BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0490 (nuoM) DE:NADH DEHYDROGENASE I SUBUNIT M
(618 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75113 NADH dehydrogenase I chain M PAB0490 - Pyrococcus ab... 1221 0.0
pir||F71019 hypothetical protein PH1451 - Pyrococcus horikoshii ... 1086 0.0
pir||B72281 hypothetical protein TM1212 - Thermotoga maritima (s... 261 1e-68
pir||T51314 probable CO-induced hydrogenase complex chain CooM [... 231 2e-59
pir||G75060 hydrogenase-4 component B (EC 1.-.-.-) PAB1392 - Pyr... 219 8e-56
pir||F75059 NADH-dehydrogenase related PAB1402 - Pyrococcus abys... 208 2e-52
gb|AAF21815.1|AF097740_4 (AF097740) multiple resistance and pH r... 206 4e-52
pir||S61395 probable Na+/H+-exchanging protein system component ... 197 3e-49
gb|AAF21812.1|AF097740_1 (AF097740) multiple resistance and pH r... 196 6e-49
dbj|BAB05035.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans] 195 1e-48
pir||B71017 hypothetical protein PH1431 - Pyrococcus horikoshii ... 192 7e-48
dbj|BAA35098.1| (AB015981) MnhD [Staphylococcus aureus] 187 3e-46
pir||H82494 probable NADH dehydrogenase VCA0155 [imported] - Vib... 186 7e-46
pir||F75115 co-induced hydrogenase related, chain M PAB1888 - Py... 183 6e-45
pir||G71019 hypothetical protein PH1452 - Pyrococcus horikoshii ... 181 2e-44
emb|CAB07908.1| (Z93932) unknown [Bacillus subtilis] 180 5e-44
pir||G70008 NADH dehydrogenase (ubiquinone) homolog yufD - Bacil... 178 1e-43
sp|Q9ZCG0|NUOM_RICPR NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 178 2e-43
pir||F75113 NADH dehydrogenase I N chain PAB2416 - Pyrococcus ab... 178 2e-43
dbj|BAA35095.1| (AB015981) MnhA [Staphylococcus aureus] 176 8e-43
pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseu... 175 1e-42
gb|AAG19078.1| (AE005006) Vng0560c [Halobacterium sp. NRC-1] 173 5e-42
pir||F75464 probable NADH-ubiquinone/plastoquinone subunit - Dei... 166 5e-40
pir||A70010 NADH dehydrogenase homolog yufT - Bacillus subtilis ... 165 1e-39
gb|AAF65740.1|AF228525_10 (AF228525) F420H2 dehydrogenase subuni... 164 4e-39
sp|Q10880|Y051_MYCTU HYPOTHETICAL 65.6 KD PROTEIN RV0083 >gi|744... 163 5e-39
sp|P23482|HYFB_ECOLI HYDROGENASE-4 COMPONENT B >gi|7446810|pir||... 163 5e-39
emb|CAA63734.1| (X93358) phaA [Sinorhizobium meliloti] 163 6e-39
gb|AAG19080.1| (AE005007) NADH dehydrogenase/oxidoreductase; Ndh... 163 6e-39
pir||D64463 conserved hypothetical protein MJ1309 - Methanococcu... 163 6e-39
gb|AAF65741.1|AF228525_11 (AF228525) F420H2 dehydrogenase subuni... 162 8e-39
pir||S77331 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 161 2e-38
gb|AAF13041.1|AF157639_1 (AF157639) putative formate hydrogenlya... 161 2e-38
pir||E83315 NADH dehydrogenase I chain M PA2648 [imported] - Pse... 160 5e-38
gi|11497577 NADH dehydrogenase ND5 subunit [Spinacia oleracea] >... 159 7e-38
gb|AAF08891.1|AF194860_1 (AF194860) NADH dehydrogenase [Cistanth... 159 9e-38
pir||G82822 NADH-ubiquinone oxidoreductase, NQO13 subunit XF0317... 159 9e-38
gb|AAF08854.1|AF194822_1 (AF194822) NADH dehydrogenase [Amaranth... 158 2e-37
gb|AAG26149.1| (AF123801) NADH dehydrogenase subunit F [Cabomba ... 158 2e-37
gb|AAF08868.1|AF194837_1 (AF194837) NADH dehydrogenase [Montiops... 158 2e-37
gb|AAF08861.1|AF194829_1 (AF194829) NADH dehydrogenase [Tetragon... 158 2e-37
emb|CAC12090.1| (AL445066) NADH dehydrogenase, chain L related p... 158 2e-37
gb|AAF37198.1| (AF191809) NADH dehydrogenase subunit F [Carex do... 158 2e-37
gb|AAF08880.1|AF194849_1 (AF194849) NADH dehydrogenase [Montiops... 157 3e-37
gb|AAF08872.1|AF194841_1 (AF194841) NADH dehydrogenase [Ceraria ... 157 3e-37
gb|AAF37201.1| (AF191812) NADH dehydrogenase subunit F [Carex sc... 157 3e-37
gb|AAF08881.1|AF194850_1 (AF194850) NADH dehydrogenase [Montiops... 157 3e-37
gb|AAF08888.1|AF194857_1 (AF194857) NADH dehydrogenase [Portulac... 157 3e-37
gb|AAF23618.1| (AF188183) NADH dehydrogenase [Gratiola pilosa] 157 3e-37
pir||S08621 probable hydrogenase 3 protein 3 - Escherichia coli ... 157 5e-37
gb|AAF08883.1|AF194852_1 (AF194852) NADH dehydrogenase [Pereskia... 157 5e-37
gb|AAA69233.1| (U29579) formate hydrogenlyase subunit 3 [Escheri... 157 5e-37
sp|P16429|HYCC_ECOLI FORMATE HYDROGENLYASE SUBUNIT 3 (FHL SUBUNI... 157 5e-37
gb|AAF08885.1|AF194854_1 (AF194854) NADH dehydrogenase [Portulac... 156 6e-37
gb|AAF08895.1|AF194864_1 (AF194864) NADH dehydrogenase [Talinum ... 156 6e-37
gb|AAF08898.1|AF194867_1 (AF194867) NADH dehydrogenase [Portulac... 156 6e-37
gb|AAF08897.1|AF194866_1 (AF194866) NADH dehydrogenase [Talinum ... 156 6e-37
gb|AAF08862.1|AF194830_1 (AF194830) NADH dehydrogenase [Talinum ... 156 8e-37
gb|AAF08853.1|AF194821_1 (AF194821) NADH dehydrogenase [Amaranth... 156 8e-37
gb|AAF37199.1| (AF191810) NADH dehydrogenase subunit F [Carex ec... 156 8e-37
gb|AAG12233.1| (AF163467) NADH dehydrogenase subunit F [Uncinia ... 156 8e-37
gb|AAF08871.1|AF194840_1 (AF194840) NADH dehydrogenase [Calyptri... 155 1e-36
gi|11466428 subunit 4 of NADH-plastoquinoneoxidoreductase [Mesos... 155 1e-36
gb|AAF08864.1|AF194832_1 (AF194832) NADH dehydrogenase [Alluaudi... 155 1e-36
gb|AAF08893.1|AF194862_1 (AF194862) NADH dehydrogenase [Talinell... 155 1e-36
gb|AAF08894.1|AF194863_1 (AF194863) NADH dehydrogenase [Talinops... 155 1e-36
