BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0462 (PAB0462) DE:CATION EFFLUX SYSTEM PROTEIN
(ZINC/CADMIUM)
(283 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75109 cation efflux system protein (zinc/cadmium) PAB0462 ... 552 e-156
sp|Q57891|Y449_METJA HYPOTHETICAL PROTEIN MJ0449 >gi|2127930|pir... 338 5e-92
pir||F69119 cation efflux system protein (zinc/cadmium) - Methan... 179 4e-44
dbj|BAB04957.1| (AP001511) cation efflux system (zinc/cadmium) [... 174 9e-43
gb|AAC63637.1| (AC005309) unknown protein [Arabidopsis thaliana] 153 2e-36
gi|11499965 conserved hypothetical transmembrane protein [Archae... 152 4e-36
gb|AAG20064.1| (AE005086) cation efflux system protein (zinc/cad... 146 2e-34
pir||F72323 conserved hypothetical protein - Thermotoga maritima... 146 3e-34
dbj|BAB04431.1| (AP001509) cation efflux system [Bacillus halodu... 145 6e-34
pir||C69781 cation efflux system homolog ydfM - Bacillus subtili... 144 1e-33
pir||C69023 conserved hypothetical protein MTH1172 - Methanobact... 138 8e-32
sp|P46348|YEAB_BACSU HYPOTHETICAL 31.8 KD PROTEIN IN GABP-GUAA I... 132 3e-30
gb|AAC44640.1| (U31756) OrfX [Bacillus subtilis] 129 4e-29
pir||D83150 probable transporter PA3963 [imported] - Pseudomonas... 124 1e-27
pir||G72363 cation efflux system protein - Thermotoga maritima (... 117 1e-25
pir||B69772 conserved hypothetical protein ydbO - Bacillus subti... 115 8e-25
pir||H82045 conserved hypothetical protein VC2690 [imported] - V... 114 1e-24
pir||G70477 hypothetical protein aq_2073 - Aquifex aeolicus >gi|... 112 5e-24
sp|Q9ZCC5|P34_RICPR PROTEIN P34 >gi|7467934|pir||A71645 protein ... 112 5e-24
pir||C81369 probable transmembrane transport protein Cj0948c [im... 107 1e-22
pir||E75421 conserved hypothetical protein - Deinococcus radiodu... 106 2e-22
sp|P21559|P34_RICRI PROTEIN P34 >gi|97211|pir||S13095 P34 protei... 105 7e-22
pir||H70941 hypothetical protein Rv2025c - Mycobacterium tubercu... 105 7e-22
sp|P32159|YIIP_ECOLI HYPOTHETICAL 32.9 KD PROTEIN IN CPXA-PFKA I... 104 9e-22
dbj|BAA99362.1| (AP002526) ESTs AU032649(S13048),D47505(S13048) ... 104 9e-22
gb|AAD34683.1|AC006341_11 (AC006341) >F3O9.11 [Arabidopsis thali... 102 4e-21
pir||T00555 hypothetical protein F12L6.11 - Arabidopsis thaliana... 102 6e-21
gb|AAD30224.1|AC007202_6 (AC007202) EST gb|AA404917 comes from t... 102 6e-21
pir||C69612 cation-efflux system membrane protein czcD - Bacillu... 94 1e-18
dbj|BAA19587.1| (D87026) membrane protein [Bacillus stearothermo... 92 9e-18
gi|11499720 conserved hypothetical transmembrane protein [Archae... 88 1e-16
gb|AAB53029.1| (U62055) CzcD [Bacillus subtilis] 88 1e-16
pir||H71078 probable cation efflux system protein czcD - Pyrococ... 87 2e-16
pir||T31797 hypothetical protein R02F11.3 - Caenorhabditis elega... 87 3e-16
sp|P74068|YC63_SYNY3 HYPOTHETICAL 33.3 KD PROTEIN SLL1263 >gi|74... 87 3e-16
pir||T40838 probable transporter - fission yeast (Schizosaccharo... 86 4e-16
sp|P13512|CZCD_ALCEU COBALT-ZINC-CADMIUM RESISTANCE PROTEIN CZCD... 84 2e-15
sp|P94178|CZCD_ALCSP CATION EFFLUX SYSTEM PROTEIN CZCD >gi|21209... 84 2e-15
sp|P75757|YBGR_ECOLI HYPOTHETICAL 34.7 KDA PROTEIN IN PNUC-AROG ... 81 1e-14
pir||E70392 cation efflux system (czcD-like) - Aquifex aeolicus ... 81 2e-14
pir||T16470 hypothetical protein F56C9.3 - Caenorhabditis elegan... 78 1e-13
pir||E81321 probable cation transport protein Cj1163c [imported]... 77 3e-13
pir||C83595 probable cation efflux system protein PA0397 [import... 77 3e-13
pir||T46028 hypothetical protein T10K17.270 - Arabidopsis thalia... 75 8e-13
pir||T16640 hypothetical protein PDB1.1 - Caenorhabditis elegans... 75 1e-12
pir||T44365 cation-efflux system membrane protein homolog [impor... 75 1e-12
gb|AAF26917.1|AF210843_14 (AF210843) putative transport protein ... 74 2e-12
pir||G82752 cobalt-zinc-cadmium resistance protein XF0866 [impor... 74 2e-12
pir||A75437 cation efflux system protein - Deinococcus radiodura... 74 2e-12
pir||D33830 cation efflux system membrane protein czcD - Alcalig... 71 1e-11
gb|AAC32485.1| (AF044951) transport protein [Staphylococcus aureus] 69 4e-11
pir||T35276 probable efflux protein - Streptomyces coelicolor >g... 68 1e-10
>pir||H75109 cation efflux system protein (zinc/cadmium) PAB0462 - Pyrococcus
abyssi (strain Orsay) >gi|5458104|emb|CAB49593.1|
(AJ248285) CATION EFFLUX SYSTEM PROTEIN (ZINC/CADMIUM)
[Pyrococcus abyssi]
Length = 283
Score = 552 bits (1406), Expect = e-156
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 1 MEEELKPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKK 60
MEEELKPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKK
Sbjct: 1 MEEELKPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKK 60
Query: 61 PPDESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSI 120
PPDESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSI
Sbjct: 61 PPDESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSI 120
Query: 121 LVKELMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFV 180
LVKELMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFV
Sbjct: 121 LVKELMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFV 180
Query: 181 VALFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHV 240
VALFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHV
Sbjct: 181 VALFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHV 240
Query: 241 ELHIEVSPETSLKKAHDISEEVKRKVESLPEVSEAFIHVDIRE 283
ELHIEVSPETSLKKAHDISEEVKRKVESLPEVSEAFIHVDIRE
Sbjct: 241 ELHIEVSPETSLKKAHDISEEVKRKVESLPEVSEAFIHVDIRE 283
>sp|Q57891|Y449_METJA HYPOTHETICAL PROTEIN MJ0449 >gi|2127930|pir||A64356 gabP 5'-region
hypothetical protein homolog MJ0449 - Methanococcus
jannaschii >gi|1591153|gb|AAB98438.1| (U67496)
hypothetical transmembrane protein yeaB [Methanococcus
jannaschii]
Length = 283
Score = 338 bits (857), Expect = 5e-92
Identities = 160/281 (56%), Positives = 219/281 (76%)
Query: 1 MEEELKPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKK 60
M E KPLI+SI+GN +LG++K+++G SI+LISDGIHSLSD +TS++G +GVK++ K
Sbjct: 1 MREVEKPLILSIVGNILLGLIKIIIGYVYSSISLISDGIHSLSDVITSIIGIIGVKIASK 60
Query: 61 PPDESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSI 120
PPDESHP+GHSRFE LF+FF+G L AYEI + ++ R++ E I + MV VA+LSI
Sbjct: 61 PPDESHPYGHSRFECLFSFFIGLALFFTAYEIGKFAVERIIYGEVIEVNAIMVGVAILSI 120
Query: 121 LVKELMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFV 180
+VKELMTRY+L VGK+L+++++IADAYHHRSD LS++VVLVG LQ+ GI++GDA+AG +
Sbjct: 121 VVKELMTRYSLFVGKKLNSQVLIADAYHHRSDALSSVVVLVGLLLQKFGIYYGDAIAGII 180
Query: 181 VALFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHV 240
VAL + KV +I L N++YLTGRAPP + + IE+ A +VD V+GVHD++AHYVG ++HV
Sbjct: 181 VALMIAKVAFDICLTNIDYLTGRAPPKKFFELIEKEALNVDKVIGVHDIKAHYVGPRIHV 240
Query: 241 ELHIEVSPETSLKKAHDISEEVKRKVESLPEVSEAFIHVDI 281
ELH+EV S K+ HDI VK ++ESL V A++HVDI
Sbjct: 241 ELHVEVPSNISAKEMHDIEVAVKNRLESLENVERAYVHVDI 281
>pir||F69119 cation efflux system protein (zinc/cadmium) - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2623026|gb|AAB86353.1| (AE000941) cation efflux
system protein (zinc/cadmium) [Methanobacterium
thermoautotrophicum]
Length = 298
Score = 179 bits (449), Expect = 4e-44
Identities = 92/270 (34%), Positives = 159/270 (58%), Gaps = 8/270 (2%)
Query: 14 GNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRF 73
GN +L + +VG+ + S+AL+++ H+LSD +TSV+ ++G ++ ++PPD HP+GH R
Sbjct: 20 GNVLLTSLNFLVGISSGSVALVAEAAHTLSDVLTSVITYIGFRIGQRPPDRQHPYGHGRA 79
Query: 74 EPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTP---TMVIVALLSILVKELMTRYA 130
E L + L +++YEI ++ ++ + L P T ++A I+ MT Y
Sbjct: 80 EALVGLVVVVFLGIISYEILSEAYRKLF----LELAPPDYTAALMAGFGIIANIAMTTYI 135
Query: 131 LSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALFVGKVGV 190
+G+R+++ I+ADA H + D+ S I +++G LG+ F D L ++A+ V K
Sbjct: 136 RRIGERINSPAIVADAQHQKVDIFSCIAIMLGVAGSHLGLRFLDPLVAVIIAVLVLKTAF 195
Query: 191 EILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELHIEVSPET 250
++ ENVN + G P E+ + IE+ A SVDGV G+H++R ++ G V+LHIEV +
Sbjct: 196 DVGRENVNNILGAVPSPEIMEDIEKSAMSVDGVKGLHEVRINHFGPYASVDLHIEVDGDM 255
Query: 251 SLKKAHDISEEVKRKV-ESLPEVSEAFIHV 279
L+ AH I+ +V+R+V E + + +HV
Sbjct: 256 MLRDAHRIAHDVERRVIEDIDIIKIVNVHV 285
>dbj|BAB04957.1| (AP001511) cation efflux system (zinc/cadmium) [Bacillus
halodurans]
Length = 300
Score = 174 bits (437), Expect = 9e-43
Identities = 97/279 (34%), Positives = 160/279 (56%), Gaps = 10/279 (3%)
Query: 10 VSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFG 69
+ I+ N L +K +VG+ S ALI+D +HS SD V+SVV +GV+ +K PPDE HP+G
Sbjct: 17 IGIVANLGLAAMKAIVGMIANSKALIADAVHSASDVVSSVVVLIGVRAAKMPPDEDHPYG 76
Query: 70 HSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVA-LLSILVKELMTR 128
