BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0463 (PAB0463) DE:Hypothetical protein
         (367 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75110 hypothetical protein PAB0463 - Pyrococcus abyssi (st...   711  0.0
pir||F75103 probable purine NTPase PAB0812 - Pyrococcus abyssi (...    73  7e-12
pir||B75150 chromosome segregation protein (smc1) PAB2109 - Pyro...    69  1e-10

>pir||A75110 hypothetical protein PAB0463 - Pyrococcus abyssi (strain Orsay)
           >gi|5458105|emb|CAB49594.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 367
           
 Score =  711 bits (1816), Expect = 0.0
 Identities = 367/367 (100%), Positives = 367/367 (100%)

Query: 1   MITLGMLFELQDLWMQLSKNVPFSVQSLFWGFFAGNMVALLYYGMIGVGKVSIKAGRAIG 60
           MITLGMLFELQDLWMQLSKNVPFSVQSLFWGFFAGNMVALLYYGMIGVGKVSIKAGRAIG
Sbjct: 1   MITLGMLFELQDLWMQLSKNVPFSVQSLFWGFFAGNMVALLYYGMIGVGKVSIKAGRAIG 60

Query: 61  RAYHEVKALRKEEVRLEKEEKRELEDLKKVKKDLDEARKDVERRLEELERKLAKDVKVEE 120
           RAYHEVKALRKEEVRLEKEEKRELEDLKKVKKDLDEARKDVERRLEELERKLAKDVKVEE
Sbjct: 61  RAYHEVKALRKEEVRLEKEEKRELEDLKKVKKDLDEARKDVERRLEELERKLAKDVKVEE 120

Query: 121 LDIKEVLDYIREAQGILQDYMRKLGSFRYRLMPDRLREIGEEMTKELKEKAKDPLKKVES 180
           LDIKEVLDYIREAQGILQDYMRKLGSFRYRLMPDRLREIGEEMTKELKEKAKDPLKKVES
Sbjct: 121 LDIKEVLDYIREAQGILQDYMRKLGSFRYRLMPDRLREIGEEMTKELKEKAKDPLKKVES 180

Query: 181 QTKRVIDDIEKSLDVVRDLEKDLRKMLQDTRISLDDLRRYLEEFSRFSQDFGRIVGEYER 240
           QTKRVIDDIEKSLDVVRDLEKDLRKMLQDTRISLDDLRRYLEEFSRFSQDFGRIVGEYER
Sbjct: 181 QTKRVIDDIEKSLDVVRDLEKDLRKMLQDTRISLDDLRRYLEEFSRFSQDFGRIVGEYER 240

Query: 241 IEESLVSFERDISERTHLSEVLSEEGKLRLLKDASDNLKEVVSETRRAFAEVHRLSQTIS 300
           IEESLVSFERDISERTHLSEVLSEEGKLRLLKDASDNLKEVVSETRRAFAEVHRLSQTIS
Sbjct: 241 IEESLVSFERDISERTHLSEVLSEEGKLRLLKDASDNLKEVVSETRRAFAEVHRLSQTIS 300

Query: 301 GLRFDEAKLKRLEDYLEGLLRKESYSERLAKVTLKQIEKIKKQFIAFEDVQFVDLKKAKA 360
           GLRFDEAKLKRLEDYLEGLLRKESYSERLAKVTLKQIEKIKKQFIAFEDVQFVDLKKAKA
Sbjct: 301 GLRFDEAKLKRLEDYLEGLLRKESYSERLAKVTLKQIEKIKKQFIAFEDVQFVDLKKAKA 360

Query: 361 PLLKRYN 367
           PLLKRYN
Sbjct: 361 PLLKRYN 367


>pir||F75103 probable purine NTPase PAB0812 - Pyrococcus abyssi (strain Orsay)
           >gi|5458643|emb|CAB50131.1| (AJ248286) purine NTPase,
           putative [Pyrococcus abyssi]
           Length = 880
           
 Score = 72.6 bits (175), Expect = 7e-12
 Identities = 81/321 (25%), Positives = 148/321 (45%), Gaps = 35/321 (10%)

Query: 65  EVKALRKEEVRLEKEE-KRELEDLKKVKKDLDEARKDVERRLEELERKL---AKDVKVEE 120
           E K  R EE+R +  E ++ LE+LK   ++L++A K V++++E L+ +L   +    +E+
Sbjct: 338 EKKKERAEEIREKLSEIEKRLEELKPYVEELEDA-KQVQKQIERLKARLKGLSPGEVIEK 396