gb|AAF37200.1| (AF191811) NADH dehydrogenase subunit F [Carex hu... 155 1e-36
gb|AAF08884.1|AF194853_1 (AF194853) NADH dehydrogenase [Portulac... 155 2e-36
sp|Q55429|NU5C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >... 155 2e-36
gb|AAF08873.1|AF194842_1 (AF194842) NADH dehydrogenase [Cistanth... 154 2e-36
gb|AAF03769.1| (AF147711) NADH dehydrogenase subunit [Exacum aff... 154 2e-36
gb|AAF08183.1| (AF130227) NADH dehydrogenase subunit F [Acer neg... 154 2e-36
gb|AAF08874.1|AF194843_1 (AF194843) NADH dehydrogenase [Cistanth... 154 2e-36
gb|AAF90041.2| (AF238055) NADH dehydrogenase subunit F [Hydrasti... 154 2e-36
gb|AAF08870.1|AF194839_1 (AF194839) NADH dehydrogenase [Calyptro... 154 2e-36
pir||E69033 NADH dehydrogenase I, subunit N - Methanobacterium t... 154 3e-36
gb|AAF08886.1|AF194855_1 (AF194855) NADH dehydrogenase [Portulac... 154 3e-36
gb|AAG12238.1| (AF163472) NADH dehydrogenase subunit F [Dulichiu... 154 3e-36
gb|AAF08856.1|AF194824_1 (AF194824) NADH dehydrogenase [Aptenia ... 154 3e-36
sp|P29925|NQOD_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 13 (NA... 153 4e-36
gb|AAF19430.1|AF206713_1 (AF206713) NADH dehydrogenase subunit F... 153 5e-36
gb|AAF08876.1|AF194845_1 (AF194845) NADH dehydrogenase [Didierea... 153 5e-36
pir||S75961 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 153 5e-36
gb|AAF08890.1|AF194859_1 (AF194859) NADH dehydrogenase [Talinum ... 153 5e-36
gb|AAG12210.1| (AF163444) NADH dehydrogenase subunit F [Carex me... 153 5e-36
emb|CAB65459.1| (AJ236276) NADH dehydrogenase subunit F [Sabia s... 153 5e-36
gb|AAF08860.1|AF194828_1 (AF194828) NADH dehydrogenase [Phytolac... 153 7e-36
pir||S74687 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 153 7e-36
gb|AAD52732.1|AF123674_1 (AF123674) NADH dehydrogenase [Amphiant... 153 7e-36
gb|AAF08875.1|AF194844_1 (AF194844) NADH dehydrogenase [Decarya ... 153 7e-36
gb|AAF08166.1| (AF130210) NADH dehydrogenase subunit F [Impatien... 152 9e-36
gb|AAF08878.1|AF194847_1 (AF194847) NADH dehydrogenase [Lewisia ... 152 9e-36
gb|AAG12236.1| (AF163470) NADH dehydrogenase subunit F [Eriophor... 152 9e-36
gb|AAF27223.1|AF111743_1 (AF111743) NADH dehydrogenase [Eriolaen... 152 9e-36
gb|AAG26159.1| (AF123811) NADH dehydrogenase subunit F [Saururus... 152 9e-36
gb|AAG12218.1| (AF163452) NADH dehydrogenase subunit F [Carex pa... 152 1e-35
pir||B75102 NADH dehydrogenase (ubiquinone) chain 4 related PAB0... 152 1e-35
gb|AAF08137.1| (AF130181) NADH dehydrogenase subunit F [Nymphoid... 152 1e-35
gb|AAF08867.1|AF194836_1 (AF194836) NADH dehydrogenase [Calandri... 152 1e-35
gb|AAG12213.1| (AF163447) NADH dehydrogenase subunit F [Carex el... 152 1e-35
gb|AAG12215.1| (AF163449) NADH dehydrogenase subunit F [Carex le... 152 1e-35
gb|AAF08877.1|AF194846_1 (AF194846) NADH dehydrogenase [Grahamia... 152 2e-35
gb|AAF27197.1|AF111716_1 (AF111716) NADH dehydrogenase [Abutilon... 152 2e-35
gb|AAF27211.1|AF111731_1 (AF111731) NADH dehydrogenase [Ceiba ro... 152 2e-35
gb|AAF27215.1|AF111735_1 (AF111735) NADH dehydrogenase [Sclerone... 152 2e-35
gb|AAF27224.1|AF111744_1 (AF111744) NADH dehydrogenase [Heritier... 152 2e-35
pir||T13248 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 152 2e-35
gb|AAF44116.1| (AF230257) NADH dehydrogenase [Kostermansia malay... 152 2e-35
gb|AAG12214.1| (AF163448) NADH dehydrogenase subunit F [Carex ha... 152 2e-35
gb|AAF08185.1| (AF130229) NADH dehydrogenase subunit F [Phytolac... 151 2e-35
gb|AAF27221.1|AF111741_1 (AF111741) NADH dehydrogenase [Patinoa ... 151 2e-35
gb|AAF27238.1|AF111759_1 (AF111759) NADH dehydrogenase [Cola acu... 151 2e-35
gb|AAF44113.1| (AF230254) NADH dehydrogenase [Cullenia ceylanica] 151 2e-35
gb|AAF44115.1| (AF230256) NADH dehydrogenase [Triplochiton zambe... 151 2e-35
pir||T13252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 151 3e-35
pir||T13253 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 151 3e-35
sp|P31978|NUOM_ECOLI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 151 3e-35
pir||E71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 151 3e-35
gi|7525082 NADH dehydrogenase ND5 [Arabidopsis thaliana] >gi|668... 151 3e-35
gb|AAF08151.1| (AF130195) NADH dehydrogenase subunit F [Symphori... 151 3e-35
gb|AAF08865.1|AF194834_1 (AF194834) NADH dehydrogenase [Basella ... 151 3e-35
gb|AAF08889.1|AF194858_1 (AF194858) NADH dehydrogenase [Quiabent... 151 3e-35
gb|AAF90035.1| (AF238049) NADH dehydrogenase subunit F [Arabidop... 151 3e-35
gb|AAG12211.1| (AF163445) NADH dehydrogenase subunit F [Carex an... 151 3e-35
gb|AAG12229.1| (AF163463) NADH dehydrogenase subunit F [Schoenox... 151 3e-35
pir||A48643 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 151 3e-35
emb|CAC14148.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 151 3e-35
pir||T13243 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 150 3e-35
gb|AAF08169.1| (AF130213) NADH dehydrogenase subunit F [Diospyro... 150 3e-35
gb|AAF08859.1|AF194827_1 (AF194827) NADH dehydrogenase [Mollugo ... 150 3e-35
gb|AAF27204.1|AF111724_1 (AF111724) NADH dehydrogenase [Matisia ... 150 3e-35
gb|AAF27216.1|AF111736_1 (AF111736) NADH dehydrogenase [Ceiba ac... 150 3e-35
gb|AAF44114.1| (AF230255) NADH dehydrogenase [Durio oxleyanus] 150 3e-35
gb|AAG12227.1| (AF163461) NADH dehydrogenase subunit F [Kobresia... 150 3e-35
