BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0476 (PAB0476) DE:Hypothetical protein
(277 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75112 hypothetical protein PAB0476 - Pyrococcus abyssi (st... 578 e-164
pir||G71021 hypothetical protein PH1468 - Pyrococcus horikoshii ... 533 e-151
gi|11498507 conserved hypothetical protein [Archaeoglobus fulgid... 243 1e-63
pir||D72689 hypothetical protein APE0932 - Aeropyrum pernix (str... 189 3e-47
gi|11499184 conserved hypothetical protein [Archaeoglobus fulgid... 116 3e-25
pir||G83636 conserved hypothetical protein PA0069 [imported] - P... 113 2e-24
gi|11499178 conserved hypothetical protein [Archaeoglobus fulgid... 113 3e-24
pir||D72417 conserved hypothetical protein - Thermotoga maritima... 112 6e-24
gb|AAK42854.1| Conserved hypothetical protein [Sulfolobus solfat... 101 8e-21
emb|CAC12502.1| (AL445067) conserved hypothetical protein [Therm... 100 2e-20
gb|AAC14571.1| (AF059568) hypothetical protein [Brucella meliten... 99 5e-20
dbj|BAB05937.1| (AP001514) unknown conserved protein in others [... 84 2e-15
sp|Q58096|Y683_METJA HYPOTHETICAL PROTEIN MJ0683 >gi|2128440|pir... 83 3e-15
pir||T35968 conserved hypothetical protein SC9C7.17c - Streptomy... 83 5e-15
pir||S76246 hypothetical protein - Synechocystis sp. (strain PCC... 81 2e-14
sp|Q50643|YP78_MYCTU HYPOTHETICAL 37.2 KDA PROTEIN RV2578C >gi|7... 76 6e-13
pir||D75180 hypothetical protein PAB0414 - Pyrococcus abyssi (st... 69 6e-11
>pir||A75112 hypothetical protein PAB0476 - Pyrococcus abyssi (strain Orsay)
>gi|5458121|emb|CAB49610.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 277
Score = 578 bits (1475), Expect = e-164
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MYIRPFDPWKSKLCTCPFKYTLNPYTGCDHACVYCYITGYIPKAFKVRVKSNLLPQLERE 60
MYIRPFDPWKSKLCTCPFKYTLNPYTGCDHACVYCYITGYIPKAFKVRVKSNLLPQLERE
Sbjct: 1 MYIRPFDPWKSKLCTCPFKYTLNPYTGCDHACVYCYITGYIPKAFKVRVKSNLLPQLERE 60
Query: 61 LRKFNKNFIIAMSYSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVLK 120
LRKFNKNFIIAMSYSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVLK
Sbjct: 61 LRKFNKNFIIAMSYSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVLK 120
Query: 121 DLRCAVGITVTTVDEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIPFYTWED 180
DLRCAVGITVTTVDEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIPFYTWED
Sbjct: 121 DLRCAVGITVTTVDEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIPFYTWED 180
Query: 181 FEETVDALSFVSHITVSTLKLRPDIRARMRAKFPELMKKLEPLYTERMEGYTYLRKDIRF 240