H + E + + + LL +V +EIA + E + + T+ I A L+SI VKE + R
Sbjct: 77 HGKAESVASIIVAVLLFIVGFEIAVSAFQSFF--EPVEVPRTLAIYAVLISIFVKEGLFR 134
Query: 129 YALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLG-------IWFGDALAGFVV 181
Y +GK+ + ++ DA+HHRSDVLS+ L+G G LG + +GDA+A VV
Sbjct: 135 YKHYLGKKFKSDALVTDAWHHRSDVLSSFAALLGIGAAILGGYLHIQWLVYGDAVASAVV 194
Query: 182 ALFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVE 241
A+ +GK+ ++ + ++ E ++ E A+SVDGV+ + A G + ++
Sbjct: 195 AVLIGKMAWDLGNQAIHNTLDHVLHDEDTVEMREAAKSVDGVMNLDAFHAREHGHYVIID 254
Query: 242 LHIEVSPETSLKKAHDISEEVKRKVESLPEVSEAFIHVD 280
+ I V+P +++ H I++ VK ++ P V + F+HV+
Sbjct: 255 IKIAVNPRMTVEDGHTIAKAVKERLMLEPNVHDVFVHVN 293
>gb|AAC63637.1| (AC005309) unknown protein [Arabidopsis thaliana]
Length = 483
Score = 153 bits (383), Expect = 2e-36
Identities = 96/298 (32%), Positives = 155/298 (51%), Gaps = 20/298 (6%)
Query: 2 EEELKPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKP 61
EE K + + + L V K + G S A+I+D HS+SD V S V V + + P
Sbjct: 71 EEGEKIFRLGLTADIGLSVAKALTGYLCGSTAIIADAAHSVSDVVLSGVALVSYRAANVP 130
Query: 62 PDESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMV-------- 113
D+ HP+GH +FE L A + +L+ IA +L L + P ++
Sbjct: 131 KDKEHPYGHGKFETLGALGISAMLLATGSGIAWHALD--LLSIALSAAPEVIHSGHHHGI 188
Query: 114 ---------IVALLSILVKELMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFG 164
V + SI +KE + G++ + +++A+A+HHRSD +S++V LVG G
Sbjct: 189 DMNHPILALTVTIASISIKEGLYWITKRAGEKQGSGLMMANAWHHRSDAISSLVALVGVG 248
Query: 165 LQRLGIWFGDALAGFVVALFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVL 224
LG+ F D LAG VV+ + G++ +++ L A P + + I + V+GV
Sbjct: 249 GSILGVNFLDPLAGLVVSTMIVNAGLKTGHQSILELVDAAIPAQQLEPIRQTILQVEGVK 308
Query: 225 GVHDLRAHYVGTKLHVELHIEVSPETSLKKAHDISEEVKRKVE-SLPEVSEAFIHVDI 281
G H LR G+ L++++HI V P +S+ AH++ E V+R++ + PEVSE FIH+ I
Sbjct: 309 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIGI 366
>gi|11499965 conserved hypothetical transmembrane protein [Archaeoglobus
fulgidus] >gi|7483269|pir||D69548 conserved hypothetical
transmembrane protein AF2388 - Archaeoglobus fulgidus
>gi|2650701|gb|AAB91271.1| (AE001111) conserved
hypothetical transmembrane protein [Archaeoglobus
fulgidus]
Length = 384
Score = 152 bits (381), Expect = 4e-36
Identities = 85/276 (30%), Positives = 150/276 (53%), Gaps = 5/276 (1%)
Query: 1 MEEELKPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKK 60
M+E L+ +S N VL +K+ G+F S ALI+DG+HSL D + SV+ ++G+K++++
Sbjct: 1 MDEALRAGKISAFANVVLTALKVAAGIFANSTALIADGVHSLVDVLGSVLVWLGIKVAER 60
Query: 61 PPDESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSI 120
P D SHP+GH + E L +G ++I+ + I +++ +++ V VA+LS
Sbjct: 61 PADASHPYGHFKAESLAEMAVGLIIILSSLLIMHEAISSVINASVPTFELYAVAVAMLSA 120
Query: 121 LVKELMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFV 180
+ EL+ RY + VG + + +IA+ H R DVLS++ V+VGF G W+ D++
Sbjct: 121 VANELLARYKIRVGLKTRSTSLIAEGKHSRVDVLSSLAVVVGFFFVYFGYWWADSVVAIA 180
Query: 181 VALFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHV 240
+++ + ++G +L +++ L R E+ K+ V +DGV V + V
Sbjct: 181 ISVVILQIGGSVLKNSIDVLMDRVDE-ELALKVRSVIEKIDGVKSVDFIGTRGTMKSRVV 239
Query: 241 ELHIEV----SPETSLKKAHDISEEVKRKVESLPEV 272
E+H+ V ET +ISEE+K ++ + V
Sbjct: 240 EVHLTVDAGMDAETIAALQREISEEIKERIPGVVNV 275
>gb|AAG20064.1| (AE005086) cation efflux system protein (zinc/cadmium); Cef
[Halobacterium sp. NRC-1]
Length = 299
Score = 146 bits (366), Expect = 2e-34
Identities = 96/262 (36%), Positives = 142/262 (53%), Gaps = 17/262 (6%)
Query: 31 SIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEPLFAFFMGELLIVVAY 90
S+A+ S+ I+SL+D S+V G+ L+ +PPD HP GH R EP + +VVA
Sbjct: 34 SLAVGSEAINSLADVAYSLVVLGGLYLTTQPPDFKHPHGHERIEPFVS-------LVVAL 86
Query: 91 EIARDSLGRMLSRETIRL-------TPTMVIVALL--SILVKELMTRYALSVGKRLDNKI 141
+ G +L + T + TP + V +L + + K + RY L V +
Sbjct: 87 GVLAAG-GAVLWQATTTVAAGDYGPTPGLPAVGVLVGTAVAKYALYRYVLGVAADHRSPA 145
Query: 142 IIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALFVGKVGVEILLENVNYLT 201
+ A A +R+D+L+ LVG G D LA FVVA + G EI+ +NVNYL
Sbjct: 146 LRATALDNRNDILTASAALVGVLGSATGYPVLDPLAAFVVAAGILHTGYEIVRDNVNYLV 205
Query: 202 GRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELHIEVSPETSLKKAHDISEE 261
G APP ++ ++I A V G HD+ AHYVG ++ V LH+EV E +L +AHDI +
Sbjct: 206 GAAPPADLREQILGRALDNPDVEGAHDVVAHYVGPEIDVSLHVEVEGEMTLHEAHDIETD 265
Query: 262 VKRKVESLPEVSEAFIHVDIRE 283
+ +ES+PEV + F+HVD +E
Sbjct: 266 LILDLESIPEVDDVFVHVDPKE 287
>pir||F72323 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981410|gb|AAD35957.1|AE001753_13 (AE001753)
conserved hypothetical protein [Thermotoga maritima]
Length = 306
Score = 146 bits (365), Expect = 3e-34
Identities = 87/284 (30%), Positives = 158/284 (55%), Gaps = 5/284 (1%)
Query: 2 EEELKPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKP 61
EE K + I+GNTVL V+K++VGL S A+++DGI + +D TS+V + ++S KP
Sbjct: 5 EEIKKGAWIGILGNTVLAVLKILVGLLTGSYAILADGIDTSTDIFTSLVILLSSRISGKP 64
Query: 62 PDESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRE-TIRLTPTMVIVALLSI 120
PDE+HP+GH R E + + + ++ + +S+ R++ +E ++ LT T IV +S+
Sbjct: 65 PDETHPYGHERAETIASKIISFVMFYAGASLLVESVKRLVKQEFSLELTLTAFIVVGISV 124
Query: 121 LVKELMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGF-GLQRLGIWFGDALAGF 179
K + Y LS+GKRL + I+DA + R+D++ + VL G ++ G W+ D+L
Sbjct: 125 AGKTFLFLYKLSLGKRLKSSATISDALNMRNDIMISGTVLAGMVAMKTFGWWWLDSLLAI 184
Query: 180 VVALFVGKVGVEILLENVNYLTG--RAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTK 237
V++ + + + E L + ++ I V V H +R VGTK
Sbjct: 185 FVSIMILRTSFSVFYEAAYELMDGMKRTELDMYDDIFAVLERFPNVHNPHRVRIRRVGTK 244
Query: 238 LHVELHIEVSPETSLKKAHDISEEVKRK-VESLPEVSEAFIHVD 280
+E+ IEV + S+K AH+++ +++++ ++ ++ + IHV+
Sbjct: 245 YFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVE 288
>dbj|BAB04431.1| (AP001509) cation efflux system [Bacillus halodurans]
Length = 307
Score = 145 bits (362), Expect = 6e-34
Identities = 84/279 (30%), Positives = 147/279 (52%), Gaps = 8/279 (2%)
Query: 10 VSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFG 69
V II N +L ++K V+G + S ALI+D HS SD S+ G++ +KKPPD HP+G
Sbjct: 14 VGIIVNGLLALMKGVIGWLSGSRALIADAAHSASDVAGSIAVLAGLRTAKKPPDADHPYG 73
Query: 70 HSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRY 129
H + E + + LLIVV EIA S + ++ + SI++KE++ +Y
Sbjct: 74 HGKAENVATIIVAILLIVVGVEIAISSTKVFVGEMPSAPKGIALVAIIASIIIKEVLFQY 133
Query: 130 ALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFG-------DALAGFVVA 182
+ K++++ ++A+A+HHRSD LS+I +G +G F D +AG +V+
Sbjct: 134 KYRLAKKINSSALLAEAWHHRSDALSSIAAFIGVFGAMVGQHFNYPILVYLDPVAGLIVS 193
Query: 183 LFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVEL 242
L V K+G + E+ + + + E K ++GV + +L A G + V++
Sbjct: 194 LIVIKIGFSLAKESSSIMMEQVLDPEKTKPFIRTVSKIEGVKRIDELLARTHGHYIVVDI 253
Query: 243 HIEVSPETSLKKAHDISEEVKRK-VESLPEVSEAFIHVD 280
+ V P S+++ H IS+ VK+ + + + F+H++
Sbjct: 254 KVGVDPNLSVEEGHRISKRVKKALLANHNHIKRVFVHIN 292
>pir||C69781 cation efflux system homolog ydfM - Bacillus subtilis
>gi|1881354|dbj|BAA19381.1| (AB001488) FUNCTION UNKNOWN,
SIMILAR PRODUCT IN SYNECHOCYSTIS AND E. COLI. [Bacillus
subtilis] >gi|2632847|emb|CAB12354.1| (Z99106) similar
to cation efflux system [Bacillus subtilis]
Length = 297
Score = 144 bits (360), Expect = 1e-33
Identities = 78/283 (27%), Positives = 158/283 (55%), Gaps = 9/283 (3%)
Query: 6 KPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDES 65
K ++++I N +L K+ GL S A+ +DGIHS +D V S+ + +S KPPD+
Sbjct: 11 KVALIALIANLILMAGKVFFGLVGDSEAVFADGIHSAADVVASIAVLAVIGISNKPPDQD 70
Query: 66 HPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKEL 125
HPFGH + E + +G +L++V+ I +++ + ++ + + AL+S + KE+
Sbjct: 71 HPFGHGKAEVISEAIVGIILVIVSVYILIEAILSFVKGPSVP-QYSALFAALISYVAKEI 129
Query: 126 MTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLG-------IWFGDALAG 178
+ RY++ GK+ ++K IIA AY H+ D+++++ +G L +G + + DA+A
Sbjct: 130 LYRYSIKQGKKWNSKAIIAIAYDHKGDIVASLAAFIGVLLAIIGNSRGWSYLLYADAIAS 189
Query: 179 FVVALFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKL 238
+VA + K+ +E++ +V L ++ E+ ++ + V D V + +RA G
Sbjct: 190 AIVAYLIFKISMELIRPSVGVLMEKSVDPELIEEYKAVIFQCDQVKRIDRIRAREHGHYK 249
Query: 239 HVELHIEVSPETSLKKAHDISEEVKRKVE-SLPEVSEAFIHVD 280
+++ + + + ++K+ HDI+ E++ +++ +V E IHV+
Sbjct: 250 LLDVRLSLDHDLTIKQGHDIAREIRNEIKRQFSDVEEVLIHVN 292
>pir||C69023 conserved hypothetical protein MTH1172 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622279|gb|AAB85661.1| (AE000886) possible cation
transporter [Methanobacterium thermoautotrophicum]
Length = 407
Score = 138 bits (344), Expect = 8e-32
Identities = 83/264 (31%), Positives = 144/264 (54%), Gaps = 2/264 (0%)
Query: 11 SIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGH 70