gb|AAG19147.1| (AE005012) NADH dehydrogenase/oxidoreductase; Ndh... 150 3e-35
emb|CAC14150.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 150 3e-35
pir||T12763 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 150 4e-35
pir||T13235 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 150 4e-35
pir||T13242 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 150 4e-35
pir||T13373 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 150 4e-35
pir||T13282 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 150 4e-35
pir||T13766 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 150 4e-35
pir||T13768 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 150 4e-35
gb|AAD52735.1|AF123677_1 (AF123677) NADH dehydrogenase [Bacopa c... 150 4e-35
gb|AAD52750.1|AF123692_1 (AF123692) NADH dehydrogenase [Tetranem... 150 4e-35
gb|AAF08159.1| (AF130203) NADH dehydrogenase subunit F [Hedera h... 150 4e-35
gb|AAF27228.1|AF111748_1 (AF111748) NADH dehydrogenase [Brachych... 150 4e-35
gb|AAF27233.1|AF111754_1 (AF111754) NADH dehydrogenase [Hildegar... 150 4e-35
pir||T12629 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 149 1e-34
pir||T14236 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 149 1e-34
pir||G64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 149 1e-34
gb|AAF08178.1| (AF130222) NADH dehydrogenase subunit F [Heuchera... 149 1e-34
gb|AAF08896.1|AF194865_1 (AF194865) NADH dehydrogenase [Ullucus ... 149 1e-34
sp|Q9JX92|NUOL_NEIMA NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 149 1e-34
pir||E81251 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 148 1e-34
sp|Q9K1B0|NUOL_NEIMB NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 148 1e-34
gb|AAF44108.1| (AF230249) NADH dehydrogenase [Durio griffithii] 148 1e-34
pir||H81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain M... 148 1e-34
sp|P50974|NUOM_RHOCA NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 148 2e-34
pir||E81220 NADH dehydrogenase I, M chain NMB0258 [imported] - N... 148 2e-34
emb|CAB85647.1| (AJ238338) NADH dehydrogenase [Crispiloba disperma] 148 2e-34
gb|AAG19146.1| (AE005012) F420H2:quinone oxidoreductase chain M;... 148 2e-34
gb|AAF37197.1| (AF191808) NADH dehydrogenase subunit F [Carex di... 148 2e-34
gb|AAF44117.1| (AF230258) NADH dehydrogenase [Coelostegia bornee... 148 2e-34
gb|AAF08158.1| (AF130202) NADH dehydrogenase subunit F [Acanthop... 147 3e-34
gb|AAF08142.1| (AF130186) NADH dehydrogenase subunit F [Cyananth... 147 4e-34
gb|AAG19079.1| (AE005006) Vng0562c [Halobacterium sp. NRC-1] 147 4e-34
sp|P31971|NU5C_SYNP2 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >... 146 5e-34
gb|AAF08172.1| (AF130216) NADH dehydrogenase subunit F [Camellia... 146 5e-34
gb|AAF78991.1| (L75864) NADH dehydrogenase F [Glomeropitcairnia ... 146 5e-34
emb|CAC14149.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 146 5e-34
pir||T12193 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 146 7e-34
emb|CAB39559.1| (AJ225078) putative NADH dehydrogenase [Stylidiu... 146 7e-34
gb|AAF08139.1| (AF130183) NADH dehydrogenase subunit F [Pentaphr... 146 7e-34
gb|AAF27229.1|AF111749_1 (AF111749) NADH dehydrogenase [Durio zi... 146 7e-34
gb|AAF65739.1|AF228525_9 (AF228525) F420H2 dehydrogenase subunit... 146 7e-34
sp|Q56228|NQOD_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 13 (NA... 146 9e-34
gb|AAB09276.1| (U47428) NADH dehydrogenase subunit [Solanum beta... 146 9e-34
gb|AAB17613.1| (U72753) NADH dehydrogenase subunit [Solanum glau... 146 9e-34
gb|AAB17614.1| (U72749) NADH dehydrogenase subunit [Solanum lute... 146 9e-34
pir||B70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 146 9e-34
gb|AAG25137.1| (AF276021) NADH dehydrogenase subunit F [Tricyrti... 146 9e-34
gb|AAG25138.1| (AF276022) NADH dehydrogenase subunit F [Tricyrti... 146 9e-34
emb|CAC17812.1| (AJ400887) NADH dehydrogenase subunit F [Tetrame... 146 9e-34
gi|11466747 ndh5 [Marchantia polymorpha] >gi|128768|sp|P06264|NU... 145 1e-33
pir||T34612 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 145 1e-33
emb|CAB59327.1| (AJ236304) NADH dehydrogenase subunit F [Pentas ... 145 1e-33
gb|AAF08160.1| (AF130204) NADH dehydrogenase subunit F [Panax gi... 145 1e-33
pir||T12297 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 145 1e-33
gb|AAF08153.1| (AF130197) NADH dehydrogenase subunit F [Viburnum... 145 1e-33
emb|CAB39558.1| (AJ225079) putative NADH dehydrogenase [Stylidiu... 145 2e-33
emb|CAB64689.1| (AJ235829) NADH dehydrogenase, putative [Anthocl... 145 2e-33
gb|AAF78990.1| (L75865) NADH dehydrogenase F [Guzmania monostachya] 145 2e-33
emb|CAB52783.1| (AJ243656) transmembrane protein 53.3 kDa (conse... 144 3e-33
gb|AAF78973.1| (L75899) NADH dehydrogenase F [Tillandsia complan... 144 3e-33
gb|AAF79008.1| (L75936) NADH dehydrogenase F [Tillandsia hamaleana] 144 3e-33
pir||T12677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 144 3e-33
pir||A70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 144 3e-33
gb|AAF22422.1|AF047815_1 (AF047815) NADH dehydrogenase [Emmenant... 144 3e-33
gb|AAF25171.1|AF182343_1 (AF182343) NADH dehydrogenase [Sucrea m... 144 3e-33
gb|AAF79015.1| (L75935) NADH dehydrogenase F [Guzmania sanguinea] 144 3e-33
gb|AAF79018.1| (L75932) NADH dehydrogenase F [Guzmania nicarague... 144 3e-33