FEETVDALSFVSHITVSTLKLRPDIRARMRAKFPELMKKLEPLYTERMEGYTYLRKDIRF
Sbjct: 181 FEETVDALSFVSHITVSTLKLRPDIRARMRAKFPELMKKLEPLYTERMEGYTYLRKDIRF 240
Query: 241 KILDEARRIIEGKGITFGSCREGYYSYPTCDGSHLVP 277
KILDEARRIIEGKGITFGSCREGYYSYPTCDGSHLVP
Sbjct: 241 KILDEARRIIEGKGITFGSCREGYYSYPTCDGSHLVP 277
>pir||G71021 hypothetical protein PH1468 - Pyrococcus horikoshii
>gi|3257892|dbj|BAA30575.1| (AP000006) 277aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 277
Score = 533 bits (1359), Expect = e-151
Identities = 249/277 (89%), Positives = 266/277 (95%)
Query: 1 MYIRPFDPWKSKLCTCPFKYTLNPYTGCDHACVYCYITGYIPKAFKVRVKSNLLPQLERE 60
MYIRPFDPWKSKLCTCPFKYTLNPYTGCDHACVYCYIT YIP AFKVR K NLL Q+ERE
Sbjct: 1 MYIRPFDPWKSKLCTCPFKYTLNPYTGCDHACVYCYITSYIPNAFKVRPKKNLLIQVERE 60
Query: 61 LRKFNKNFIIAMSYSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVLK 120
LRKF+K +IIAMSYSSDPYPTIE+ LGITRKVLELFRRY+VRCL+LTKSDIFERDID+LK
Sbjct: 61 LRKFDKRYIIAMSYSSDPYPTIEKELGITRKVLELFRRYDVRCLILTKSDIFERDIDILK 120
Query: 121 DLRCAVGITVTTVDEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIPFYTWED 180
+LRCAVG+TVTT+DE KAKLLEPNAPLPKDRIRALKKAKKEGIPVYAR+DPIIPFYTWED
Sbjct: 121 ELRCAVGVTVTTIDERKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARVDPIIPFYTWED 180
Query: 181 FEETVDALSFVSHITVSTLKLRPDIRARMRAKFPELMKKLEPLYTERMEGYTYLRKDIRF 240
F +TVDALSFVSHITVSTLKLRPDI+ARMRAKFPELMKKLEPLYTER EGY YLRKD+RF
Sbjct: 181 FRKTVDALSFVSHITVSTLKLRPDIKARMRAKFPELMKKLEPLYTERYEGYAYLRKDMRF 240
Query: 241 KILDEARRIIEGKGITFGSCREGYYSYPTCDGSHLVP 277
+IL+EAR+IIEGKGITFGSCREGYYSYPTCDGSHLVP
Sbjct: 241 RILNEARKIIEGKGITFGSCREGYYSYPTCDGSHLVP 277
>gi|11498507 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448961|pir||F69362 conserved hypothetical protein
AF0902 - Archaeoglobus fulgidus
>gi|2649696|gb|AAB90337.1| (AE001041) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 270
Score = 243 bits (615), Expect = 1e-63
Identities = 130/275 (47%), Positives = 174/275 (63%), Gaps = 13/275 (4%)
Query: 3 IRPFDPWKSKLCTCPFKYTLNPYTGCDHACVYCYITGYIPKAFKVRVKSNLLPQLERELR 62
IR FDPWKS LCTCP KY+ NPYTGC H C+YCY T YIP FK+R K NL LER+L+
Sbjct: 4 IREFDPWKSPLCTCPEKYSFNPYTGCAHGCLYCYAT-YIPSFFKLREKRNLFRNLERDLQ 62
Query: 63 KFNKNFIIAMSYSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVLKDL 122
+ N +I+MS SSDPYP +E+ ITRK LE+ + Y+VR +++TKSDI RD+ +L ++
Sbjct: 63 ELPANALISMSNSSDPYPPVEKAREITRKCLEIMKDYDVRVMVVTKSDIVVRDLRLLSEM 122
Query: 123 RCAVGITVTTVDEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIPFYTWEDFE 182
R AV IT+T +DE EPNAP + RI ALK K GIP R+DP+IP D +
