BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0466 (rps10P) DE:SSU ribosomal protein S10P (rps10P)
(102 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75110 ssu ribosomal protein s10p (rps10p) PAB0466 - Pyroco... 199 5e-51
sp|O59152|RS10_PYRHO 30S RIBOSOMAL PROTEIN S10P >gi|7440298|pir|... 198 1e-50
sp|P26753|RS10_PYRWO 30S RIBOSOMAL PROTEIN S10P >gi|99237|pir||S... 196 7e-50
sp|P54029|RS10_METJA 30S RIBOSOMAL PROTEIN S10P >gi|2119077|pir|... 150 4e-36
sp|O27133|RS10_METTH 30S RIBOSOMAL PROTEIN S10P >gi|7440300|pir|... 145 9e-35
gi|11498543 SSU ribosomal protein S10P (rps10P) [Archaeoglobus f... 139 5e-33
sp|P48854|RS10_HALHA 30S RIBOSOMAL PROTEIN S10P >gi|7440307|pir|... 136 8e-32
sp|P23357|RS10_HALMA 30S RIBOSOMAL PROTEIN S10P (HMAS10) 134 2e-31
sp|P28079|RS10_THEAC 30S RIBOSOMAL PROTEIN S10P >gi|99279|pir||S... 131 2e-30
sp|P14039|RS10_METVA 30S RIBOSOMAL PROTEIN S10P >gi|70929|pir||R... 130 3e-30
gb|AAK40558.1| SSU ribosomal protein S10AB (rps10AB) [Sulfolobus... 127 4e-29
sp|P17199|RS10_SULAC 30S RIBOSOMAL PROTEIN S10P >gi|70930|pir||R... 127 4e-29
sp|P35027|RS10_SULSO 30S RIBOSOMAL PROTEIN S10P >gi|7440308|pir|... 127 4e-29
sp|Q9YAV2|RS10_AERPE 30S RIBOSOMAL PROTEIN S10P >gi|7440303|pir|... 125 9e-29
pir||S54735 ribosomal protein 10 - Desulfurococcus mobilis (frag... 111 2e-24
sp|P55828|RS20_DROME 40S RIBOSOMAL PROTEIN S20 >gi|1841421|emb|C... 92 1e-18
gi|4506697 ribosomal protein S20 [Homo sapiens] >gi|11425027|ref... 92 2e-18
sp|P23403|RS20_XENLA 40S RIBOSOMAL PROTEIN S20 (S22) >gi|85846|p... 92 2e-18
sp|O74893|RS20_SCHPO 40S RIBOSOMAL PROTEIN S20 >gi|7489979|pir||... 91 2e-18
gi|6321772 Ribosomal protein S20; Rps20p [Saccharomyces cerevisi... 90 5e-18
pir||T12992 ribosomal protein S20, cytosolic - Arabidopsis thali... 88 2e-17
pir||T48979 40S ribsomomal protein - Arabidopsis thaliana >gi|76... 88 2e-17
emb|CAB60882.2| (AL132880) predicted using Genefinder; prelimina... 88 3e-17
sp|P49200|RS20_ARATH 40S RIBOSOMAL PROTEIN S20 (S22) 87 6e-17
sp|P35686|RS20_ORYSA 40S RIBOSOMAL PROTEIN S20 >gi|481226|pir||S... 84 3e-16
gb|AAB86562.1| (AF030961) 40S rRNA protein homolog [Schistosoma ... 80 5e-15
sp|P41207|RS10_DESMO 30S RIBOSOMAL PROTEIN S10P >gi|410441|emb|C... 76 9e-14
sp|P38518|RS10_THEMA 30S RIBOSOMAL PROTEIN S10 >gi|481928|pir||S... 70 5e-12
sp|P57592|RS10_BUCAI 30S RIBOSOMAL PROTEIN S10 >gi|10039184|dbj|... 69 1e-11
dbj|BAA25820.1| (AB007156) ribosomal protein S20 [Homo sapiens] 68 2e-11
sp|Q9XD37|RS10_LEPIN 30S RIBOSOMAL PROTEIN S10 >gi|5163203|gb|AA... 68 2e-11
sp|P44378|RS10_HAEIN 30S RIBOSOMAL PROTEIN S10 >gi|1075260|pir||... 68 3e-11
sp|P02364|RS10_ECOLI 30S RIBOSOMAL PROTEIN S10 >gi|70926|pir||R3... 66 1e-10
sp|P80375|RS10_THETH 30S RIBOSOMAL PROTEIN S10 >gi|10835572|pdb|... 66 1e-10
>pir||D75110 ssu ribosomal protein s10p (rps10p) PAB0466 - Pyrococcus abyssi
(strain Orsay) >gi|5458108|emb|CAB49597.1| (AJ248285)
SSU ribosomal protein S10P (rps10P) [Pyrococcus abyssi]
Length = 102
Score = 199 bits (502), Expect = 5e-51
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT
Sbjct: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
Query: 61 FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIELIS 102
FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIELIS
Sbjct: 61 FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIELIS 102