S+I N +L V+K G + +IALI+D IHS +D +S F+G+KLS++ PDE P+G+
Sbjct: 19 SVIINMILVVIKGFTGYLSGNIALIADAIHSFADVFSSAAVFIGLKLSQRKPDELFPYGY 78
Query: 71 SRFEPLFAFFMGELLIVVAYEIARDSLGRMLS-RETIRLTPTMVIVALLSILVKELMTRY 129
R E L + + L+I+ EI DS+ +L+ + + + V+L+SI V + Y
Sbjct: 79 HRIETLVSLLVSVLIIITGLEITWDSIIYILNPASEVSMATASLAVSLISIGVSYAIAFY 138
Query: 130 ALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALFVGKVG 189
+ VG+R+ + ++ D H DV+S+I+V +G + +G+ +AG ++++ + +G
Sbjct: 139 KVRVGRRIGSTALLNDGKHSYVDVISSILVFLGILGEYMGLHGFQGIAGVIISVVIIYIG 198
Query: 190 VEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELHIEVSPE 249
+ + +V L + + I++ SV GV GVHD+R G L ELHIE+
Sbjct: 199 IRLAKYDVLTLLDACIDRDSIEVIKKTVLSVPGVEGVHDIRIRRSGPYLFGELHIELERG 258
Query: 250 TSLKKAHDISEEVKRKV-ESLPEV 272
+ K I ++ +V E LP +
Sbjct: 259 LPVDKIEGIISQINSRVKEVLPSI 282
>sp|P46348|YEAB_BACSU HYPOTHETICAL 31.8 KD PROTEIN IN GABP-GUAA INTERGENIC REGION (ORFX)
>gi|7447652|pir||B69791 cation efflux system membrane
protein homolog yeaB - Bacillus subtilis
>gi|1708640|gb|AAB62307.1| (U51115) YeaB [Bacillus
subtilis] >gi|2632945|emb|CAB12451.1| (Z99107) alternate
gene name: ydxT~similar to cation efflux system membrane
protein [Bacillus subtilis]
Length = 290
Score = 132 bits (330), Expect = 3e-30
Identities = 71/274 (25%), Positives = 153/274 (54%), Gaps = 5/274 (1%)
Query: 9 IVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPF 68
+VSI VL +KL++G S AL +DG+++ +D + SV +G+++S+KPPDE HP+
Sbjct: 15 LVSIAAYLVLSAIKLIIGYLFHSEALTADGLNNTTDIIASVAVLIGLRISQKPPDEDHPY 74
Query: 69 GHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVI--VALLSILVKELM 126
GH R E + + +++VV ++ + + S + + TP M+ A ++ ++
Sbjct: 75 GHFRAETIASLIASFIMMVVGLQVLFSAGESIFSAK--QETPDMIAAWTAAGGAVLMLIV 132
Query: 127 TRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALFVG 186
RY + K++ ++ ++A A ++SD +I +G + + + D + FV+ L +
Sbjct: 133 YRYNKRLAKKVKSQALLAAAADNKSDAFVSIGTFIGIVAAQFHLAWIDTVTAFVIGLLIC 192
Query: 187 KVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELHIEV 246
K +I E+ + LT ++ ++ + GV + D++A Y+G+ +HV++ +EV
Sbjct: 193 KTAWDIFKESSHSLTDGFDIKDI-SAYKQTIEKISGVSRLKDIKARYLGSTVHVDVVVEV 251
Query: 247 SPETSLKKAHDISEEVKRKVESLPEVSEAFIHVD 280
S + ++ ++HDI+ E++R+++ + + +H++
Sbjct: 252 SADLNITESHDIANEIERRMKEEHAIDYSHVHME 285
>gb|AAC44640.1| (U31756) OrfX [Bacillus subtilis]
Length = 276
Score = 129 bits (321), Expect = 4e-29
Identities = 70/261 (26%), Positives = 147/261 (55%), Gaps = 5/261 (1%)
Query: 9 IVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPF 68
+VSI VL +KL++G S AL +DG+++ +D + SV +G+++S+KPPDE HP+
Sbjct: 15 LVSIAAYLVLSAIKLIIGYLFHSEALTADGLNNTTDIIASVAVLIGLRISQKPPDEDHPY 74
Query: 69 GHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVI--VALLSILVKELM 126
GH R E + + +++VV ++ + + S + + TP M+ A ++ ++
Sbjct: 75 GHFRAETIASLIASFIMMVVGLQVLFSAGESIFSAK--QETPDMIAAWTAAGGAVLMLIV 132
Query: 127 TRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALFVG 186
RY + K++ ++ ++A A ++SD +I +G + + + D + FV+ L +
Sbjct: 133 YRYNKRLAKKVKSQALLAAAADNKSDAFVSIGTFIGIVAAQFHLAWIDTVTAFVIGLLIC 192
Query: 187 KVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELHIEV 246
K +I E+ + LT ++ ++ + GV + D++A Y+G+ +HV++ +EV
Sbjct: 193 KTAWDIFKESSHSLTDGFDIKDI-SAYKQTIEKISGVSRLKDIKARYLGSTVHVDVVVEV 251
Query: 247 SPETSLKKAHDISEEVKRKVE 267
S + ++ ++HDI+ E++R+++
Sbjct: 252 SADLNITESHDIANEIERRMK 272
>pir||D83150 probable transporter PA3963 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9950152|gb|AAG07350.1|AE004814_5
(AE004814) probable transporter [Pseudomonas aeruginosa]
Length = 298
Score = 124 bits (309), Expect = 1e-27
Identities = 77/266 (28%), Positives = 135/266 (49%)
Query: 18 LGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEPLF 77
L + K + + S++L++ SL D+ S++ + V S +P D+ H +GH + E L
Sbjct: 25 LVIGKAIAWWLSGSVSLLAGLTDSLLDSAASLLNLLAVHYSLRPADDDHRYGHGKAEALA 84
Query: 78 AFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRYALSVGKRL 137
+ A +A ++ ++ + + + V LLS+L+ L+ + V +R
Sbjct: 85 GLAQAMFIGASAVLVAIQAVEQLRDPQPLGAATWGIAVMLLSLLLTALLLAFQTHVIRRT 144
Query: 138 DNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALFVGKVGVEILLENV 197
+ I AD+ H+RSD+L +LV L R G D L G +AL++ ++I E+V
Sbjct: 145 GSTAIRADSLHYRSDLLLNASILVALLLARYGWPQSDGLFGLGIALYILWSALQIARESV 204
Query: 198 NYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELHIEVSPETSLKKAHD 257
+ L R P ++ +++ E+A SV GVLG HD+R G V+LH+E+ E SL AH
Sbjct: 205 SILMDRELPTDISERMRELACSVPGVLGAHDVRTRISGNHWFVQLHLELPGELSLSVAHA 264
Query: 258 ISEEVKRKVESLPEVSEAFIHVDIRE 283
+++ ++ +E IH D +E
Sbjct: 265 LTDRAVLAIKREYPKAEVLIHADPQE 290
>pir||G72363 cation efflux system protein - Thermotoga maritima (strain MSB8)
>gi|4981052|gb|AAD35623.1|AE001729_3 (AE001729) cation
efflux system protein [Thermotoga maritima]
Length = 284
Score = 117 bits (291), Expect = 1e-25
Identities = 79/265 (29%), Positives = 148/265 (55%), Gaps = 9/265 (3%)
Query: 6 KPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDES 65
K L+ SI N ++ + ++V GL + S+AL+ D +H+ SDT++ + F+ +K+S+KP ++
Sbjct: 3 KKLLFSIWLNAIITLSEVVGGLISGSLALLGDSLHNFSDTMSLLGSFIAMKISEKPKNKK 62
Query: 66 HPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKEL 125
+ FG+ R E + AF + VV+ + +++ R+LS T+ T +++V+ + +
Sbjct: 63 YTFGYRRSEIIVAFLNSVSIFVVSTLVVIEAVKRLLSPATVH-TSVLLLVSSIGLAANFF 121
Query: 126 MTRYALSVGKRLDNKIIIADAYHHR-SDVLSTIVVLVGFGLQRL-GIWFGDALAGFVVAL 183
+ K N + AY H +D LS+I+V++G R+ I++ D + FV+AL
Sbjct: 122 SVILLHTHSKESMN---VRSAYLHLIADTLSSILVVLGAVFMRVWKIYWLDPVLAFVIAL 178
Query: 184 FVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTK-LHVEL 242
++ K EI+ E++ L +P + +KI+E ++GV H A VG K +H E
Sbjct: 179 YMFKEAYEIVKESLEILMEASPNLDF-EKIKEEIEKIEGVRNAHHFHAWRVGEKEIHFEC 237
Query: 243 HIEVSPETSLKKAHDISEEVKRKVE 267
H+EV LK A I +E++++++
Sbjct: 238 HVEVD-NMELKDAQKIIDEIEKRLK 261
>pir||B69772 conserved hypothetical protein ydbO - Bacillus subtilis
>gi|1881264|dbj|BAA19291.1| (AB001488) FUNCTION UNKNOWN,
SIMILAR PRODUCT IN B. SUBTILIS AND E. COLI. [Bacillus
subtilis] >gi|2632754|emb|CAB12261.1| (Z99106) similar
to hypothetical proteins [Bacillus subtilis]
Length = 290
Score = 115 bits (284), Expect = 8e-25
Identities = 72/280 (25%), Positives = 147/280 (51%), Gaps = 11/280 (3%)
Query: 6 KPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDES 65
K +++I +L VVKLV+G+ S AL +DG+++ +D V SV +G+++S++P D
Sbjct: 12 KGALLNIFAYVILAVVKLVIGILYHSEALRADGLNNGTDIVASVAVLIGLRISQRPADSD 71
Query: 66 HPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVI--VALLSILVK 123
HP+GH R E + + +++ V E+ G+ ++ T TP ++ AL S +
Sbjct: 72 HPYGHYRAETISSLVASFIMMAVGIEVLIGG-GKAIAGGTTE-TPNLIAAWTALGSAVFM 129
Query: 124 ELMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVAL 183
+ Y + + + ++A A RSD + +G +L + + D + F++ +
Sbjct: 130 YGIYLYNKRLAASIKSSALMAAAKDSRSDAFVSAGAFIGVFSSQLKLPWVDPVTAFIIGI 189
Query: 184 FVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVH---DLRAHYVGTKLHV 240
+ K +I + + LT K +E ++V + VH D++A Y+G+ +H+
Sbjct: 190 IICKTAWDIFKDASHSLTDGFH----LKDLEPYKQTVGRIENVHRLKDVKARYLGSTVHI 245
Query: 241 ELHIEVSPETSLKKAHDISEEVKRKVESLPEVSEAFIHVD 280
E+ I V P+ ++++ H +++EV+ K++ +V+ +HV+
Sbjct: 246 EMVITVDPKLTVEEGHGVADEVEDKIKHEHDVTHVHVHVE 285
>pir||H82045 conserved hypothetical protein VC2690 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657285|gb|AAF95831.1|
(AE004334) conserved hypothetical protein [Vibrio
cholerae]
Length = 302
Score = 114 bits (282), Expect = 1e-24
Identities = 71/265 (26%), Positives = 130/265 (48%)
Query: 16 TVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEP 75
++L VVK+ S++L++ I S+ D SVV + ++ + +P D H FGH + E
Sbjct: 22 SLLLVVKVAAWWVTGSVSLLASLIDSVLDIAASVVNLIVLRFALQPADHEHAFGHGKAES 81
Query: 76 LFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRYALSVGK 135
L A + A + + + R + + V+ ++ILV + + V +
Sbjct: 82 LAALAQAMFISGSACFLILNGVDRFFRPHELNAPELGIYVSAIAILVTFGLVLFQRYVVR 141
Query: 136 RLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALFVGKVGVEILLE 195
+ ++ I AD+ H++SD+L ++V GL G+ DA+ + L++ +++ +
Sbjct: 142 KTGSQAIAADSLHYQSDLLMNAAIMVALGLSWWGLGQADAIFAIGIGLYILFSAFKMVHD 201
Query: 196 NVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELHIEVSPETSLKKA 255
V L R P E ++I + SV GV+G+H LR G ++LH+E+ SL +A
Sbjct: 202 AVQTLLDRKLPDEELEQIHAICLSVAGVIGMHQLRTRMSGPVRFIQLHLELDDNISLLEA 261
Query: 256 HDISEEVKRKVESLPEVSEAFIHVD 280
H IS+ V+ K+ ++ IH D
Sbjct: 262 HQISDRVEDKLREHFVGADVLIHQD 286
>pir||G70477 hypothetical protein aq_2073 - Aquifex aeolicus
>gi|2984294|gb|AAC07818.1| (AE000771) putative protein
[Aquifex aeolicus]
Length = 385
Score = 112 bits (277), Expect = 5e-24
Identities = 78/273 (28%), Positives = 139/273 (50%), Gaps = 5/273 (1%)
Query: 9 IVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPF 68