Sbjct: 123 RSAVSITITGLDE-----FEPNAPPTEKRIEALKAVKDAGIPAVLRLDPVIPGV--NDSK 175
Query: 183 ETVDALSFVSHITVSTLKLRPDIRARMRAKFPELMKKLEPLYTERMEGYTYLRKDIRFKI 242
+ + H+ STLKL+ D ARM K P L K++E ER Y Y +++R ++
Sbjct: 176 LDIIEKAMPDHVVTSTLKLKADSLARMAKKLPWL-KRIE---FERKGAYRYFPEEVRRRV 231
Query: 243 LDEARRIIEGKGITFGSCREGY-YSYPTCDGSHLV 276
L + + E G+ G CREG+ + +CDGSHL+
Sbjct: 232 LFKIKSFCEEIGVGVGFCREGFEFPSKSCDGSHLI 266
>pir||D72689 hypothetical protein APE0932 - Aeropyrum pernix (strain K1)
>gi|5104601|dbj|BAA79916.1| (AP000060) 326aa long
hypothetical protein [Aeropyrum pernix]
Length = 326
Score = 189 bits (475), Expect = 3e-47
Identities = 112/290 (38%), Positives = 162/290 (55%), Gaps = 23/290 (7%)
Query: 6 FDPWKSKLCTCPFKYTLNPYTGCDHACVYCYITGYIPKAFKVRVKSNLLPQLERELRKFN 65
FDPW S LC CPFKY+LNPYTGC C YCY T YI K L+ +LER+L +
Sbjct: 22 FDPWNSPLCVCPFKYSLNPYTGCSIGCRYCYATAYI-GVKPSTPKRRLVGRLERDLGRIP 80
Query: 66 KNFIIAMSYSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIFE-RDIDVLKDLRC 124
++ + SSDPYP E LG+TR+ LE+ R L+ TK ++ RD+D+L
Sbjct: 81 PGALVNIGTSSDPYPPEEEKLGLTRRALEVLAPRGYRLLITTKGTLYAWRDLDILSRANA 140
Query: 125 AVGITVTTV-DEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIPFYTWE--DF 181
A+ ++T + + +EP AP +RI A A + G+PV R+DP+IP+ + +
Sbjct: 141 AITPSITGLGGNSLLRAVEPGAPGQDERIAAAAAAVRSGVPVGVRVDPVIPYVNDDPHEL 200
Query: 182 EETVDAL--SFVSHITVSTLKLRPDIRARMRAKFPELMKKLEPLYTER---MEGYTYLRK 236
+E V L + V I ST K RPD +RMR ++L LY ER M GY YL +
Sbjct: 201 KELVGRLAEAGVRFIVTSTYKARPDNLSRMRRALGAEGERLYRLYRERGVYMHGYIYLPE 260
Query: 237 DIRFKIL----DEARRIIEGKGITFGSCREGY-----YSYPTCDGSHLVP 277
++R ++L +EA R+ G+ + +CREG+ ++ +CDGSHL+P
Sbjct: 261 EVRRRLLKPVIEEAARL----GLEYATCREGFTGREWFNAESCDGSHLIP 306
>gi|11499184 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448958|pir||D69448 conserved hypothetical protein
AF1589 - Archaeoglobus fulgidus
>gi|2648971|gb|AAB89659.1| (AE000993) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 255
Score = 116 bits (288), Expect = 3e-25
Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 9/163 (5%)
Query: 20 YTLNPYTGCDHACVYCYITGYIPKAFKVR------VKSNLLPQLERELRKFNKNFIIAMS 73
+T+NPY GC H C+YCY Y K R +K NL L RELR+ N + +S
Sbjct: 24 FTINPYVGCAHGCIYCYARLYCQKDIGKRWGEIVVIKENLPEVLGRELRR-RVNGRVVLS 82
Query: 74 YSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVLKD--LRCAVGITVT 131
+D Y +ER G+TR++LE+ + R + TKSD+ RD+D+ + VG T+T
Sbjct: 83 TLTDAYQPLERREGLTRRILEILIENDFRVGIQTKSDLVLRDLDLFLQNVSKVDVGFTIT 142
Query: 132 TVDEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIP 174
T+D K++EP+AP P R++A+++ +EGI + + PIIP
