BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0474 (PAB0474) DE:Hypothetical protein
(196 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75111 hypothetical protein PAB0474 - Pyrococcus abyssi (st... 407 e-113
pir||C71022 hypothetical protein PH1472 - Pyrococcus horikoshii ... 361 4e-99
gb|AAK42437.1| DNA polymerase phage SPO1 N-terminal domain homol... 213 9e-55
gi|11499858 DNA polymerase, bacteriophage-type [Archaeoglobus fu... 203 1e-51
pir||E72736 probable DNA polymerase homologus protein APE0427 - ... 185 3e-46
pir||E72368 conserved hypothetical protein - Thermotoga maritima... 161 5e-39
pir||E70446 N-terminus of phage SPO1 DNA polymerase - Aquifex ae... 154 8e-37
pir||C71351 probable DNA polymerase, bacteriophage-type - syphil... 138 4e-32
gb|AAG20230.1| (AE005098) DNA polymerase bacteriophage-type; Pol... 125 3e-28
pir||E71646 hypothetical protein RP845 - Rickettsia prowazekii >... 125 4e-28
pir||D75359 DNA polymerase-related protein - Deinococcus radiodu... 114 9e-25
emb|CAB77286.1| (AL160312) putative DNA polymerase related prote... 101 9e-21
gb|AAD56917.1|AF180145_9 (AF180145) hypothetical protein; zm12or... 94 1e-18
pir||JC1269 DNA-directed DNA polymerase (EC 2.7.7.7) - phage SPO... 90 2e-17
sp|P30314|DPOL_BPSP1 DNA POLYMERASE 90 2e-17
gb|AAK42843.1| Conserved hypothetical protein [Sulfolobus solfat... 76 4e-13
gb|AAG19591.1| (AE005049) Vng1228c [Halobacterium sp. NRC-1] 73 2e-12
>pir||E75111 hypothetical protein PAB0474 - Pyrococcus abyssi (strain Orsay)
>gi|5458117|emb|CAB49606.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 196
Score = 407 bits (1034), Expect = e-113
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MASKEELMKKLEEKIRNCKKCPLWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFV 60
MASKEELMKKLEEKIRNCKKCPLWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFV
Sbjct: 1 MASKEELMKKLEEKIRNCKKCPLWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFV 60
Query: 61 GKAGKVLDELLKGIGLNRREVYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIRPRI 120
GKAGKVLDELLKGIGLNRREVYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIRPRI
Sbjct: 61 GKAGKVLDELLKGIGLNRREVYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIRPRI 120
Query: 121 IVTLGRFSMGYILRKYGFQVEPISKIHGKVFEARTLFGKVYIVPMYHPAVALYRPQLRKE 180
IVTLGRFSMGYILRKYGFQVEPISKIHGKVFEARTLFGKVYIVPMYHPAVALYRPQLRKE
Sbjct: 121 IVTLGRFSMGYILRKYGFQVEPISKIHGKVFEARTLFGKVYIVPMYHPAVALYRPQLRKE 180
Query: 181 LEEDFRKLKDLIEKVV 196
LEEDFRKLKDLIEKVV
Sbjct: 181 LEEDFRKLKDLIEKVV 196
