BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0485 (PAB0485) DE:Hypothetical protein
(168 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75113 hypothetical protein PAB0485 - Pyrococcus abyssi (st... 339 1e-92
pir||C71020 phaE homolog - Pyrococcus horikoshii >gi|3257880|dbj... 312 1e-84
pir||C72280 conserved hypothetical protein - Thermotoga maritima... 126 1e-28
pir||C75116 hypothetical protein PAB1884 - Pyrococcus abyssi (st... 115 4e-25
pir||E71016 hypothetical protein PH1427 - Pyrococcus horikoshii ... 113 2e-24
pir||D75101 hypothetical protein PAB0802 - Pyrococcus abyssi (st... 107 1e-22
pir||E71085 hypothetical protein PH0946 - Pyrococcus horikoshii ... 104 5e-22
pir||G75059 hypothetical protein PAB1401 - Pyrococcus abyssi (st... 91 6e-18
gb|AAG19086.1| (AE005007) Vng0571c [Halobacterium sp. NRC-1] 89 4e-17
dbj|BAA35099.1| (AB015981) MnhE [Staphylococcus aureus] 70 2e-11
dbj|BAB05034.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans] 68 7e-11
>pir||A75113 hypothetical protein PAB0485 - Pyrococcus abyssi (strain Orsay)
>gi|5458129|emb|CAB49618.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 168
Score = 339 bits (860), Expect = 1e-92
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MAEASRISKFLYTFIVTFIIWLFLTASLDPQELTIGAIFSAIVSALTYDIFTTRGLSNLH 60
MAEASRISKFLYTFIVTFIIWLFLTASLDPQELTIGAIFSAIVSALTYDIFTTRGLSNLH
Sbjct: 1 MAEASRISKFLYTFIVTFIIWLFLTASLDPQELTIGAIFSAIVSALTYDIFTTRGLSNLH 60
Query: 61 PRRIAYAIIYVPYFLWAMIKANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSI 120
PRRIAYAIIYVPYFLWAMIKANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSI
Sbjct: 61 PRRIAYAIIYVPYFLWAMIKANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSI 120
Query: 121 TLTPGTITLDVDGDKYFIHWIDVKDSSVEGASENITRPFEKFLKVIFE 168
TLTPGTITLDVDGDKYFIHWIDVKDSSVEGASENITRPFEKFLKVIFE
Sbjct: 121 TLTPGTITLDVDGDKYFIHWIDVKDSSVEGASENITRPFEKFLKVIFE 168
>pir||C71020 phaE homolog - Pyrococcus horikoshii >gi|3257880|dbj|BAA30563.1|
(AP000006) 174aa long hypothetical phaE product
[Pyrococcus horikoshii]
Length = 174
Score = 312 bits (792), Expect = 1e-84
Identities = 148/168 (88%), Positives = 160/168 (95%)
Query: 1 MAEASRISKFLYTFIVTFIIWLFLTASLDPQELTIGAIFSAIVSALTYDIFTTRGLSNLH 60
M EASR+S++LYTFIV IIWLFLTASLDPQEL +G IFSAIV+ TYDIFTTRGLSNLH
Sbjct: 7 MTEASRVSRYLYTFIVVLIIWLFLTASLDPQELIVGIIFSAIVAGFTYDIFTTRGLSNLH 66
Query: 61 PRRIAYAIIYVPYFLWAMIKANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSI 120
PRRIAYAIIY+PYFLWAMIKANLDVAYRVLHPKRPINPGIVEC+T LKNEVGKLALANSI
Sbjct: 67 PRRIAYAIIYIPYFLWAMIKANLDVAYRVLHPKRPINPGIVECKTELKNEVGKLALANSI 126
Query: 121 TLTPGTITLDVDGDKYFIHWIDVKDSSVEGASENITRPFEKFLKVIFE 168