+VS N ++KLV GL S++LI D IHSLSD S++ F+ +K S + E P+
Sbjct: 8 LVSFGFNIFQSLIKLVGGLLTGSLSLIGDAIHSLSDATASLIAFLSIKFS-EIKSERFPY 66
Query: 69 GHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTR 128
G + E + A + L+ A+EI + +L ++ L P + V +LS+++ ++
Sbjct: 67 GLYKLENIGAIVIAFFLLFTAWEIIQRALKGEININFENL-PIGIGVTVLSLVLSLTLSF 125
Query: 129 YALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALFVGKV 188
GK+L++ +IAD+YH +D S+ +VL+ GI + VAL +
Sbjct: 126 LERRAGKKLNSPTLIADSYHTLTDAFSSFLVLISLSSYYFGINI-ERYVAVAVALIIVYT 184
Query: 189 GVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELHIEVSP 248
E+L E + + + E +KI+ + S V V L G +L ++ I ++
Sbjct: 185 AFELLKEQIGAILDISADKETVEKIKRIILSFPEVSEVKRLLVRNAGGRLFIDAVITINT 244
Query: 249 ETSLKKAHDISEEVKRKV-ESLPEVSEAFIHVD 280
+ + K+H I++E++RK+ + +P V FIH +
Sbjct: 245 DDFI-KSHAIADEIERKIMKEIPNVDMVFIHYE 276
>sp|Q9ZCC5|P34_RICPR PROTEIN P34 >gi|7467934|pir||A71645 protein p34 (p34) RP832 -
Rickettsia prowazekii >gi|3861358|emb|CAA15257.1|
(AJ235273) PROTEIN P34 (p34) [Rickettsia prowazekii]
Length = 300
Score = 112 bits (277), Expect = 5e-24
Identities = 65/272 (23%), Positives = 131/272 (47%), Gaps = 3/272 (1%)
Query: 10 VSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFG 69
+S+ ++ ++KL + S ++++ I S+ D +S + V ++ + +PPD H FG
Sbjct: 15 LSVTTALIILIIKLYAWVVTSSQSILASLIDSMLDITSSFINLVALRFALQPPDHYHRFG 74
Query: 70 HSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRY 129
H + + L F A+ + S+ + + I+ L + + ++ Y
Sbjct: 75 HEKMQDLTIFSQSIFFFASAFFVGFASVKSLFIKTKPENISDGTIIMYLCMFLTIILVLY 134
Query: 130 ALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALFVGKVG 189
V K+ ++I+ AD H+ +D+L+ ++V++ L WF D L G V++L++
Sbjct: 135 QTYVIKKTGSEIVKADKLHYFTDLLTNVIVIISINLSDY-FWFVDPLFGVVISLYIFHSS 193
Query: 190 VEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELHIEVSPE 249
+ + L P + +KI + + GV G+H+++ Y K ++ H+E+
Sbjct: 194 YSLFKKAFKNLVDHELPEQDRQKIISIVNNHSGVKGMHEMKTRYAAQKAFIQCHLEMDGN 253
Query: 250 TSLKKAHDISEEVKRKV-ESLPEVSEAFIHVD 280
SL AH IS+E+ ++ + PE +E IH D
Sbjct: 254 ISLYSAHKISDEIAFEILQKFPE-AEIIIHQD 284
>pir||C81369 probable transmembrane transport protein Cj0948c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968385|emb|CAB73205.1| (AL139076) putative
transmembrane transport protein [Campylobacter jejuni]
Length = 295
Score = 107 bits (265), Expect = 1e-22
Identities = 76/285 (26%), Positives = 144/285 (49%), Gaps = 7/285 (2%)
Query: 1 MEEELKPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKK 60
M + K +V+ + VL +VK +VGL + S+A++S I SL D S F+ +K S +
Sbjct: 1 MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMDFAISAFNFLALKKSSQ 60
Query: 61 PPDESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSI 120
+E++ FG S+ E L G ++ V I +S+ ++ +E I+ + + V + ++
Sbjct: 61 KANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYYKEEIKDLNSSIYVMIFAL 120
Query: 121 LVKELMTRYALSVGKRLDNKIIIADAYHHRSDVLS---TIVVLVGFGLQRLGIWFGDALA 177
++ + + V K+ + II +DA H+++D L+ T+ LV L I DA+
Sbjct: 121 IMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTLGALVLIYFTNLHII--DAIF 178
Query: 178 GFVVALFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTK 237
G V++L+ +I+ + + +L A P E KI + + ++ H+L+ +
Sbjct: 179 GIVISLYTAFSAFKIIKKALAFLMDEALPKEQVDKICTLISNNPEIISYHELKTRKTPSC 238
Query: 238 LHVELHIEVSPETSLKKAHDISEEVKRKVESL--PEVSEAFIHVD 280
++ +H+ P SL AH IS+E++ V + E + IH+D
Sbjct: 239 NYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKWDIQIHLD 283
>pir||E75421 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6458976|gb|AAF10804.1|AE001971_4 (AE001971)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 317
Score = 106 bits (263), Expect = 2e-22
Identities = 78/282 (27%), Positives = 140/282 (48%), Gaps = 11/282 (3%)
Query: 7 PLIVSIIGNTVLGVVKLVVGLFNL------SIALISDGIHSLSDTVTSVVGFVGVKLSKK 60
P+ V+ IG +GV LV+GL L S+AL SD + S+ + V++ + + ++ +
Sbjct: 26 PVRVAAIG---VGVALLVLGLKFLAYRLTGSVALFSDALESIINVVSAGGALLALWVAAR 82
Query: 61 PPDESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSI 120
P D SHP+GH++ E L A G L+++ A I R ++ + + + V + +
Sbjct: 83 PADASHPYGHTKAEYLSAVVEGVLIVLAALSILRVAVPELSHPRAVDAPWLGLGVNMGAS 142
Query: 121 LVKELMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIW-FGDALAGF 179
++ + L +G+ + +IAD H SDV++++ VL+G L RL W D L
Sbjct: 143 VINLVWANVLLRIGQASRSPALIADGKHVMSDVVTSVGVLIGVVLARLTGWHILDPLLAL 202
Query: 180 VVALFVGKVGVEILLENV-NYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKL 238
+VAL + G +L +V + P+ + ++ G L +HDLR + G
Sbjct: 203 LVALNILWSGWGLLSSSVGGLMDAGVDPHTDAQLRRVISEEATGALEIHDLRTRHSGQVT 262
Query: 239 HVELHIEVSPETSLKKAHDISEEVKRKVESLPEVSEAFIHVD 280
VE H+ V E +++ AH I + ++ V+ + + IHV+
Sbjct: 263 FVEFHLVVPSEMTVRDAHTICDRLEDAVQGVIAGANVTIHVE 304
>sp|P21559|P34_RICRI PROTEIN P34 >gi|97211|pir||S13095 P34 protein - Rickettsia
rickettsii >gi|46397|emb|CAA39546.1| (X56068) P34
[Rickettsia rickettsii]
Length = 301
Score = 105 bits (259), Expect = 7e-22
Identities = 63/272 (23%), Positives = 129/272 (47%), Gaps = 3/272 (1%)
Query: 10 VSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFG 69
+S+ ++ +KL + S ++++ I S+ D +S + + ++ + +PPD H FG
Sbjct: 16 LSVTTALIILSIKLYAWVVTDSQSILAALIDSMLDITSSFINLIALRFALQPPDHHHRFG 75
Query: 70 HSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRY 129
+ + + L F A+ + S+ + + V + I + ++ Y
Sbjct: 76 YEKLQDLTIFSQSIFFFASAFFVGFSSVKSLFEKTKPENISDGTTVMYVCIFLTIILVFY 135
Query: 130 ALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALFVGKVG 189
V K+ ++I+ AD H+ +D+L+ ++V++ L WF D L G V++L++
Sbjct: 136 QTYVIKKTGSEIVKADKLHYFTDLLTNVIVIISINLSDY-FWFVDPLFGVVISLYIFHSS 194
Query: 190 VEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELHIEVSPE 249
+ + L P + +KI + + G G+H+++ Y G K ++ H+E+
Sbjct: 195 YSLFKKAFKNLVDHELPEQDRQKIISIVNNHLGAKGMHEMKTRYAGQKAFIQCHLEMDGN 254
Query: 250 TSLKKAHDISEEVKRKV-ESLPEVSEAFIHVD 280
SL AH IS+E+ ++ + PE +E IH D
Sbjct: 255 MSLYNAHKISDEIAFEILQEFPE-AEIIIHQD 285
>pir||H70941 hypothetical protein Rv2025c - Mycobacterium tuberculosis (strain
H37RV) >gi|2896762|emb|CAA17239.1| (AL021899)
hypothetical protein Rv2025c [Mycobacterium
tuberculosis]
Length = 332
Score = 105 bits (259), Expect = 7e-22
Identities = 63/275 (22%), Positives = 135/275 (48%), Gaps = 2/275 (0%)
Query: 5 LKPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDE 64
++ + +S++ + ++++V+ + + S+AL +D IH+ +D +T+V ++ L KP
Sbjct: 41 IRTVKISLLVLGLTALIQIVIVVMSGSVALAADTIHNFADALTAVPLWIAFALGAKPATR 100
Query: 65 SHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKE 124
+ +G R E L F+ ++ + A +++ R++ + I + + L+ + E
Sbjct: 101 RYTYGFGRVEDLAGSFVVAMITMSAIIAGYEAIARLIHPQQIEHVGWVALAGLVGFIGNE 160
Query: 125 LMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALF 184
+ Y + VG R+ + +IAD H R+D +++ VL G LG D + G ++
Sbjct: 161 WVALYRIRVGHRIGSAALIADGLHARTDGFTSLAVLCSAGGVALGFPLADPIVGLLITAA 220
Query: 185 VGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELHI 244
+ V + L P V E+ + GV V +R ++G +LH + +
Sbjct: 221 ILAVLRTAARDVFRRLLDGVDPAMV-DAAEQALAARPGVQAVRSVRMRWIGHRLHADAEL 279
Query: 245 EVSPETSLKKAHDISEEVKRKV-ESLPEVSEAFIH 278
+V P L +AH I+ + + ++ ++P+++ A IH
Sbjct: 280 DVDPALDLAQAHRIAHDAEHELTHTVPKLTTALIH 314
>sp|P32159|YIIP_ECOLI HYPOTHETICAL 32.9 KD PROTEIN IN CPXA-PFKA INTERGENIC REGION
>gi|541122|pir||S40858 hypothetical 32.9K protein
(cpxA-pfkA intergenic region) - Escherichia coli
>gi|305018|gb|AAB03047.1| (L19201) similar to Rickettsia
rickettsii protein P34 [Escherichia coli]
>gi|1790349|gb|AAC76897.1| (AE000466) putative transport
system permease protein [Escherichia coli K12]
Length = 300
Score = 104 bits (258), Expect = 9e-22
Identities = 65/265 (24%), Positives = 131/265 (48%)
Query: 16 TVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEP 75
++L ++K+ + S+++++ + SL D S+ + V+ S +P D++H FGH + E
Sbjct: 21 SLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAES 80
Query: 76 LFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRYALSVGK 135
L A + A + + ++S + VIV +++++ ++ + V +
Sbjct: 81 LAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWVVR 140
Query: 136 RLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALFVGKVGVEILLE 195
R ++ + AD H++SDV+ +L+ GL G DAL + +++ + + E
Sbjct: 141 RTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYE 200
Query: 196 NVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELHIEVSPETSLKKA 255
V L RA P E ++I ++ S GV G HDLR G +++H+E+ L +A
Sbjct: 201 AVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQA 260
Query: 256 HDISEEVKRKVESLPEVSEAFIHVD 280
H ++++V++ + S+ IH D
Sbjct: 261 HMVADQVEQAILRRFPGSDVIIHQD 285
>dbj|BAA99362.1| (AP002526) ESTs AU032649(S13048),D47505(S13048) correspond to a
region of the predicted gene.~Similar to Arabidopsis
thaliana chromosome II BAC F12L6; unknown protein.
