BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0486 (PAB0486) DE:Hypothetical protein
(131 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75113 hypothetical protein PAB0486 - Pyrococcus abyssi (st... 263 8e-70
sp|O59124|YE55_PYRHO HYPOTHETICAL PROTEIN PH1455 >gi|7519152|pir... 222 2e-57
pir||E72280 conserved hypothetical protein - Thermotoga maritima... 97 7e-20
dbj|BAB05032.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans] 78 5e-14
gb|AAF21818.1|AF097740_7 (AF097740) multiple resistance and pH r... 75 4e-13
sp|O58672|Y944_PYRHO HYPOTHETICAL PROTEIN PH0944 >gi|7518908|pir... 72 3e-12
sp|Q52966|YMU2_RHIME HYPOTHETICAL 12.4 KDA PROTEIN IN MUCR 5'REG... 69 2e-11
>pir||C75113 hypothetical protein PAB0486 - Pyrococcus abyssi (strain Orsay)
>gi|5458131|emb|CAB49620.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 131
Score = 263 bits (664), Expect = 8e-70
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MNILAGIGEFLVLFGTVFYFLSTLGLIRMPDVYNRMQTATKSVTLGSLSAIIGVGLWAVG 60
MNILAGIGEFLVLFGTVFYFLSTLGLIRMPDVYNRMQTATKSVTLGSLSAIIGVGLWAVG
Sbjct: 1 MNILAGIGEFLVLFGTVFYFLSTLGLIRMPDVYNRMQTATKSVTLGSLSAIIGVGLWAVG 60
Query: 61 EGLGIAWLTKTIVIAVFLLLTNPISAHALIRGAYKSGIPLWEGSVVDKYREHLERKEREE 120
EGLGIAWLTKTIVIAVFLLLTNPISAHALIRGAYKSGIPLWEGSVVDKYREHLERKEREE
Sbjct: 61 EGLGIAWLTKTIVIAVFLLLTNPISAHALIRGAYKSGIPLWEGSVVDKYREHLERKEREE 120
Query: 121 EEEKEEGEGEE 131
EEEKEEGEGEE
Sbjct: 121 EEEKEEGEGEE 131
>sp|O59124|YE55_PYRHO HYPOTHETICAL PROTEIN PH1455 >gi|7519152|pir||B71020 hypothetical
protein PH1455 - Pyrococcus horikoshii
>gi|3257879|dbj|BAA30562.1| (AP000006) 120aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 120
Score = 222 bits (559), Expect = 2e-57
Identities = 108/120 (90%), Positives = 114/120 (95%)
Query: 1 MNILAGIGEFLVLFGTVFYFLSTLGLIRMPDVYNRMQTATKSVTLGSLSAIIGVGLWAVG 60
MN+L+GIGEFLVLFGTVFYFLSTLGLIRMPDVYNRMQTATKSVTLGSLS IIGVGLWA+G
Sbjct: 1 MNVLSGIGEFLVLFGTVFYFLSTLGLIRMPDVYNRMQTATKSVTLGSLSTIIGVGLWALG 60
Query: 61 EGLGIAWLTKTIVIAVFLLLTNPISAHALIRGAYKSGIPLWEGSVVDKYREHLERKEREE 120
EGL +AWLTKTIVIAVFLLLTNPISAH LIRGAYKSGIPLWEGSVVDKY+EHL+ KE E
Sbjct: 61 EGLSLAWLTKTIVIAVFLLLTNPISAHTLIRGAYKSGIPLWEGSVVDKYKEHLKEKEGAE 120
>pir||E72280 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981760|gb|AAD36282.1|AE001778_3 (AE001778)
conserved hypothetical protein [Thermotoga maritima]
Length = 107
Score = 97.1 bits (238), Expect = 7e-20
Identities = 49/104 (47%), Positives = 68/104 (65%), Gaps = 6/104 (5%)
Query: 7 IGEFLVLFGTVFYFLSTLGLIRMPDVYNRMQTATKSVTLGSLSAIIGVGLWAVGEGLGIA 66
IGE L+ G FYFL LG+ RMPDVYNR+Q TK+ TLG+ S ++G+G+ A E
Sbjct: 5 IGEVLIAIGAFFYFLGGLGVFRMPDVYNRLQAGTKATTLGTFSTVLGIGI-AKPE----- 58
Query: 67 WLTKTIVIAVFLLLTNPISAHALIRGAYKSGIPLWEGSVVDKYR 110
+L K IVI F+ LTNP+ + L R +Y SG+ E +V+D+Y+
Sbjct: 59 FLLKAIVIIAFIALTNPVGSSVLARASYLSGVKPCECTVIDEYK 102
>dbj|BAB05032.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans]
Length = 117
Score = 77.6 bits (188), Expect = 5e-14
Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 7 IGEFLVLFGTVFYFLSTLGLIRMPDVYNRMQTATKSVTLGSLSAIIGVGLW-AVGEGLGI 65
I +L G FL+++G+IR PDVY R+ ATKS TLG +S ++ L+ + EGL +
Sbjct: 7 IVSLFILLGAFLSFLASVGIIRFPDVYGRIHAATKSATLGVISIMVATFLYFLLIEGLFV 66
Query: 66 AWLTKTIVIAVFLLLTNPISAHALIRGAYKSGIPLWEGSVVDKYREHLERKER 118
+ TI +F+ LT P++ + R AY+ G+PLW+ SV D ++ +K +
Sbjct: 67 GKILFTI---LFVFLTAPVAGLMISRSAYRIGVPLWDQSVQDDLKKVYAKKRQ 116
>gb|AAF21818.1|AF097740_7 (AF097740) multiple resistance and pH regulation related protein G
[Bacillus firmus]
Length = 119
Score = 74.9 bits (181), Expect = 4e-13
Identities = 41/108 (37%), Positives = 62/108 (56%), Gaps = 8/108 (7%)
Query: 12 VLFGTVFYFLSTLGLIRMPDVYNRMQTATKSVTLGSLSAIIGVGLW---AVGEGLGIAWL 68
VL G L ++G+IR PDVY R+ ATKS TLG +S ++ L+ GE +G
Sbjct: 12 VLIGGFLSLLGSIGIIRFPDVYGRLHAATKSATLGVISIMLATFLFFFLVHGEFVG---- 67
Query: 69 TKTIVIAVFLLLTNPISAHALIRGAYKSGIPLWEGSVVDKYREHLERK 116
K ++ +F+ LT P++ + R AY+ G+PLWE S D ++ E+K
Sbjct: 68 -KLLLTILFVFLTAPVAGMMMGRSAYRVGVPLWEKSTQDDLKKMYEKK 114
>sp|O58672|Y944_PYRHO HYPOTHETICAL PROTEIN PH0944 >gi|7518908|pir||C71085 hypothetical
protein PH0944 - Pyrococcus horikoshii
>gi|3257358|dbj|BAA30041.1| (AP000004) 103aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 103
Score = 71.8 bits (173), Expect = 3e-12
Identities = 34/91 (37%), Positives = 54/91 (58%), Gaps = 12/91 (13%)
Query: 12 VLFGTVFYFLSTLGLIRMPDVYNRMQTATKSVTLGSLSAIIGVGL----WAVGEGLGIAW 67
+LFG + F LG++R PDVY R+ ATK T G + I+G+ + WA+
Sbjct: 7 LLFGYLIMFFGALGVVRFPDVYTRLHAATKCDTGGIMGIILGLSMIVNSWAI-------- 58
Query: 68 LTKTIVIAVFLLLTNPISAHALIRGAYKSGI 98
TK +++ +F+ + NP+ +HA+ RGAYK G+
Sbjct: 59 RTKLVILLIFIAMINPMISHAIARGAYKGGV 89
>sp|Q52966|YMU2_RHIME HYPOTHETICAL 12.4 KDA PROTEIN IN MUCR 5'REGION (ORF2)
>gi|642656|gb|AAA74238.1| (L37353) unknown
[Sinorhizobium meliloti]
Length = 116
Score = 69.5 bits (167), Expect = 2e-11
Identities = 40/118 (33%), Positives = 65/118 (54%), Gaps = 5/118 (4%)
Query: 1 MNILAGIGEFLVLFGTVFYFLSTLGLIRMPDVYNRMQTATKSVTLGSLSAIIGVGLWAVG 60
+ I+A + +++ G F L+ +GL+R PD+Y RM A+K+ T+GS + GL
Sbjct: 3 LQIIAYVVALIMVVGACFSLLAAVGLVRFPDLYTRMHAASKAGTVGSGLLLFAAGL---- 58
Query: 61 EGLGIAWLTKTIVIAVFLLLTNPISAHALIRGAYKSGIPLWEGSVVDKYREHLERKER 118
L A + + VF +LT PISAH L + A+++G + + SV+D+ H E R
Sbjct: 59 HSLDAAVFVRALAGFVFFVLTAPISAHLLAKAAHQAGYRMSKRSVIDQL-PHKEEARR 115
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.404
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50400144
Number of Sequences: 2977
Number of extensions: 2014393
Number of successful extensions: 28042
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 28030
Number of HSP's gapped (non-prelim): 7
length of query: 131
length of database: 189,106,746
effective HSP length: 52
effective length of query: 79
effective length of database: 157,985,422
effective search space: 12480848338
effective search space used: 12480848338
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)