Sbjct: 143 TLDSSLVKIIEPHAPSPLRRVKAIERLSEEGIKTWIFLGPIIP 185
>pir||G83636 conserved hypothetical protein PA0069 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9945893|gb|AAG03459.1|AE004446_7 (AE004446)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 352
Score = 113 bits (280), Expect = 2e-24
Identities = 75/244 (30%), Positives = 121/244 (48%), Gaps = 23/244 (9%)
Query: 17 PFKYTLNPYTGCDHACVYCY---------ITGYIPKAFKVRVKSNLLPQLERELRKFNKN 67
PF ++NPY GC+H C+YCY ++ I ++ KSN+ LE+EL K
Sbjct: 62 PFDRSINPYRGCEHGCIYCYARPSHAYWDLSPGIDFETRLIAKSNVASALEQELSKPGYR 121
Query: 68 FI-IAMSYSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVLKDLR--- 123
I + ++DPY +ER +TR+VLE+ R+ ++TK + RD+D+L++L
Sbjct: 122 CAPINLGANTDPYQPLERERRLTRQVLEVLLRFRHPLTIVTKGSLILRDLDLLRELAEQN 181
Query: 124 -CAVGITVTTVDEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIPFYTWEDFE 182
AV I++TT+D+E ++LEP A P R+RA++ GIPV P+IP + E
Sbjct: 182 LVAVMISLTTLDDELKRILEPRAAAPSARLRAIRTLSGNGIPVGVLCSPMIPMVNDMELE 241
Query: 183 ETVDALSFVSHITVSTLKLR------PDIRARMRAKFPELMKKLEPLYTERMEGYTYLRK 236
+ A + + + LR P + A +P+ + + L + G Y
Sbjct: 242 RLLQAARDAGARSAAYMLLRLPREVGPLFEEWLAAHYPQRAEHVMSLVRQCRGGEVY--- 298
Query: 237 DIRF 240
D RF
Sbjct: 299 DSRF 302
>gi|11499178 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483147|pir||F69447 conserved hypothetical protein
AF1583 - Archaeoglobus fulgidus
>gi|2648973|gb|AAB89662.1| (AE000993) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 390
Score = 113 bits (279), Expect = 3e-24
Identities = 78/239 (32%), Positives = 120/239 (49%), Gaps = 28/239 (11%)
Query: 17 PFKYTLNPYTGCDHACVYCYI--TGYI----PKAF--KVRVKSNLLPQLERELRKFN--- 65
PF+ T N Y GC H CVYCY T Y P F ++ VK N E+E+ K+
Sbjct: 26 PFRLTANIYRGCSHGCVYCYAACTHYYMRSSPNLFSKEIYVKKNAPEIFEKEIAKYEQRK 85
Query: 66 KNFIIAMSYSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVLKDLR-- 123
+ +I + SD Y +E + +TRK+LE+ +++ C + TKS + DID+++ L
Sbjct: 86 RKSVIVIGNISDTYQPVETNYRLTRKLLEICYKHDFPCFIETKSPLILNDIDIIEKLAER 145
Query: 124 --CAVGITVTTVDEEKAKLLEPNAP---------LPKDRIRALKKAKKEGIPVYARIDPI 172
VG+TVT+ D E +L+EP P K+RI L++ + G+ Y I P
Sbjct: 146 ELIGVGMTVTSYDNEFTRLVEPLVPRSKFVRSPIRQKERILTLQRLSEIGVDTYLHITPY 205
Query: 173 IPFYTWEDFEETV--DALSFVSHITVSTLKLRPDIRARMRAKF--PELMKKLEPLYTER 227
PF T ED E + A + V ++ ++ L++ I R++ F E L PLY +R
Sbjct: 206 FPFVTDEDVERIIRDAAEAGVGNVIMAPLEISGFIWNRLKKVFKSSERYSSLIPLYEKR 264
>pir||D72417 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980608|gb|AAD35211.1|AE001697_11 (AE001697)
conserved hypothetical protein [Thermotoga maritima]
