BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0475 (PAB0475) DE:Hypothetical protein
(239 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75111 hypothetical protein PAB0475 - Pyrococcus abyssi (st... 462 e-129
pir||B71022 hypothetical protein PH1471 - Pyrococcus horikoshii ... 441 e-123
sp|Q58940|YF45_METJA HYPOTHETICAL PROTEIN MJ1545 >gi|2128926|pir... 230 1e-59
pir||C72776 hypothetical protein APE0197 - Aeropyrum pernix (str... 211 7e-54
emb|CAC12406.1| (AL445067) conserved hypothetical protein [Therm... 210 2e-53
gi|11499990 conserved hypothetical protein [Archaeoglobus fulgid... 206 1e-52
gb|AAK40714.1| Conserved hypothetical protein [Sulfolobus solfat... 195 5e-49
gb|AAG19879.1| (AE005072) Vng1616c [Halobacterium sp. NRC-1] 183 2e-45
>pir||F75111 hypothetical protein PAB0475 - Pyrococcus abyssi (strain Orsay)
>gi|5458118|emb|CAB49607.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 239
Score = 462 bits (1177), Expect = e-129
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 MLEKEKEILAKRIAGEIVLSPDPGKTMRKWREIFGISQTELADYLGVSSSVISDYEGGRR 60
MLEKEKEILAKRIAGEIVLSPDPGKTMRKWREIFGISQTELADYLGVSSSVISDYEGGRR
Sbjct: 1 MLEKEKEILAKRIAGEIVLSPDPGKTMRKWREIFGISQTELADYLGVSSSVISDYEGGRR 60
Query: 61 KSPGASTIRKFVEALIEIDEKRGGNVIKAFSRTLGSEIPTNAILDIREFDIPVTVKDVVE 120
KSPGASTIRKFVEALIEIDEKRGGNVIKAFSRTLGSEIPTNAILDIREFDIPVTVKDVVE
Sbjct: 61 KSPGASTIRKFVEALIEIDEKRGGNVIKAFSRTLGSEIPTNAILDIREFDIPVTVKDVVE 120
Query: 121 AVRGEIVANPDLVDRRIYGYTVVDSIQAILEMSAEEFLKLYGWTTERALVFTKVTTGRSP 180
AVRGEIVANPDLVDRRIYGYTVVDSIQAILEMSAEEFLKLYGWTTERALVFTKVTTGRSP
Sbjct: 121 AVRGEIVANPDLVDRRIYGYTVVDSIQAILEMSAEEFLKLYGWTTERALVFTKVTTGRSP 180
Query: 181 MIAVRVQGLKPAMVVLHGVKRLDELAVKIAEKERVPLVVSRAENETELIAGLRKLVGSF 239
MIAVRVQGLKPAMVVLHGVKRLDELAVKIAEKERVPLVVSRAENETELIAGLRKLVGSF
Sbjct: 181 MIAVRVQGLKPAMVVLHGVKRLDELAVKIAEKERVPLVVSRAENETELIAGLRKLVGSF 239
>pir||B71022 hypothetical protein PH1471 - Pyrococcus horikoshii
>gi|3257895|dbj|BAA30578.1| (AP000006) 244aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 244
Score = 441 bits (1123), Expect = e-123
Identities = 225/238 (94%), Positives = 233/238 (97%)
Query: 1 MLEKEKEILAKRIAGEIVLSPDPGKTMRKWREIFGISQTELADYLGVSSSVISDYEGGRR 60
M EKEKEILAKRIAGEIVLSPDPGKTMRKWREIFGISQTELADYLGVSSSVISDYEGGRR
Sbjct: 6 MFEKEKEILAKRIAGEIVLSPDPGKTMRKWREIFGISQTELADYLGVSSSVISDYEGGRR 65
Query: 61 KSPGASTIRKFVEALIEIDEKRGGNVIKAFSRTLGSEIPTNAILDIREFDIPVTVKDVVE 120
KSPGASTIRKFVEALIEIDEKRGGNVIKAFSRT SEIPT+AILDIREFDIPVTVKD+V+