>sp|O59152|RS10_PYRHO 30S RIBOSOMAL PROTEIN S10P >gi|7440298|pir||F71023 probable
ribosomal protein S10 - Pyrococcus horikoshii
>gi|3257907|dbj|BAA30590.1| (AP000006) 102aa long
hypothetical 30S ribosomal protein S10 [Pyrococcus
horikoshii]
Length = 102
Score = 198 bits (499), Expect = 1e-50
Identities = 101/102 (99%), Positives = 102/102 (99%)
Query: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
MQKARIKLASTNVRSLEEVANQI+QIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT
Sbjct: 1 MQKARIKLASTNVRSLEEVANQIRQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
Query: 61 FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIELIS 102
FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIELIS
Sbjct: 61 FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIELIS 102
>sp|P26753|RS10_PYRWO 30S RIBOSOMAL PROTEIN S10P >gi|99237|pir||S19001 ribosomal protein
S10 - Pyrococcus woesei >gi|45948|emb|CAA42518.1|
(X59857) ribosomal protein S10 [Pyrococcus woesei]
Length = 102
Score = 196 bits (492), Expect = 7e-50
Identities = 98/102 (96%), Positives = 101/102 (98%)
Query: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
MQKARIK+ASTNVRSL+EVANQIKQIAERTGVRMSGPIPLPTKRIRI TRKSPDGEGSAT
Sbjct: 1 MQKARIKIASTNVRSLDEVANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSAT 60
Query: 61 FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIELIS 102
FDRWELR+HKRLIDIEADERAMRQIMRIRVPEDVTIEIELIS
Sbjct: 61 FDRWELRVHKRLIDIEADERAMRQIMRIRVPEDVTIEIELIS 102
>sp|P54029|RS10_METJA 30S RIBOSOMAL PROTEIN S10P >gi|2119077|pir||C64340 ribosomal
protein S10 - Methanococcus jannaschii
>gi|1591041|gb|AAB98306.1| (U67486) SSU ribosomal
protein S10P (rpsJ) [Methanococcus jannaschii]
Length = 106
Score = 150 bits (375), Expect = 4e-36
Identities = 69/99 (69%), Positives = 90/99 (90%)
Query: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
MQ+ARIKL+ST+ + L+E+ QIK+IAE+TGV +SGPIPLPTK +R+VTRKSPDGEGS+T
Sbjct: 6 MQRARIKLSSTDHKVLDEICRQIKEIAEKTGVDISGPIPLPTKVLRVVTRKSPDGEGSST 65
Query: 61 FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIE 99
FDRW ++IHKRLIDI+ADERA+R IM+IR+P++V IEI+
Sbjct: 66 FDRWTMKIHKRLIDIDADERALRHIMKIRIPDNVQIEIQ 104
>sp|O27133|RS10_METTH 30S RIBOSOMAL PROTEIN S10P >gi|7440300|pir||G69007 ribosomal
protein S10 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622159|gb|AAB85550.1| (AE000877)
ribosomal protein S20 (E.coli S10) [Methanobacterium
thermoautotrophicum]
Length = 102
Score = 145 bits (363), Expect = 9e-35
Identities = 69/102 (67%), Positives = 87/102 (84%)
Query: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
M KARIKL T+ L V +Q+K+IAERTGV MSGPIPLPTKR+ + TRKSPDGEG+AT
Sbjct: 1 MHKARIKLTGTDPEKLAYVCDQLKKIAERTGVDMSGPIPLPTKRLVVPTRKSPDGEGTAT 60
Query: 61 FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIELIS 102
+++WE+RIHKRL+ IEADERAMRQ+M++ VP++V+IEIEL S
Sbjct: 61 WEKWEMRIHKRLVGIEADERAMRQVMKVNVPDNVSIEIELKS 102
>gi|11498543 SSU ribosomal protein S10P (rps10P) [Archaeoglobus fulgidus]
>gi|6226048|sp|O29324|RS10_ARCFU 30S RIBOSOMAL PROTEIN
S10P >gi|7440299|pir||B69367 SSU ribosomal protein S10P
(rps10P) homolog - Archaeoglobus fulgidus
>gi|2649669|gb|AAB90311.1| (AE001039) SSU ribosomal
protein S10P (rps10P) [Archaeoglobus fulgidus]
Length = 106
Score = 139 bits (348), Expect = 5e-33
Identities = 65/100 (65%), Positives = 82/100 (82%)
Query: 3 KARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFD 62