(AC004218) [Oryza sativa] >gi|9558472|dbj|BAB03393.1|
(AP002538) ESTs AU032649(S13048),D47505(S13048)
correspond to a region of the predicted gene.~Similar to
Arabidopsis thaliana chromosome II BAC F12L6; unknown
protein. (AC004218) [Oryza sativa]
Length = 391
Score = 104 bits (258), Expect = 9e-22
Identities = 74/288 (25%), Positives = 140/288 (47%), Gaps = 9/288 (3%)
Query: 2 EEELKPLI--------VSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFV 53
EEEL+ + +S I N +L + K++ + +LS+A+I+ + SL D ++ + +
Sbjct: 91 EEELRQMAKGERLAINLSNIINLILFIGKVLASVESLSMAVIASTLDSLLDLLSGFILWF 150
Query: 54 GVKLSKKPPDESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMV 113
KKP S+P G R +P+ ++ + +++ +S ++++ E
Sbjct: 151 TAHAMKKPNKYSYPIGKRRMQPVGIIVFASVMGTLGFQVLIESGRQLITNEHQVFDHRKE 210
Query: 114 IVALLSILVKELMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFG 173
+ + S+ ++ + + + N+I+ A A H DV++ V LV L W+
Sbjct: 211 LWMIGSMSSVAVVKFFLMLYCRSFKNEIVRAYAQDHFFDVITNSVGLVSALLAVRYKWWM 270
Query: 174 DALAGFVVALFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVA-RSVDGVLGVHDLRAH 232
D + ++A++ ++ENV L GR+ P E K+ + + + + +RA+
Sbjct: 271 DPVGAILIAVYTITTWARTVVENVGTLIGRSAPAEYLTKLTYLIWNHHEEIRHIDTVRAY 330
Query: 233 YVGTKLHVELHIEVSPETSLKKAHDISEEVKRKVESLPEVSEAFIHVD 280
GT VE+ I + + L AHDI E ++ K+E LPEV AF+HVD
Sbjct: 331 TFGTHYFVEVDIVLPGDMPLSHAHDIGESLQEKLEQLPEVERAFVHVD 378
>gb|AAD34683.1|AC006341_11 (AC006341) >F3O9.11 [Arabidopsis thaliana]
Length = 398
Score = 102 bits (253), Expect = 4e-21
Identities = 75/292 (25%), Positives = 140/292 (47%), Gaps = 17/292 (5%)
Query: 2 EEELKPLI--------VSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFV 53
EEE+K L +S N VL V K+ + + S+A+I+ + SL D ++ + +
Sbjct: 99 EEEMKKLAKSERLAVHISNATNLVLFVAKVYASMESRSMAVIASTLDSLLDLLSGFILWF 158
Query: 54 GVKLSKKPPDESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPT-- 111
+KP +P G R +P+ ++ + ++ +S +++++ I + T
Sbjct: 159 TANAMRKPNQFHYPIGKRRMQPVGIIVFASVMATLGLQVLLESGRQLVAKSGIHMNSTEE 218
Query: 112 --MVIVALLSILVKELMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLG 169
M+ + + +VK L+ Y + N+I+ A A H DV++ + L L
Sbjct: 219 KWMIGIMVSVTIVKFLLMLYC----RGFQNEIVRAYAQDHLFDVVTNSIGLATAVLAVKF 274
Query: 170 IWFGDALAGFVVALFVGKVGVEILLENVNYLTGR-APPYEVCKKIEEVARSVDGVLGVHD 228
W+ D ++AL+ +LENV+ L GR APP + K + + + +
Sbjct: 275 YWWIDPTGAILIALYTIATWARTVLENVHSLIGRSAPPDFLAKLTFLIWNHHEQIKHIDT 334
Query: 229 LRAHYVGTKLHVELHIEVSPETSLKKAHDISEEVKRKVESLPEVSEAFIHVD 280
+RA+ G+ VE+ I + + L++AH+I E ++ K+E L EV AF+H+D
Sbjct: 335 VRAYTFGSHYFVEVDIVLPEDMRLQEAHNIGETLQEKLEQLAEVERAFVHID 386
>pir||T00555 hypothetical protein F12L6.11 - Arabidopsis thaliana
>gi|3355474|gb|AAC27836.1| (AC004218) unknown protein
[Arabidopsis thaliana]
Length = 394
Score = 102 bits (251), Expect = 6e-21
Identities = 77/285 (27%), Positives = 140/285 (49%), Gaps = 10/285 (3%)
Query: 2 EEELKPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKP 61
+ E + +S I N +L K+ + + S+A+I+ + SL D ++ + + + P
Sbjct: 100 KSETLAIRISNIANMLLFAAKVYASVTSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTP 159
Query: 62 PDESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLS-RETIRLTP---TMVIVAL 117
+P G R +PL ++ + +I +SL MLS + LT + V+ +
Sbjct: 160 NPYQYPIGKKRMQPLGILVFASVMATLGLQIILESLRTMLSSHKEFNLTKEQESWVVGIM 219
Query: 118 LSI-LVKELMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDAL 176
LS+ LVK L+ Y S N+I+ A A H DV++ I+ L+ L ++ D +
Sbjct: 220 LSVTLVKLLLVLYCRS----FTNEIVKAYAQDHFFDVITNIIGLIAVILANYIDYWIDPV 275
Query: 177 AGFVVALFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVA-RSVDGVLGVHDLRAHYVG 235
++AL+ + +LENVN L G++ E +K+ + + + +RA+ G
Sbjct: 276 GAIILALYTIRTWSMTVLENVNSLVGKSARPEYLQKLTYLCWNHHKAIRHIDTVRAYTFG 335
Query: 236 TKLHVELHIEVSPETSLKKAHDISEEVKRKVESLPEVSEAFIHVD 280
+ VE+ I + + L+ AHDI E ++ K+E L E+ AF+H+D
Sbjct: 336 SHYFVEVDIVLPADMPLQVAHDIGESLQEKLELLEEIERAFVHLD 380
>gb|AAD30224.1|AC007202_6 (AC007202) EST gb|AA404917 comes from this gene. [Arabidopsis
thaliana]
Length = 434
Score = 102 bits (251), Expect = 6e-21
Identities = 77/292 (26%), Positives = 138/292 (46%), Gaps = 17/292 (5%)
Query: 2 EEELKPLI--------VSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFV 53
EEELK L +S N VL V K+ + + S+A+I+ + SL D ++ + +
Sbjct: 102 EEELKKLAKSERLAVHISNAANLVLFVAKVYASVESRSMAVIASTLDSLLDLLSGFILWF 161
Query: 54 GVKLSKKPPDESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPT-- 111
+ P + +P G R +P+ ++ + ++ +S ++S+ ++ T
Sbjct: 162 TANAMRTPNNFRYPIGKRRMQPVGIIVFASVMATLGLQVILESTRLLVSKNGSHMSSTEE 221
Query: 112 --MVIVALLSILVKELMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLG 169
M+ + + +VK L+ Y S N+I+ A A H DV++ V L L
Sbjct: 222 KWMIGIMASATVVKFLLMLYCRS----FQNEIVRAYAQDHLFDVITNSVGLATAVLAVKF 277
Query: 170 IWFGDALAGFVVALFVGKVGVEILLENVNYLTGR-APPYEVCKKIEEVARSVDGVLGVHD 228
W+ D ++AL+ +LENV+ L GR APP + K + + + +
Sbjct: 278 YWWIDPSGAILIALYTISTWARTVLENVHSLIGRSAPPDFLAKLTFLIWNHHEKIKHIDT 337
Query: 229 LRAHYVGTKLHVELHIEVSPETSLKKAHDISEEVKRKVESLPEVSEAFIHVD 280
+RA+ G+ VE+ I + + L +AH+I E ++ K+E L EV AF+H+D
Sbjct: 338 VRAYTFGSHYFVEVDIVLPEDMRLHEAHNIGETLQEKLEQLSEVERAFVHID 389
>pir||C69612 cation-efflux system membrane protein czcD - Bacillus subtilis
>gi|1934656|gb|AAB80907.1| (U93876) cation transport
protein YrdO [Bacillus subtilis]
>gi|2635110|emb|CAB14606.1| (Z99117) cation-efflux
system membrane protein [Bacillus subtilis]
Length = 311
Score = 94.4 bits (231), Expect = 1e-18
Identities = 63/264 (23%), Positives = 131/264 (48%), Gaps = 3/264 (1%)
Query: 6 KPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDES 65
K L++S I T +++ + G S+AL+SD H LSD+++ +V + L++K + +
Sbjct: 12 KVLLISFIMITGYMIIEAIGGFLTNSLALLSDAGHMLSDSISLMVALIAFTLAEKKANHN 71
Query: 66 HPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKEL 125
FG+ RFE L A G LI+++ I +++ R + + T M+ ++++ ++V L
Sbjct: 72 KTFGYKRFEILAAVINGAALILISLYIIYEAIERFSNPPKV-ATTGMLTISIIGLVVNLL 130
Query: 126 MTRYALSVGKRLDNKIIIADAYHHRSDVLSTI-VVLVGFGLQRLGIWFGDALAGFVVALF 184
+ +S G +N I H SD+L ++ +L + G + D LA +VA+
Sbjct: 131 VAWIMMSGGDTKNNLNIRGAYLHVISDMLGSVGAILAAILIIFFGWGWADPLASIIVAIL 190
Query: 185 VGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLH-VELH 243
V + G + ++++ L P I +G+ +HDL + + L+ + H
Sbjct: 191 VLRSGYNVTKDSIHILMEGTPENIDVSDIIRTIEGTEGIQNIHDLHIWSITSGLNALSCH 250
Query: 244 IEVSPETSLKKAHDISEEVKRKVE 267
V + ++ ++ +I +++ ++E
Sbjct: 251 AVVDDQLTISESENILRKIEHELE 274
>dbj|BAA19587.1| (D87026) membrane protein [Bacillus stearothermophilus]
Length = 317
Score = 91.7 bits (224), Expect = 9e-18
Identities = 69/279 (24%), Positives = 130/279 (45%), Gaps = 7/279 (2%)
Query: 6 KPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDES 65
K L ++++ VV+++ G+ + S+AL+SD H SD + + V + ++ +PP+
Sbjct: 22 KALWITLVLTVFFTVVEIIGGVLSNSLALLSDSAHMASDVLALGLSMVALYMATRPPNRR 81
Query: 66 HPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKEL 125
FG RFE + +F G L V+A I + + R L E I+ M+ +A + ++V
Sbjct: 82 FTFGFLRFEIIASFLNGLTLAVIAVWILWEGIERFLHPEPIQFR-LMLGIAAIGLIVNLT 140
Query: 126 MTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIW-FGDALAGFVVALF 184
+T K DN + + +H D++S+I V++ L W D + V+A
Sbjct: 141 LTIVLSRSTKEEDNLNVQSALWHFIGDLISSIGVIISALLIYFTGWTIFDPIISLVIAAI 200
Query: 185 VGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGT-----KLH 239
+ G +I+ E+ L P ++I R+++GV VHD+ + T H
Sbjct: 201 IFTGGAKIMRESYLILMEAVPDEFDLEQIRADIRNIEGVEDVHDMHLWAISTDHYSLSAH 260
Query: 240 VELHIEVSPETSLKKAHDISEEVKRKVESLPEVSEAFIH 278
V ++ + P + +++ +E S +V A +H
Sbjct: 261 VFVNEHIQPLCVILAVNEMLKEKYGIEHSTIQVEHAILH 299
>gi|11499720 conserved hypothetical transmembrane protein [Archaeoglobus
fulgidus] >gi|7483267|pir||A69517 conserved hypothetical
transmembrane protein AF2137 - Archaeoglobus fulgidus
>gi|2648388|gb|AAB89114.1| (AE000956) conserved
hypothetical transmembrane protein [Archaeoglobus
fulgidus]
Length = 283
Score = 87.8 bits (214), Expect = 1e-16
Identities = 62/267 (23%), Positives = 124/267 (46%), Gaps = 18/267 (6%)
Query: 21 VKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEPLFAFF 80
+KL + A+++D HS+ D ++ + + ++K D HPFGH + +
Sbjct: 14 IKLYAYFLSGFTAILADAFHSVIDITMILILLLSERYAEKEADYQHPFGHEMARNVASLA 73
Query: 81 MGELLIV-VAYEIARDSLGRML------SRETIRLTPTMVIVALLSILVKELMTRYALSV 133
+G I + +E+ ++ L ++L S + L + ++ALL I R +
Sbjct: 74 VGVGFITFMFFELMKEGLLKVLHPASGYSNVEVALGAEVAVLALLVIAALISARRSGIL- 132
