BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0488 (PAB0488) DE:LONG HYPOTHETICAL PROTEIN
(114 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75113 long hypothetical protein PAB0488 - Pyrococcus abyss... 215 9e-56
pir||H71019 hypothetical protein PH1453 - Pyrococcus horikoshii ... 205 1e-52
pir||G75115 hypothetical protein PAB1887 - Pyrococcus abyssi (st... 101 4e-21
pir||A71017 hypothetical protein PH1430 - Pyrococcus horikoshii ... 100 8e-21
gb|AAG19081.1| (AE005007) Vng0565c [Halobacterium sp. NRC-1] 89 2e-17
pir||H72280 conserved hypothetical protein - Thermotoga maritima... 88 3e-17
pir||H71683 hypothetical protein RP285 - Rickettsia prowazekii >... 79 2e-14
pir||F69033 conserved hypothetical protein MTH1247 - Methanobact... 77 5e-14
emb|CAB52782.1| (AJ243656) transmembrane protein 12.7 kDa [Metha... 76 9e-14
pir||E64463 hypothetical protein MJ1310 - Methanococcus jannasch... 76 1e-13
pir||B72295 conserved hypothetical protein - Thermotoga maritima... 75 2e-13
pir||H75464 probable cation transport system protein - Deinococc... 73 1e-12
dbj|BAA35097.1| (AB015981) MnhC [Staphylococcus aureus] 72 2e-12
pir||H75059 hypothetical protein PAB1400 - Pyrococcus abyssi (st... 70 9e-12
pir||C70010 Na+/H+ antiporter homolog yufV - Bacillus subtilis >... 67 6e-11
pir||S75339 hypothetical protein slr2008 - Synechocystis sp. (st... 67 8e-11
>pir||E75113 long hypothetical protein PAB0488 - Pyrococcus abyssi (strain
Orsay) >gi|5458133|emb|CAB49622.1| (AJ248285) LONG
HYPOTHETICAL PROTEIN [Pyrococcus abyssi]
Length = 114
Score = 215 bits (543), Expect = 9e-56
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MISSYYFGAIALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSE 60
MISSYYFGAIALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSE
Sbjct: 1 MISSYYFGAIALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSE 60
Query: 61 GIGPNQAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEIRRLRG 114
GIGPNQAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEIRRLRG
Sbjct: 61 GIGPNQAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEIRRLRG 114
>pir||H71019 hypothetical protein PH1453 - Pyrococcus horikoshii
>gi|3257877|dbj|BAA30560.1| (AP000006) 114aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 114
Score = 205 bits (516), Expect = 1e-52
Identities = 109/114 (95%), Positives = 112/114 (97%)
Query: 1 MISSYYFGAIALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSE 60
MIS+YYFGAI+LVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSE
Sbjct: 1 MISAYYFGAISLVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSE 60
Query: 61 GIGPNQAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEIRRLRG 114
GI P+QAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKY TLNIEEIRRLRG
Sbjct: 61 GITPSQAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYRTLNIEEIRRLRG 114
>pir||G75115 hypothetical protein PAB1887 - Pyrococcus abyssi (strain Orsay)
>gi|5458151|emb|CAB49640.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 117
Score = 101 bits (248), Expect = 4e-21
Identities = 52/117 (44%), Positives = 79/117 (67%), Gaps = 3/117 (2%)
Query: 1 MISSYYFGAIALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSE 60