TLTPGTITLD+DGD+YFIHWIDVKDSS+EGASE+IT+PFEKFLKVIFE
Sbjct: 127 TLTPGTITLDIDGDRYFIHWIDVKDSSIEGASEHITKPFEKFLKVIFE 174
>pir||C72280 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981758|gb|AAD36280.1|AE001778_1 (AE001778)
conserved hypothetical protein [Thermotoga maritima]
Length = 155
Score = 126 bits (314), Expect = 1e-28
Identities = 66/155 (42%), Positives = 97/155 (62%), Gaps = 3/155 (1%)
Query: 14 FIVTFIIWLFLTASLDPQELTIGAIFSAIVSALTYDIFTTRGLSNLHPRRIAYAIIYVPY 73
F+ + I+WL +T EL G + S VS + R + L R + YA++++P
Sbjct: 4 FLTSLILWLVITR-FSYSELLAGIVVSLAVSLIFRKYHGIRFDAKLPLRIVRYAVMFLPI 62
Query: 74 FLWAMIKANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSITLTPGTITLDVDG 133
F+ M+KAN+DVA RVL+P+ P+ PG VE +T LK + +L LANSITLTPGT+++DV
Sbjct: 63 FIIEMVKANIDVALRVLNPRLPLKPGFVELKTNLKKDASRLFLANSITLTPGTLSVDVKD 122
Query: 134 DKYFIHWIDVKDSSVEGASENITRPFEKFLKVIFE 168
D+ F+HWI+VK S E I+ FE+ +K +FE
Sbjct: 123 DRIFVHWIEVK--STEEKERYISGKFERLIKGVFE 155
>pir||C75116 hypothetical protein PAB1884 - Pyrococcus abyssi (strain Orsay)
>gi|5458155|emb|CAB49644.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 167
Score = 115 bits (284), Expect = 4e-25
Identities = 67/167 (40%), Positives = 97/167 (57%), Gaps = 10/167 (5%)
Query: 10 FLYTFIVTFIIWLFLTASL-----DPQELTIGAIFSAIVSALTYDIFTTRGLSNLHPRRI 64
F+ FI ++ +WL LTA PQEL G IFSAIV T +I + L+P ++
Sbjct: 3 FIAAFIWSYFMWLVLTAGSKGLLWSPQELIAGLIFSAIVGYATRNIIGEKAGRFLNPIKL 62
Query: 65 AYAIIYVPYFLWAMIKANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSITLTP 124
I Y P W M+KANLDVAYRV+ K I PGIV L+N+ L+NSITLTP
Sbjct: 63 VLFIAYAPVLFWGMVKANLDVAYRVITGK--IRPGIVRVPVNLENDAQYTILSNSITLTP 120
Query: 125 GTITLDVDGDK--YFIHWIDVKDS-SVEGASENITRPFEKFLKVIFE 168
GT+T++ ++ ++HWI++ + +SE ++ PFEK+ + + E
Sbjct: 121 GTLTIEASPEEKALYVHWINIPEGLEWPKSSEPVSGPFEKWARRLGE 167
>pir||E71016 hypothetical protein PH1427 - Pyrococcus horikoshii
>gi|3257850|dbj|BAA30533.1| (AP000006) 167aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 167
Score = 113 bits (279), Expect = 2e-24
Identities = 68/163 (41%), Positives = 95/163 (57%), Gaps = 10/163 (6%)
Query: 10 FLYTFIVTFIIWLFLTASL-----DPQELTIGAIFSAIVSALTYDIFTTRGLSNLHPRRI 64
F+ FI ++ +WL LTA + QEL G IFSAIV T +I R L+P +
Sbjct: 3 FITAFIWSYFMWLILTAGSKGLLWNSQELIAGLIFSAIVGYATRNIIGERASRFLNPVKW 62
Query: 65 AYAIIYVPYFLWAMIKANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSITLTP 124
I Y P W MIKANLDVAYRV+ K I PGIV+ L+N+ L+NSITLTP
Sbjct: 63 ILFIAYAPVLFWGMIKANLDVAYRVITGK--IRPGIVKVPVNLENDAQYTILSNSITLTP 120
Query: 125 GTITLDVDGDK--YFIHWIDV-KDSSVEGASENITRPFEKFLK 164
GT+T++ ++ ++HWI++ K +SE ++ PFEK+ +
Sbjct: 121 GTLTIEASPEEKVLYVHWINIPKGLEWPESSEPVSGPFEKWAR 163