emb|CAC03491.1| (AJ245816) NADH dehydrogenase subunit [Kickxia e... 144 3e-33
gb|AAG19145.1| (AE005012) F420H2:quinone oxidoreductase chain L;... 144 3e-33
gb|AAF79014.1| (L75904) NADH dehydrogenase F [Guzmania spectabilis] 143 4e-33
gb|AAG34770.1| (AF207968) NADH dehydrogenase subunit F [Cobaea s... 143 4e-33
pir||T13393 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 143 6e-33
emb|CAB89015.1| (AL353870) probable NADH dehydrogenase I complex... 143 6e-33
gb|AAF78974.1| (L75897) NADH dehydrogenase F [Ronnbergia petersii] 143 6e-33
gb|AAF78999.1| (L75912) NADH dehydrogenase F [Vriesea espinosae] 143 6e-33
gb|AAF79007.1| (L75937) NADH dehydrogenase F [Tillandsia secunda] 143 6e-33
pir||T13391 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 143 8e-33
pir||H64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 143 8e-33
sp|O86350|NUOL_MYCTU NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 143 8e-33
gi|11467867 subunit 4 of NADH-plastoquinoneoxidoreductase [Nephr... 143 8e-33
gi|11466446 subunit 5 of NADH-plastoquinoneoxidoreductase [Mesos... 143 8e-33
gb|AAF79016.1| (L75934) NADH dehydrogenase F [Guzmania rhonhofiana] 143 8e-33
gb|AAG25114.1| (AF275997) NADH dehydrogenase subunit F [Calochor... 143 8e-33
pir||T13665 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 142 1e-32
emb|CAB59307.1| (AJ236287) NADH dehydrogenase subunit F [Carphal... 142 1e-32
gb|AAF08164.1| (AF130208) NADH dehydrogenase subunit F [Phyllono... 142 1e-32
gb|AAG25126.1| (AF276010) NADH dehydrogenase subunit F [Tulipa p... 142 1e-32
gb|AAF08148.1| (AF130192) NADH dehydrogenase subunit F [Valerian... 142 1e-32
gb|AAF08149.1| (AF130193) NADH dehydrogenase subunit F [Abelia g... 142 1e-32
gb|AAF79004.1| (L75898) NADH dehydrogenase F [Tillandsia bergeri] 142 1e-32
pir||T12221 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 141 2e-32
gb|AAF79011.1| (L75880) NADH dehydrogenase F [Tillandsia fraseri] 141 2e-32
gb|AAF79012.1| (L75879) NADH dehydrogenase F [Tillandsia dodsonii] 141 2e-32
gb|AAB48066.1| (L36393) NADH dehydrogenase subunit [Borago offic... 141 2e-32
pir||B70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 141 2e-32
pir||H71084 hypothetical protein PH0941 - Pyrococcus horikoshii ... 141 2e-32
pir||T12559 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 141 2e-32
gb|AAF79005.1| (L75939) NADH dehydrogenase F [Tillandsia utricul... 141 2e-32
gi|11467595 NADH dehydrogenase, subunit 4 [Allomyces macrogynus]... 141 3e-32
emb|CAB59298.1| (AJ236284) NADH dehydrogenase subunit F [Anthosp... 141 3e-32
gb|AAF22390.1|AF047783_1 (AF047783) NADH dehydrogenase [Hesperoc... 141 3e-32
gb|AAF79010.1| (L75881) NADH dehydrogenase F [Tillandsia funckiana] 141 3e-32
pir||T13503 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 140 4e-32
gi|11467058 NADH dehydrogenase, subunit 2 [Acanthamoeba castella... 140 5e-32
sp|P50367|NU5M_RHIST NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 140 5e-32
pir||B82495 probable NADH dehydrogenase VCA0157 [imported] - Vib... 140 5e-32
pir||S38322 NADH dehydrogenase I chain nuoM - Escherichia coli (... 139 7e-32
pir||F71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 139 7e-32
gb|AAF22389.1|AF047782_1 (AF047782) NADH dehydrogenase [Nemophil... 139 7e-32
pir||D70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 139 9e-32
pir||F82822 NADH-ubiquinone oxidoreductase, NQO12 subunit XF0316... 139 9e-32
emb|CAA76117.1| (Y16191) echA [Methanosarcina barkeri] 139 1e-31
emb|CAB59326.1| (AJ236307) NADH dehydrogenase subunit F [Psychot... 139 1e-31
pir||A75390 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 139 1e-31
pir||F81220 NADH dehydrogenase I, N chain NMB0259 [imported] - N... 138 1e-31
pir||E83514 probable NADH dehydrogenase PA1056 [imported] - Pseu... 138 1e-31
pir||T03467 NADH dehydrogenase (ubiquinone) chain 5 homolog - Rh... 137 4e-31
gi|11467100 nad4 [Marchantia polymorpha] >gi|464242|sp|P26848|NU... 136 6e-31
emb|CAB59310.1| (AJ236293) NADH dehydrogenase subunit F [Danais ... 136 7e-31
pir||G81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 136 7e-31
sp|P50973|NUON_RHOCA NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO... 136 1e-30
pir||F72619 probable NADH dehydrogenase (ubiquinone) chain 13 AP... 136 1e-30
gb|AAF79013.1| (L75905) NADH dehydrogenase F [Guzmania wittmackii] 136 1e-30
gi|11467868 subunit 5 of NADH-plastoquinoneoxidoreductase [Nephr... 135 1e-30
pir||S38321 NADH dehydrogenase I chain nuoL - Escherichia coli >... 135 2e-30
pir||T12293 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 135 2e-30
gb|AAF03176.1|AF110138_8 (AF110138) NADH dehydrogenase subunit 4... 135 2e-30
gi|9695393 NADH dehydrogenase subunit 5 [Phytophthora infestans]... 134 3e-30
sp|Q9XAR5|NUOL_STRCO NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 134 3e-30
gi|7525085 NADH dehydrogenase ND4 [Arabidopsis thaliana] >gi|668... 134 3e-30
gb|AAF79017.1| (L75933) NADH dehydrogenase F [Guzmania plicatifo... 134 4e-30
sp|Q56227|NQOC_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 12 (NA... 133 5e-30
sp|P33607|NUOL_ECOLI NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 133 5e-30
gi|11467054 NADH dehydrogenase, subunit 5 [Acanthamoeba castella... 133 6e-30
pir||G75389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 132 8e-30