MI+ Y AI +V +G+YA+L K+NL+K+++ L ++++G++LLLIS GY P +
Sbjct: 1 MIAFQYLTAIIMVALGIYALLYKRNLIKLILALDLIDSGIHLLLISEGYRIENGLPTTAP 60
Query: 61 ---GIGPNQAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEIRRLRG 114
G V PIPQALVLT+IVIGV ++A+++ + Y YGTL+I ++RRLRG
Sbjct: 61 IYTGYEGGAMVAPIPQALVLTSIVIGVCVLSLAVALTVNAYRHYGTLDITKLRRLRG 117
>pir||A71017 hypothetical protein PH1430 - Pyrococcus horikoshii
>gi|3257854|dbj|BAA30537.1| (AP000006) 120aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 120
Score = 99.8 bits (245), Expect = 8e-21
Identities = 51/117 (43%), Positives = 79/117 (66%), Gaps = 3/117 (2%)
Query: 1 MISSYYFGAIALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSE 60
MI+ Y AI +V +G+YA+L K+NL+K+++ L ++++G++LLLIS GY P +
Sbjct: 4 MIAFQYLTAIIMVTLGIYALLYKRNLIKLILALDLIDSGIHLLLISEGYRLENGLPSTAP 63
Query: 61 ---GIGPNQAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEIRRLRG 114
G V PIPQALVLT+IVIGV ++A+++ + Y YGTL++ ++RRLRG
Sbjct: 64 IYTGYEGGAMVAPIPQALVLTSIVIGVCVLSLAVALTVNAYRHYGTLDLTKLRRLRG 120
>gb|AAG19081.1| (AE005007) Vng0565c [Halobacterium sp. NRC-1]
Length = 118
Score = 88.9 bits (217), Expect = 2e-17
Identities = 43/109 (39%), Positives = 69/109 (62%), Gaps = 3/109 (2%)
Query: 5 YYFGAIALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSEGIGP 64
YY + L+ IG Y ++ NL+K +IG++I +TG+ L I+ YV G + P+L+
Sbjct: 10 YYIASFLLIGIGTYVMIAAGNLVKKVIGMNIFQTGIFLFFIASAYVEGGTPPLLTS---E 66
Query: 65 NQAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEIRRLR 113
V P+P L+LTAIV+GVA TA+AL + + +Y+ YGTL+ ++ +R
Sbjct: 67 TPHVSPVPHVLILTAIVVGVALTAVALGMIVRIYDDYGTLDERTLKEVR 115
>pir||H72280 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981763|gb|AAD36285.1|AE001778_6 (AE001778)
conserved hypothetical protein [Thermotoga maritima]
Length = 112
Score = 88.2 bits (215), Expect = 3e-17
Identities = 48/110 (43%), Positives = 75/110 (67%), Gaps = 3/110 (2%)
Query: 6 YFGAIALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSEGIGPN 65
Y +I L IG+Y +L +KNL K L+ L+I++T VNL +I++GY G API ++ +
Sbjct: 3 YVISILLAGIGIYGLLTQKNLFKHLVSLTIIDTAVNLFIIALGYREG-DAPIYTDRVMNF 61
Query: 66 QA--VDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEIRRLR 113
VDP+PQALVLTAIVIGV A+ S+ + + EK+ +L++EE++ ++
Sbjct: 62 SLNFVDPLPQALVLTAIVIGVGVLALGASLLVRIKEKHSSLDLEEMKGVK 111
>pir||H71683 hypothetical protein RP285 - Rickettsia prowazekii
>gi|3860846|emb|CAA14746.1| (AJ235271) unknown
[Rickettsia prowazekii]
Length = 146
Score = 78.8 bits (191), Expect = 2e-14
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 6 YFGAIALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSEGIGPN 65
YF + L GL+ +L +N + +IGL I ++ V L +SIG + PIL +GI N
Sbjct: 41 YFFTLILFTSGLFIMLTSQNYIHKIIGLGIFQSPVLLFFLSIGKIKTGGVPILRDGI--N 98
Query: 66 QAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEI 109
P+P L+LTAIV+G AT ++ALS+ +Y+ YGT++ E+
Sbjct: 99 TYTSPLPHVLILTAIVVGFATLSVALSLIYQIYKHYGTVSENEV 142
>pir||F69033 conserved hypothetical protein MTH1247 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622359|gb|AAB85736.1| (AE000891) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 120
Score = 77.3 bits (187), Expect = 5e-14