>pir||D75101 hypothetical protein PAB0802 - Pyrococcus abyssi (strain Orsay)
>gi|5458625|emb|CAB50113.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 201
Score = 107 bits (264), Expect = 1e-22
Identities = 64/169 (37%), Positives = 99/169 (57%), Gaps = 12/169 (7%)
Query: 9 KFLYTFIVTFIIWLFLTASLDPQELTIGAIFSAIVSALTYDIFT--TRGLSNLHPRRIAY 66
+F+ T++ WL ++ L + +T+GAI +AI+S D T R +L + + +
Sbjct: 34 RFVLTWVTLMAFWLGISCDLSYRGVTLGAITTAIISFYLRDFLTDDVRHSKHLAWKILYF 93
Query: 67 AIIYVPYFLWAM----IKANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSITL 122
A+IY P +L M +++N+ VA + INPGIV+ +T L ++ G LANSITL
Sbjct: 94 ALIYFPQYLMIMAFRLLESNIKVARHAI--LMDINPGIVKIKTTLHSDTGITILANSITL 151
Query: 123 TPGTITLDV----DGDKYFIHWIDVKDSSVEGASENITRPFEKFLKVIF 167
TPGT+T+DV DG ++HWIDV+ +VE A E I E++LK +F
Sbjct: 152 TPGTLTIDVAKKLDGTYLYVHWIDVETLNVERAGELIKGDIEEWLKKVF 200
>pir||E71085 hypothetical protein PH0946 - Pyrococcus horikoshii
>gi|3257360|dbj|BAA30043.1| (AP000004) 201aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 201
Score = 104 bits (258), Expect = 5e-22
Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 12/169 (7%)
Query: 9 KFLYTFIVTFIIWLFLTASLDPQELTIGAIFSAIVSALTYDIFTT--RGLSNLHPRRIAY 66
+F T+++ + WL +T L + L +G +AI+S D T R +L + + +
Sbjct: 34 RFAITWLILLVFWLGITGDLSYRGLILGFPTTAIISYYLRDFLTEDIRHSKHLAWKILYF 93
Query: 67 AIIYVPYFL----WAMIKANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSITL 122
A IY+P +L + ++++NL VA L INPGIV+ RT L ++ G LANSITL
Sbjct: 94 AFIYLPQYLIIMGFRLLESNLKVAKHAL--LMDINPGIVKIRTDLHSDTGITILANSITL 151
Query: 123 TPGTITLDV----DGDKYFIHWIDVKDSSVEGASENITRPFEKFLKVIF 167
TPGT+TLDV DG ++HWIDV+ +VE A E I E++LK +F
Sbjct: 152 TPGTLTLDVVKKLDGTYLYVHWIDVETLNVEKAGEIIKGDIEEWLKKMF 200
>pir||G75059 hypothetical protein PAB1401 - Pyrococcus abyssi (strain Orsay)
>gi|5458885|emb|CAB50372.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 161
Score = 91.3 bits (223), Expect = 6e-18
Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 10 FLYTFIVTFIIWLFLTASLDPQELTIGAIFSAIVSALTYDIFTTRGLSNLHPRRIAYAII 69
F+ TFI+ F+ ++ T S+ +L G I IV L + L+P R + ++
Sbjct: 4 FIPTFILAFLTYVLFTGSIRTFDLITGLIVGIIVGLLMGNYLVKDDSKALNPVRWLWGVV 63
Query: 70 YVPYFLWAMI----KANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSITLTPG 125
Y FLW M+ +A+LDV R L NPGIV+ +K + K +A SIT TPG
Sbjct: 64 Y---FLWYMLVAETRAHLDVIVRTLTGN--YNPGIVKVPIDVKTDYAKTLIATSITNTPG 118
Query: 126 TITLDVDGDKYFIHWIDVKDSSVEGASENITRPFEKFLKVIFE 168
T+ +D+D +++WI+V + E A + I FE++ K IFE
Sbjct: 119 TVVVDLDDKFMYVNWINVTTTEPEEAKKVICEDFERYAKKIFE 161
>gb|AAG19086.1| (AE005007) Vng0571c [Halobacterium sp. NRC-1]
Length = 364
Score = 88.5 bits (216), Expect = 4e-17