KARIKL+ N R L+ + +QIK+IA +TGV +SGP+PLPT+R+ + RK+PDGEGS T+D
Sbjct: 7 KARIKLSGLNPRELDRICSQIKEIANKTGVELSGPVPLPTRRMVVPVRKAPDGEGSETWD 66
Query: 63 RWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIELIS 102
WE+R+HKRLIDI ADERA+RQIMRI+VP DV IEI L S
Sbjct: 67 HWEMRVHKRLIDISADERALRQIMRIQVPRDVNIEIVLES 106
>sp|P48854|RS10_HALHA 30S RIBOSOMAL PROTEIN S10P >gi|7440307|pir||T09380 ribosomal
protein S10 [similarity] - Halobacterium salinarum
>gi|509675|dbj|BAA06846.1| (D32120) ribosomal protein
S10 [Halobacterium halobium] >gi|10582030|gb|AAG20681.1|
(AE005137) 30S ribosomal protein S10P; Rps10p
[Halobacterium sp. NRC-1] >gi|1583108|prf||2120229B
ribosomal protein S10 [Halobacterium halobium]
Length = 102
Score = 136 bits (338), Expect = 8e-32
Identities = 58/100 (58%), Positives = 85/100 (85%)
Query: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
MQ+AR++LA + L+ + ++++IA++TGV++SGP+PLPTK + + +RKSPDGEG+AT
Sbjct: 1 MQQARVRLAGVDPDDLDNICGEVQEIADKTGVKVSGPVPLPTKTLEVPSRKSPDGEGTAT 60
Query: 61 FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL 100
++ WE+R+HKRLIDI+ADERA+RQ+MRI+VP DV IEI L
Sbjct: 61 WEHWEMRVHKRLIDIDADERALRQLMRIQVPNDVNIEIVL 100
>sp|P23357|RS10_HALMA 30S RIBOSOMAL PROTEIN S10P (HMAS10)
Length = 100
Score = 134 bits (335), Expect = 2e-31
Identities = 57/97 (58%), Positives = 83/97 (84%)
Query: 2 QKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATF 61
Q+AR++LA T+ L+++ +++IA +TGV +SGP+PLPTK + + +RKSPDGEG+AT+
Sbjct: 3 QQARVRLAGTSPEDLDDICADVREIANKTGVELSGPVPLPTKTLEVPSRKSPDGEGTATW 62
Query: 62 DRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEI 98
+ WE+R+HKRLIDI+ADERA+RQ+MRI+VP DV+IEI
Sbjct: 63 EHWEMRVHKRLIDIDADERALRQLMRIQVPNDVSIEI 99
>sp|P28079|RS10_THEAC 30S RIBOSOMAL PROTEIN S10P >gi|99279|pir||S26288 ribosomal protein
S10 - Thermoplasma acidophilum >gi|48099|emb|CAA45361.1|
(X63903) ribosomal protein S10 [Thermoplasma
acidophilum] >gi|10639615|emb|CAC11587.1| (AL445064)
probable 30S ribosomal protein S10 [Thermoplasma
acidophilum]
Length = 104
Score = 131 bits (326), Expect = 2e-30
Identities = 60/100 (60%), Positives = 80/100 (80%)
Query: 3 KARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFD 62
KARI L+ T R ++ V N+IK+IA RTGV + GP+PLPTKR+ + RKSPDGEG+ T+D
Sbjct: 5 KARISLSGTEHRVVDRVCNEIKEIASRTGVEIHGPMPLPTKRLVVPVRKSPDGEGTNTWD 64
Query: 63 RWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIELIS 102
WE+RIHKRLID++ADER +RQ+MRI +P+ V IEI++ S
Sbjct: 65 HWEMRIHKRLIDVDADERTLRQLMRIPIPDGVQIEIQIKS 104
>sp|P14039|RS10_METVA 30S RIBOSOMAL PROTEIN S10P >gi|70929|pir||R3MX10 ribosomal
protein S10 - Methanococcus vannielii
>gi|44788|emb|CAA34093.1| (X15972) ribosomal protein
S10 (AA 1-91) [Methanococcus vannielii]
Length = 91
Score = 130 bits (324), Expect = 3e-30
Identities = 60/89 (67%), Positives = 75/89 (83%)
Query: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
MQKARIKL+ST L+ V NQIK IAE+TGV M+GPIPLPTK ++I TRKS DGEGS++
Sbjct: 1 MQKARIKLSSTKHEELDSVCNQIKAIAEKTGVDMAGPIPLPTKSLKITTRKSTDGEGSSS 60
Query: 61 FDRWELRIHKRLIDIEADERAMRQIMRIR 89
FDRW +R+HKR+IDIEADER M+ IM+++
Sbjct: 61 FDRWTMRVHKRVIDIEADERTMKHIMKVK 89
>gb|AAK40558.1| SSU ribosomal protein S10AB (rps10AB) [Sulfolobus solfataricus]
Length = 102
Score = 127 bits (315), Expect = 4e-29
Identities = 59/99 (59%), Positives = 76/99 (76%)
Query: 3 KARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFD 62
KARI+L STNV +L V QI+ I E+TG+ M GPIPLPT ++ + + P GEG ++
