BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0472 (PAB0472) DE:Hypothetical protein
         (267 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75111 hypothetical protein PAB0472 - Pyrococcus abyssi (st...   525  e-148
pir||E71022 hypothetical protein PH1474 - Pyrococcus horikoshii ...   494  e-139
pir||F72378 conserved hypothetical protein - Thermotoga maritima...   101  1e-20

>pir||C75111 hypothetical protein PAB0472 - Pyrococcus abyssi (strain Orsay)
           >gi|5458115|emb|CAB49604.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 267
           
 Score =  525 bits (1339), Expect = e-148
 Identities = 267/267 (100%), Positives = 267/267 (100%)

Query: 1   MRVGVSIYPHFIKEGKTLPSILAEVKIKNYDFVQIFPHALGLIKNGTVVESVLMEVETAL 60
           MRVGVSIYPHFIKEGKTLPSILAEVKIKNYDFVQIFPHALGLIKNGTVVESVLMEVETAL
Sbjct: 1   MRVGVSIYPHFIKEGKTLPSILAEVKIKNYDFVQIFPHALGLIKNGTVVESVLMEVETAL 60

Query: 61  KGVGIDYIVRMPVSLNLRDSIYYSRHFKVAKAVLDVAIKLGAKIIVMQSGKTGRLDLEID 120
           KGVGIDYIVRMPVSLNLRDSIYYSRHFKVAKAVLDVAIKLGAKIIVMQSGKTGRLDLEID
Sbjct: 61  KGVGIDYIVRMPVSLNLRDSIYYSRHFKVAKAVLDVAIKLGAKIIVMQSGKTGRLDLEID 120

Query: 121 AIRSLADTASKFGIKIALENTFSVKDTLYVIDNVDRENVGFALDVAHAFLSAQGDENKLL 180
           AIRSLADTASKFGIKIALENTFSVKDTLYVIDNVDRENVGFALDVAHAFLSAQGDENKLL
Sbjct: 121 AIRSLADTASKFGIKIALENTFSVKDTLYVIDNVDRENVGFALDVAHAFLSAQGDENKLL 180

Query: 181 EDVKLGIDKTILLLVHDNFGKMFPQVEPEDALAYGVGDLHLLPGDGKIPFGKVLRLFDDV 240
           EDVKLGIDKTILLLVHDNFGKMFPQVEPEDALAYGVGDLHLLPGDGKIPFGKVLRLFDDV
Sbjct: 181 EDVKLGIDKTILLLVHDNFGKMFPQVEPEDALAYGVGDLHLLPGDGKIPFGKVLRLFDDV 240

Query: 241 PILVKVKDPKIFSNLPPKAELVERLRR 267
           PILVKVKDPKIFSNLPPKAELVERLRR
Sbjct: 241 PILVKVKDPKIFSNLPPKAELVERLRR 267


>pir||E71022 hypothetical protein PH1474 - Pyrococcus horikoshii
           >gi|3257898|dbj|BAA30581.1| (AP000006) 267aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 267
           
 Score =  494 bits (1259), Expect = e-139
 Identities = 243/267 (91%), Positives = 261/267 (97%)

Query: 1   MRVGVSIYPHFIKEGKTLPSILAEVKIKNYDFVQIFPHALGLIKNGTVVESVLMEVETAL 60
           M+VGVSIYPHFIKEGKTLPSILA VKIK+YDFVQIFPHALGLI+NGTV+ES L EVE  L
Sbjct: 1   MKVGVSIYPHFIKEGKTLPSILANVKIKDYDFVQIFPHALGLIRNGTVIESALKEVEIVL 60

Query: 61  KGVGIDYIVRMPVSLNLRDSIYYSRHFKVAKAVLDVAIKLGAKIIVMQSGKTGRLDLEID 120
           KGVGIDYI+RMPVSLNLRDSIYYSRHFKVAKA+LDVAIKLGAKIIVMQSGKTGRLDLEID
Sbjct: 61  KGVGIDYIIRMPVSLNLRDSIYYSRHFKVAKAILDVAIKLGAKIIVMQSGKTGRLDLEID 120