>pir||C71022 hypothetical protein PH1472 - Pyrococcus horikoshii
>gi|3257896|dbj|BAA30579.1| (AP000006) 197aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 197
Score = 361 bits (916), Expect = 4e-99
Identities = 167/190 (87%), Positives = 180/190 (93%)
Query: 3 SKEELMKKLEEKIRNCKKCPLWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFVGK 62
SKEELMKKLEEKIR CKKCPLW++RTNPVPGDGSYD K+MFVGEAPGYWEDQ GLPFVGK
Sbjct: 6 SKEELMKKLEEKIRKCKKCPLWEVRTNPVPGDGSYDTKIMFVGEAPGYWEDQMGLPFVGK 65
Query: 63 AGKVLDELLKGIGLNRREVYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIRPRIIV 122
AGKVLDELLK IGL R EVYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDII+P++IV
Sbjct: 66 AGKVLDELLKLIGLKRSEVYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIKPKVIV 125
Query: 123 TLGRFSMGYILRKYGFQVEPISKIHGKVFEARTLFGKVYIVPMYHPAVALYRPQLRKELE 182
TLGRFS YI++KYGF VEPISKIHG+VFEARTLFGK+YIVPMYHPAVALYRPQLR+ELE
Sbjct: 126 TLGRFSTAYIMKKYGFNVEPISKIHGRVFEARTLFGKIYIVPMYHPAVALYRPQLRRELE 185
Query: 183 EDFRKLKDLI 192
EDF+KLK L+
Sbjct: 186 EDFKKLKSLL 195
>gb|AAK42437.1| DNA polymerase phage SPO1 N-terminal domain homolog [Sulfolobus
solfataricus]
Length = 216
Score = 213 bits (538), Expect = 9e-55
Identities = 98/183 (53%), Positives = 132/183 (71%), Gaps = 1/183 (0%)
Query: 11 LEEKIRNCKKCPLWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFVGKAGKVLDEL 70
+ +++R C+KC LW+ R N VPG+G+ A++MF+GEAPG ED +G PFVG AGK+L L
Sbjct: 7 IADEVRKCQKCKLWKFRKNAVPGEGNSKAEIMFIGEAPGENEDIEGKPFVGVAGKLLTRL 66
Query: 71 LKGI-GLNRREVYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIRPRIIVTLGRFSM 129
+ I GL+R +V+ITN+VKCRPPNNRDP E+EI AC+PYL QI+ IRP II+TLGR S
Sbjct: 67 INEILGLSREDVFITNLVKCRPPNNRDPEEDEILACSPYLTRQIESIRPHIIITLGRHST 126
Query: 130 GYILRKYGFQVEPISKIHGKVFEARTLFGKVYIVPMYHPAVALYRPQLRKELEEDFRKLK 189
Y+ +K ++E I K+ GK + K+ + P YHPA ALY P +RK LEEDFRK+K
Sbjct: 127 SYLFKKMNMKMESIGKVRGKFYTWNIYGYKILVFPTYHPAAALYNPPIRKVLEEDFRKVK 186
Query: 190 DLI 192
+ +
Sbjct: 187 EAL 189
>gi|11499858 DNA polymerase, bacteriophage-type [Archaeoglobus fulgidus]
>gi|7451742|pir||E69534 DNA polymerase,
bacteriophage-type homolog - Archaeoglobus fulgidus
>gi|2648243|gb|AAB88977.1| (AE000947) DNA polymerase,
bacteriophage-type [Archaeoglobus fulgidus]
Length = 199
Score = 203 bits (512), Expect = 1e-51
Identities = 95/189 (50%), Positives = 131/189 (69%)
Query: 6 ELMKKLEEKIRNCKKCPLWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFVGKAGK 65
E + + +I +C+KC L + +TN VPG G+ A+++FVGEAPG ED +G PFVG AGK
Sbjct: 2 ESLDDIVREIMSCRKCDLHKTKTNYVPGVGNEKAEIVFVGEAPGRDEDLKGEPFVGAAGK 61
Query: 66 VLDELLKGIGLNRREVYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIRPRIIVTLG 125
+L E+L IGL R +VYITN++KCRPPNNRDPT EE++ C YL Q++ IRP +IV LG
Sbjct: 62 LLTEMLASIGLRREDVYITNVLKCRPPNNRDPTPEEVEKCGDYLVRQLEAIRPNVIVCLG 121
Query: 126 RFSMGYILRKYGFQVEPISKIHGKVFEARTLFGKVYIVPMYHPAVALYRPQLRKELEEDF 185
RF+ +I + + IS++ GKV+E KV ++ +YHPA LYRPQLR+E E DF
Sbjct: 122 RFAAQFIFNLFDLEFTTISRVKGKVYEVERWGKKVKVIAIYHPAAVLYRPQLREEYESDF 181
Query: 186 RKLKDLIEK 194
+K+ +L K
Sbjct: 182 KKIGELCGK 190
>pir||E72736 probable DNA polymerase homologus protein APE0427 - Aeropyrum
pernix (strain K1) >gi|5104069|dbj|BAA79385.1|
(AP000059) 215aa long hypothetical DNA polymerase
homologus protein [Aeropyrum pernix]
Length = 215
Score = 185 bits (465), Expect = 3e-46
Identities = 91/171 (53%), Positives = 117/171 (68%)
Query: 15 IRNCKKCPLWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFVGKAGKVLDELLKGI 74
+R C +CPL RT+ VPG+G +A VM VGEAPG ED+ G PFVG AGK+LD LL+
Sbjct: 1 MRRCTRCPLHATRTHAVPGEGPGEAGVMVVGEAPGRMEDRLGRPFVGPAGKLLDSLLELA 60
Query: 75 GLNRREVYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIRPRIIVTLGRFSMGYILR 134
GL+R EVYITN+VKCRPP NRDP EEEI+AC PYL QI +IRPR+++ +GR + + R
Sbjct: 61 GLSRGEVYITNVVKCRPPGNRDPREEEIEACLPYLVEQISLIRPRLVIAVGRHAGRTLFR 120
Query: 135 KYGFQVEPISKIHGKVFEARTLFGKVYIVPMYHPAVALYRPQLRKELEEDF 185
G + +++ G+V+ R ++ I YHPA ALY P LR ELE DF
Sbjct: 121 LAGLRWPGLARARGRVWRGRIGGVELLIAVTYHPAAALYNPGLRGELERDF 171
>pir||E72368 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981023|gb|AAD35596.1|AE001727_8 (AE001727)
conserved hypothetical protein [Thermotoga maritima]
Length = 192
Score = 161 bits (404), Expect = 5e-39
Identities = 86/196 (43%), Positives = 124/196 (62%), Gaps = 8/196 (4%)
Query: 1 MASKEELMKKLEEKIRNCKKCPLWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFV 60
M ++EELM+ + E+++ C CPL RTN V G+G+ D +++FVGE PG ED+ G PFV
Sbjct: 1 MYTREELMEIVSERVKKCTACPLHLNRTNVVVGEGNLDTRIVFVGEGPGEEEDKTGRPFV 60
Query: 61 GKAGKVLDELLKGIGLNRREVYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIRPRI 120
G+AG +L ELL+ G+ R +VYI N+VKCRPPNNR PT EE AC +L AQI+II P +
Sbjct: 61 GRAGMLLTELLRESGIRREDVYICNVVKCRPPNNRTPTPEEQAACGHFLLAQIEIINPDV 120
Query: 121 IVTLGRFSMGYILRKYGFQVEPISKIHGKVFEARTLFGKVYIVPMYHPAVALYR--PQLR 178
IV LG ++ + + G +V I+K+ G + G ++P +HP+ L +LR
Sbjct: 121 IVALGATALSFFVD--GKKVS-ITKVRGNPID---WLGGKKVIPTFHPSYLLRNRSNELR 174
Query: 179 KELEEDFRKLKDLIEK 194
+ + ED K K I+K
Sbjct: 175 RIVLEDIEKAKSFIKK 190
>pir||E70446 N-terminus of phage SPO1 DNA polymerase - Aquifex aeolicus