Query: 134 GKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALFVGKVGVEIL 193
N+ ++ ++ + D LST+ +VG GL G D +A +A + ++
Sbjct: 133 -----NRTLLVESLN---DSLSTLAAIVGVGLVWAGYPIFDGIATIAIAFIIFYNSFRLV 184
Query: 194 LENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVG-TKLHVELHIEVSPETSL 252
+N L G +P + + +E+ ++ V GVHD+ Y G +H++LH+ V ++
Sbjct: 185 RDNARLLIGMSPSEDFYRSVEDACLEIERVKGVHDMVGVYTGENSVHLDLHVTVDGAMTI 244
Query: 253 KKAHDISEEVKRKVESL-PEVSEAFIH 278
++A +S E+ + + PEV +H
Sbjct: 245 EEADKLSVEIAEAIMAKHPEVKHISVH 271
>gb|AAB53029.1| (U62055) CzcD [Bacillus subtilis]
Length = 295
Score = 87.8 bits (214), Expect = 1e-16
Identities = 57/250 (22%), Positives = 124/250 (48%), Gaps = 3/250 (1%)
Query: 20 VVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEPLFAF 79
+++ + G S+AL+SD H LSD+++ +V + L++K + + FG+ RFE L A
Sbjct: 10 IIEAIGGFLTNSLALLSDAGHMLSDSISLMVALIAFTLAEKKANHNKTFGYKRFEILAAV 69
Query: 80 FMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRYALSVGKRLDN 139
G LI+++ I +++ R + + T M+ ++++ ++V L+ +S G +N
Sbjct: 70 INGAALILISLYIIYEAIERFSNPPKV-ATTGMLTISIIGLVVNLLVAWIMMSGGDTKNN 128
Query: 140 KIIIADAYHHRSDVLSTI-VVLVGFGLQRLGIWFGDALAGFVVALFVGKVGVEILLENVN 198
I H SD+L ++ +L + G + + LA +VA+ V + G + ++++
Sbjct: 129 LNIRGAYLHVISDMLGSVGAILAAILIIFFGWGWANPLASIIVAILVLRSGYNVTKDSIH 188
Query: 199 YLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLH-VELHIEVSPETSLKKAHD 257
L P I +G+ +HDL + + L+ + H V + ++ ++ +
Sbjct: 189 ILMEGTPENIDVSDIIRTIEGTEGIQNIHDLHIWSITSGLNALSCHAVVDDQLTISESEN 248
Query: 258 ISEEVKRKVE 267
I +++ ++E
Sbjct: 249 ILRKIEHELE 258
>pir||H71078 probable cation efflux system protein czcD - Pyrococcus horikoshii
>gi|3257307|dbj|BAA29990.1| (AP000004) 295aa long
hypothetical cation efflux system protein czcD
[Pyrococcus horikoshii]
Length = 295
Score = 87.4 bits (213), Expect = 2e-16
Identities = 68/265 (25%), Positives = 134/265 (49%), Gaps = 9/265 (3%)
Query: 6 KPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDES 65
+ +++S N + + +++ G+ + S+AL+SD +H+ SD++ + +K+ ++ +E
Sbjct: 9 RKMMLSFSLNLGITLAEVIGGIISGSLALLSDSLHNFSDSMGIFASYFAIKIGERKKNEK 68
Query: 66 HPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKEL 125
FG+ R E L AF +L+ V+ + ++ R S E I+ M+ VAL+ +
Sbjct: 69 FTFGYKRAEILVAFANSAVLVGVSLFLIFEAYKRFKSPEPIK-GSLMLFVALIGLFAN-- 125
Query: 126 MTRYALSVGKRLDNKIIIADAYHHR-SDVLSTI-VVLVGFGLQRLGIWFGDALAGFVVAL 183
+ + + + I AY H SD LS+I VVL G + + +++ D L +++L
Sbjct: 126 -LASVILLHEHAHESMNIRSAYLHLVSDSLSSIAVVLGGIAITKWNVFWIDPLITVLISL 184
Query: 184 FVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVG-TKLHVEL 242
++ IL E++ L AP + +KI+E S+ V H A VG ++H E
Sbjct: 185 YILHESYGILKESIEVLMEAAPNLDF-QKIKEEIESIPKVRNAHHFHAWRVGENEIHFEC 243
Query: 243 HIEVSPETSLKKAHDISEEVKRKVE 267
H+E + + L +A + + + K++
Sbjct: 244 HVE-TEDMLLSEAQKLIDAIADKLK 267
>pir||T31797 hypothetical protein R02F11.3 - Caenorhabditis elegans
>gi|2315350|gb|AAB65899.1| (AF016439) R02F11.3 gene
product [Caenorhabditis elegans]
Length = 509
Score = 86.6 bits (211), Expect = 3e-16
Identities = 77/325 (23%), Positives = 137/325 (41%), Gaps = 58/325 (17%)
Query: 10 VSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFG 69
+++ N +L + K+V + + S+++IS + S+ D + +V + ++ KK +P G
Sbjct: 175 ITLAVNFLLMIAKVVASVLSGSMSIISSMVDSVVDITSGLVISLSERMIKKRDPYLYPRG 234
Query: 70 HSRFEPLFAFFM----------------------------GELLIVVAYEIARDSLGRML 101
+R EPL + G LLI + L L
Sbjct: 235 RTRLEPLSLILISVIMGMASIQLIIASVRGIHDGIQFHLYGALLIFEPISVFELILSDWL 294
Query: 102 SRETIRL-------------------------TPTMVIVALLSILVKELMTRYALSVGKR 136
E I L T T V++ + ++LVK + + KR
Sbjct: 295 ETELISLAVLSFGGNLQYIRPQRIGEEPKLNVTITSVVIMVSTVLVKLSLYLFC----KR 350
Query: 137 LDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALFVGKVGVEILLEN 196
+ A HR+D +S V L+ L ++ D VV++++ V+ E+
Sbjct: 351 YKEPSVNVLAMDHRNDCISNTVALICAWLGTKYSYYFDPAGAIVVSMYILYTWVQTGREH 410
Query: 197 VNYLTGRAPPYEVCKKIEEVARSVDGVLG-VHDLRAHYVGTKLHVELHIEVSPETSLKKA 255
+ L+G+ E +I +V D + + + ++ G+K VE+HI + LK++
Sbjct: 411 LAKLSGKTAEPEFINRIIKVCLDHDARISHIDTVYVYHFGSKFLVEVHIVLDENMILKES 470
Query: 256 HDISEEVKRKVESLPEVSEAFIHVD 280
HDISE ++ +ESLPEV AF+H D
Sbjct: 471 HDISETLQSNIESLPEVERAFVHTD 495
>sp|P74068|YC63_SYNY3 HYPOTHETICAL 33.3 KD PROTEIN SLL1263 >gi|7429310|pir||S75583
hypothetical protein sll1263 - Synechocystis sp. (strain
PCC 6803) >gi|1653229|dbj|BAA18144.1| (D90912)
hypothetical protein [Synechocystis sp.]
Length = 310
Score = 86.6 bits (211), Expect = 3e-16
Identities = 66/279 (23%), Positives = 127/279 (44%), Gaps = 5/279 (1%)
Query: 6 KPLIVSIIGNTVLGVVKLVVGLFNL--SIALISDGIHSLSDTVTSVVGFVGVKLSKKPPD 63
+P V IG L + L +G + + S+ L+SD + S + +++V F + L+ P D
Sbjct: 7 RPYAVLSIG-AALATMGLKLGAYAITGSVGLLSDALESTVNLASAIVAFWALSLAATPAD 65
Query: 64 ESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVK 123
HPFGHS+ E + G + V A I ++ R+LS + + +A+ + +
Sbjct: 66 SEHPFGHSKAEYFSSGLEGAFIFVAALGIGYSAVERLLSPRPLDQNALGIALAIAATALN 125
Query: 124 ELMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIW-FGDALAGFVVA 182
+ GKRL++ + AD+ H +DV +++ V+V L + W + D L V
Sbjct: 126 GTVAWILWRAGKRLNSIALRADSQHLMTDVWTSVGVVVAVALIFVTGWEWLDPLIALGVG 185
Query: 183 LFVGKVGVEILLENVNYLTGRA-PPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVE 241
V G +L E ++ L ++ PP ++ D + H L+ G++ +
Sbjct: 186 FNVLWTGTHLLRETISSLMDQSLPPAQLQAITSCFLPYEDQGVRFHLLQTRQAGSQSFIS 245
Query: 242 LHIEVSPETSLKKAHDISEEVKRKVESLPEVSEAFIHVD 280
H+ V ++++ HD+ E ++ + S H++
Sbjct: 246 FHVLVPGHWTVQRGHDLCEAIETAIAERITGSRVTTHLE 284
>pir||T40838 probable transporter - fission yeast (Schizosaccharomyces pombe)
>gi|3130046|emb|CAA18991.1| (AL023518) putative
transporter [Schizosaccharomyces pombe]
Length = 397
Score = 86.2 bits (210), Expect = 4e-16
Identities = 75/303 (24%), Positives = 143/303 (46%), Gaps = 39/303 (12%)
Query: 4 ELKPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPD 63
ELK + + N L K + G+ S L++D H L DT++ +V +K+ K P
Sbjct: 73 ELKLAWLGLYSNIGLAAAKGIGGVALQSSILVADAAHQLGDTLSDLVTLATLKICSKKPT 132
Query: 64 ESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLS-------------------RE 104
+ +P G ++E + F + LL+ V+ IA SL R+ + +
Sbjct: 133 QKYPAGFGKWETIGTFTVSGLLVAVSVGIAHSSLSRLYTILFPYAGSEHTHIGHSHNPSQ 192
Query: 105 TIRLTPTMVIVALL-SILVKELMTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLVGF 163
+ P M + + S+++KE + R +V ++ D+ I++A+A+HHR+D L+ +V L+
Sbjct: 193 LLFEHPFMALGLIFGSVVLKEWLFRKTRTVAQKTDSNILLANAWHHRADALTGMVSLLAL 252
Query: 164 -GLQRLGIWFGDALAGFVVALFVGKVGVEILLENVNYLTGRAPPYEV-------CKKIEE 215
G L + D G +V++ V G + L RAP E+ K E+
Sbjct: 253 SGTYFLNAPWLDPFFGCLVSIVVFSAGFNSSKKAFLQLLDRAPSEELRIAVTDALLKGEK 312
Query: 216 VARSVDGVLGVHDLRAHYVGTKLHVELHIEVSPETSLKKAHDISEEVKRKV-ESLPEVSE 274
+ + +LG AH +HV I V P + +++ +++++V++ V +++P +S
Sbjct: 313 LPYKIVTILG----NAH----AMHV--IISVPPSFTSQQSSELAQKVEKTVLDAIPALSS 362
Query: 275 AFI 277
+
Sbjct: 363 CIV 365
>sp|P13512|CZCD_ALCEU COBALT-ZINC-CADMIUM RESISTANCE PROTEIN CZCD (CATION EFFLUX SYSTEM
PROTEIN CZCD) >gi|1403126|emb|CAA67085.1| (X98451) no
histidine kinase, member of cation-diffusion-facilitator
(CDF) family [Ralstonia sp. CH34]
Length = 316
Score = 84.3 bits (205), Expect = 2e-15
Identities = 70/264 (26%), Positives = 129/264 (48%), Gaps = 7/264 (2%)
Query: 20 VVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEPLFAF 79
+ ++V G+ S+ALISD H L+DTV + + ++K+P D+ FG+ RFE L A
Sbjct: 29 IAEVVGGVMTKSLALISDAAHMLTDTVALAIALAAIAIAKRPADKKRTFGYYRFEILAAA 88
Query: 80 FMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRYALSVGKRLDN 139
F LL VA I ++ R+ S I T M +VA+L +++ L++ LS G+ +
Sbjct: 89 FNALLLFGVAIYILYEAYLRLKSPPQIEST-GMFVVAVLGLII-NLISMRMLSSGQ--SS 144
Query: 140 KIIIADAY-HHRSDVLSTIVVLVGFGLQRLGIW-FGDALAGFVVALFVGKVGVEILLENV 197
+ + AY SD+L ++ V+ G + R W + D+ ++ L+V +L ++
Sbjct: 145 SLNVKGAYLEVWSDLLGSVGVIAGAIIIRFTGWAWVDSAIAVLIGLWVLPRTWILLKSSL 204
Query: 198 NYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELHIEVSPETSLKKAHD 257
N L P ++E+ + GV HDL + T L + V +T++ +
Sbjct: 205 NVLLEGVPDDVDLAEVEKQILATPGVKSFHDLHI-WALTSGKASLTVHVVNDTAVNPEME 263
Query: 258 ISEEVKRKVESLPEVSEAFIHVDI 281
+ E+K+ + +++ I ++
Sbjct: 264 VLPELKQMLADKFDITHVTIQFEL 287
>sp|P94178|CZCD_ALCSP CATION EFFLUX SYSTEM PROTEIN CZCD >gi|2120970|pir||JC4701 cadmium,
zinc, cobalt divalent cation resistant determinant D -
Alcaligenes sp >gi|1785481|dbj|BAA11062.1| (D67044) CzcD
[Alcaligenes sp.]