Query: 121 LD------------IKEVLDYIREAQGILQDYMRKLGSFRYRL--MPDRLREIGEEMTKE 166
           L+            IKE+   I + +    + M+ +   R      P   RE+ EE  KE
Sbjct: 397 LESLEKERTEIEEAIKEITTRIGQMEQEKNERMKAIEELRKAKGKCPVCGRELTEEHKKE 456

Query: 167 LKEKAKDPLKKVESQTKRVIDDIEKSLDVVRDLEKDLRK--MLQDTRISLDDLRR----- 219
           L E+    +KK+E + KR  ++  K    +R LE  LR+  +++D    + +L       
Sbjct: 457 LMERYTLEIKKIEEELKRTTEEERKLRVNLRKLEIKLREFSVMRDIAEQIKELESKLKGF 516

Query: 220 YLEEFSRFSQDFGRIVGEYERIEESLVSFERDISERTHLSEVLSEEGKLRLLKDASDNLK 279
            LEE  +  ++F  +  E+ +++  L+  ERD      L  + + EG+ +L+++     K
Sbjct: 517 NLEELEQKEREFEGLNEEFNKLKGELLGLERD------LKRIKALEGRRKLIEEKVRKAK 570

Query: 280 EVVSETRRAFAEVHRLSQTISGLRFDEAKLKRLEDYLEGLLRKESYSERLAKVTLKQIEK 339
           E +    R   E+   S     LR  E  L+   D      + ES    L     K+  +
Sbjct: 571 EELENLHRQLRELGFESVEELNLRIQE--LEEFHDKYVEAKKSESELRELKNKLEKEKTE 628

Query: 340 IKKQFIAFEDVQ-FVDLKKAK 359
           + + F    DV+  ++ K+AK
Sbjct: 629 LDQAFEMLADVENEIEEKEAK 649


>pir||B75150 chromosome segregation protein (smc1) PAB2109 - Pyrococcus abyssi
           (strain Orsay) >gi|5457791|emb|CAB49281.1| (AJ248284)
           chromosome segregation protein (smc1) [Pyrococcus
           abyssi]
           Length = 1177
           
 Score = 68.7 bits (165), Expect = 1e-10
 Identities = 76/317 (23%), Positives = 154/317 (47%), Gaps = 48/317 (15%)

Query: 68  ALRKEEVRLEKEEKRE---LEDLKKVKKDL---DEARKDVERRLEELERKL---AKDVKV 118
           ALR  +++   E  R    L ++KKV+ ++   DE  + +E  ++E+E KL   AK++  
Sbjct: 214 ALRYLDLKERLERARVELILGEIKKVESEIKGNDERIEKIEEEIKEIEEKLEEIAKEIVR 273

Query: 119 EELDIKEVLDYI-REAQGILQDYMRKLGSFRYRLMPDRLREIGEEMTKELKEKAKDPLKK 177
           +E ++KEV + I +E+        R++G    ++    L +   E+ K+  ++A+  L K
Sbjct: 274 KERELKEVEELIEKESSEEALKITREIGEVNSKI---NLAKRNIEVAKKELDEAQIRLIK 330

Query: 178 VESQTKRVIDDIEKS--------------LDVVRDLEKDLRKMLQDTRISLDDLRRYLEE 223
            + + K+V+ +IEKS              L+ +++LE++  K++    + L ++ R    
Sbjct: 331 AKDELKKVLSEIEKSKGAIARWGKRKEALLNKIKELEEERNKLV----VKLGEIDR---T 383

Query: 224 FSRFSQDFGRIVGEYERIEESLVSFERDISERTHLSEVLSE-----EGKLRLLKDASDNL 278
           F+   ++F  +V E E   +SL   E DI       E LS      + KL  +++  + L
Sbjct: 384 FAVAREEFDNVVKELENARKSLYENEADIKRLEAEKERLSSRITILKAKLPGIREEVEKL 443

Query: 279 KEVVSETRRAFAEVHRLSQTIS--------GLRFDEAKLKRLEDYLEGLLRKESYSERLA 330
           +E + E +   + V     +IS         L    ++L+++   LE L R+   +E  +
Sbjct: 444 REKLEEKKAELSNVENKISSISQRRRKVEEELEKKTSELQKVSSELESLERELIKAEAQS 503

Query: 331 KVTL-KQIEKIKKQFIA 346
           +V + + +E++K+  I+
Sbjct: 504 EVRVNRAVEELKRSGIS 520


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.137    0.364 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120223715
Number of Sequences: 2977
Number of extensions: 5150145
Number of successful extensions: 69123
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 69062
Number of HSP's gapped (non-prelim): 24
length of query: 367
length of database: 189,106,746
effective HSP length: 61
effective length of query: 306
effective length of database: 152,599,039
effective search space: 46695305934
effective search space used: 46695305934
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)