ++GE TL+G + L G+ + R
Sbjct: 257 LYVSPVFALLMAWALLGEVPGAVTLLGGVIALAGVLLVNTR 297
>pir||A83109 hypothetical protein PA4287 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9950508|gb|AAG07675.1|AE004845_1
(AE004845) hypothetical protein [Pseudomonas aeruginosa]
Length = 296
Score = 74.9 bits (181), Expect = 1e-12
Identities = 63/281 (22%), Positives = 127/281 (44%), Gaps = 11/281 (3%)
Query: 5 IYAILSILLWSTVASAFKLTLSRLDPISLLFYSSLTSSLI---FLVANLVRGNPDWKSIS 61
++ +L++ +W+ KL + + P + F+ L L F++ ++R ++
Sbjct: 4 LFPLLAVFIWAGNTVVNKLAVGIIQPAEIGFFRWLLVGLALTPFMLGPVLRNRR--YILA 61
Query: 62 KNRESAILGFVNPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLTLKEI 121
+ +LG + Y + + A + A + P++ + L+S L RL +
Sbjct: 62 NLGKFVVLGLLGMAVYQSLAYYAAALTSATNMGIILSLMPLMSLGLASSILAHRLNAGAL 121
Query: 122 GGVIVGFIGILIVGTRGNLSSL-RFSDPVGDGLAISSALLFAVYWVM--NVNDKRPPEVK 178
G +V G+++V ++G+L +L +GD + I + L +AVY V+ + K P
Sbjct: 122 LGALVSLAGVVLVISQGHLGALLEHGVNLGDAMMIVATLAYAVYSVLLKKWSLKLPAMQL 181
Query: 179 MFWNFAFGTLYLLPNI---PRIKFDLLGLLGAIYIGLFEMGVTYLLWLKALETDKAGKVA 235
++ L LLP PR + L +Y LF V L W+ + ++A
Sbjct: 182 LYLQVLVAILALLPLYLLSPRTGLNAANLPLVLYAALFASIVAALAWMHGVARLGPSRMA 241
Query: 236 SMVYLTPVLSLFFISTVVGEKIMLSTLVGLSLILLGIFISQ 276
L P+++ + V+GE++ + LVG +L L G+ +++
Sbjct: 242 LFFNLLPIITACIATLVLGERLTVHHLVGGALTLAGVLLAE 282
>pir||D82411 conserved hypothetical protein VCA0835 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9658264|gb|AAF96733.1|
(AE004411) conserved hypothetical protein [Vibrio
cholerae]
Length = 328
Score = 73.0 bits (176), Expect = 4e-12
Identities = 76/285 (26%), Positives = 131/285 (45%), Gaps = 22/285 (7%)
Query: 5 IYAILSILLWSTVASAFKLTLSRLDPI--SLLFYSSLTSSLIFLVANLVRGNPDWKSISK 62
+Y + +ILLW ++ + + PI + L Y+ T L+F + G P K+ S
Sbjct: 25 LYGVAAILLWGSLMALTRRVAEEFSPIGGAALIYTVSTLFLLFAM-----GMPRLKAGS- 78
Query: 63 NRESAILG--FVN-PLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLTLK 119
+R I G FV+ + L L A RL A E +NY WP L V+++ + ++
Sbjct: 79 SRYILIGGALFVSYEICLALALGMASDRLQAIEMSVINYLWPALTVLIAVLLSQRAVSFW 138
Query: 120 EIGGVIVGFIGIL--IVGTRG----NLSSLRFSDPVGDGLAISSALLFAVYWVMNVNDKR 173
V + F G+ IV +G + S+ ++P +A++ A ++A+Y + R
Sbjct: 139 VYPSVGLAFAGVAWTIVAEQGISLADFSARIATNPAVYAMALTGAFIWAIYCNVTQRLAR 198
Query: 174 PPE-VKMFWNFAFGTLYL---LPNIPRIKFDLLGLLGAIYIGLFEMGVTYLLWLKALETD 229
+ +F+ TL+L L N P + F + G + + MG Y LW A+
Sbjct: 199 GQNAIVLFFAATAATLWLQYALSNEPALSFTGSSM-GTLLLTGIVMGSGYALWNVAILRG 257
Query: 230 KAGKVASMVYLTPVLSLFFISTVVGEKIMLSTLVGLSLILLGIFI 274
+A++ Y TPV+S F S ++G + LS G+ ++ G I
Sbjct: 258 NMLLLATLSYFTPVISTLFSSLILGVVLGLSFWQGVIMVTFGSLI 302
>pir||G72760 hypothetical protein APE0076 - Aeropyrum pernix (strain K1)
>gi|5103464|dbj|BAA78985.1| (AP000058) 296aa long