Query: 121 AIRSLADTASKFGIKIALENTFSVKDTLYVIDNVDRENVGFALDVAHAFLSAQGDENKLL 180
           AIRSLADTA+KF IKIALENTFSVKDTLYVIDNV+R+NVGFALDVAHAFLSAQGDENKLL
Sbjct: 121 AIRSLADTANKFDIKIALENTFSVKDTLYVIDNVNRDNVGFALDVAHAFLSAQGDENKLL 180

Query: 181 EDVKLGIDKTILLLVHDNFGKMFPQVEPEDALAYGVGDLHLLPGDGKIPFGKVLRLFDDV 240
           EDVKLGI+KTILLLVHDNFGKMFPQVEPEDALAYGVGDLHLLPG+GKIPFGK+L+LFDDV
Sbjct: 181 EDVKLGIEKTILLLVHDNFGKMFPQVEPEDALAYGVGDLHLLPGEGKIPFGKILKLFDDV 240

Query: 241 PILVKVKDPKIFSNLPPKAELVERLRR 267
           PIL+KVKDPK+F+NLPPK+EL+ERLRR
Sbjct: 241 PILLKVKDPKVFANLPPKSELIERLRR 267


>pir||F72378 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4980928|gb|AAD35507.1|AE001721_6 (AE001721)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 304
           
 Score =  101 bits (249), Expect = 1e-20
 Identities = 76/249 (30%), Positives = 121/249 (48%), Gaps = 23/249 (9%)

Query: 16  KTLPSILAEVKIKNYDFVQIFPHALGLIKNGTVVESVLMEVETALKGVGIDYIVRMPVSL 75
           K L S L   K   +D+V+I    L +I  G ++   L  V+  L      Y V  P  +
Sbjct: 19  KRLVSELEFFKSIGFDYVEIPAAGLDVIARGRIIRKRLERVKELLSNYNFRYTVHAPDVI 78

Query: 76  NLRDSIYYSRHFKVAKAVLDVAIKLGAKIIVMQSGKTGR-LDL--------EIDAIRSLA 126
           NL+       H++V +A ++ A ++ A+++V   G+    +D+        EI A+R LA
Sbjct: 79  NLKIKTN-PWHYRVMEATIEFAGEINAEVVVYHYGEVDHSIDVPERVQRKAEIVALRELA 137

Query: 127 DTASKFGIKIALENT-FSVKDTLYVIDNVDRENVGFALDVAHAFLSAQGDENKLLEDVKL 185
           D A + G+ I +EN    V + L ++  V+  NV   +DV H F+ +        +++K 
Sbjct: 138 DLAKEKGVVIGVENVGHPVSEVLKLVRAVNHPNVKLVIDVGHLFIVSNYTGIDFYDELKK 197

Query: 186 GIDKTILLLVHDNFGKM------FPQVEPEDALAYGVGDLHLLPGDGKIPFGKVLRL--- 236
           G+   + L + DNFG+        P VE      YG+GDLHL  G+G IP+ KV R+   
Sbjct: 198 GLPYAVELHLSDNFGESPQTYQKIPDVEAF-RFVYGIGDLHLPIGEGDIPYNKVFRIIRE 256

Query: 237 --FDDVPIL 243
             FD + IL
Sbjct: 257 SGFDGIVIL 265


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.143    0.400 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93206972
Number of Sequences: 2977
Number of extensions: 3789708
Number of successful extensions: 8181
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8177
Number of HSP's gapped (non-prelim): 3
length of query: 267
length of database: 189,106,746
effective HSP length: 55
effective length of query: 212
effective length of database: 156,189,961
effective search space: 33112271732
effective search space used: 33112271732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)