BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0467 (PAB0467) DE:Hypothetical protein
(119 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75110 hypothetical protein PAB0467 - Pyrococcus abyssi (st... 245 2e-64
pir||D71023 hypothetical protein PH1481 - Pyrococcus horikoshii ... 211 2e-54
sp|Q57917|Y494_METJA HYPOTHETICAL PROTEIN MJ0494 >gi|2128342|pir... 102 1e-21
pir||E69191 conserved hypothetical protein MTH687 - Methanobacte... 89 2e-17
gi|11498100 conserved hypothetical protein [Archaeoglobus fulgid... 74 5e-13
>pir||F75110 hypothetical protein PAB0467 - Pyrococcus abyssi (strain Orsay)
>gi|5458110|emb|CAB49599.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 119
Score = 245 bits (618), Expect = 2e-64
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MMKLKTLPPTLRDKNRYIAFEIISDDEFTKDEVKSLIWEASLRVLGELGTALAKPWFIKY 60
MMKLKTLPPTLRDKNRYIAFEIISDDEFTKDEVKSLIWEASLRVLGELGTALAKPWFIKY
Sbjct: 1 MMKLKTLPPTLRDKNRYIAFEIISDDEFTKDEVKSLIWEASLRVLGELGTALAKPWFIKY 60
Query: 61 DPKTKTGIVRCDREYVEHLRFALMLATDFNGKRLIIRTLGVSGTIKRLKKKFLSQYGWK 119
DPKTKTGIVRCDREYVEHLRFALMLATDFNGKRLIIRTLGVSGTIKRLKKKFLSQYGWK
Sbjct: 61 DPKTKTGIVRCDREYVEHLRFALMLATDFNGKRLIIRTLGVSGTIKRLKKKFLSQYGWK 119
>pir||D71023 hypothetical protein PH1481 - Pyrococcus horikoshii
>gi|3257905|dbj|BAA30588.1| (AP000006) 120aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 120
Score = 211 bits (532), Expect = 2e-54
Identities = 99/119 (83%), Positives = 110/119 (92%)
Query: 1 MMKLKTLPPTLRDKNRYIAFEIISDDEFTKDEVKSLIWEASLRVLGELGTALAKPWFIKY 60
M KLKTLPPTLRDKNRYIAFEIISD +FTKDEVK LIW++SL VLGE GTA+ KPW IK+
Sbjct: 2 MRKLKTLPPTLRDKNRYIAFEIISDGDFTKDEVKELIWKSSLEVLGETGTAIVKPWLIKF 61
Query: 61 DPKTKTGIVRCDREYVEHLRFALMLATDFNGKRLIIRTLGVSGTIKRLKKKFLSQYGWK 119
DP TKTGIVRCDREYVE+LRFALML ++FNGKRLIIRTLGVSGTIKRLK+KFL++YGWK
Sbjct: 62 DPNTKTGIVRCDREYVEYLRFALMLVSEFNGKRLIIRTLGVSGTIKRLKRKFLAKYGWK 120
>sp|Q57917|Y494_METJA HYPOTHETICAL PROTEIN MJ0494 >gi|2128342|pir||F64361 hypothetical
protein MJ0494 - Methanococcus jannaschii
>gi|1591198|gb|AAB98484.1| (U67499) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 134
Score = 102 bits (253), Expect = 1e-21
Identities = 54/110 (49%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
Query: 4 LKTLPPTLRDKNRYIAFEIISDDEFTKDEVKSLIWEASLRVLGELGTALAKPWFIKYDPK 63
LKTLPPTLR+K RYIAF+I+ D+E + EV +LI +A L G GT+ A PW + YD
Sbjct: 5 LKTLPPTLREKKRYIAFKILYDEELKEGEVVNLIRKAVLEYYGSWGTSKANPWLVYYD-- 62
Query: 64 TKTGIVRCDREYVEHLRFALMLATDFNGKRLIIRTLGVSGTIKRLKKKFL 113
GI+RC R+ V++++ +L+L +F K + I LGVSGTI++ K KFL
Sbjct: 63 FPYGILRCQRDNVDYVKASLILIREFKEKPVNIICLGVSGTIRKAKIKFL 112
>pir||E69191 conserved hypothetical protein MTH687 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621772|gb|AAB85192.1| (AE000848) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 124
Score = 88.5 bits (216), Expect = 2e-17
Identities = 47/116 (40%), Positives = 70/116 (59%), Gaps = 6/116 (5%)
Query: 4 LKTLPPTLRDKNRYIAFEIISDDEFTKDEVKSLIWEASLRVLGELGTALAKPWFIKY--- 60
+K LPPTLR RYIAFE+IS+ E +++E+ SLIW++ L++ GE T+ + W +K
Sbjct: 1 MKILPPTLRVPRRYIAFEVISERELSREELVSLIWDSCLKLHGECETSNFRLWLMKLWRF 60
Query: 61 ---DPKTKTGIVRCDREYVEHLRFALMLATDFNGKRLIIRTLGVSGTIKRLKKKFL 113
D GI++C R Y + AL A +G R+ I LG+SGTI+ +KF+
Sbjct: 61 DFPDAVRVRGILQCQRGYERRVMMALTCAHHHSGVRVAIHILGLSGTIRSATQKFI 116
>gi|11498100 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429934|pir||A69311 conserved hypothetical protein
AF0489 - Archaeoglobus fulgidus
>gi|2650137|gb|AAB90748.1| (AE001070) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 132
Score = 74.1 bits (179), Expect = 5e-13
Identities = 46/110 (41%), Positives = 64/110 (57%), Gaps = 3/110 (2%)
Query: 4 LKTLPPTLRDKNRYIAFEIISDDEFTKDEVKSLIWEASLRVLGELGTALAKPWFIKYDPK 63
+K LPP+LR + RYIAF II++ + + + + E L + GE A +D +
Sbjct: 24 VKGLPPSLRSRKRYIAFRIIAEKKIDERSLSRALSEKMLSLFGECFAASGLR-LEAFDGE 82
Query: 64 TKTGIVRCDREYVEHLRFALMLATDFNGKRLIIRTLGVSGTIKRLKKKFL 113
GIVRC RE ++ + AL L T G R+I TLGVSGTIKR K+K+L
Sbjct: 83 R--GIVRCYREALDKVMVALTLMTHVGGVRVIPLTLGVSGTIKRCKRKYL 130
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.140 0.422
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42369069
Number of Sequences: 2977
Number of extensions: 1478802
Number of successful extensions: 3282
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3276
Number of HSP's gapped (non-prelim): 5
length of query: 119
length of database: 189,106,746
effective HSP length: 50
effective length of query: 69
effective length of database: 159,182,396
effective search space: 10983585324
effective search space used: 10983585324
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 160 (66.7 bits)