hypothetical protein [Aeropyrum pernix]
Length = 296
Score = 71.0 bits (171), Expect = 1e-11
Identities = 73/271 (26%), Positives = 129/271 (46%), Gaps = 18/271 (6%)
Query: 7 AILSILLWSTVASAFKLTLSR-LDPISLLFYSSLTSSLIFL-VANLVRGNPDWKSISKNR 64
A+ + LLWST+ +L +R D +L+ +L SL+ L + + R P +S +
Sbjct: 27 ALTAALLWSTIGVVQRLAEARGADTETLIVGRTLGGSLLALALLAIYRAVPTRRSFAV-- 84
Query: 65 ESAILGFVNPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLTLKEIGGV 124
A+LG PL+Y ++ + S + A A L YT P + +L + FLG+ +++++ +
Sbjct: 85 --AVLGLA-PLYYTYMM--SVSIVGAAVASLLLYTAPAWVALLGTVFLGETPSVRDVVTI 139
Query: 125 IVGFIGILIV--GTRGNLSSLRFSDPVGDGLAISSALLFAVYWVM----NVNDKRPPEVK 178
I+G G +V G G LR +G L ++S +A+Y VM EV
Sbjct: 140 ILGLAGAALVSLGGEGKAGELRL---LGIVLGVASGFFYALYIVMARFFQSRGAGVMEVS 196
Query: 179 MFWNFAFGTLYLLPNIPRIKFDLLGLLGAIYIGLFEMGVTYLLWLKALETDKAGKVASMV 238
+ G L + P + + + + +IY +F M YLL + AL +A +V+ M
Sbjct: 197 LAPIALTGPLLGVALKPSLPPNSVEVAASIYFAVFTMVTPYLLNVYALRRIEAHRVSVMS 256
Query: 239 YLTPVLSLFFISTVVGEKIMLSTLVGLSLIL 269
+ P+ ++ ++GE + +G LIL
Sbjct: 257 LIEPLSAVLLAVLLLGEDLTALQALGGVLIL 287
>pir||B75194 hypothetical protein PAB0040 - Pyrococcus abyssi (strain Orsay)
>gi|5457510|emb|CAB49001.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 295
Score = 71.0 bits (171), Expect = 1e-11
Identities = 64/277 (23%), Positives = 127/277 (45%), Gaps = 13/277 (4%)
Query: 5 IYAILSILLWSTVASAFKLTLS-RLDPISLLFYSSLTSSLIFLVANL-VRGNPDWKSISK 62
I L+ +W T+ K L +++FY +T +L+FL L +G P +
Sbjct: 25 ILVFLAASMWGTLGIFAKFLYKFNLSTYTIIFYR-VTFALVFLFIYLKAKGMPILIPRER 83
Query: 63 NRESAILGFVNPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLTLKEIG 122
+ I F + +Y + F A + YT P + + +T +++
Sbjct: 84 LKFYIIYAFFSIFLFYSLYFYTVKISSVSFAVLMLYTAPAYSTIFGRLIFKEEITQRKLI 143
Query: 123 GVIVGFIGILIVGTRGNLSSLRFSDPVGDGLAISSALLFAVYWV---MNVNDKRPPEVKM 179
V + G+LI+ + G +S + VG ++S L +A+Y V M VN + P +V +
Sbjct: 144 AVALVIAGVLILNS-GEISFTGKAIAVG----LASGLTYALYGVFAKMAVNKEEPEQV-L 197
Query: 180 FWNFAFGTLYLLPNIPRIKFDLLGLLGAIYIGLFEMGVTYLLWLKALETDKAGKVASMVY 239
F G ++LLP K L + + + F + Y+L+ +AL++ + + + +
Sbjct: 198 FNVLLIGAIFLLP-FTSFKVPLQSVPYLLALAFFPTFLGYILYNRALKSVEVSRASVVAT 256
Query: 240 LTPVLSLFFISTVVGEKIMLSTLVGLSLILLGIFISQ 276
+ PV+++ + GEK+ + L+G S+I+ G +++
Sbjct: 257 IEPVVAMVLAFLIFGEKLTIIQLIGASMIIGGAILAR 293
>pir||B83323 hypothetical protein PA2576 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9948638|gb|AAG05964.1|AE004686_2
(AE004686) hypothetical protein [Pseudomonas aeruginosa]
Length = 299
Score = 69.9 bits (168), Expect = 3e-11
Identities = 55/217 (25%), Positives = 106/217 (48%), Gaps = 7/217 (3%)
Query: 61 SKNRESAILGFVNPLFY---YLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLT 117