Sbjct: 4 KARIRLWSTNVENLNYVITQIRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWE 63
Query: 63 RWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIELI 101
+WE+R+HKRLIDI ADER MRQ+MR+RVPEDV IEI+LI
Sbjct: 64 KWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQLI 102
>sp|P17199|RS10_SULAC 30S RIBOSOMAL PROTEIN S10P >gi|70930|pir||R3UC10 ribosomal protein
S10 - Sulfolobus acidocaldarius
>gi|46565|emb|CAA36609.1| (X52382) ribosomal protein S10
(AA 1-102) [Sulfolobus acidocaldarius]
>gi|229088|prf||1817447C ribosomal protein S10
[Sulfolobus acidocaldarius]
Length = 102
Score = 127 bits (315), Expect = 4e-29
Identities = 57/99 (57%), Positives = 79/99 (79%)
Query: 3 KARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFD 62
KARI+L S+N+ SL V NQI+ +A++TG+++SGPIPLPT R+ + + P GEG ++
Sbjct: 4 KARIRLWSSNIDSLNFVVNQIRNMAQKTGIQVSGPIPLPTTRMEVPVMRLPHGEGKKKWE 63
Query: 63 RWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIELI 101
WE+++HKR+IDI ADER MRQ+MR+RVP+DV IEIELI
Sbjct: 64 HWEMKVHKRIIDIAADERVMRQLMRVRVPDDVYIEIELI 102
>sp|P35027|RS10_SULSO 30S RIBOSOMAL PROTEIN S10P >gi|7440308|pir||T11748 ribosomal
protein S10 - Sulfolobus solfataricus
>gi|510210|emb|CAA54163.1| (X76767) ribosomal protein
S10 [Sulfolobus solfataricus]
Length = 102
Score = 127 bits (315), Expect = 4e-29
Identities = 59/99 (59%), Positives = 76/99 (76%)
Query: 3 KARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFD 62
KARI+L STNV +L V QI+ I E+TG+ M GPIPLPT ++ + + P GEG ++
Sbjct: 4 KARIRLWSTNVENLNYVITQIRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWE 63
Query: 63 RWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIELI 101
+WE+R+HKRLIDI ADER MRQ+MR+RVPEDV IEI+LI
Sbjct: 64 KWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQLI 102
>sp|Q9YAV2|RS10_AERPE 30S RIBOSOMAL PROTEIN S10P >gi|7440303|pir||A72570 probable
ribosomal protein S10 APE1842 - Aeropyrum pernix
(strain K1) >gi|5105533|dbj|BAA80846.1| (AP000062) 104aa
long hypothetical 30S ribosomal protein S10 [Aeropyrum
pernix]
Length = 104
Score = 125 bits (312), Expect = 9e-29
Identities = 58/97 (59%), Positives = 75/97 (76%)
Query: 3 KARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFD 62
K RI L STNVRSLE V QI+ IA +TG+RM GP+PLP KR+ + + P GEGS ++
Sbjct: 4 KLRIWLWSTNVRSLENVVEQIRNIANKTGIRMRGPVPLPVKRLEVPVFRLPHGEGSKYWE 63
Query: 63 RWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIE 99
WE+++HKRLID+EADER +R +MRI+VPEDV IEI+
Sbjct: 64 HWEMKVHKRLIDLEADERVLRHLMRIKVPEDVYIEIK 100
>pir||S54735 ribosomal protein 10 - Desulfurococcus mobilis (fragment)
Length = 98
Score = 111 bits (275), Expect = 2e-24
Identities = 49/96 (51%), Positives = 73/96 (76%)
Query: 5 RIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFDRW 64
+IK+ STNV+ L++ +I I ++TGVRM GPIPLPTKR++I T K P GEG +++W
Sbjct: 3 KIKIWSTNVKVLDDFVGKITDIVKKTGVRMDGPIPLPTKRMKIRTMKLPHGEGKKKYEKW 62
Query: 65 ELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL 100
E+RIHKRL+ I DER M+Q++R+R+ ++ +EIE+
Sbjct: 63 EMRIHKRLLYIAEDERVMKQLIRVRIHPEIWMEIEI 98
>sp|P55828|RS20_DROME 40S RIBOSOMAL PROTEIN S20 >gi|1841421|emb|CAA72004.1| (Y11119) S20
ribosomal protein [Drosophila melanogaster]
>gi|7300661|gb|AAF55809.1| (AE003732) RpS20 gene product
[Drosophila melanogaster]
Length = 120
Score = 92.1 bits (225), Expect = 1e-18
Identities = 42/100 (42%), Positives = 66/100 (66%)