Length = 245
Score = 112 bits (277), Expect = 6e-24
Identities = 62/166 (37%), Positives = 98/166 (58%), Gaps = 11/166 (6%)
Query: 19 KYTLNPYTGCDHACVYCYITGYIPK------AFKVRVKSNLLPQLERELRKFNKNFIIAM 72
+YTL+PY GC +ACVYCY + Y + ++ VK N+ L +++ K K + M
Sbjct: 22 RYTLSPYVGCTNACVYCYASDYARRYREMIWKSEIIVKRNIAEVLRKDIIK-KKPHHVFM 80
Query: 73 SYSSDPYPTIERHLGITRKVLELFRRY---NVRCLLLTKSDIFERDIDVLKDLR-CAVGI 128
S DPY IE+ +TR+ LE+F + + ++LTKS + RD+D+ K +R +VG+
Sbjct: 81 STMCDPYQPIEKEYKLTRRCLEVFLEFPLLEIEVMILTKSTLVLRDLDLFKKMRRISVGL 140
Query: 129 TVTTVDEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIP 174
+VTT D+E K+ EPN+ ++R+ ALK K+ GI I P++P
Sbjct: 141 SVTTDDDEIRKMFEPNSSSIEERVEALKVLKENGIRTCVFISPMLP 186
>gb|AAK42854.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 261
Score = 101 bits (250), Expect = 8e-21
Identities = 66/179 (36%), Positives = 95/179 (52%), Gaps = 14/179 (7%)
Query: 20 YTLNPYTGCDHACVYCYITGYIPKAFK-------VRVKSNLLPQLERELRKFNKNFIIAM 72
Y+LNPY GC +C YCY + P V VK NLL LERE+ K K ++ +
Sbjct: 25 YSLNPYLGCVFSCPYCYAPNFTPDREASENWGKVVAVKENLLEVLEREV-KIYKRGVVGI 83
Query: 73 SYSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVLKDL--RCAVGITV 130
S +D Y IE +TR+ L++ + R + TKS + RDIDVL + R VG TV
Sbjct: 84 STITDAYQPIEALRKLTRESLKILLKNGFRVSIQTKSPLVLRDIDVLLEYKDRVDVGFTV 143
Query: 131 TTVDEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIPFYTWEDFEETVDALS 189
T+++ + LEPNAP K R+RAL++ EG+ + + PII + E + +S
Sbjct: 144 TSLNNK----LEPNAPPAKGRLRALEELSNEGLETWIFLGPIIQGVNDTEVENIIREIS 198
>emb|CAC12502.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 264
Score = 100 bits (246), Expect = 2e-20
Identities = 59/170 (34%), Positives = 87/170 (50%), Gaps = 10/170 (5%)
Query: 20 YTLNPYTGCDHACVYCYITGYIPKA-------FKVRVKSNLLPQLERELRKFNKNFIIAM 72
Y+LNPY GC H C+YCY A V VK N++ L+RE+ + I+ +
Sbjct: 15 YSLNPYLGCMHRCLYCYAMDMTKDARATQDWGSTVMVKKNIIEVLKREI-PHRRRGIVGI 73
Query: 73 SYSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVLKDLR--CAVGITV 130
S +DPY +E ITR+ +E+ R R + TKS + RD+D++ R VG+T+
Sbjct: 74 STITDPYQPVEFRYRITRRSIEILLREGFRVSIQTKSPLVARDLDLISKYRPMVDVGMTI 133
Query: 131 TTVDEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIPFYTWED 180
TT +KA+ +E +P P+ R RAL GI + PII + D
Sbjct: 134 TTASPDKARAIETQSPSPEARHRALSALSAAGIRTWIFFGPIIKGFNDSD 183
>gb|AAC14571.1| (AF059568) hypothetical protein [Brucella melitensis]
Length = 311
Score = 99.1 bits (243), Expect = 5e-20
Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 14/184 (7%)
Query: 18 FKYTLNPYTGCDHACVYCYIT---GYIPKAFKVRVKSNLLPQ------LEREL-RKFNKN 67
