BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0478 651211 651723 171 !not a gene!
         (171 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E71021 hypothetical protein PH1466 - Pyrococcus horikoshii ...   212  3e-54

>pir||E71021 hypothetical protein PH1466 - Pyrococcus horikoshii
           >gi|3257890|dbj|BAA30573.1| (AP000006) 139aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 139
           
 Score =  212 bits (533), Expect = 3e-54
 Identities = 109/139 (78%), Positives = 119/139 (85%)

Query: 27  LSFLTFFFLSIPALSRISSAYSPPMLSFLAKALTISVSSPLMSSTNLSQETSRGFSLAGG 86
           +S L FF LSIPAL  ISSAYSPPMLS LA+ALTISVSSP++SSTNLSQETSRGFSLAGG
Sbjct: 1   MSSLVFFLLSIPALRSISSAYSPPMLSLLARALTISVSSPIISSTNLSQETSRGFSLAGG 60

Query: 87  YLYSSFGFIALSLNSSYLIAPIIVLFSSTRMTLPLLKSSAIMVNFPILILTILSKSCCSI 146
           YLYS FGF+ LSLNSSYLIAP I+L S T+ T P L SSAI++NFPI ILTILSKSCCSI
Sbjct: 61  YLYSCFGFMTLSLNSSYLIAPRIMLSSVTKTTFPFLNSSAIILNFPIFILTILSKSCCSI 120

Query: 147 PSTKLPLRCFLNNMAKEEG 165
            STK PL CFL +MAKEEG
Sbjct: 121 SSTKFPLMCFLKSMAKEEG 139


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.136    0.388 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53859739
Number of Sequences: 2977
Number of extensions: 1847028
Number of successful extensions: 9128
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9127
Number of HSP's gapped (non-prelim): 1
length of query: 171
length of database: 189,106,746
effective HSP length: 55
effective length of query: 116
effective length of database: 156,189,961
effective search space: 18118035476
effective search space used: 18118035476
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 162 (67.5 bits)