Identities = 42/103 (40%), Positives = 65/103 (62%), Gaps = 4/103 (3%)
Query: 11 ALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSEGIGPN----Q 66
+L++IG AV+ NL+K +I LS + GVNL L+++GY G I G+ +
Sbjct: 15 SLMVIGAVAVIFIDNLIKKVIALSFIADGVNLFLVTLGYKPGGIVYIYLPGMSGSWFAQN 74
Query: 67 AVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEI 109
A P+P ALVLT+IVIG +T A+ L + I+LY K+GT++ ++
Sbjct: 75 AAYPLPFALVLTSIVIGASTLAVMLGIIIVLYHKHGTISASKV 117
>emb|CAB52782.1| (AJ243656) transmembrane protein 12.7 kDa [Methanobacterium
thermoautotrophicum]
Length = 120
Score = 76.5 bits (185), Expect = 9e-14
Identities = 43/103 (41%), Positives = 64/103 (61%), Gaps = 4/103 (3%)
Query: 11 ALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSEGIG----PNQ 66
+L++IG AV+ NL+K +I LS + GVNL L+++GY G I G+
Sbjct: 15 SLMVIGAVAVIFIDNLIKKVIALSFIADGVNLFLVTLGYRPGGIVYIYLPGMSGTWFAQN 74
Query: 67 AVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEI 109
A P+P ALVLT+IVIG +T A+ L + IILY K+GT++ ++
Sbjct: 75 ASYPLPFALVLTSIVIGASTLAVMLGIIIILYHKHGTISASKV 117
>pir||E64463 hypothetical protein MJ1310 - Methanococcus jannaschii
>gi|1591949|gb|AAB99317.1| (U67571) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 128
Score = 76.1 bits (184), Expect = 1e-13
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 5/97 (5%)
Query: 12 LVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSEGIG----PNQA 67
LV+IGLY V N+LK +I L I+ +GVNL LI+IGY +G + PI G+ ++
Sbjct: 24 LVIIGLYGVFFVDNVLKKIIALEILGSGVNLALIAIGY-NGGTIPIKLPGVSVEVFAKES 82
Query: 68 VDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTL 104
P+ ALVLT IVI + A+ L V+IILY+KY TL
Sbjct: 83 AYPLTHALVLTNIVIEASMLAVMLGVSIILYKKYKTL 119
>pir||B72295 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981649|gb|AAD36180.1|AE001769_10 (AE001769)
conserved hypothetical protein [Thermotoga maritima]
Length = 110
Score = 75.3 bits (182), Expect = 2e-13
Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 10 IALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSEGIGPNQAVD 69
+ LVLIGL VL+ ++L+K +I L IM TGV + I G + PI + + D
Sbjct: 7 LLLVLIGLLGVLINRDLIKKIISLDIMGTGVVSFFVLISRRQGEAVPIPFQ----QNSAD 62
Query: 70 PIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEIRRLRG 114
P+PQAL++T+IVIG AT A+ ++ A ++ KY +++ + + R G
Sbjct: 63 PVPQALIITSIVIGFATVALLVTTASVIASKYSSVSSDRLDREGG 107
>pir||H75464 probable cation transport system protein - Deinococcus radiodurans
(strain R1) >gi|6458597|gb|AAF10455.1|AE001941_8
(AE001941) cation transport system protein, putative
[Deinococcus radiodurans]
Length = 149
Score = 72.6 bits (175), Expect = 1e-12
Identities = 38/102 (37%), Positives = 69/102 (67%), Gaps = 4/102 (3%)
Query: 7 FGAIALVLIGLYA-VLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSEGIGPN 65
F I +L+G +L+ ++++++++GL+ + GVNL ++++ + ++ P+L+ P
Sbjct: 5 FALIIGILVGSGVFLLLSRSVVRVVLGLAFIGYGVNLAILTVAGLENKAPPLLTL---PG 61
Query: 66 QAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIE 107
VDP+PQAL+LTAIVIG ATTA+ L+VA+ Y+ G ++E
Sbjct: 62 PYVDPLPQALILTAIVIGFATTALLLTVALRAYQVAGHEDVE 103
>dbj|BAA35097.1| (AB015981) MnhC [Staphylococcus aureus]
Length = 113
Score = 72.2 bits (174), Expect = 2e-12