>gi|2984015|gb|AAC07559.1| (AE000751) N-terminus of
phage SPO1 DNA polymerase [Aquifex aeolicus]
Length = 195
Score = 154 bits (385), Expect = 8e-37
Identities = 82/187 (43%), Positives = 122/187 (64%), Gaps = 6/187 (3%)
Query: 7 LMKKLEEKIRNCKKCPLWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFVGKAGKV 66
L+K L E+ ++C +C L + RT VPGDG+ + ++FVGEAPG ED+QG PFVG+AG++
Sbjct: 11 LLKNLYEEWKDCTRCDLHKSRTRVVPGDGNPYSLLVFVGEAPGEEEDRQGKPFVGRAGQL 70
Query: 67 LDELLKGI-GLNRREVYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIRPRIIVTLG 125
L+ L++ + G+ R +VYITN+ KCRPP NR PT E++AC PYL +I+II+P++I LG
Sbjct: 71 LNRLIEEVLGMKREDVYITNVCKCRPPQNRKPTPIEMRACFPYLKKEIEIIQPKVICCLG 130
Query: 126 RFSMGYILRKYGFQVEPISKIHGKVFEARTLFGKVYIVPMYHPAVALYRPQLRKELEEDF 185
+ IL K I+K+ G+VF ++ + YHPA L P+ + +DF
Sbjct: 131 ATAGEGILGK----SLRITKVRGQVF-PYPYNPRIKVFLTYHPAYVLRNPKEETTIIKDF 185
Query: 186 RKLKDLI 192
KLK+L+
Sbjct: 186 EKLKELL 192
>pir||C71351 probable DNA polymerase, bacteriophage-type - syphilis spirochete
>gi|3322496|gb|AAC65215.1| (AE001204) DNA polymerase,
bacteriophage-type [Treponema pallidum]
Length = 277
Score = 138 bits (345), Expect = 4e-32
Identities = 74/180 (41%), Positives = 109/180 (60%), Gaps = 9/180 (5%)
Query: 11 LEEKIRNCKKCPLWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFVGKAGKVLDEL 70
L E+I C+ C L+Q RT+ V G+G DA V+ VGEAPG ED+ G PFVG++GK+LD +
Sbjct: 92 LREEIFACRACELYQRRTHAVVGEGVADADVLVVGEAPGAEEDRSGRPFVGRSGKLLDAM 151
Query: 71 LKGIGLNRRE-VYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIRPRIIVTLGRFSM 129
L IGL+R++ YITN+VKCRPP NR PT E CA +L A + + RP I+ LGR +
Sbjct: 152 LAAIGLSRQQNCYITNVVKCRPPRNRTPTPHETACCARFLHAHLTLHRPCAILVLGRCAA 211
Query: 130 GYILRKYGFQVEPISKIHGKVFEARTLFGKVYIVPMYHPAVALYRPQLRKELEEDFRKLK 189
++L+ + I K+ G+ F + + ++ YHP+ L L++ ED + +
Sbjct: 212 QHMLQ----TTDGIGKLRGRFF----TYQGIPLLATYHPSALLRDEALKRPAWEDLKTFR 263
>gb|AAG20230.1| (AE005098) DNA polymerase bacteriophage-type; PolC [Halobacterium
sp. NRC-1]
Length = 203
Score = 125 bits (312), Expect = 3e-28
Identities = 73/172 (42%), Positives = 102/172 (58%), Gaps = 11/172 (6%)
Query: 18 CKKCP-LWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFVGKAGKVLDELLKGIGL 76
C +C L + R+ V GDG DA V+F+GEAPG ED G+PFVG++G VLD+ L GL
Sbjct: 20 CTRCDALVESRSQVVNGDGPSDADVLFIGEAPGATEDDTGVPFVGRSGDVLDDELAAAGL 79
Query: 77 NRREVYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIRPRIIVTLGRFSMGYILRKY 136
R +V ITN V+CRPP+NRDP EE+ C +L A++D + P +IVTLG+ ++L +
Sbjct: 80 AREDVRITNCVRCRPPDNRDPHSEELANCRSHLVAEVDSVDPAVIVTLGKVPSEHVLER- 138