S RE+ +L ++ +F +++LF +YSR A+ P +LV L + FLG+++T
Sbjct: 62 SLGREAFLLALLSGVFIVGNWVLLFASYSRASIAIGTAVYNVQPFMLVGLGAAFLGEKVT 121
Query: 118 LKEIGGVIVGFIGIL-IVGTRGNLSSLRFSDPVGDGLAISSALLFA-VYWVMNVNDKRPP 175
+++G + + F G+L IV G+ + R G LA+++ALL+A ++ PP
Sbjct: 122 ARKLGWLGLSFAGMLAIVNAHGDSGAPRGDYLFGILLALAAALLYAFAALIVKRLQGTPP 181
Query: 176 EVKMFWNFAFGTLYLLP--NIPRIKFDLLGLLGAIYIGLFEMGVTYLLWLKALETDKAGK 233
+ G L L P N+ + D+ +G+ G+ Y+L A++
Sbjct: 182 HLIALIQVGTGVLMLAPLANLAELPRDVAPWASLATLGIVHTGLMYVLLYGAIQKLPTAL 241
Query: 234 VASMVYLTPVLSLFFISTVVGEKIMLSTLVGLSLILL 270
++ ++ PV ++ V ++ L+ +G++ ILL
Sbjct: 242 TGALSFIYPVAAILVDWLVFEHRLSLAQWLGVAAILL 278
>sp|P37511|YYAM_BACSU HYPOTHETICAL 32.9 KD PROTEIN IN TETB-EXOA INTERGENIC REGION
>gi|2127011|pir||S66005 conserved hypothetical protein
yyaM - Bacillus subtilis >gi|467365|dbj|BAA05211.1|
(D26185) unknown [Bacillus subtilis]
>gi|2636628|emb|CAB16118.1| (Z99124) similar to
hypothetical proteins [Bacillus subtilis]
Length = 305
Score = 69.5 bits (167), Expect = 4e-11
Identities = 77/296 (26%), Positives = 134/296 (45%), Gaps = 40/296 (13%)
Query: 3 LNIYAIL---SILLWSTVASAFKLTLSRLDPISLLFYSSLTSSLIFLVANLVRGNPDWKS 59
LNIY +L SI +T A K T+ P S + ++ + L+ +
Sbjct: 4 LNIYIMLLGFSIFTGATFNLA-KYTVGYFSPSSSAAWRFGLAAAVMLIILIFTEGIKKSQ 62
Query: 60 ISKNRESAI-LGFV-----NPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLG 113
+ KN S I LG + N LF+ + +T+ P A + P+L +L+ L
Sbjct: 63 LRKNAVSYIVLGIIGIFGFNALFFVGLKYTS----PVNGALIMGLN-PLLTAILARIILK 117
Query: 114 QRLTLKEIGGVIVGFIGILIVGTRGNLSSLR-FSDPVGDGLAISSALLFAVYWVMN---V 169
+T K++ G+ FIG+L+V T+G++ +++ S GD + + + +A+Y V+ V
Sbjct: 118 DNMTKKQVLGIFFAFIGVLLVITQGSIETIKTLSISGGDLIIFTGNVCWALYGVLGRRFV 177
Query: 170 NDKRPPEVKMFWNFAFGTLYL------------LPNIPRIKFDLLGLLGAI-YIGLFEMG 216
D P + G + L L NIP +G+ GAI ++ F
Sbjct: 178 KDGTPLSTTTY-TMVIGAVSLIVVSLFTSKPVSLSNIP------IGVWGAIAFMAFFTSV 230
Query: 217 VTYLLWLKALETDKAGKVASMVYLTPVLSLFFISTVVGEKIMLSTLVGLSLILLGI 272
+ YL W + ++ A K + L PV+++ IS VG I + ++G L++LG+
Sbjct: 231 LGYLWWNQGIKEIGASKTSLFFNLVPVVTM-IISFAVGTPIKVFQVIGAVLVILGV 285
>sp|O34416|YOAV_BACSU HYPOTHETICAL 33.0 KD PROTEIN IN PELB-PENP INTERGENIC REGION
>gi|7474661|pir||G69897 conserved hypothetical protein
yoaV - Bacillus subtilis >gi|2619001|gb|AAB84425.1|
(AF027868) YoaV [Bacillus subtilis]
>gi|2634270|emb|CAB13769.1| (Z99114) similar to
hypothetical proteins [Bacillus subtilis]
Length = 292
Score = 69.5 bits (167), Expect = 4e-11
Identities = 67/285 (23%), Positives = 132/285 (45%), Gaps = 26/285 (9%)
Query: 8 ILSI-LLWSTVASAFKLTLSRLDPISLLFYSSLTSSL----IFLVANLVRGNPDWKSISK 62
I+S+ L+W A K+ + + P L +S L + +FL+ + R K +S
Sbjct: 8 IISVTLIWGYTWVAMKVGIHDIPP---LLFSGLRLFIGAVPLFLILFIQR-----KKLSI 59