Query: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
+ + RI L S NVRSLE V + A+ +R+ GP+ +PTK +RI TRK+P GEGS T
Sbjct: 19 VHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRITTRKTPCGEGSKT 78
Query: 61 FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL 100
+DR+++RIHKR+ID+ + +++I I + V +E+ +
Sbjct: 79 WDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTI 118
>gi|4506697 ribosomal protein S20 [Homo sapiens] >gi|11425027|ref|XP_005180.1|
ribosomal protein S20 [Homo sapiens]
>gi|133875|sp|P17075|RS20_HUMAN 40S RIBOSOMAL PROTEIN
S20 >gi|70925|pir||R3RT20 ribosomal protein S20,
cytosolic [validated] - rat >gi|423075|pir||S33710
ribosomal protein S20, cytosolic - human
>gi|57720|emb|CAA35917.1| (X51537) ribosomal protein S20
(AA 1-119) [Rattus rattus] >gi|292443|gb|AAA60286.1|
(L06498) ribosomal protein S20 [Homo sapiens]
Length = 119
Score = 91.7 bits (224), Expect = 2e-18
Identities = 42/100 (42%), Positives = 68/100 (68%)
Query: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
+ + RI L S NV+SLE+V + + A+ +++ GP+ +PTK +RI TRK+P GEGS T
Sbjct: 17 IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKT 76
Query: 61 FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL 100
+DR+++RIHKRLID+ + ++QI I + V +E+ +
Sbjct: 77 WDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTI 116
>sp|P23403|RS20_XENLA 40S RIBOSOMAL PROTEIN S20 (S22) >gi|85846|pir||A37974 ribosomal
protein S20, cytosolic - African clawed frog
>gi|214758|gb|AAA49953.1| (M34706) ribosomal protein
S22, 40S subunit [Xenopus laevis]
Length = 119
Score = 91.7 bits (224), Expect = 2e-18
Identities = 42/100 (42%), Positives = 68/100 (68%)
Query: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
+ + RI L S NV+SLE+V + + A+ +++ GP+ +PTK +RI TRK+P GEGS T
Sbjct: 17 IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKT 76
Query: 61 FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL 100
+DR+++RIHKRLID+ + ++QI I + V +E+ +
Sbjct: 77 WDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTI 116
>sp|O74893|RS20_SCHPO 40S RIBOSOMAL PROTEIN S20 >gi|7489979|pir||T41419 40s ribosomal
protein s20 - fission yeast (Schizosaccharomyces pombe)
>gi|3687464|emb|CAA21188.1| (AL031798) 40s ribosomal
protein s20. [Schizosaccharomyces pombe]
>gi|9837243|gb|AAG00495.1|AF282863_1 (AF282863) 40S
robosomal protein S20 [Schizosaccharomyces pombe]
Length = 118
Score = 91.3 bits (223), Expect = 2e-18
Identities = 42/100 (42%), Positives = 68/100 (68%)
Query: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
+ + RI L S NVR+LE+V + + A+ +R+ GP+ LPTK ++I TRK+P+GEGS T
Sbjct: 17 VHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRKTPNGEGSKT 76
Query: 61 FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL 100
++ +E+RIHKRLID+ + ++QI I + V +E+ +
Sbjct: 77 WETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTI 116
>gi|6321772 Ribosomal protein S20; Rps20p [Saccharomyces cerevisiae]
>gi|730687|sp|P38701|RS20_YEAST 40S RIBOSOMAL PROTEIN
S20 >gi|626901|pir||S46829 ribosomal protein S20.e,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|515850|emb|CAA82331.1| (Z29089) Urp2p [Saccharomyces
cerevisiae] >gi|2289885|gb|AAB65068.1| (U11582) No
definition line found [Saccharomyces cerevisiae]
Length = 121
Score = 90.1 bits (220), Expect = 5e-18
Identities = 44/100 (44%), Positives = 69/100 (69%)
Query: 3 KARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFD 62