Query: 137 GFQVEPISKIHGKVFEARTLFGKVY-IVPMYHPAVALY----RPQLRKELEE 183
++ G V E +L G +V HPA LY RP R+ +E+
Sbjct: 139 ---SVAVTGEAGSV-ERVSLGGTTRDVVVCLHPAATLYDASQRPAFRETIEQ 186
>pir||E71646 hypothetical protein RP845 - Rickettsia prowazekii
>gi|3861370|emb|CAA15269.1| (AJ235273) unknown
[Rickettsia prowazekii]
Length = 258
Score = 125 bits (311), Expect = 4e-28
Identities = 66/194 (34%), Positives = 109/194 (56%), Gaps = 6/194 (3%)
Query: 1 MASKEELMKKLEEKIRNCKKCPLWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFV 60
+A K + +L E + N C L + TN V GDG+ A +M +GEAPG ED +G+PF
Sbjct: 62 LADKANNIVELRESLLNFNGCELKKFATNTVFGDGNPQANIMLIGEAPGNTEDLKGIPFC 121
Query: 61 GKAGKVLDELLKGIGLNRREVYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIRPRI 120
G++G +LD +L IG++R YITN+V RPP NR PT EE+ C P+++ I +I P++
Sbjct: 122 GESGNLLDNMLYAIGISRNNFYITNMVFWRPPANRQPTLEEVDICRPFVEKHIALINPKL 181
Query: 121 IVTLGRFSMGYILRKYGFQVEPISKIHGK--VFEARTLFGKVYIVPMYHPAVALYRPQLR 178
++ +G + +L K I+KI + + + + + ++HPA L +P +
Sbjct: 182 LILVGSTAATSLLGKNAC----ITKIRQEYYFYTNKYISTPIQTTAIFHPAYLLRQPMQK 237
Query: 179 KELEEDFRKLKDLI 192
+ D K+K+ +
Sbjct: 238 RTSWYDLLKIKEYL 251
>pir||D75359 DNA polymerase-related protein - Deinococcus radiodurans (strain
R1) >gi|6459521|gb|AAF11304.1|AE002016_6 (AE002016) DNA
polymerase-related protein [Deinococcus radiodurans]
Length = 237
Score = 114 bits (282), Expect = 9e-25
Identities = 62/168 (36%), Positives = 93/168 (54%), Gaps = 7/168 (4%)
Query: 11 LEEKIRNCKKCPLWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFVGKAGKVLDEL 70
LE++ R C CPL + V DG A ++ VGE PG ED+ G PFVG+AG++LD +
Sbjct: 27 LEDRNRGCAACPLRVSASQVVVSDGDPRAPLLIVGEGPGAEEDRDGRPFVGQAGQLLDRI 86
Query: 71 LKGIGLNRREVYITNIVKCRPPNNRDPTEEEIKACAP-YLDAQIDIIRPRIIVTLGRFSM 129
L L R E Y+TN+ KCR PNNR P E C +L+ Q+ ++RPR++++LG +
Sbjct: 87 LAAASLAREEAYLTNVTKCRAPNNRTPLPLETATCTGLWLEPQLALLRPRVVLSLGNTAT 146
Query: 130 GYILRKYGFQVEPISKIHGKVFEAR--TLFGKVYIVPMYHPAVALYRP 175
++L I+++ G+ F R ++P+ HPA L P
Sbjct: 147 QFLLG----TPRGITRLRGQWFTYRHPAWPQPALLMPLLHPAYLLRNP 190
>emb|CAB77286.1| (AL160312) putative DNA polymerase related protein [Streptomyces
coelicolor A3(2)]
Length = 212
Score = 101 bits (248), Expect = 9e-21
Identities = 64/164 (39%), Positives = 84/164 (51%), Gaps = 13/164 (7%)
Query: 18 CKKCPLWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFVGKAGKVLDELLKGIGLN 77
C+ CPL + T V G G A+VM VGE PG ED+QG PFVG AG +LD L GL+
Sbjct: 29 CRGCPLHRDATQTVFGAGKASARVMLVGEQPGDQEDRQGKPFVGPAGHLLDRALAEAGLD 88