Length = 316
Score = 84.3 bits (205), Expect = 2e-15
Identities = 70/264 (26%), Positives = 129/264 (48%), Gaps = 7/264 (2%)
Query: 20 VVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEPLFAF 79
+ ++V G+ S+ALISD H L+DTV + + ++K+P D+ FG+ RFE L A
Sbjct: 29 IAEVVGGVMTKSLALISDAAHMLTDTVALAIALAAIAIAKRPADKKRTFGYYRFEILAAA 88
Query: 80 FMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRYALSVGKRLDN 139
F LL VA I ++ R+ S I T M +VA+L +++ L++ LS G+ +
Sbjct: 89 FNALLLFGVAIYILYEAYLRLKSPPQIEST-GMFVVAVLGLII-NLISMRMLSSGQ--SS 144
Query: 140 KIIIADAY-HHRSDVLSTIVVLVGFGLQRLGIW-FGDALAGFVVALFVGKVGVEILLENV 197
+ + AY SD+L ++ V+ G + R W + D+ ++ L+V +L ++
Sbjct: 145 SLNVKGAYLEVWSDLLGSVGVIAGAIIIRFTGWAWVDSAIAVLIGLWVLPRTWFLLKSSL 204
Query: 198 NYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELHIEVSPETSLKKAHD 257
N L P ++E+ + GV HDL + T L + V +T++ +
Sbjct: 205 NVLLEGVPDDVDLAEVEKQILATPGVKSFHDLHI-WALTSGKASLTVHVVNDTAVNPEME 263
Query: 258 ISEEVKRKVESLPEVSEAFIHVDI 281
+ E+K+ + +++ I ++
Sbjct: 264 VLPELKQMLADKFDITHVTIQFEL 287
>sp|P75757|YBGR_ECOLI HYPOTHETICAL 34.7 KDA PROTEIN IN PNUC-AROG INTERGENIC REGION
>gi|7429309|pir||H64810 ybgR protein - Escherichia coli
>gi|1786966|gb|AAC73839.1| (AE000177) putative transport
system permease protein [Escherichia coli K12]
>gi|4062324|dbj|BAA35414.1| (D90714) Cation efflux
system protein CzcD. [Escherichia coli]
Length = 313
Score = 81.1 bits (197), Expect = 1e-14
Identities = 60/234 (25%), Positives = 112/234 (47%), Gaps = 10/234 (4%)
Query: 20 VVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEPLFAF 79
+V++V G + S+AL++D H L+DT + + V+ S++PP H FG R L AF
Sbjct: 33 LVEVVGGFLSGSLALLADAGHMLTDTAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAF 92
Query: 80 FMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRYALSVGKRLDN 139
L+V+ I +++ R + + M++ ++ L+ +++ + L G N
Sbjct: 93 VNAIALVVITILIVWEAIERFRTPRPVE--GGMMMAIAVAGLLANILSFWLLHHGSEEKN 150
Query: 140 KIIIADAYHHRSDVLSTIVVLVGFGLQRLGIWFG----DALAGFVVALFVGKVGVEILLE 195
+ A A H D+L ++ ++ + IW G D + +V+L V + +L +
Sbjct: 151 LNVRAAALHVLGDLLGSVGAIIA---ALIIIWTGWTPADPILSILVSLLVLRSAWRLLKD 207
Query: 196 NVNYLTGRAP-PYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELHIEVSP 248
+VN L AP ++ + + R + V VH + VG K + LH++V P
Sbjct: 208 SVNELLEGAPVSLDIAELKRRMCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIP 261
>pir||E70392 cation efflux system (czcD-like) - Aquifex aeolicus
>gi|2983552|gb|AAC07126.1| (AE000721) cation efflux
system (czcD-like) [Aquifex aeolicus]
Length = 308
Score = 80.8 bits (196), Expect = 2e-14
Identities = 72/267 (26%), Positives = 130/267 (47%), Gaps = 13/267 (4%)
Query: 2 EEELKPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKP 61
E+ LK L S + + ++ + GL S+AL+SD H L+D V+ + V L+ K
Sbjct: 4 EKSLKVLAFSFLLIFLFAFIEFLGGLLTNSLALLSDAGHMLTDAVSLSIALVAQYLALKV 63
Query: 62 PDESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSIL 121
+ +G R E L A G L+ + I +++ R + E ++ P M+ +A ++
Sbjct: 64 KTKRTTYGLYRLEVLAALVNGVFLLGLIGYIILEAIHRFENPEPVK--PQMIYIAFAGLI 121
Query: 122 VKELMTRYALSVGKRLDNKIIIADA-YHHRSDVLSTI-VVLVGFGLQRLGIWFGDALAGF 179
V L+ Y L K + I I A H +D L ++ ++ G + + D +
Sbjct: 122 V-NLVVGYILL--KHSEENINIKSALLHVATDTLGSVAAIIAGIAIVFWKFYLADPILSV 178
Query: 180 VVALFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYV--GTK 237
VAL + ++ E VN L AP + +++E+ ++ GV GVHDL + GT+
Sbjct: 179 AVALLILPSAYSVIKETVNVLLEVAPSHINTEELEKELLNLQGVKGVHDLHVWSITPGTE 238
Query: 238 LHVELHIEVSPETSLKKAHDISEEVKR 264
+ + +H+ V +TS+ +DI +EV++
Sbjct: 239 V-LTVHVVVE-DTSI--CNDILKEVEK 261
>pir||T16470 hypothetical protein F56C9.3 - Caenorhabditis elegans
>gi|488189|gb|AAB08712.1| (U00063) weakly similar to R.
rickettsii protein P34 [Caenorhabditis elegans]
Length = 435
Score = 77.6 bits (188), Expect = 1e-13
Identities = 62/294 (21%), Positives = 130/294 (44%), Gaps = 23/294 (7%)
Query: 10 VSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFG 69
+++ N VL + K+ + S+++IS + S+ D + V + ++ +K +P G
Sbjct: 128 ITLFVNLVLMLAKIFASYLSGSMSIISSMVDSVVDLTSGAVLSISSRMIRKRDPYQYPRG 187
Query: 70 HSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLT-PTMVIVALLSILVKELMTR 128
+R EPL + ++ + + ++ S+ R+ + P V ++I+ + +
Sbjct: 188 RTRVEPLSLILISVIMGMASVQLIISSVRRIHDAAVYGIKDPINVSWPTIAIMGSTIAVK 247
Query: 129 YALSV--GKRLDNKIIIADAYHHRSDVLSTIVVLVGFGL-------------------QR 167
L + K N I + HR+D +S + L L ++
Sbjct: 248 LTLFIICQKYKSNSSIKVLSLDHRNDCISNSMALACAWLAFYYTVKDGDEKSGAVVFEKQ 307
Query: 168 LGIWFGDALAGFVVALFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDG-VLGV 226
+++ D +V++++ + + L+G++ E+ +I D + +
Sbjct: 308 FDLYYLDPAGAILVSVYILYTWIRTGYAHFVMLSGKSAHPELINRIVHQCIEHDPRITHI 367
Query: 227 HDLRAHYVGTKLHVELHIEVSPETSLKKAHDISEEVKRKVESLPEVSEAFIHVD 280
+ ++ GTK VE+HI + SLK HDI+E ++ +ESLPE+ AF+H D
Sbjct: 368 DTVYVYHYGTKFLVEVHIVLDQNMSLKVTHDIAESLQTGIESLPEIERAFVHCD 421
>pir||E81321 probable cation transport protein Cj1163c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968596|emb|CAB73417.1| (AL139077) putative cation
transport protein [Campylobacter jejuni]
Length = 316
Score = 76.9 bits (186), Expect = 3e-13
Identities = 63/263 (23%), Positives = 130/263 (48%), Gaps = 7/263 (2%)
Query: 6 KPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDES 65
K L +S++ + +V+ + + + S+AL+SD +H SD + F+ + +K D
Sbjct: 39 KILKISLLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQ 98
Query: 66 HPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKEL 125
FG+ R E L AF +I+ A I +++ + ++ + I TM+IVA+L LV +
Sbjct: 99 KTFGYFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEID-AKTMIIVAILGFLVNGI 157
Query: 126 MTRYALSVGKRLDNKIIIADAYHHRSDVLSTIVVLV-GFGLQRLGIWFGDALAGFVVALF 184
+ G L+N + + H SD+L ++ V++ G + I + D + V+++
Sbjct: 158 -NALMMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSDIVYIDTILAIVLSIL 216
Query: 185 VGKVGVEILLENVNYLTGRAP-PYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHVELH 243
+ + + +L ++ N L +P E +++ + SVD V+ +H L +H
Sbjct: 217 LLRWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLH--ITQITNKMLVASMH 274
Query: 244 IEVSPETSLKKAHDISEEVKRKV 266
++V +LK+ +S+++ K+
Sbjct: 275 LKVR-VCNLKEFEKLSQDLSHKL 296
>pir||C83595 probable cation efflux system protein PA0397 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9946251|gb|AAG03786.1|AE004477_3 (AE004477) probable
cation efflux system protein [Pseudomonas aeruginosa]
Length = 299
Score = 76.9 bits (186), Expect = 3e-13
Identities = 67/264 (25%), Positives = 127/264 (47%), Gaps = 9/264 (3%)
Query: 20 VVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEPLFAF 79
V ++V G+ S+ALISD H L+D V + + ++++P ++ +G+ RFE L A
Sbjct: 29 VAEVVGGILTGSLALISDAAHMLTDAVALAIALAAINIARRPTNDRLTYGYHRFEILAAA 88
Query: 80 FMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVK-ELMTRYALSVGKRLD 138
F LL VA+ I + R+ I+ + M+++A+L +LV M A + G L+
Sbjct: 89 FNAFLLFGVAFYILYAAYERLNQPAEIQ-SVGMLVIAVLGLLVNLASMRLLAPAQGNSLN 147
Query: 139 NKIIIADAYHHRSDVLSTIVVLVGFGLQRLGIW-FGDALAGFVVALFVGKVGVEILLENV 197
K + + SD+L ++ V+V + R W + D+L ++ +V +L E++
Sbjct: 148 VKGAYLEVW---SDMLGSLGVIVAAIVIRFTGWAWVDSLVAVLIGFWVLPRTWILLRESL 204
Query: 198 NYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGT-KLHVELHIEVSPETSLKKAH 256
+ L P ++ E + GV G+HDL + + K+ + H+ P +L A
Sbjct: 205 HVLLEGVPKEIQLAELREALLGIPGVTGLHDLHVWSITSGKISLTSHLVYDP--ALVDAE 262
Query: 257 DISEEVKRKVESLPEVSEAFIHVD 280
+ VK + E+ + + ++
Sbjct: 263 ALLGTVKALLHDRYEIEHSTLQLE 286
>pir||T46028 hypothetical protein T10K17.270 - Arabidopsis thaliana
>gi|6729549|emb|CAB67634.1| (AL132977) putative protein
[Arabidopsis thaliana]
Length = 390
Score = 75.3 bits (182), Expect = 8e-13
Identities = 65/253 (25%), Positives = 115/253 (44%), Gaps = 18/253 (7%)
Query: 31 SIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEPLFAFFMGELLIVVAY 90
SIA+ + + SL D + + + K +P G R +P+ ++ +A
Sbjct: 134 SIAIAASTLDSLLDLMAGGILWFTHLSMKNVNIYKYPIGKLRVQPVGIIIFAAVMATLAE 193
Query: 91 EIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRYALSVG-KRLDNKIIIADAYHH 149
++ +S E + ++ L SI++ + L + K N I+ A A H
Sbjct: 194 QL--------ISNEPSEKMNHVQLIWLYSIMLSATAIKLVLWIYCKSSRNHIVRAYAKDH 245
Query: 150 RSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALFVGKVGVEILLENVNYLTGRAPPYEV 209
DV++ ++ LV L W+ D ++A++ ++EN APP EV
Sbjct: 246 HFDVVTNVLGLVAAVLANAFYWWLDPTGAILLAIYTIVNWSGTVMENA------APP-EV 298
Query: 210 CKKIEEVA--RSVDGVLGVHDLRAHYVGTKLHVELHIEVSPETSLKKAHDISEEVKRKVE 267
+K+ + + D + V +RA+ G VE+ IE+ + LK+AH I E ++ K+E
Sbjct: 299 LQKLTYLVMRQGGDNIKHVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHAIGESLQIKLE 358
Query: 268 SLPEVSEAFIHVD 280
LPEV AF+H+D
Sbjct: 359 ELPEVERAFVHLD 371
>pir||T16640 hypothetical protein PDB1.1 - Caenorhabditis elegans
>gi|1072207|gb|AAA81718.1| (U40944) similar to C.
