BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0483 658518 658841 108 !not a gene!
         (108 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A72495 hypothetical protein APE2600 - Aeropyrum pernix (str...    89  1e-17

>pir||A72495 hypothetical protein APE2600 - Aeropyrum pernix (strain K1)
           >gi|5106306|dbj|BAA81617.1| (AP000064) 109aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 109
           
 Score = 89.3 bits (218), Expect = 1e-17
 Identities = 48/91 (52%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 6   GIGYQSSLDITPFVCSSIFFMAPAIVILNLCLSFFGTLPTRDIGWKLTPLTMSRWFKPKF 65
           G GYQ+S+ I P VCSSI F+   +VIL L LS F  +P R  GWKLTPLT S  F    
Sbjct: 14  GTGYQASMGIWPSVCSSILFITSGMVILILSLSCFLIIPVRLTGWKLTPLTTSICFPANL 73

Query: 66  IIAPASWSLTFLMSVGTR-TIPGPPAFLTFS 95
           II+P SWSL  L++VGTR T+  PP++   S
Sbjct: 74  IISPTSWSLIVLITVGTRTTLSRPPSWKALS 104


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.331    0.143    0.482 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43482680
Number of Sequences: 2977
Number of extensions: 1646184
Number of successful extensions: 3171
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3170
Number of HSP's gapped (non-prelim): 1
length of query: 108
length of database: 189,106,746
effective HSP length: 43
effective length of query: 65
effective length of database: 163,371,805
effective search space: 10619167325
effective search space used: 10619167325
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 160 (66.7 bits)