Identities = 41/99 (41%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 12 LVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSEGIGPNQAVDPI 71
L I +Y VL K+L++I++G +++ NL LI++G + + PI + VDPI
Sbjct: 12 LTAISVYLVL-SKSLIRIVMGTTLLTHAANLFLITMGGLKHGTVPIYEANV--KSYVDPI 68
Query: 72 PQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEIR 110
PQAL+LTAIVI ATTA L +A Y++ GT N+E ++
Sbjct: 69 PQALILTAIVIAFATTAFFLVLAFRTYKELGTDNVESMK 107
>pir||H75059 hypothetical protein PAB1400 - Pyrococcus abyssi (strain Orsay)
>gi|5458886|emb|CAB50373.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 123
Score = 69.9 bits (168), Expect = 9e-12
Identities = 44/112 (39%), Positives = 63/112 (55%), Gaps = 8/112 (7%)
Query: 7 FGAIALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGY-----VSGRSAPILSEG 61
F IA + I LY + K NL+K LI L+I NLL++ +GY V+ P LS+
Sbjct: 8 FTLIATLCISLYGIARKPNLVKKLIALTIFGDTANLLIVLLGYRLIYPVAPPILPNLSKE 67
Query: 62 IGP---NQAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEIR 110
P + AVDP+PQA V+TA+VIG+A + I +Y YGT++ +R
Sbjct: 68 ALPKFLSLAVDPLPQAFVITAVVIGMAVNVLIAFAIIQIYRLYGTVDSRILR 119
>pir||C70010 Na+/H+ antiporter homolog yufV - Bacillus subtilis
>gi|1934819|emb|CAB07944.1| (Z93937) unknown [Bacillus
subtilis] >gi|2635658|emb|CAB15151.1| (Z99120) similar
to Na+/H+ antiporter [Bacillus subtilis]
Length = 113
Score = 67.1 bits (161), Expect = 6e-11
Identities = 37/103 (35%), Positives = 65/103 (62%), Gaps = 5/103 (4%)
Query: 12 LVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSEGIGPNQAVDPI 71
++ + +L+ K+LL+++IG +++ GV+L+L+++G + +APILSE VDP+
Sbjct: 11 IIFMAATYLLLSKSLLRVIIGTALLSHGVHLMLLTMGGLKKGAAPILSE--HAKSFVDPL 68
Query: 72 PQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEIRRLRG 114
PQAL+LTAIVI T+ L A + Y L +++ ++RG
Sbjct: 69 PQALILTAIVISFGVTSCILVKA---FRAYQELESDDMGQMRG 108
>pir||S75339 hypothetical protein slr2008 - Synechocystis sp. (strain PCC 6803)
>gi|1652330|dbj|BAA17253.1| (D90904) hypothetical
protein [Synechocystis sp.]
Length = 116
Score = 66.7 bits (160), Expect = 8e-11
Identities = 37/103 (35%), Positives = 60/103 (57%), Gaps = 2/103 (1%)
Query: 11 ALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSEGIG--PNQAV 68
A V+IG ++ K+NLL ++ + ++ TGV + +G + PI+ + P Q
Sbjct: 10 AAVMIGFLGLIYKRNLLMKIVAMDVISTGVIAYYCLVAARTGITTPIVGAEVSSDPIQYA 69
Query: 69 DPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEIRR 111
DP+PQA++LTAIVIG +T + L +A+ L ++ TL I I R
Sbjct: 70 DPLPQAVILTAIVIGFSTQILMLVIAMKLAKENPTLEIAAIER 112
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.143 0.384
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34693676
Number of Sequences: 2977
Number of extensions: 1161510
Number of successful extensions: 3430
Number of sequences better than 1.0e-10: 16
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3415
Number of HSP's gapped (non-prelim): 16
length of query: 114
length of database: 189,106,746
effective HSP length: 54
effective length of query: 60
effective length of database: 156,788,448
effective search space: 9407306880
effective search space used: 9407306880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 160 (66.7 bits)