Query: 78 RREVYITNIVK------CRPPNNR---DPTEEEIKACAPYLDAQIDIIRPRIIVTLGRFS 128
+ Y+TN VK P R PT E AC P+L A++D + P +IV LG +
Sbjct: 89 PADAYVTNAVKHFKFTRAEPRKRRIHKAPTLRETAACGPWLAAELDRVEPELIVVLGA-T 147
Query: 129 MGYILRKYGFQVEPISKIHGKVFEARTLFGKVYIVPMYHPAVAL 172
G L F+V +++ G V E +VP HP+ L
Sbjct: 148 AGKALLGSSFRV---TRVRGTVLEEEIHGRPQRLVPTVHPSAVL 188
>gb|AAD56917.1|AF180145_9 (AF180145) hypothetical protein; zm12orf4 [Zymomonas mobilis]
Length = 206
Score = 94.0 bits (230), Expect = 1e-18
Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 17/171 (9%)
Query: 11 LEEKIRNCKKCPLWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFVGKAGKVLDEL 70
L E + +C C L+Q T V G+GS+ + V+FVGE PG ED G PFVG AG+V DE+
Sbjct: 15 LTEALHHCHSCALYQKATQVVCGEGSHTSPVIFVGEQPGDQEDLAGRPFVGPAGQVFDEV 74
Query: 71 LKGIGLNRREVYITNIV-------KCRPPNNRDPTEEEIKACAPYLDAQIDIIRPRIIVT 123
+ IG R E+Y+TN V K ++ P EE+ C +L + +++PR+ +
Sbjct: 75 MASIGWPREEIYLTNAVKHFKFWLKGERRIHQTPAPEEVDCCRYWLRQEWRLLKPRLTIA 134
Query: 124 LGRFSMGYILRKYGFQVEPISKIHGKVFEARTLFGKVY--IVPMYHPAVAL 172
LG G + + + + + GK+ GK + YHP+ L
Sbjct: 135 LG----GTAVLALTGKKQTLGSLRGKIL----TLGKAAAPFIVTYHPSYIL 177
>pir||JC1269 DNA-directed DNA polymerase (EC 2.7.7.7) - phage SPO1
>gi|216114|gb|AAA03732.1| (M84415) DNA polymerase
[Bacteriophage SPO1]
Length = 924
Score = 89.7 bits (219), Expect = 2e-17
Identities = 58/172 (33%), Positives = 94/172 (53%), Gaps = 10/172 (5%)
Query: 23 LWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFVGKAGKVLDELLKGIGLNRRE-V 81
L + P+ G GS A+++ V E P +E ++ GKAGK+L L +G++ E V
Sbjct: 8 LKEFNPKPMKGQGSKKARIIIVQENPFDYEYRKKKYMTGKAGKLLKFGLAEVGIDPDEDV 67
Query: 82 YITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIRPRIIVTLGRFSMGYILRKYGFQVE 141
Y T+IVK P NR PT +EIK Y+ A+I++I P II+ G S+ ++ + +
Sbjct: 68 YYTSIVKYPTPENRLPTPDEIKESMDYMWAEIEVIDPDIIIPTGNLSLKFLTK-----MT 122
Query: 142 PISKIHGKVFEARTLFGKVYIVPMYHPAVALYRPQLRKELEEDFRKLKDLIE 193
I+K+ GK++E + G+ + PM HP L +P+ + +D L L+E
Sbjct: 123 AITKVRGKLYE---IEGRKFF-PMIHPNTVLKQPKYQDFFIKDLEILASLLE 170
>sp|P30314|DPOL_BPSP1 DNA POLYMERASE
Length = 924
Score = 89.7 bits (219), Expect = 2e-17
Identities = 58/172 (33%), Positives = 94/172 (53%), Gaps = 10/172 (5%)
Query: 23 LWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFVGKAGKVLDELLKGIGLNRRE-V 81
L + P+ G GS A+++ V E P +E ++ GKAGK+L L +G++ E V
Sbjct: 8 LKEFNPKPMKGQGSKKARIIIVQENPFDYEYRKKKYMTGKAGKLLKFGLAEVGIDPDEDV 67
Query: 82 YITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIRPRIIVTLGRFSMGYILRKYGFQVE 141
Y T+IVK P NR PT +EIK Y+ A+I++I P II+ G S+ ++ + +