gb|AAF79006.1| (L75938) NADH dehydrogenase F [Tillandsia trichol... 132 8e-30
pir||A39366 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 132 1e-29
sp|P72714|NU2C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2 >... 132 1e-29
emb|CAB59322.1| (AJ236300) NADH dehydrogenase subunit F [Morinda... 132 1e-29
emb|CAC12089.1| (AL445066) NADH dehydrogenase, chain M related p... 131 2e-29
pir||T34611 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 131 2e-29
emb|CAB59333.1| (AJ236309) NADH dehydrogenase subunit F [Spermac... 131 3e-29
gb|AAF03175.1|AF110138_7 (AF110138) NADH dehydrogenase subunit 5... 130 4e-29
sp|P10330|NU5M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 129 7e-29
pir||T12400 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 129 1e-28
gi|11465633 NADH dehydrogenase subunit 2 [Porphyra purpurea] >gi... 129 1e-28
gi|11466471 NADH dehydrogenase subunit 4 [Chrysodidymus synuroid... 129 1e-28
gb|AAG23669.1|AF288091_14 (AF288091) NADH dehydrogenase subunit ... 129 1e-28
gi|11467099 nad5 [Marchantia polymorpha] >gi|464247|sp|P26849|NU... 129 1e-28
sp|P29801|NU2C_SYNP7 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2 >... 128 2e-28
sp|Q9PMA7|NUOL_CAMJE NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 128 2e-28
gi|11465866 NADH dehydrogenase subunit 5 [Ochromonas danica] >gi... 128 2e-28
gi|7524971 NADH dehydrogenase subunit 4 [Dictyostelium discoideu... 127 4e-28
gi|11465635 NADH dehydrogenase subunit 4 [Porphyra purpurea] >gi... 127 4e-28
pir||DNMUU5 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 126 6e-28
gi|11497458 NADH deydrogenase (ubiquinone), subunit 5 [Protothec... 126 6e-28
gi|11466188 NADH dehydrogenase subunit 5 [Naegleria gruberi] >gi... 126 6e-28
gi|9838484 NADH dehydrogenase subunit 5 [Beta vulgaris] >gi|9087... 126 8e-28
emb|CAC08261.1| (AL392146) NADH dehydrogenase subunit [Streptomy... 126 8e-28
gi|11466666 NADH dehydrogenase subunit 4 [Malawimonas jakobiform... 126 8e-28
gi|11497581 NADH dehydrogenase ND4 subunit [Spinacia oleracea] >... 125 1e-27
gi|11466579 NADH dehydrogenase subunit 5 [Rhodomonas salina] >gi... 125 1e-27
pir||D83315 NADH dehydrogenase I chain L PA2647 [imported] - Pse... 125 1e-27
gi|11466663 NADH dehydrogenase subunit 5 [Malawimonas jakobiform... 125 1e-27
gi|11466906 NADH-ubiquinone oxidoreductase subunit 5 [Podospora ... 124 2e-27
sp|P29388|NU5M_ARATH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 124 2e-27
pir||T12399 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 124 2e-27
pir||S14115 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 124 2e-27
emb|CAC12088.1| (AL445066) NADH dehydrogenase, chain N related p... 124 2e-27
gb|AAK40663.1| NADH dehydrogenase subunit L (NuoL) [Sulfolobus ... 124 3e-27
gi|6137793 NADH dehydrogenase subunit 4 [Metridium senile] >gi|3... 124 3e-27
sp|P77416|HYFD_ECOLI HYDROGENASE-4 COMPONENT D >gi|7466377|pir||... 124 3e-27
gi|11466311 NADH dehydrogenase subunit 5 [Cafeteria roenbergensi... 124 3e-27
gi|11466469 NADH dehydrogenase subunit 5 [Chrysodidymus synuroid... 124 3e-27
gi|6137788 NADH dehydrogenase subunit 5 [Metridium senile] >gi|3... 123 5e-27
pir||A72281 hypothetical protein TM1211 - Thermotoga maritima (s... 123 5e-27
pir||JQ1447 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 123 7e-27
gi|11467594 NADH dehydrogenase, subunit 2 [Allomyces macrogynus]... 123 7e-27
sp|Q37680|NU5M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 123 7e-27
sp|P05510|NU5M_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 122 9e-27
gi|11466667 NADH dehydrogenase subunit 2 [Malawimonas jakobiform... 122 1e-26
gi|11466552 NADH dehydrogenase, subunit 4 [Reclinomonas american... 122 2e-26
pir||S62707 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 121 2e-26
pir||T17022 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 121 2e-26
pir||T14241 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 121 2e-26
pir||S04724 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 121 3e-26
sp|P11628|NU5M_EMENI NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 121 3e-26
gi|11467581 NADH dehydrogenase, subunit 5 [Allomyces macrogynus]... 120 5e-26
prf||2204231G NADH ubiquinone oxidoreductase [Rhodobacter capsul... 120 6e-26
sp|P50939|NUOL_RHOCA NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 120 6e-26
gi|7525007 NADH dehydrogenase subunit 5 [Dictyostelium discoideu... 120 6e-26
sp|P50368|NU5M_SCHCO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 119 8e-26
gi|11466551 NADH dehydrogenase, subunit 5 [Reclinomonas american... 118 2e-25
gb|AAD52915.1|AF152244_2 (AF152244) NADH dehydrogenase subunit 2... 118 2e-25
dbj|BAA92804.1| (AB005745) NADH dehydrogenase subunit 5 [Loligo ... 117 3e-25
gi|9790634 NADH dehydrogenase subunit 5 [Loligo bleekeri] >gi|96... 117 3e-25
pir||B72619 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 116 5e-25
sp|P29924|NQOC_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 12 (NA... 116 5e-25
emb|CAA73263.1| (Y12731) NADH ubiquinone oxidoreductase subunit ... 116 5e-25
pir||T12401 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 116 7e-25
gi|11465636 NADH dehydrogenase subunit 5 [Porphyra purpurea] >gi... 116 7e-25
pir||S38992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 116 9e-25