Sbjct: 66 KSPGASTIRKFVEALIEIDEKRGGNVIKAFSRTFSSEIPTSAILDIREFDIPVTVKDIVD 125
Query: 121 AVRGEIVANPDLVDRRIYGYTVVDSIQAILEMSAEEFLKLYGWTTERALVFTKVTTGRSP 180
AV+GEIVANPDL+DR+IYGYTVVDSIQAILEMSAEEFLKLYGWTTERALVFTKVTTGRSP
Sbjct: 126 AVKGEIVANPDLIDRKIYGYTVVDSIQAILEMSAEEFLKLYGWTTERALVFTKVTTGRSP 185
Query: 181 MIAVRVQGLKPAMVVLHGVKRLDELAVKIAEKERVPLVVSRAENETELIAGLRKLVGS 238
MIAVRVQGLKPAMVVLHGVKRLDELAVKIAEKERVPLVVS+AENETELI GLR+LV S
Sbjct: 186 MIAVRVQGLKPAMVVLHGVKRLDELAVKIAEKERVPLVVSKAENETELITGLRRLVTS 243
>sp|Q58940|YF45_METJA HYPOTHETICAL PROTEIN MJ1545 >gi|2128926|pir||H64492 hypothetical
protein MJ1545 - Methanococcus jannaschii
>gi|1592176|gb|AAB99563.1| (U67595) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 241
Score = 230 bits (581), Expect = 1e-59
Identities = 120/231 (51%), Positives = 164/231 (70%), Gaps = 4/231 (1%)
Query: 7 EILAKRIAGEIVLSPDPGKTMRKWREIFGISQTELADYLGVSSSVISDYEGGRRKSPGAS 66
E +A I G+IVL+ + GK ++KWR +F I Q ELA YL VS SVISDYE GRRK+PG +
Sbjct: 12 EKVAIYIIGDIVLAENTGKALKKWRNLFNIQQIELAKYLNVSPSVISDYEVGRRKNPGVN 71
Query: 67 TIRKFVEALIEIDEKRGGNVIKAFSRTLGSEIPTNAILDIREFDIPVTVKDVVEAVRGEI 126
I+K+V ALIEID+++GG IKA R L AIL I+E++ P+T+ + V + GEI
Sbjct: 72 IIKKYVLALIEIDKEKGGQTIKALKRILDKSPSMKAILSIKEYENPITLNEFVNIIDGEI 131
Query: 127 VANPDLVDRRIYGYTVVDSIQAILEMSAEEFLKLYGWTTERALVFTKVTTGRSPMIAVRV 186
D D IYG+TVVDSI+AILEM+ ++F LYGWTTERAL+FT V+TGRSPM+AVRV
Sbjct: 132 AVG-DNSDTPIYGHTVVDSIKAILEMTGDDFYHLYGWTTERALIFTNVSTGRSPMVAVRV 190
Query: 187 QGLKPAMVVLHGVK--RLDELAVKIAEKERVPLVVSRAENETELIAGLRKL 235
+KP +VVL G+ ++D LA+K+AE + +PL+ + + + ELI L ++
Sbjct: 191 SIMKPRVVVLQGINKDKIDSLALKLAEIDNIPLITTHLDTK-ELIKRLNEI 240
>pir||C72776 hypothetical protein APE0197 - Aeropyrum pernix (strain K1)
>gi|5103588|dbj|BAA79109.1| (AP000058) 243aa long
hypothetical protein [Aeropyrum pernix]
Length = 243
Score = 211 bits (531), Expect = 7e-54
Identities = 116/229 (50%), Positives = 165/229 (71%), Gaps = 5/229 (2%)
Query: 8 ILAKRIAGEIVLSPDPGKTMRKWREIFGISQTELADYLGVSSSVISDYEGGRRKSPGAST 67
++A RIAG+I+ S D G+ +RKWRE F +SQ+E+A +GV++SVISDYE RR +PGA
Sbjct: 9 LVAIRIAGDIIYSRDFGEALRKWREYFEVSQSEIAREMGVTASVISDYEKSRR-TPGAVF 67
Query: 68 IRKFVEALIEIDEKRGGNVIKAFSRTLGSEIPTNAILDIREFDIPVTVKDVVEAVRGEIV 127
I++FV++LI ID KRG K + G+ +P AI+D+REF+ P+TV ++ V G I+
Sbjct: 68 IKRFVDSLISIDAKRGWKKTKDLAMLAGT-VP-GAIVDMREFEKPLTVGELSSVVEGVIL 125
Query: 128 ANPDLVDRRIYGYTVVDSIQAILEMSAEEFLKLYGWTTERALVFTKVTTGRSPMIAVRVQ 187
D R +YGYT+VDS++AIL +S +F L+G +RA+VFTK TTGRSPM+AVR