Identities = 52/163 (31%), Positives = 84/163 (50%), Gaps = 9/163 (5%)
Query: 1 MAEASRISKFLYTFIVTFIIWLFLTASLDPQELTIGAIFSAIVSALTYDIFTTRGLSNLH 60
+ ++ + +F F F + + L L GAI + IV+ + + T ++
Sbjct: 158 ITRSAGLGQFALLFGAAFGFYQLIATELTTVNLITGAITATIVAGVLRRVSTQ---GSVR 214
Query: 61 PRR----IAYAIIYVPYFLWAMIKANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLAL 116
PRR + ++Y PY LW + KAN+ +A VLHP+ PI+P +VE + +E+ L
Sbjct: 215 PRRLVGRVGRMLVYAPYLLWEIAKANVAIAKVVLHPRLPIDPAVVEFDAAVWSELPATTL 274
Query: 117 ANSITLTPGTITLDVDGDKYFIHWI--DVKDSSVEGASENITR 157
ANSITLTPGT+T+DV + +H + D + + G E R
Sbjct: 275 ANSITLTPGTLTVDVTQRHFTVHSLTADARRDLLAGGLERAVR 317
>dbj|BAA35099.1| (AB015981) MnhE [Staphylococcus aureus]
Length = 159
Score = 69.9 bits (168), Expect = 2e-11
Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 9/162 (5%)
Query: 9 KFLYTFIVTFIIWLFLTASLDPQELTIGAIFSAIVSALTYDIFTTRGLSNLHPRRIAYAI 68
+ + FI+ + WLF+T S +G IF ++ L + + R R I I
Sbjct: 4 QLVLNFIIA-VFWLFVTNSYTTNNFVLGFIFGLVLVYLLHRVLPGRFYVITLYRIIKLVI 62
Query: 69 IYVPYFLWAMIKANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSITLTPGTIT 128
I FL +IKAN DV ++ P PG T LK + + L+N ITLTPGT+
Sbjct: 63 I----FLIELIKANFDVLKIIIKPSIKNEPGFFVYHTDLKKDWQIVLLSNLITLTPGTVV 118
Query: 129 LDVDGD--KYFIHWIDVKDSSVEGASENITRPFEKFLKVIFE 168
L V D K +IH ID S+ E E+I EK ++ + E
Sbjct: 119 LGVSDDRTKIYIHAIDF--STKEQEVESIKTSLEKIVREVGE 158
>dbj|BAB05034.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans]
Length = 158
Score = 67.9 bits (163), Expect = 7e-11
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 15 IVTFIIWLFLTASLDPQELTIGAI--FSAIVSALTYDIFTTRGLSNLHPRRIAYAIIYVP 72
+V IIW+FL S + +G + +++ + IF +L+ R++ I +
Sbjct: 9 LVIAIIWMFLQNSFTFADFLVGYVVGIGILIALRRFMIF------DLYFRKVWAWIKLIV 62
Query: 73 YFLWAMIKANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSITLTPGTITLDVD 132
F ++ AN+DV VL PK I PGIV T LK++ LA I+LTPGT+++D
Sbjct: 63 LFFKELVLANIDVTKIVLSPKLDITPGIVAVPTKLKSDWELTLLAGLISLTPGTLSMDFS 122
Query: 133 GDKYFIHWIDVKDSSVEGASENITRPFEK 161
DK +I+ + E I FEK
Sbjct: 123 DDKKYIYIHSIHVPDKEAMIREIHDTFEK 151
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.326 0.141 0.423
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58024930
Number of Sequences: 2977
Number of extensions: 2154099
Number of successful extensions: 6215
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6200
Number of HSP's gapped (non-prelim): 11
length of query: 168
length of database: 189,106,746
effective HSP length: 51
effective length of query: 117
effective length of database: 158,583,909
effective search space: 18554317353
effective search space used: 18554317353
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 162 (67.5 bits)