gi|11467244 NADH dehydrogenase ND2 [Zea mays] >gi|11467270|ref|N... 116 9e-25
gi|11466400 subunit 2 of NADH-plastoquinoneoxidoreductase [Mesos... 116 9e-25
pir||H75060 hydrogenase (EC 1.-.-.-) 4 component D PAB1391 [impo... 115 1e-24
gi|11467787 subunit 2 of NADH-plastoquinoneoxidoreductase [Nephr... 115 1e-24
pir||S65076 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 115 2e-24
gi|9695386 NADH dehydrogenase subunit 2 [Phytophthora infestans]... 114 3e-24
gi|11466835 NADH dehydrogenase ND2 [Oryza sativa] >gi|11466862|r... 114 4e-24
pir||H75389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 114 4e-24
gi|11467925 NADH dehydrogenase subunit 4 [Scenedesmus obliquus] ... 113 5e-24
pir||S65075 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 113 6e-24
gb|AAD28444.1|AF126026_1 (AF126026) NADH dehydrogenase subunit 2... 113 6e-24
emb|CAA05498.1| (AJ002490) ndhB [Arabidopsis thaliana] 111 2e-23
gi|7525078 NADH dehydrogenase ND2 [Arabidopsis thaliana] >gi|752... 111 2e-23
pir||F70749 probable hycQ protein - Mycobacterium tuberculosis (... 111 3e-23
pir||B24707 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 110 5e-23
emb|CAA38641.1| (X54860) mitochondrial NADH dehydrogenase subun... 110 5e-23
pir||S41639 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 109 7e-23
prf||1204259B URF5 [Chlamydomonas reinhardtii] 109 7e-23
gi|5835098 NADH dehydrogenase subunit 5 [Katharina tunicata] >gi... 109 7e-23
gi|11467091 NADH dehydrogenase subunit 5 [Chlamydomonas reinhard... 109 7e-23
gi|5835775 NADH dehydrogenase subunit 5 [Orycteropus afer] >gi|7... 109 7e-23
emb|CAB67207.1| (AJ271079) NADH-plastoquinone oxidoreductase sub... 109 9e-23
gi|11466005 NADH dehydrogenase ND2 subunit [Nicotiana tabacum] >... 109 1e-22
gi|11466057 NADH dehydrogenase subunit 5 [Pichia canadensis] >gi... 108 2e-22
pir||T03469 probable hydrogenase - Rhodobacter capsulatus >gi|31... 108 3e-22
gi|5836083 NADH dehydrogenase subunit 5 [Raja radiata] >gi|74325... 103 5e-21
gb|AAK41284.1| Formate hydrogenlyase subunit 3 (hycC) [Sulfolobu... 102 9e-21
pir||T43694 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 102 2e-20
gi|11465924 NADH dehydrogenase subunit 5 [Pedinomonas minor] >gi... 102 2e-20
gi|5835551 NADH dehydrogenase subunit 5 [Alligator mississippien... 101 3e-20
gi|8404660 NADH dehydrogenase subunit 5 [Laqueus rubellus] >gi|7... 101 3e-20
gi|5835328 NADH dehydrogenase subunit 5 [Polypterus ornatipinnis... 101 3e-20
pir||DENTN2 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 98 2e-19
sp|O79881|NU4M_PIG NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 >gi|37... 98 4e-19
gb|AAG28186.1|AF304200_10 (AF304200) NADH4 [Sus scrofa] >gi|1105... 98 4e-19
gb|AAG28199.1|AF304201_10 (AF304201) NADH4 [Sus scrofa] 98 4e-19
gb|AAC24029.1| (AF034751) NADH subunit 5 [Osmerus mordax] 97 5e-19
gb|AAG00209.1| (AF273112) NADH dehydrogenase subunit 4 [Ochotona... 97 5e-19
gi|5835817 NADH dehydrogenase subunit 5 [Gadus morhua] >gi|24992... 96 9e-19
gi|5835872 NADH dehydrogenase subunit 4 [Sus scrofa] >gi|7432365... 96 9e-19
gb|AAF72053.1|AF204057_8 (AF204057) NADH dehydrogenase subunit 5... 96 1e-18
gi|9801580 NADH dehydrogenase subunit 4 [Lama pacos] >gi|9558353... 96 2e-18
gi|5835187 NADH dehydrogenase subunit 4 [Rattus norvegicus] >gi|... 95 3e-18
gi|11467931 NADH dehydrogenase subunit 5 [Scenedesmus obliquus] ... 95 3e-18
gi|11465918 NADH dehydrogenase subunit 5 [Chlamydomonas eugameto... 94 3e-18
gi|6691433 NADH dehydrogenase subunit 5 [Lampetra fluviatilis] >... 94 3e-18
gb|AAG00215.1| (AF273118) NADH dehydrogenase subunit 4 [Ochotona... 94 3e-18
gi|5835675 NADH dehydrogenase subunit 4 [Artibeus jamaicensis] >... 93 8e-18
gi|7555772 NADH dehydrogenase subunit 5 [Ciconia boyciana] >gi|7... 93 8e-18
gb|AAG00216.1| (AF273119) NADH dehydrogenase subunit 4 [Ochotona... 93 1e-17
gb|AAG00227.1| (AF273130) NADH dehydrogenase subunit 4 [Ochotona... 92 1e-17
gb|AAG00212.1| (AF273115) NADH dehydrogenase subunit 4 [Ochotona... 92 2e-17
gb|AAD15023.1| (J01435) unknown protein [Rattus norvegicus] 91 3e-17
pir||S75962 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 90 9e-17
gb|AAF77285.1| (AF200832) NADH dehydrogenase subunit 4 [Drosophi... 89 2e-16
dbj|BAA87027.1| (AB027599) NADH dehydrogenase subunit 5 [Ornitho... 85 2e-15
dbj|BAA87030.1| (AB027602) NADH dehydrogenase subunit 5 [Ornitho... 85 2e-15
gi|5881416 NADH dehydrogenase subunit 4 [Branchiostoma floridae]... 85 3e-15
gi|5835523 NADH dehydrogenase subunit 4 [Branchiostoma lanceolat... 84 5e-15
prf||1211235DE NADH dehydrogenase 2-like ORF 260 [Nicotiana taba... 82 2e-14
sp|Q01561|NU5M_TRIRU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 81 4e-14
gi|11499414 F420H2:quinone oxidoreductase, 72.4 kDa subunit (nuo... 80 6e-14
>pir||G75113 NADH dehydrogenase I chain M PAB0490 - Pyrococcus abyssi (strain
Orsay) >gi|5458135|emb|CAB49624.1| (AJ248285) NADH
DEHYDROGENASE I SUBUNIT M [Pyrococcus abyssi]
Length = 618
Score = 1221 bits (3124), Expect = 0.0
Identities = 618/618 (100%), Positives = 618/618 (100%)
Query: 1 MNELLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTITV 60
MNELLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTITV
Sbjct: 1 MNELLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTITV 60