Sbjct: 126 GFKDAA-RSVYGYTLVDSVKAILSLSGLQFTVLFGLNPQRAIVFTKSTTGRSPMVAVRTS 184
Query: 188 GLKPAMVVLHGVKR-LDELAVKIAEKERVPLVVSRAENETELIAGLRKL 235
LKPA+V++HG R +D LA++IA+ +RVPLVVS+ ++E EL + LR L
Sbjct: 185 PLKPAVVIVHGPGRNVDRLAIEIAKADRVPLVVSQLDSEEELASRLRSL 233
>emb|CAC12406.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 241
Score = 210 bits (528), Expect = 2e-53
Identities = 109/218 (50%), Positives = 154/218 (70%), Gaps = 5/218 (2%)
Query: 9 LAKRIAGEIVLSPDPGKTMRKWREIFGISQTELADYLGVSSSVISDYEGGRRKSPGASTI 68
L ++IAGEI LS P +T+RKWRE F ISQ EL+++L S SVISDYE GRRK P +++
Sbjct: 20 LREKIAGEITLSDSPAETIRKWREEFKISQHELSNFLHQSPSVISDYETGRRKFPSIASV 79
Query: 69 RKFVEALIEIDEKRGGNVIKAFSRTLGSEIPTNAILDIREFDIPVTVKDVVEAVRGEIVA 128
RK V+ALI IDE+RGG +IK + S +P+ A++DI+++D V ++ ++A+ G V+
Sbjct: 80 RKIVDALITIDERRGGYIIKKYK----SGVPSEALIDIKDYDRDVPLERAIKAINGTNVS 135
Query: 129 NPDLVDRRIYGYTVVDSIQAILEMSAEEFLKLYGWTTERALVFTKVTTGRSPMIAVRVQG 188
+ +DR I GYT+VD ++AIL S E+ +LYGW++ERA+ FT V GRSPMIA+RV
Sbjct: 136 HVS-IDRDIRGYTIVDGVKAILAFSYYEYSRLYGWSSERAIFFTDVKFGRSPMIAIRVHP 194
Query: 189 LKPAMVVLHGVKRLDELAVKIAEKERVPLVVSRAENET 226
LKPA VV +DELA+K+A+ E +PL+V+ ET
Sbjct: 195 LKPAAVVYIQPDNVDELAIKLADIENIPLLVTDMSPET 232
>gi|11499990 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3183466|sp|O30257|YO14_ARCFU HYPOTHETICAL PROTEIN
AF2414 >gi|7483255|pir||G69551 conserved hypothetical
protein AF2414 - Archaeoglobus fulgidus
>gi|2650680|gb|AAB91252.1| (AE001109) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 229
Score = 206 bits (520), Expect = 1e-52
Identities = 111/214 (51%), Positives = 156/214 (72%), Gaps = 8/214 (3%)
Query: 9 LAKRIAGEIVLSPDPGKTMRKWREIFGISQTELADYLGVSSSVISDYEGGRRKSPGASTI 68
+A+RI G+IVLS + G+ +RKWR IF SQ++LA LG+S SVISDYE GRRK PG + +
Sbjct: 6 VAERICGDIVLSENSGEALRKWRSIFNASQSDLARKLGISPSVISDYESGRRK-PGTAFL 64
Query: 69 RKFVEALIEIDEKRGGNVIKAFSRTLGSEIPTNAILDIREFDIPVTVKDVVEAVRGEIVA 128
+KFV ALIE+D +RG V+ + L S+ A+LDI E+ + E + G+++
Sbjct: 65 KKFVCALIELDGERGYQVLSKYRYFLESD--HKAVLDIAEYQKTAEPSEFCEVIEGKMLT 122
Query: 129 NPDLVDRRIYGYTVVDSIQAILEMSAEEFLKLYGWTTERALVFTKVTTGRSPMIAVRVQG 188
+ D+ I+G+TV+DSI AIL ++A +F +LYG T+ERAL+FT+V+TGRSPM+AVRV
Sbjct: 123 H---FDKAIHGHTVIDSINAILSLNAFDFYRLYGLTSERALIFTRVSTGRSPMVAVRVSN 179
Query: 189 LKPAMVVLHGV--KRLDELAVKIAEKERVPLVVS 220
LKP+ VVLHG+ +R+DE+A KIAE ER+PLVV+
Sbjct: 180 LKPSAVVLHGLEAERVDEMAKKIAEIERIPLVVT 213
>gb|AAK40714.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 246
Score = 195 bits (490), Expect = 5e-49