Query: 63 NRESA----ILGFVNPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLTL 118
+E I+ + L Y +L + + + L YT PI + V+S + L +++ +
Sbjct: 60 QKEHLKSYIIMSLLMGLGYMGILTYGMQFVDSGKTSVLVYTMPIFVTVISHFSLNEKMNV 119
Query: 119 KEIGGVIVGFIGILIVGTRGNLSSLRFSDPVGDGLAISSALLFAVYWVMN-VNDKRPPEV 177
+ G++ G G+L + + L+ + S G+ + +AL + + V + + K +
Sbjct: 120 YKTMGLVCGLFGLLFIFGKEMLN-IDQSALFGELCVLVAALSWGIANVFSKLQFKHIDII 178
Query: 178 KM-FWNFAFGTLYLL------PNIPRIKFDLLGLLGAIYIGLFEMGVTYLLWLKALETDK 230
M W+ G + LL +P ++ + ++ GL G T+++W L +
Sbjct: 179 HMNAWHLMMGAVMLLVFSFIFEAVPSAEWTYQAVWSLLFNGLLSTGFTFVVWFWVLNQIQ 238
Query: 231 AGKVASMVYLTPVLSLFFISTVVGEKIMLSTLVGLSLILLGIFIS 275
A K + + PVL+LFF + E+I ++ ++G LI GIF++
Sbjct: 239 ASKASMALMFVPVLALFFGWLQLHEQITINIILGALLICCGIFMN 283
>sp|O32256|YVBV_BACSU HYPOTHETICAL 32.8 KD PROTEIN IN ARAR-LACA INTERGENIC REGION
>gi|7474757|pir||F70030 conserved hypothetical protein
yvbV - Bacillus subtilis >gi|2635913|emb|CAB15405.1|
(Z99121) similar to hypothetical proteins [Bacillus
subtilis]
Length = 305
Score = 68.7 bits (165), Expect = 8e-11
Identities = 65/278 (23%), Positives = 125/278 (44%), Gaps = 28/278 (10%)
Query: 11 ILLWSTVASAFKLTLSRLDPISLLFYSSLTSSLIFLVANLVRGNPDWKSISKNRESA--- 67
+++W K L+ P+ +L L+ ++ L R I K R
Sbjct: 17 VIMWGVNWPLSKAALAYSPPLLFAGIRTLIGGLLLVIVALPR-------IHKLRLKETWP 69
Query: 68 ---ILGFVNPLFYYLVLFTAYSRLPAQEAQALNYTWPILLVVLSSYFLGQRLTLKEIGGV 124
+ +N +Y + + LPA A+ + P+L+ V S +LG+ + + ++ G+
Sbjct: 70 IYLVSALLNITLFYGLQTIGLNYLPAGLFSAIVFFQPVLMGVFSWLWLGESMFVMKVIGL 129
Query: 125 IVGFIGILIVGTRGNLSSLRFSDPVGDGLAISSALLFAVYWVMNVNDKRPPEVKMFWNFA 184
I+GF G+ ++ G + +G LA+ SA+ +A+ V K V W A
Sbjct: 130 ILGFAGVAVISAAGFGGHI---SVIGVLLALGSAVSWALGTV--YMKKTGSRVDSIWMVA 184
Query: 185 ----FGTLYLL------PNIPRIKFDLLGLLGAIYIGLFEMGVTYLLWLKALETDKAGKV 234
G+++LL + I++ + ++I +F + + +L++ + + +A KV
Sbjct: 185 LQLTIGSVFLLISGFWTESFSAIQWTAPFITSLLFISVFVIALGWLVFFTLVGSGEASKV 244
Query: 235 ASMVYLTPVLSLFFISTVVGEKIMLSTLVGLSLILLGI 272
AS +L P++S+ S + E + LS L GL LI+ I
Sbjct: 245 ASYTFLIPLISIVASSIFLHEPLTLSLLAGLLLIVTSI 282
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.144 0.424
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95185849
Number of Sequences: 2977
Number of extensions: 3833905
Number of successful extensions: 12829
Number of sequences better than 1.0e-10: 15
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 12788
Number of HSP's gapped (non-prelim): 19
length of query: 278
length of database: 189,106,746
effective HSP length: 52
effective length of query: 226
effective length of database: 157,985,422
effective search space: 35704705372
effective search space used: 35704705372
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 164 (68.3 bits)