Query: 61 GGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTGALGIFTAQDL 120
GGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTGALGIFTAQDL
Sbjct: 61 GGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTGALGIFTAQDL 120
Query: 121 VVFFIFWEIMTFASFMMVLKFNRAASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDIS 180
VVFFIFWEIMTFASFMMVLKFNRAASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDIS
Sbjct: 121 VVFFIFWEIMTFASFMMVLKFNRAASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDIS 180
Query: 181 AFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTA 240
AFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTA
Sbjct: 181 AFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTA 240
Query: 241 IFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQ 300
IFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQ
Sbjct: 241 IFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQ 300
Query: 301 EDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYRTGK 360
EDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYRTGK
Sbjct: 301 EDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYRTGK 360
Query: 361 TEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPILGGMVFF 420
TEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPILGGMVFF
Sbjct: 361 TEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPILGGMVFF 420
Query: 421 GSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLNVVFGVAPGIIAKEL 480
GSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLNVVFGVAPGIIAKEL
Sbjct: 421 GSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLNVVFGVAPGIIAKEL 480
Query: 481 NAIFGRTVIGGNIWELELGFGRYNALLVTIWLVIGLLIAGILYFLGASTRKVPVTDTYQS 540
NAIFGRTVIGGNIWELELGFGRYNALLVTIWLVIGLLIAGILYFLGASTRKVPVTDTYQS
Sbjct: 481 NAIFGRTVIGGNIWELELGFGRYNALLVTIWLVIGLLIAGILYFLGASTRKVPVTDTYQS 540
Query: 541 GNPVTMDYNLTIRRNFFLPLKEAVAFWLRISFDKLYRDVWKSIEDFAETARNYIYNGNVQ 600
GNPVTMDYNLTIRRNFFLPLKEAVAFWLRISFDKLYRDVWKSIEDFAETARNYIYNGNVQ
Sbjct: 541 GNPVTMDYNLTIRRNFFLPLKEAVAFWLRISFDKLYRDVWKSIEDFAETARNYIYNGNVQ 600
Query: 601 AYAWYLAIILLILAAMGV 618
AYAWYLAIILLILAAMGV
Sbjct: 601 AYAWYLAIILLILAAMGV 618
>pir||F71019 hypothetical protein PH1451 - Pyrococcus horikoshii
>gi|3257875|dbj|BAA30558.1| (AP000006) 617aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 617
Score = 1086 bits (2778), Expect = 0.0
Identities = 530/618 (85%), Positives = 577/618 (92%), Gaps = 1/618 (0%)
Query: 1 MNELLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTITV 60
MNELLL + FSPLVAG LAWL ++G+RE +G++GA++PL LIKLYPSL + TI++
Sbjct: 1 MNELLL-ITFSPLVAGVLAWLVRIRGVRESLGILGAIVPLAFLIKLYPSLDHPIRATISL 59
Query: 61 GGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTGALGIFTAQDL 120
GGF+LGF MSHLNW+FSMIAAVVG+SA+ GM STAKD YEWLF+LMSLTGALGIF AQDL
Sbjct: 60 GGFELGFSMSHLNWVFSMIAAVVGLSAVFGMASTAKDSYEWLFSLMSLTGALGIFMAQDL 119
Query: 121 VVFFIFWEIMTFASFMMVLKFNRAASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDIS 180
V FFIFWE+MTF+SFMMVLKFNRAASLKY +LSI+GAY+MLVAIG+IYAKTG+F+F+DIS
Sbjct: 120 VTFFIFWEVMTFSSFMMVLKFNRAASLKYLILSIIGAYSMLVAIGIIYAKTGTFTFADIS 179
Query: 181 AFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTA 240
AFF KEA+ MLGG FS+ D+ALIYLLFL+AFGVKAGMFPLHVWAPDAYSETDQSYTA
Sbjct: 180 AFFRKEAMLAMLGGKSTFSRFDMALIYLLFLMAFGVKAGMFPLHVWAPDAYSETDQSYTA 239
Query: 241 IFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQ 300
IFSGVLSK GVYGFILLY+LMYGKLLIDLGQ + P FGY+IAFLGGLTII+GG+LAALQ
Sbjct: 240 IFSGVLSKTGVYGFILLYVLMYGKLLIDLGQFKGTPLFGYIIAFLGGLTIIIGGVLAALQ 299
Query: 301 EDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYRTGK 360
EDIR+LFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFL+VAT+IYRTGK
Sbjct: 300 EDIRKLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLVVATIIYRTGK 359
Query: 361 TEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPILGGMVFF 420
TEFKDFGGLAEKMPFTF MAFIAILSLAGIPPLVGFASKWLIFEAVISQ LPILGGM+FF
Sbjct: 360 TEFKDFGGLAEKMPFTFAMAFIAILSLAGIPPLVGFASKWLIFEAVISQKLPILGGMLFF 419
Query: 421 GSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLNVVFGVAPGIIAKEL 480
GSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGM ILGTLNVVFGVAPG++AKEL
Sbjct: 420 GSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMGILGTLNVVFGVAPGLVAKEL 479
Query: 481 NAIFGRTVIGGNIWELELGFGRYNALLVTIWLVIGLLIAGILYFLGASTRKVPVTDTYQS 540
NAIFG VIGGNIWEL+LGFGRYNALLV IWLVIG+LIA ILYFLGASTRKVPVTDTYQS
Sbjct: 480 NAIFGNPVIGGNIWELDLGFGRYNALLVAIWLVIGVLIAAILYFLGASTRKVPVTDTYQS 539
Query: 541 GNPVTMDYNLTIRRNFFLPLKEAVAFWLRISFDKLYRDVWKSIEDFAETARNYIYNGNVQ 600
GNPVTM+YNLTIRRNFFLPLKE +AFWLRISFDKLY+D WK+IEDFAETARNYIYNGNVQ
Sbjct: 540 GNPVTMEYNLTIRRNFFLPLKETMAFWLRISFDKLYKDTWKAIEDFAETARNYIYNGNVQ 599
Query: 601 AYAWYLAIILLILAAMGV 618
AYAWYLAIILLILAAMGV
Sbjct: 600 AYAWYLAIILLILAAMGV 617
>pir||B72281 hypothetical protein TM1212 - Thermotoga maritima (strain MSB8)
>gi|4981765|gb|AAD36287.1|AE001778_8 (AE001778) NADH
dehydrogenase, putative [Thermotoga maritima]
Length = 626
Score = 261 bits (661), Expect = 1e-68
Identities = 173/594 (29%), Positives = 297/594 (49%), Gaps = 46/594 (7%)
Query: 49 SLGQGVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAIL---GMVSTAKDGYEW-LFA 104
+L G + + G + F +++++ FS ++ +V VS +L + T K + +F
Sbjct: 45 TLKVGTFEKLDLFGLNIQFEWTNVSFYFSFVSLLVIVSVMLFSTKWLETQKYRASYNMFL 104
Query: 105 LMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMV---LKFNRAASLKYFLLSIMGAYAML 161