Identities = 100/230 (43%), Positives = 155/230 (66%), Gaps = 4/230 (1%)
Query: 7 EILAKRIAGEIVLSPDPGKTMRKWREIFGISQTELADYLGVSSSVISDYEGGRRKSPGAS 66
E + KRI+G+IV S D ++RKWRE+F +SQ ELA +G+ SVI+DYE GRR++ G+
Sbjct: 18 ETIGKRISGDIVWSKDISGSLRKWREMFNVSQGELAREMGIKQSVIADYERGRRQA-GSE 76
Query: 67 TIRKFVEALIEIDEKRGGNVIKAFSRTLGSEIPTNAILDIREFDIPVTVKDVVEAVRGEI 126
I+++V ALI ID +RG V+K ++ G P I+D+R+F+ P+ + ++ AV G +
Sbjct: 77 FIKRYVSALISIDARRGYKVVKELAKMFGINFPF--IVDMRDFNSPICIDKLIRAVDG-V 133
Query: 127 VANPDLVDRRIYGYTVVDSIQAILEMSAEEFLKLYGWTTERALVFTKVTTGRSPMIAVRV 186
V N + D+++YGY V DSI+AIL +S EF ++ R +VFT+V++GRSPMIA++V
Sbjct: 134 VVNSFVTDKKVYGYVVTDSIRAILSLSGLEFYQVLSMMVNRVVVFTRVSSGRSPMIALKV 193
Query: 187 QGLKPAMVVLHGVKRLDELAVKIAEKERVPLVVSRAENETELIAGLRKLV 236
++P +VV H +LD LA+ ++E E + ++VS E +LI GLR L+
Sbjct: 194 APIRPQVVVFHRPVKLDPLALMLSEVEGINIIVSMKPTEEDLIKGLRSLL 243
>gb|AAG19879.1| (AE005072) Vng1616c [Halobacterium sp. NRC-1]
Length = 269
Score = 183 bits (459), Expect = 2e-45
Identities = 103/231 (44%), Positives = 149/231 (63%), Gaps = 5/231 (2%)
Query: 6 KEILAKRIAGEIVLSPDPGKTMRKWREIFGISQTELADYLGVSSSVISDYEGGRRKSPGA 65
+E LA RI+GE+ LS DPG T+RKWR F +SQT LAD L VSSSVISDYE GRR+SPG
Sbjct: 40 REGLAVRISGEVTLSDDPGATLRKWRTDFDVSQTALADELDVSSSVISDYESGRRESPGI 99
Query: 66 STIRKFVEALIEIDEKRGGNVIKAFSRTLGSEIPTNAILDIREFDIPVTVKDVVEAVRGE 125
+ + + V AL++IDE+RGG I F+R L + ++ +LD+RE+ V + + +AV
Sbjct: 100 ALVSRLVNALLDIDERRGGTHIGQFARVLSAGFDSDVVLDLREYPAAVELDALYDAVDAT 159
Query: 126 IVANPDLVDRRIYGYTVVDSIQAILEMSAEEFLKLYGWTTERALVFTKVTTGRSPMIAVR 185
V D + G+TV+DSI+AI +S + F +LYG +T R L FT V+ G SP++A+R
Sbjct: 160 EVVPGD--RDTVSGHTVIDSIKAIQRLSGDGFYRLYGQSTSRVLGFTNVSRGESPLVAMR 217
Query: 186 VQGLKPAMVVLHGVKRLD--ELAVKIAEKERVPLVVSRAENETELIAGLRK 234
V P+ V+LHG+ D E A +A+++ L V+ E +++A LR+
Sbjct: 218 VVDPTPSAVLLHGLSPDDLWEHAPALAKRDGFSLAVTEMPVE-DMLASLRQ 267
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.373
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79943184
Number of Sequences: 2977
Number of extensions: 3034596
Number of successful extensions: 8432
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8409
Number of HSP's gapped (non-prelim): 8
length of query: 239
length of database: 189,106,746
effective HSP length: 59
effective length of query: 180
effective length of database: 153,796,013
effective search space: 27683282340
effective search space used: 27683282340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)