elegans protein F56C9.3 [Caenorhabditis elegans]
Length = 238
Score = 74.5 bits (180), Expect = 1e-12
Identities = 59/237 (24%), Positives = 110/237 (45%), Gaps = 27/237 (11%)
Query: 64 ESHPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETI-----RLTPTMVIVALL 118
E +P G + EPL +G +++ + + L R T+ +L P + + L+
Sbjct: 4 EQYPVGMRKLEPLTVVIVGMIMLFANFIV--------LERATVQTIEDKLDPRVDLTTLI 55
Query: 119 SILVKELMTRYALSVGKRLDNK---IIIA---------DAYHHRSDVLSTIVVLVGFGLQ 166
+L T++ L + R+ +++A D+ R+D L+ IV L+G +
Sbjct: 56 -VLCTGTATKFCLFMICRVRKSAACLVLAIDQVNFSDSDSAFTRNDCLTNIVALLGAWIG 114
Query: 167 RLGIWFGDALAGFVVALFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGV 226
+ + D L F+V+ F+ + E++ YL GR E +I ++ + D +
Sbjct: 115 QNWWKYADPLGAFMVSGFIIVTWFLTIREHIPYLIGRRADQEFINRITNISINHDQRIKA 174
Query: 227 HD-LRAHYVGTKLHVELHIEVSPETSLKKAHDISEEVKRKVESLPEVSEAFIHVDIR 282
D + ++ G K VE+H L+ AHD++E ++ K+E LP V AF+H D +
Sbjct: 175 LDTVHVYHFGEKFLVEVHAVFDEPAPLQMAHDVAESLQVKLEKLPFVERAFVHCDYK 231
>pir||T44365 cation-efflux system membrane protein homolog [imported] -
Staphylococcus aureus >gi|4126672|dbj|BAA36686.1|
(AB016431) czcD [Staphylococcus aureus]
Length = 325
Score = 74.5 bits (180), Expect = 1e-12
Identities = 56/260 (21%), Positives = 116/260 (44%), Gaps = 3/260 (1%)
Query: 6 KPLIVSIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDES 65
K L +S + + ++++ GL S+AL+SDGIH SDT + V V ++K +
Sbjct: 20 KVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTT 79
Query: 66 HPFGHSRFEPLFAFFMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKEL 125
FG+ RFE L A F G L V++ I +++ R ++ + M+I++++ ++V +
Sbjct: 80 KTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQ-SKEMLIISIIGLIVNIV 138
Query: 126 MTRYALSVGKRLDNKIIIADAYHHRSDVLSTI-VVLVGFGLQRLGIWFGDALAGFVVALF 184
+ + G N + H D+L ++ + + G D +A +V++
Sbjct: 139 VAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVI 198
Query: 185 VGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLH-VELH 243
+ K I ++N L P ++ + + VHD + ++ + H
Sbjct: 199 ILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCH 258
Query: 244 IEVSPETSLKKAHDISEEVK 263
+ V ++K+ + E ++
Sbjct: 259 VVVDHTLTMKECELLLENIE 278
>gb|AAF26917.1|AF210843_14 (AF210843) putative transport protein [Sorangium cellulosum]
Length = 305
Score = 74.1 bits (179), Expect = 2e-12
Identities = 72/296 (24%), Positives = 126/296 (42%), Gaps = 21/296 (7%)
Query: 1 MEEELKPLIV-SIIGNTVLGVVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSK 59
ME+E + I +I N + VK + S A++S+G+HSL DT ++ +G S
Sbjct: 1 MEKESRIAIYGAIAANVAIAAVKFIAAAVTGSSAMLSEGVHSLVDTADGLLLLLGKHRSA 60
Query: 60 KPPDESHPFGHSRFEPLFAFFMGELLIVVAYEIA-RDSLGRMLSRETIRLTPTMVIVALL 118
+PPD HPFGH + + + ++ ++ + + +L I PT V L
Sbjct: 61 RPPDAEHPFGHGKELYFWTLIVAIMIFAAGGGVSIYEGILHLLHPRQIE-DPTWNYVVLG 119
Query: 119 SILVKELMTRYALSVG--KRLDNKIIIADAYHHRSDVLSTIVV-----LVGFGLQRLGIW 171
+ V E T +S+ K+ D + +A + TIV+ L G + LG+W
Sbjct: 120 AAAVFE-GTSLIISIHEFKKKDGQGYLAAMRSSKDPTTFTIVLEDSAALAGLTIAFLGVW 178
Query: 172 FG--------DALAGFVVALFVGKVGVEILLENVNYLTGRAPPYEVCKKIEEVARSVDGV 223
G D A + L + V V + ++ L G + E+ I +A + GV
Sbjct: 179 LGHRLGNPYLDGAASIGIGLVLAAVAVFLASQSRGLLVGESADRELLAAIRALASADPGV 238
Query: 224 LGV-HDLRAHYVGTKLHVELHIEVSPETSLKKAHDISEEVKRKVES-LPEVSEAFI 277
V L H+ ++ V L IE + + E ++ ++ S P+V ++
Sbjct: 239 SAVGRPLTMHFGPHEVLVVLRIEFDAALTASGVAEAIERIETRIRSERPDVKHIYV 294
>pir||G82752 cobalt-zinc-cadmium resistance protein XF0866 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9105776|gb|AAF83676.1|AE003926_5 (AE003926)
cobalt-zinc-cadmium resistance protein [Xylella
fastidiosa]
Length = 321
Score = 74.1 bits (179), Expect = 2e-12
Identities = 55/221 (24%), Positives = 109/221 (48%), Gaps = 6/221 (2%)
Query: 20 VVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEPLFAF 79
V +++ + S+AL+SD +H +D ++ V V+LS++PPD +G++R E A
Sbjct: 51 VAEIIGAVLTRSLALLSDAVHMATDVFALMIALVAVRLSRRPPDVRRTYGYARLEAFGAL 110
Query: 80 FMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRYA-LSVGKRLD 138
G LL V I +++ R+ + + I ++ M+++A+L +++ ++ R G+ L
Sbjct: 111 VNGVLLFGVGGYILWEAVQRLRAPQEI-VSSGMLVIAVLGLVINLIVMRLLHAGRGENLS 169
Query: 139 NKIIIADAYHHRSDVLSTIVVLV-GFGLQRLGIWFGDALAGFVVALFVGKVGVEILLENV 197
K + + SD+L ++ V+V + G ++ D + ++ L+V +L E V
Sbjct: 170 MKGAYLEVW---SDMLGSVAVIVAAIVIYVTGWYWVDPVLAVLIGLWVLPRTWVLLGEAV 226
Query: 198 NYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKL 238
N L P I + GV VHD+ +G+++
Sbjct: 227 NVLLEGVPKGFELLPIRDALSHHPGVANVHDVHLWALGSRM 267
>pir||A75437 cation efflux system protein - Deinococcus radiodurans (strain R1)
>gi|6458837|gb|AAF10676.1|AE001960_4 (AE001960) cation
efflux system protein [Deinococcus radiodurans]
Length = 325
Score = 73.7 bits (178), Expect = 2e-12
Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 9/244 (3%)
Query: 20 VVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEPLFAF 79
V+++ L + S+AL+SD H L+D + +++ ++P D FG+ R E L A
Sbjct: 61 VLEVAYALSSRSLALLSDAGHMLTDVAALALALFAIRMGRRPADRQRTFGYRRTEVLAAA 120
Query: 80 FMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRYALSVGKRLDN 139
L + I +++ R R+ + + T ++V ++ LV L++ L+ G+ L+
Sbjct: 121 LNAGALFAIGLYILWEAVQRF--RQPVEVQTTSMLVVAVAGLVVNLLSARLLAGGEGLNL 178
Query: 140 KIIIADAYHHRSDVLSTIVVLVGFGLQRLGIW-FGDALAGFVVALFVGKVGVEILLENVN 198
+ + D+L ++ V+ G L RL W + D L G + L+V +L +VN
Sbjct: 179 RAAYLEVL---GDLLGSVAVIAGALLIRLTGWSWVDPLLGAGIGLWVLPRTWSLLKTSVN 235
Query: 199 YLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYV-GTKLHVELHI--EVSPETSLKKA 255
L P + R++ GV VHDL V G +++ H+ + +P L
Sbjct: 236 VLLEGVPEGLDLDALRAELRALPGVQDVHDLHVWSVTGGVVNLTAHLVSDRAPAELLPAV 295
Query: 256 HDIS 259
H+++
Sbjct: 296 HEVA 299
>pir||D33830 cation efflux system membrane protein czcD - Alcaligenes eutrophus
Length = 199
Score = 71.4 bits (172), Expect = 1e-11
Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 6/168 (3%)
Query: 20 VVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEPLFAF 79
+ ++V G+ S+ALISD H L+DTV + + ++K+P D+ FG+ RFE L A
Sbjct: 29 IAEVVGGVMTKSLALISDAAHMLTDTVALAIALAAIAIAKRPADKKRTFGYYRFEILAAA 88
Query: 80 FMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRYALSVGKRLDN 139
F LL VA I ++ R+ S I T M +VA+L +++ L++ LS G+ +
Sbjct: 89 FNALLLFGVAIYILYEAYLRLKSPPQIEST-GMFVVAVLGLII-NLISMRMLSSGQ--SS 144
Query: 140 KIIIADAY-HHRSDVLSTIVVLVGFGLQRLGIW-FGDALAGFVVALFV 185
+ + AY SD+L ++ V+ G + R W + D+ ++ L+V
Sbjct: 145 SLNVKGAYLEVWSDLLGSVGVIAGAIIIRFTGWAWVDSAIAVLIGLWV 192
>gb|AAC32485.1| (AF044951) transport protein [Staphylococcus aureus]
Length = 326
Score = 69.5 bits (167), Expect = 4e-11
Identities = 52/245 (21%), Positives = 108/245 (43%), Gaps = 3/245 (1%)
Query: 21 VKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEPLFAFF 80
++++ GL S+AL+ DGIH SDT + V V ++K + FG+ RFE L A F
Sbjct: 36 IEIIGGLLANSLALLRDGIHMSSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALF 95
Query: 81 MGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRYALSVGKRLDNK 140
G L V++ I +++ R ++ + M+I++++ ++V ++ + G N
Sbjct: 96 NGVTLFVISILIVFEAITRFFVPSEVQ-SKEMLIISIIGLIVNIVVAFFRFKGGDTSHNL 154
Query: 141 IIIADAYHHRSDVLSTI-VVLVGFGLQRLGIWFGDALAGFVVALFVGKVGVEILLENVNY 199
+ H D+L ++ + + G D +A +V++ + K I ++N
Sbjct: 155 NMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINI 214
Query: 200 LTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLH-VELHIEVSPETSLKKAHDI 258
L P ++ + VHD + ++ + H+ V ++K+ +
Sbjct: 215 LMEGTPSDVDIDEVITTITKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELL 274
Query: 259 SEEVK 263
E ++
Sbjct: 275 LENIE 279
>pir||T35276 probable efflux protein - Streptomyces coelicolor
>gi|4584498|emb|CAB40701.1| (AL049587) putative efflux
protein [Streptomyces coelicolor A3(2)]
Length = 312
Score = 68.3 bits (164), Expect = 1e-10
Identities = 61/245 (24%), Positives = 112/245 (44%), Gaps = 15/245 (6%)
Query: 20 VVKLVVGLFNLSIALISDGIHSLSDTVTSVVGFVGVKLSKKPPDESHPFGHSRFEPLFAF 79
VV++V GL S+ALI+D H +D + + + V + +PP + FG++R E L A
Sbjct: 39 VVEIVGGLVADSLALIADAAHMATDALGLGMALLAVHFASRPPSDRRTFGYARAEILAAL 98
Query: 80 FMGELLIVVAYEIARDSLGRMLSRETIRLTPTMVIVALLSILVKELMTRYALSVGKRLDN 139
LL+ V + +++ R ++ PT+V A+ LV +++ L G++
Sbjct: 99 ANCLLLLGVGGYVLYEAIDRFVTPADTAAGPTVVFGAI--GLVANMVSLSLLMRGQKESL 156
Query: 140 KI------IIADAYHHRSDVLSTIVVLVGFGLQRLGIWFGDALAGFVVALFVGKVGVEIL 193
+ + ADA + ++S +V+L G D +A ++ L + + +L
Sbjct: 157 NVRGAFLEVAADALGSLAVIVSALVILA------TGWQPADPIASLLIGLMIVPRTLRLL 210
Query: 194 LENVNYLTGRAPPYEVCKKIEEVARSVDGVLGVHDLRAHYVGTKLHV-ELHIEVSPETSL 252
E ++ L AP ++ ++DGV VHDL A + + + V H+ V E
Sbjct: 211 RETLDVLLEAAPKGVDIAEVRAHILALDGVEDVHDLHAWTITSGMPVLSAHVVVDGEALS 270
Query: 253 KKAHD 257
H+
Sbjct: 271 AIGHE 275
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.141 0.395
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97580081
Number of Sequences: 2977
Number of extensions: 3792255
Number of successful extensions: 10773
Number of sequences better than 1.0e-10: 52
Number of HSP's better than 0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 10667
Number of HSP's gapped (non-prelim): 57
length of query: 283
length of database: 189,106,746
effective HSP length: 56
effective length of query: 227
effective length of database: 155,591,474
effective search space: 35319264598
effective search space used: 35319264598
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)