K RI L ST V+ LE V++ I + AE+ + GP+ LPTK ++I TRK+P+GEGS T++
Sbjct: 21 KIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWE 80
Query: 63 RWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIELIS 102
+E+RIHKR ID+EA + +++I +I + V +E+ + S
Sbjct: 81 TYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDVEVVVAS 120
>pir||T12992 ribosomal protein S20, cytosolic - Arabidopsis thaliana
>gi|5541704|emb|CAB51209.1| (AL096860) 40S RIBOSOMAL
PROTEIN S20 homolog [Arabidopsis thaliana]
Length = 122
Score = 88.2 bits (215), Expect = 2e-17
Identities = 41/100 (41%), Positives = 69/100 (69%)
Query: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
+ K RI L+S NV++LE+V + + A+ +R+ GP+ +PTK ++I TRK+P GEG+ T
Sbjct: 20 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 79
Query: 61 FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL 100
+DR+ELR+HKR+ID+ + ++QI I + V +E+ +
Sbjct: 80 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 119
>pir||T48979 40S ribsomomal protein - Arabidopsis thaliana
>gi|7671404|emb|CAB89318.1| (AL353992) 40S ribsomomal
protein [Arabidopsis thaliana]
>gi|8809643|dbj|BAA97194.1| (AB019235) 40S ribosomal
protein S20 [Arabidopsis thaliana]
Length = 117
Score = 88.2 bits (215), Expect = 2e-17
Identities = 41/100 (41%), Positives = 69/100 (69%)
Query: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
+ K RI L+S NV++LE+V + + A+ +R+ GP+ +PTK ++I TRK+P GEG+ T
Sbjct: 15 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 74
Query: 61 FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL 100
+DR+ELR+HKR+ID+ + ++QI I + V +E+ +
Sbjct: 75 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 114
>emb|CAB60882.2| (AL132880) predicted using Genefinder; preliminary prediction
[Caenorhabditis elegans]
Length = 135
Score = 87.8 bits (214), Expect = 3e-17
Identities = 44/96 (45%), Positives = 64/96 (65%)
Query: 3 KARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFD 62
+ R+ L S NV+ LE+V Q+ A+ + + GPI +PTK +RI TRK+P GEGS T+D
Sbjct: 36 RIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTWD 95
Query: 63 RWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEI 98
R+++RIHKRLI++ A +RQI I + V IE+
Sbjct: 96 RFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEV 131
>sp|P49200|RS20_ARATH 40S RIBOSOMAL PROTEIN S20 (S22)
Length = 117
Score = 86.6 bits (211), Expect = 6e-17
Identities = 41/100 (41%), Positives = 68/100 (68%)
Query: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
+ K RI L+S NV++LE+V + + A+ +R+ GP+ +PTK ++I TRK+P GEG+ T
Sbjct: 15 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 74
Query: 61 FDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL 100
+DR+ELR+HKR+ID+ + ++QI I + V E+ +
Sbjct: 75 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEXEVTI 114
>sp|P35686|RS20_ORYSA 40S RIBOSOMAL PROTEIN S20 >gi|481226|pir||S38356 ribosomal protein
S20, cytosolic - rice >gi|391875|dbj|BAA02157.1|
(D12632) 40S subunit ribosomal protein [Oryza sativa]
Length = 117
Score = 84.3 bits (205), Expect = 3e-16
Identities = 38/98 (38%), Positives = 67/98 (67%)
Query: 3 KARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFD 62
+ RI L+S +V++LE+V + + A+ +++ GP+ +PTK + I TRKSP GEG+ T+D
Sbjct: 17 RIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWD 76
Query: 63 RWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL 100
R+E+R+HKR+ID+ + ++QI I + V +E+ +
