BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0467 (PAB0467) DE:Hypothetical protein
         (119 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75110 hypothetical protein PAB0467 - Pyrococcus abyssi (st...   245  2e-64
pir||D71023 hypothetical protein PH1481 - Pyrococcus horikoshii ...   211  2e-54
sp|Q57917|Y494_METJA HYPOTHETICAL PROTEIN MJ0494 >gi|2128342|pir...   102  1e-21
pir||E69191 conserved hypothetical protein MTH687 - Methanobacte...    89  2e-17
gi|11498100 conserved hypothetical protein [Archaeoglobus fulgid...    74  5e-13

>pir||F75110 hypothetical protein PAB0467 - Pyrococcus abyssi (strain Orsay)
           >gi|5458110|emb|CAB49599.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 119
           
 Score =  245 bits (618), Expect = 2e-64
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MMKLKTLPPTLRDKNRYIAFEIISDDEFTKDEVKSLIWEASLRVLGELGTALAKPWFIKY 60
           MMKLKTLPPTLRDKNRYIAFEIISDDEFTKDEVKSLIWEASLRVLGELGTALAKPWFIKY
Sbjct: 1   MMKLKTLPPTLRDKNRYIAFEIISDDEFTKDEVKSLIWEASLRVLGELGTALAKPWFIKY 60

Query: 61  DPKTKTGIVRCDREYVEHLRFALMLATDFNGKRLIIRTLGVSGTIKRLKKKFLSQYGWK 119
           DPKTKTGIVRCDREYVEHLRFALMLATDFNGKRLIIRTLGVSGTIKRLKKKFLSQYGWK
Sbjct: 61  DPKTKTGIVRCDREYVEHLRFALMLATDFNGKRLIIRTLGVSGTIKRLKKKFLSQYGWK 119


>pir||D71023 hypothetical protein PH1481 - Pyrococcus horikoshii
           >gi|3257905|dbj|BAA30588.1| (AP000006) 120aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 120
           
 Score =  211 bits (532), Expect = 2e-54
 Identities = 99/119 (83%), Positives = 110/119 (92%)

Query: 1   MMKLKTLPPTLRDKNRYIAFEIISDDEFTKDEVKSLIWEASLRVLGELGTALAKPWFIKY 60
           M KLKTLPPTLRDKNRYIAFEIISD +FTKDEVK LIW++SL VLGE GTA+ KPW IK+
Sbjct: 2   MRKLKTLPPTLRDKNRYIAFEIISDGDFTKDEVKELIWKSSLEVLGETGTAIVKPWLIKF 61

Query: 61  DPKTKTGIVRCDREYVEHLRFALMLATDFNGKRLIIRTLGVSGTIKRLKKKFLSQYGWK 119
           DP TKTGIVRCDREYVE+LRFALML ++FNGKRLIIRTLGVSGTIKRLK+KFL++YGWK
Sbjct: 62  DPNTKTGIVRCDREYVEYLRFALMLVSEFNGKRLIIRTLGVSGTIKRLKRKFLAKYGWK 120


>sp|Q57917|Y494_METJA HYPOTHETICAL PROTEIN MJ0494 >gi|2128342|pir||F64361 hypothetical
           protein MJ0494 - Methanococcus jannaschii
           >gi|1591198|gb|AAB98484.1| (U67499) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 134
           
 Score =  102 bits (253), Expect = 1e-21
 Identities = 54/110 (49%), Positives = 75/110 (68%), Gaps = 2/110 (1%)

Query: 4   LKTLPPTLRDKNRYIAFEIISDDEFTKDEVKSLIWEASLRVLGELGTALAKPWFIKYDPK 63
           LKTLPPTLR+K RYIAF+I+ D+E  + EV +LI +A L   G  GT+ A PW + YD  
Sbjct: 5   LKTLPPTLREKKRYIAFKILYDEELKEGEVVNLIRKAVLEYYGSWGTSKANPWLVYYD-- 62

Query: 64  TKTGIVRCDREYVEHLRFALMLATDFNGKRLIIRTLGVSGTIKRLKKKFL 113
              GI+RC R+ V++++ +L+L  +F  K + I  LGVSGTI++ K KFL
Sbjct: 63  FPYGILRCQRDNVDYVKASLILIREFKEKPVNIICLGVSGTIRKAKIKFL 112


>pir||E69191 conserved hypothetical protein MTH687 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2621772|gb|AAB85192.1| (AE000848) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 124
           
 Score = 88.5 bits (216), Expect = 2e-17
 Identities = 47/116 (40%), Positives = 70/116 (59%), Gaps = 6/116 (5%)

Query: 4   LKTLPPTLRDKNRYIAFEIISDDEFTKDEVKSLIWEASLRVLGELGTALAKPWFIKY--- 60
           +K LPPTLR   RYIAFE+IS+ E +++E+ SLIW++ L++ GE  T+  + W +K    
Sbjct: 1   MKILPPTLRVPRRYIAFEVISERELSREELVSLIWDSCLKLHGECETSNFRLWLMKLWRF 60

Query: 61  ---DPKTKTGIVRCDREYVEHLRFALMLATDFNGKRLIIRTLGVSGTIKRLKKKFL 113
              D     GI++C R Y   +  AL  A   +G R+ I  LG+SGTI+   +KF+
Sbjct: 61  DFPDAVRVRGILQCQRGYERRVMMALTCAHHHSGVRVAIHILGLSGTIRSATQKFI 116


>gi|11498100 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7429934|pir||A69311 conserved hypothetical protein
           AF0489 - Archaeoglobus fulgidus
           >gi|2650137|gb|AAB90748.1| (AE001070) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 132
           
 Score = 74.1 bits (179), Expect = 5e-13
 Identities = 46/110 (41%), Positives = 64/110 (57%), Gaps = 3/110 (2%)

Query: 4   LKTLPPTLRDKNRYIAFEIISDDEFTKDEVKSLIWEASLRVLGELGTALAKPWFIKYDPK 63
           +K LPP+LR + RYIAF II++ +  +  +   + E  L + GE   A        +D +
Sbjct: 24  VKGLPPSLRSRKRYIAFRIIAEKKIDERSLSRALSEKMLSLFGECFAASGLR-LEAFDGE 82

Query: 64  TKTGIVRCDREYVEHLRFALMLATDFNGKRLIIRTLGVSGTIKRLKKKFL 113
              GIVRC RE ++ +  AL L T   G R+I  TLGVSGTIKR K+K+L
Sbjct: 83  R--GIVRCYREALDKVMVALTLMTHVGGVRVIPLTLGVSGTIKRCKRKYL 130


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.140    0.422 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42369069
Number of Sequences: 2977
Number of extensions: 1478802
Number of successful extensions: 3282
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3276
Number of HSP's gapped (non-prelim): 5
length of query: 119
length of database: 189,106,746
effective HSP length: 50
effective length of query: 69
effective length of database: 159,182,396
effective search space: 10983585324
effective search space used: 10983585324
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 160 (66.7 bits)