Sbjct: 68 YYTSIVKYPTPENRLPTPDEIKESMDYMWAEIEVIDPDIIIPTGNLSLKFLTK-----MT 122
Query: 142 PISKIHGKVFEARTLFGKVYIVPMYHPAVALYRPQLRKELEEDFRKLKDLIE 193
I+K+ GK++E + G+ + PM HP L +P+ + +D L L+E
Sbjct: 123 AITKVRGKLYE---IEGRKFF-PMIHPNTVLKQPKYQDFFIKDLEILASLLE 170
>gb|AAK42843.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 219
Score = 75.7 bits (183), Expect = 4e-13
Identities = 55/191 (28%), Positives = 97/191 (49%), Gaps = 30/191 (15%)
Query: 8 MKKLEEKIRNCKKCP-LWQLRTN--------PVPGDGSYDAKVMFVGEAP-GYWEDQQGL 57
M+ ++ C KCP L Q R + PVP +G DA+++ VG AP G ++ G
Sbjct: 1 MENFISRLIACDKCPRLTQYRKSFPDNYWKKPVPPNGQIDAEIVIVGLAPAGNGGNRTGR 60
Query: 58 PFVG-KAGKVLDELLKGIGLNRR-------------EVYITNIVKCRPPNNRDPTEEEIK 103
F G ++ L L +GL+ + VYIT+ VKC PP N+ P ++EI
Sbjct: 61 MFTGDESSNNLANALYAVGLSNQPFSVSKDDGLKLFNVYITSAVKCAPPQNK-PNKDEII 119
Query: 104 ACAPYLDAQIDIIR-PRIIVTLGRF---SMGYILRKYGFQVEPISKIHGKVFE-ARTLFG 158
C+ +L+ ++ I++ ++ + LG+ S+ Y+ +K G+ V + HG + + +
Sbjct: 120 NCSVFLEEEVRILKNTKVYIALGKIAWDSLIYVFKKIGYNVPNVRFYHGALVKVVKPDMS 179
Query: 159 KVYIVPMYHPA 169
+++V YHP+
Sbjct: 180 IIWLVGSYHPS 190
>gb|AAG19591.1| (AE005049) Vng1228c [Halobacterium sp. NRC-1]
Length = 210
Score = 73.4 bits (177), Expect = 2e-12
Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 21/172 (12%)
Query: 11 LEEKIRNCKKCPLWQLRTNPVPGDGSYDAKVMFVGEAPGYWEDQQGLPFVGK-AGKVLDE 69
++E RNC L R V G G A +FV E+P + G+P VG AG+
Sbjct: 14 MDEDCRNC--AGLCDQRERVVHGYGDVGADFVFVAESPSAASEAAGVPLVGDDAGERFQH 71
Query: 70 LLKGIGLNRR----------EVYITNIVKCRPPNNRDPTEEEIKACAPYLDAQIDIIRPR 119
+L +GLN Y+T + +CR P+ R+ T +E C PYL+A I +I P
Sbjct: 72 ILGSVGLNHSLPSSTEPELANAYVTLLSRCRHPD-REATADERTRCEPYLNADIRMINPE 130
Query: 120 IIVTLGRFSMGYILRKYGFQVE---PISKIHGKVFEARTLFGKVYIVPMYHP 168
++V +G+ ++ + ++Y ++++HG R +VPM HP
Sbjct: 131 VLVPVGQRALTELGKEYTTTPADSLAVTELHGDTVRGRGF----ELVPMIHP 178
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.143 0.430
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80136584
Number of Sequences: 2977
Number of extensions: 3517421
Number of successful extensions: 6936
Number of sequences better than 1.0e-10: 17
Number of HSP's better than 0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6909
Number of HSP's gapped (non-prelim): 17
length of query: 196
length of database: 189,106,746
effective HSP length: 50
effective length of query: 146
effective length of database: 159,182,396
effective search space: 23240629816
effective search space used: 23240629816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)