Sbjct: 77 RFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 114
>gb|AAB86562.1| (AF030961) 40S rRNA protein homolog [Schistosoma mansoni]
Length = 111
Score = 80.4 bits (195), Expect = 5e-15
Identities = 37/96 (38%), Positives = 65/96 (67%)
Query: 5 RIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFDRW 64
R+ L + +V+ LE+V + + + A+ +R+ GP+ +PTK +RI TRK+P GEGS T+DR+
Sbjct: 12 RVTLTAASVKPLEKVTDGLIKKAKDQNLRVKGPVRMPTKVLRITTRKTPCGEGSKTWDRF 71
Query: 65 ELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL 100
+ RIHKR+ID+ + + A +Q+ I V ++++
Sbjct: 72 QFRIHKRVIDLLSTDEATQQLKHIYXEPGVNCDVKV 107
>sp|P41207|RS10_DESMO 30S RIBOSOMAL PROTEIN S10P >gi|410441|emb|CAA51985.1| (X73582)
ribosomal protein 10 [Desulfurococcus mobilis]
Length = 65
Score = 76.1 bits (184), Expect = 9e-14
Identities = 33/63 (52%), Positives = 47/63 (74%)
Query: 5 RIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFDRW 64
+IK+ STNV+ L++ +I I ++TGVRM GPIPLPTKR++I T K P GEG +++W
Sbjct: 3 KIKIWSTNVKVLDDFVGKITDIVKKTGVRMDGPIPLPTKRMKIRTMKLPHGEGKKKYEKW 62
Query: 65 ELR 67
E+R
Sbjct: 63 EMR 65
>sp|P38518|RS10_THEMA 30S RIBOSOMAL PROTEIN S10 >gi|481928|pir||S40187 ribosomal protein
S10 - Thermotoga maritima (strain MSB8)
>gi|437922|emb|CAA79776.1| (Z21677) ribosomal protein
S10 [Thermotoga maritima]
>gi|4982065|gb|AAD36567.1|AE001798_32 (AE001798)
ribosomal protein S10 [Thermotoga maritima]
Length = 102
Score = 70.2 bits (169), Expect = 5e-12
Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 2 QKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATF 61
QK RIKL + + L+E A +I ++A+ T ++SGPIPLPT+R +SP +
Sbjct: 4 QKIRIKLKAYDHELLDESAKKIVEVAKSTNSKVSGPIPLPTERTLYCVLRSPMKHKDSR- 62
Query: 62 DRWELRIHKRLID-IEADERAMRQIMRIRVPEDVTIEIEL 100
+ +E R+HKRLID I+ + + +MRI +P V +EI+L
Sbjct: 63 EHFEKRVHKRLIDIIDPSPKTIDALMRINLPAGVDVEIKL 102
>sp|P57592|RS10_BUCAI 30S RIBOSOMAL PROTEIN S10 >gi|10039184|dbj|BAB13218.1| (AP001119)
30S ribosomal protein S10 [Buchnera sp. APS]
Length = 103
Score = 69.1 bits (166), Expect = 1e-11
Identities = 38/100 (38%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 2 QKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATF 61
Q+ RI+L + + R +++ +I + A+RTG ++ GPIPLPT++ R SP A
Sbjct: 4 QRIRIRLKAFDHRLIDQSTTEIVETAKRTGAQVRGPIPLPTRKERFTILVSPHVNKDAR- 62
Query: 62 DRWELRIHKRLIDI-EADERAMRQIMRIRVPEDVTIEIEL 100
D++E+R HKRLIDI E E+ + +MR+ + V ++I L
Sbjct: 63 DQYEIRTHKRLIDIVEPTEKTVDALMRLDLAAGVDVQISL 102
>dbj|BAA25820.1| (AB007156) ribosomal protein S20 [Homo sapiens]
Length = 60
Score = 68.3 bits (164), Expect = 2e-11
Identities = 30/59 (50%), Positives = 43/59 (72%)
Query: 36 GPIPLPTKRIRIVTRKSPDGEGSATFDRWELRIHKRLIDIEADERAMRQIMRIRVPEDV 94
GP+ +PTK +RI TRK+P GEGS T+DR+++RIHKRLID+ + ++QI I + V
Sbjct: 2 GPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60
>sp|Q9XD37|RS10_LEPIN 30S RIBOSOMAL PROTEIN S10 >gi|5163203|gb|AAD40582.1|AF115283_1
(AF115283) ribosomal protein S10 [Leptospira
interrogans]
Length = 102
Score = 68.3 bits (164), Expect = 2e-11
Identities = 36/99 (36%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Query: 2 QKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATF 61
QK R+KL + + R +++ +I A+RTG +SGPIPLPTK+ +SP +
Sbjct: 4 QKIRVKLKAFDHRLIDQSTYEIVATAKRTGATVSGPIPLPTKKEIYTVLRSPH-VNKKSR 62
Query: 62 DRWELRIHKRLIDI-EADERAMRQIMRIRVPEDVTIEIE 99
+++EL+ HKRLIDI + +E + +M++++P V+++I+
Sbjct: 63 EQFELKTHKRLIDILDTNEDTVEALMKLQLPAGVSVDIK 101
