BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0473 (PAB0473) DE:Hypothetical protein
         (119 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75111 hypothetical protein PAB0473 - Pyrococcus abyssi (st...   243  4e-64
pir||D71022 hypothetical protein PH1473 - Pyrococcus horikoshii ...   233  6e-61

>pir||D75111 hypothetical protein PAB0473 - Pyrococcus abyssi (strain Orsay)
           >gi|5458116|emb|CAB49605.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 119
           
 Score =  243 bits (615), Expect = 4e-64
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MPAREMRMEMFLRALLRRDFDKAKSHLEKLSKLVKDDEWGRGYLKAINGFMSAIKDNDSD 60
           MPAREMRMEMFLRALLRRDFDKAKSHLEKLSKLVKDDEWGRGYLKAINGFMSAIKDNDSD
Sbjct: 1   MPAREMRMEMFLRALLRRDFDKAKSHLEKLSKLVKDDEWGRGYLKAINGFMSAIKDNDSD 60

Query: 61  SLIFRLINNPDPKEIEGLLKRFEEIKEQEFRDDYERGYYTAWVELLQAYLSQSRLPVKR 119
           SLIFRLINNPDPKEIEGLLKRFEEIKEQEFRDDYERGYYTAWVELLQAYLSQSRLPVKR
Sbjct: 61  SLIFRLINNPDPKEIEGLLKRFEEIKEQEFRDDYERGYYTAWVELLQAYLSQSRLPVKR 119


>pir||D71022 hypothetical protein PH1473 - Pyrococcus horikoshii
           >gi|3257897|dbj|BAA30580.1| (AP000006) 119aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 119
           
 Score =  233 bits (588), Expect = 6e-61
 Identities = 112/119 (94%), Positives = 117/119 (98%)

Query: 1   MPAREMRMEMFLRALLRRDFDKAKSHLEKLSKLVKDDEWGRGYLKAINGFMSAIKDNDSD 60
           MPAREMRMEMFLRALLRRDFDKAKSHLEKLSKLVKDDEWGRGYLKAINGFMSAIKDND+D
Sbjct: 1   MPAREMRMEMFLRALLRRDFDKAKSHLEKLSKLVKDDEWGRGYLKAINGFMSAIKDNDND 60

Query: 61  SLIFRLINNPDPKEIEGLLKRFEEIKEQEFRDDYERGYYTAWVELLQAYLSQSRLPVKR 119
           SLIFRL+N+PDPKEIE LL RFEE+KEQEFRDDYERGYYTAWVELLQAYLSQ+RLPVKR
Sbjct: 61  SLIFRLLNDPDPKEIEELLNRFEEVKEQEFRDDYERGYYTAWVELLQAYLSQARLPVKR 119


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.139    0.400 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44092548
Number of Sequences: 2977
Number of extensions: 1704508
Number of successful extensions: 5629
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5627
Number of HSP's gapped (non-prelim): 2
length of query: 119
length of database: 189,106,746
effective HSP length: 52
effective length of query: 67
effective length of database: 157,985,422
effective search space: 10585023274
effective search space used: 10585023274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 160 (66.7 bits)