F ++NPY GC+H C+YC+ Y+ + + ++ L + LEREL R +
Sbjct: 36 FDRSINPYRGCEHGCIYCFARPTHSYMGLSAGLDFETRLFAKPDAPRLLERELARPGYQP 95
Query: 68 FIIAMSYSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVLKDLR---- 123
IA+ ++DPY +E+ I R++LE+ N ++TKS + RDID+L +R
Sbjct: 96 KTIAIGTNTDPYQPVEKKWRIMREILEVLEAANHPVGIVTKSALVVRDIDILSRMREKGL 155
Query: 124 CAVGITVTTVDEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIPFYTWEDFEE 183
V ++VTT+D A+ +EP A P R++A+++ GIP + P+IP + E
Sbjct: 156 AKVALSVTTLDAHLARTMEPRASTPSLRLQAIRRLTDAGIPASVMMGPVIPGINDHEIER 215
Query: 184 TVDA 187
+DA
Sbjct: 216 ILDA 219
>dbj|BAB05937.1| (AP001514) unknown conserved protein in others [Bacillus
halodurans]
Length = 270
Score = 83.9 bits (204), Expect = 2e-15
Identities = 67/217 (30%), Positives = 101/217 (45%), Gaps = 18/217 (8%)
Query: 18 FKYTLNPYTGCDHACVYCYITGYIPKAFK-------VRVKSNLLPQLERELRKFNK--NF 68
+ Y+LNPY GC AC YCY+ F V +K + EL + K
Sbjct: 22 YDYSLNPYVGCTFACSYCYVRKMPVALFHKGEWGDWVDIKQGVKETFSNELVRAKKRGRV 81
Query: 69 IIAMSYSSDPYPTIERHLGITRKVLELFRRYNVRCLLL-TKSDIFERDIDVLKDL--RCA 125
+ MS S+DPY +E +TR +LE+ L + T+S + RD+D+L+ L R
Sbjct: 82 HLFMSSSTDPYQPVEVEEKVTRSLLEVMADNPPDFLFVQTRSPLVTRDVDILQQLGKRVR 141
Query: 126 VGITVTTVDEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIPFYTWEDFEETV 185
V +T+ T E K P AP + R RAL + GIP + PI+P + + F E+
Sbjct: 142 VSLTIETDLESVRKAFAPKAPPIQGRKRALHALYQAGIPTQLTVAPILP--SSDRFAESY 199
Query: 186 DALSFVSHITVSTLKLRPDIRA-RMRA-KFPELMKKL 220
+S + + T +L R RA + PE + +L
Sbjct: 200 --VSIADQVCIDTFELGDGANGKRSRALRMPERLTEL 234
>sp|Q58096|Y683_METJA HYPOTHETICAL PROTEIN MJ0683 >gi|2128440|pir||C64385 hypothetical
protein MJ0683 - Methanococcus jannaschii
>gi|1591398|gb|AAB98678.1| (U67515) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 259
Score = 83.5 bits (203), Expect = 3e-15
Identities = 61/163 (37%), Positives = 80/163 (48%), Gaps = 12/163 (7%)
Query: 19 KYTLNPYTGCDHACVYCYIT------GYIPKAFKVRVKSNLLPQLERELRKFNKNFIIAM 72
KY +N Y GC +AC YCY Y V VK NL P L + K I M
Sbjct: 25 KYVINQYIGCQYACKYCYARFMCKWYNYGKWGSWVVVKENL-PDLIKNKHIKGK---IYM 80
Query: 73 SYSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVLKDLRCA-VGITVT 131
S SD Y IE+ +TR +L+ + +LTKSD+ RD+D+ K VG+T+
Sbjct: 81 SSVSDAYRPIEKDFKLTRNILKNIDK-RAELSILTKSDLVLRDMDLFKKFSSIEVGLTIN 139
Query: 132 TVDEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIP 174
+ K +EP +P + RI ALK + GI YA I PIIP
Sbjct: 140 NFEGNLKKDIEPFSPSNEKRIDALKTLYENGIKNYAFISPIIP 182
>pir||T35968 conserved hypothetical protein SC9C7.17c - Streptomyces coelicolor