>sp|P44378|RS10_HAEIN 30S RIBOSOMAL PROTEIN S10 >gi|1075260|pir||D64092 ribosomal protein
S10 - Haemophilus influenzae (strain Rd KW20)
>gi|1573786|gb|AAC22435.1| (U32761) ribosomal protein
S10 (rpS10) [Haemophilus influenzae Rd]
Length = 118
Score = 67.9 bits (163), Expect = 3e-11
Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 2 QKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATF 61
Q+ RI+L + + R +++ +I + A+RTG ++ GPIPLPT++ R SP A
Sbjct: 19 QRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDAR- 77
Query: 62 DRWELRIHKRLIDI-EADERAMRQIMRIRVPEDVTIEIEL 100
D++E+R HKRL+DI E E+ + +MR+ + V ++I L
Sbjct: 78 DQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISL 117
>sp|P02364|RS10_ECOLI 30S RIBOSOMAL PROTEIN S10 >gi|70926|pir||R3EC10 ribosomal protein
S10 [validated] - Escherichia coli
>gi|42826|emb|CAA26459.1| (X02613) ribosomal protein S10
(rpsJ) (aa 1-103) [Escherichia coli]
>gi|42857|emb|CAA23633.1| (V00344) ribosomal protein S10
[Escherichia coli] >gi|606255|gb|AAA58118.1| (U18997)
30S ribosomal subunit protein S10 [Escherichia coli]
>gi|1789717|gb|AAC76346.1| (AE000408) 30S ribosomal
subunit protein S10 [Escherichia coli K12]
>gi|1096320|prf||2111328B NusE protein [Escherichia
coli]
Length = 103
Score = 66.0 bits (158), Expect = 1e-10
Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 2 QKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATF 61
Q+ RI+L + + R +++ +I + A+RTG ++ GPIPLPT++ R SP A
Sbjct: 4 QRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDAR- 62
Query: 62 DRWELRIHKRLIDI-EADERAMRQIMRIRVPEDVTIEIEL 100
D++E+R H RL+DI E E+ + +MR+ + V ++I L
Sbjct: 63 DQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL 102
>sp|P80375|RS10_THETH 30S RIBOSOMAL PROTEIN S10 >gi|10835572|pdb|1FJF|J Chain J,
Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit >gi|10835594|pdb|1FJG|J Chain J, Structure Of
The Thermus Thermophilus 30s Ribosomal Subunit In
Complex With The Antibiotics Streptomycin, Spectinomycin
And Paromomycin >gi|1022792|gb|AAA97863.1| (U36504) 30S
ribosomal protein S10 [Thermus thermophilus]
>gi|1143611|emb|CAA86407.1| (Z46265) ribosomal protein
s10 [Thermus thermophilus] >gi|1586539|prf||2204237B
ribosomal protein S10 [Thermus aquaticus thermophilus]
Length = 105
Score = 66.0 bits (158), Expect = 1e-10
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSAT 60
M K RIKL + ++L+ A +I + A R+G ++SGPIPLPT+ R + P +
Sbjct: 1 MPKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSR 60
Query: 61 FDRWELRIHKRLID-IEADERAMRQIMRIRVPEDVTIEIELI 101
+ +ELR H RL+D I + + + Q+M + +P V IEI+ +
Sbjct: 61 -EHFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEIKTV 101
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.135 0.366
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31767459
Number of Sequences: 2977
Number of extensions: 1144001
Number of successful extensions: 3264
Number of sequences better than 1.0e-10: 34
Number of HSP's better than 0.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3228
Number of HSP's gapped (non-prelim): 34
length of query: 102
length of database: 189,106,746
effective HSP length: 56
effective length of query: 46
effective length of database: 155,591,474
effective search space: 7157207804
effective search space used: 7157207804
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 158 (66.0 bits)