>gi|4154076|emb|CAA22729.1| (AL035161) conserved
hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 348
Score = 82.7 bits (201), Expect = 5e-15
Identities = 70/255 (27%), Positives = 116/255 (45%), Gaps = 26/255 (10%)
Query: 17 PFKYTLNPYTGCDHACVYCYI----------TGYIPKAFKVRVKSNLLPQLEREL--RKF 64
PF++T+NPY GC HACVYC+ TG + ++ VK N L R+L R++
Sbjct: 59 PFEWTVNPYRGCTHACVYCFARKTHSYLDLDTG-LGFDSQIVVKVNAPEVLRRQLASRRW 117
Query: 65 NKNFIIAMSYSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVL----K 120
+AM + D Y E + ++E +LTK + RD+D+L +
Sbjct: 118 QGEH-VAMGTNVDCYQRAEGRYRLMPGIIEALTERANPFSILTKGTLILRDLDLLTRAAR 176
Query: 121 DLRCAVGITVTTVDEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIPFYTWE- 179
+ ++V D E + +EP P P+ R+ ++ + GI + P+IPF E
Sbjct: 177 VTEVGISVSVGFTDAELWRTVEPGTPAPERRLEVVRALGERGIGCGVLMAPVIPFLGDEP 236
Query: 180 -DFEETVDALSF--VSHITVSTLKLRPDIR----ARMRAKFPELMKKLEPLYTERMEGYT 232
TV A++ + +T L LRP R A + P L+++ E LY +
Sbjct: 237 AQLRATVRAIAAAGATSVTPLVLHLRPGAREWFMAWLGRHHPHLVRRYERLYADGAYAPK 296
Query: 233 YLRKDIRFKILDEAR 247
+ ++ I ++ D AR
Sbjct: 297 WYQRRITRQVHDLAR 311
>pir||S76246 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1653592|dbj|BAA18505.1| (D90914) hypothetical
protein [Synechocystis sp.]
Length = 225
Score = 80.8 bits (196), Expect = 2e-14
Identities = 59/211 (27%), Positives = 103/211 (47%), Gaps = 11/211 (5%)
Query: 53 LLPQLERELRKFNKNFIIAMSYSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIF 112
L+ +LER +K+++ I MS +DPY IE+ + ITRK+LE+ +Y +L T+S +
Sbjct: 10 LVSELERISKKYDRPIRIYMSSVTDPYQPIEKEVQITRKILEVLVKYQPILVLQTRSPMV 69
Query: 113 ERDIDVLKDL-RCAVGITVTTVDEEKAKLLEPNAPLPKDRIRALKKAKKE-------GIP 164
RDID+L + + I++ T E+ K E +P K R++ ++K + + I
Sbjct: 70 VRDIDLLGQFHKLRINISIPTASEKVRKDFESRSPSVKARLQTVEKLRHQLPSDDSYQIK 129
Query: 165 VYARIDPIIPFYTWEDFEETVDALSFVSHITVSTL--KLRPDIRARMRAKFPELMKKLEP 222
+ P++P Y ED + ++ L+ V I + ++A AK EL +K +
Sbjct: 130 FAITMTPLLPSYD-EDLPQFIEQLATVDRIVIQPFHSSKNQSLKASTPAKAIELKEKYQW 188
Query: 223 LYTERMEGYTYLRKDIRFKILDEARRIIEGK 253
Y + + Y L K + I EG+
Sbjct: 189 WYVDEDKNYHNLFKKLELLNQYYGVEIFEGR 219
>sp|Q50643|YP78_MYCTU HYPOTHETICAL 37.2 KDA PROTEIN RV2578C >gi|7477267|pir||A70725
hypothetical protein Rv2578c - Mycobacterium
tuberculosis (strain H37RV) >gi|1478234|emb|CAB01265.1|
(Z77724) hypothetical protein Rv2578c [Mycobacterium
tuberculosis]
Length = 340
Score = 75.7 bits (183), Expect = 6e-13
Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 26/232 (11%)
Query: 17 PFKYTLNPYTGCDHACVYCY------ITGYIPKA---FKVRVKSNLLPQLERELRKFN-K 66
PF+YT+N Y GC HAC YC+ + P +V VK+N+ L ELR+ + +
Sbjct: 61 PFRYTVNGYRGCSHACRYCFARPTHEYLDFNPGTDFDTQVVVKTNVAAVLRHELRRPSWR 120
Query: 67 NFIIAMSYSSDPYPTIERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVL----KDL 122
+A+ ++DPY E + ++ +LTK + RD+ ++ + +
Sbjct: 121 RETVALGTNTDPYQRAEGRYALMPGIIGALAASGTPLSILTKGTLLRRDLPLIAEAAQQV 180
Query: 123 RCAVGITVTTVDEEKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIPFYTWEDFE 182
+V +++ D E + +E P P+ R+ + + G+ + + P++P T D
Sbjct: 181 PVSVAVSLAVGDPELHRDVESGTPTPQARLALITAIRAAGLDCHVMVAPVLPQLT--DSG 238
Query: 183 ETVD------ALSFVSHITVSTLKLRPDIR----ARMRAKFPELMKKLEPLY 224
E +D A + + +TV L LR R + PEL+ + LY
Sbjct: 239 EHLDQLLGQIAAAGATGVTVFGLHLRGSTRGWFMCWLARAHPELVSRYRELY 290
>pir||D75180 hypothetical protein PAB0414 - Pyrococcus abyssi (strain Orsay)
>gi|5458033|emb|CAB49523.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 389
Score = 69.1 bits (166), Expect = 6e-11
Identities = 66/254 (25%), Positives = 111/254 (42%), Gaps = 17/254 (6%)
Query: 25 YTGCDHACVYCYITGYIP---KAFKVRVKSNLLPQLERELRKFNKNFIIAMSYSSDPYPT 81
+T C C+YCY Y K + L+ L +R+ I S SDP+
Sbjct: 25 FTTCSVGCIYCYARWYRGPHGKPKPIFEVFKLIKSLGEVIREGYPVIPIRFSALSDPFQP 84
Query: 82 IERHLGITRKVLELFRRYNVRCLLLTKSDIFERDIDVLKDLRCAVGITVTTV------DE 135
+ IT K L++ R V ++ TK ER + VL+DL + + + V D
Sbjct: 85 PAK---ITLKALKIALRNEVPVVINTKLIPSERHLKVLEDL-ASNNLAILQVSIPADKDY 140
Query: 136 EKAKLLEPNAPLPKDRIRALKKAKKEGIPVYARIDPIIPFYTWEDFEETVD--ALSFVSH 193
++ K++EP AP ++R + ++KA GIPV R+ P+IP + E V+ A S
Sbjct: 141 KEVKVIEPFAPSIEERFKLVEKASSLGIPVIVRVQPLIPGLGDRNVENFVERVAESGAIM 200
Query: 194 ITVSTLKLRPDIRARMRAKFPELMKKLEPLYTERMEGYTYLRK--DIRFKILDEARRIIE 251
+ + L++ ++ F E K Y + L+ + R ++ + R
Sbjct: 201 VILEFLRIEKELMPLFSKLFGEENYKSWVSYLPLSQEAPLLQPPLEYRIRVAEIFSRESS 260
Query: 252 GKGITFGSCREGYY 265
G+ F +C+EG Y
Sbjct: 261 KFGLYFSTCKEGLY 274
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.143 0.439
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106932850
Number of Sequences: 2977
Number of extensions: 4415195
Number of successful extensions: 15333
Number of sequences better than 1.0e-10: 17
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 15289
Number of HSP's gapped (non-prelim): 18
length of query: 277
length of database: 189,106,746
effective HSP length: 50
effective length of query: 227
effective length of database: 159,182,396
effective search space: 36134403892
effective search space used: 36134403892
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.5 bits)
S2: 164 (68.3 bits)