LM G+LG+F A DL+ ++FWEI +S ++V K R A + Y ++S +G YA L
Sbjct: 105 LMVTAGSLGVFMAADLITLYVFWEIAVLSSLLIVPMEKKEARKAVVVYAVMSAVGTYAFL 164
Query: 162 VAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMF 221
L Y + G+ + I+ ML T K+ V +LL A K+G+F
Sbjct: 165 YGTFLAYQRYGTLNIHGIA--------QGMLNDTSIGFKMAV---FLLLSAAGIAKSGIF 213
Query: 222 PLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFIL-LYILMYGKLLIDLGQVRSAPAFGY 280
PLH+W + + +++++ SG K G Y F+L L ++ K+ ++ P Y
Sbjct: 214 PLHIWLRETHGLAPNAFSSVLSGQFIKLGNYIFLLVLSVIPSLKVFSEVTVYSGIPLPNY 273
Query: 281 VIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISH 340
++ LG ++I++G ++A Q+D++ L AYSS++ GYIL+G+G LG E ++H +H
Sbjct: 274 ILIALGNVSIVIGTLMAIKQDDMKMLMAYSSVANGGYILIGIGTMDPLGFEGGMFHIFNH 333
Query: 341 ALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKW 400
A+ + F+ A +IYRT + + GGL KMP TF + +I+SLAGIPP+ GF SKW
Sbjct: 334 AVASAVIFMAFAAVIYRTKTQKISEMGGLIHKMPVTFLVYLFSIISLAGIPPMSGFISKW 393
Query: 401 LIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMA 460
+I++A++ + + I + FFGS F+Y+ R V+ GQ P D K+AP + M
Sbjct: 394 MIYQALVRKGMFITAFLAFFGSIGSFLYVFRPLAGVFLGQLPRKYRDVKEAPAVMLTPMV 453
Query: 461 ILGTLNVVFGVAPGIIAKELNAIFGRTVIGGNI-------WELELGFGRYNALLVTIWLV 513
+L ++ GV P I + + I + + W ++ G +N +LV +
Sbjct: 454 LLVLISFFLGVWPFPILQAIEKIRVDLDVAPSFKISDPENWLVKGFAGSWNPVLVFGLFL 513
Query: 514 IGLLIAGILYFLGASTRKVPV----------TDTYQSG----NPVTMDYNLTIRRNFFLP 559
+G ++A ILY L +KV + + Y G NP YN F
Sbjct: 514 VGFIVAYILYSLFPRPKKVDLLAPHREEGTPINIYTGGEFIYNPDLYHYNTKFYAGFERM 573
Query: 560 LKEAVAFWLRISFDKLYRDVWKSIEDFAETARNYIYNGNVQAYAWYLAIILLIL 613
++ S++KL + K D E ++ + + AY +++ + LL++
Sbjct: 574 YEK------HPSWEKLLKMFGKLFHDAGEWIHSWFFEPSSSAYTFWVVVTLLLV 621
>pir||T51314 probable CO-induced hydrogenase complex chain CooM [imported] -
Rhodospirillum rubrum >gi|1515466|gb|AAC45116.1|
(U65510) CooM [Rhodospirillum rubrum]
Length = 1265
Score = 231 bits (582), Expect = 2e-59
Identities = 152/476 (31%), Positives = 237/476 (48%), Gaps = 41/476 (8%)
Query: 7 AVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTITVGGFKLG 66
A + P V GF +LF G A +G I L T T+
Sbjct: 231 APVLLPYVGGFALFLF---------GRFSAQARAVGAIALA---------TATLALVAAR 272
Query: 67 FMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGY---EWLFALMSLTGAL-GIFTAQDLVV 122
L +F++I A +G++ + V K G+ + F L + G+L G+ T L
Sbjct: 273 LESGDLGGLFALIFAAIGLAVTVYSVGYMKHGHGVNRYFFFLFLMIGSLIGVATTNHLGN 332
Query: 123 FFIFWEIMTFASFMMVLKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSD 178
F++FWE+MT+ S+++V+ A A +KYFL+ GAY M I +++A+ G+F S+
Sbjct: 333 FYLFWELMTWMSYLLVIHEQTAKALKAGMKYFLICASGAYVMHFGILVLHAQLGTFEISE 392
Query: 179 ISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSY 238
I+ G +S L G ++ FL+ F KAG+FPL+ W P+A+ S
Sbjct: 393 IAPCIG--TLSPALAG----------VVLATFLIGFMAKAGLFPLYSWLPEAHPVAPSSI 440
Query: 239 TAIFSGVLSKAGVYGFILLYILMYGK-LLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILA 297
+ SG+L+KAG+ G + L ++G L G G V+ LGG+T+++G + A
Sbjct: 441 SGPMSGILTKAGILGMVKLLFGIFGVGALGQFGLFAGLSLPGAVLVALGGITLLLGEVQA 500
Query: 298 ALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYR 357
Q DI+RL AYS+++Q+G I + LG+GTSL + ++H +HA+ K + F V LI R
Sbjct: 501 YRQTDIKRLLAYSTLAQIGEITMVLGVGTSLALAGGLFHVTNHAVMKTMLFFAVGALILR 560
Query: 358 TGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPILGGM 417
+ D GL + MPFT I +L++ G+PP GF SK+L+ A + + +
Sbjct: 561 SAGRSLDDLKGLGKVMPFTGLCLGIGLLAIMGVPPFGGFVSKFLMIYACVEAGQVGVAAV 620
Query: 418 VFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLNVVFGVAP 473
+ GS IG +Y R AV+F P +APL + I + L + V GV P
Sbjct: 621 ILVGSVIGALYYARVLRAVFF--EPYTGPKVVEAPLTMRIALGALAGVVVFTGVYP 674
Score = 192 bits (483), Expect = 1e-47
Identities = 142/518 (27%), Positives = 238/518 (45%), Gaps = 45/518 (8%)
Query: 34 IGALIPLIGLIKLYPSLGQGVSYTITVGGFKLGFMMSHLNWI-------------FSMIA 80
+ ALI ++G + +Y G T+ G + M L I F+ +
Sbjct: 708 LAALIAVVGAVVVYIL---GKRSTVVAGSLSVAVMALALAGILIQSGRYDLLSFWFAALI 764
Query: 81 AVVGVSAILGMVSTAKDGYE----WLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFM 136
VVG +L + G+ + F +M + G LG+ + DL FF FWE+M+ +
Sbjct: 765 VVVGAINLLYSIGYMAHGHAQNRFFFFFVMMIGGLLGVTASDDLFNFFAFWEVMSSWTLY 824
Query: 137 MVL-----KFNRAASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTM 191
+V+ K + KYF+ + +GA + + + ++ AK G+F A + A+S
Sbjct: 825 LVIIHEETKDSLDEGTKYFIFNFVGASFLFLGVAILAAKAGTFEM----ALLPQAALSMP 880
Query: 192 LGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGV 251
+G +A+ L L +KA PL + + + S VL K G
Sbjct: 881 VGW--------LAVSAGLILAGLLMKAAQLPLRIDYQMHPAPAPTPVSGYISAVLLKVGP 932
Query: 252 YGFILLYILMY--GKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAY 309
YG + + + + G L G P V+ + LT++ G +A +Q ++RL Y
Sbjct: 933 YGVLKIMVALGAGGGLARIAGLGAWMPDPLVVVQVIAALTVLYAGAMAVVQNGVKRLLIY 992
Query: 310 SSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGL 369
S++SQ+GY+L+GL +G++LG+ + H ++H + K + FL ++ + D GGL
Sbjct: 993 STVSQLGYVLLGLSLGSALGVAGGLMHFVNHMMLKDILFLAAGCILAQAHVHSLDDLGGL 1052
Query: 370 AEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYL 429
KMP TF + A LSL+GIPP GFASKWLI++ +L S +
Sbjct: 1053 GRKMPITFGLFLFAGLSLSGIPPFNGFASKWLIYQGAFQGGHYLLAMAALMSSLFTLAAV 1112
Query: 430 IRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLNVVFGVAPGII---AKELNAIFGR 486
++FT++ + G ++AP + I M +L +V+ GV PG+ + A G
Sbjct: 1113 LKFTHSAFLGPLSPAAATMREAPPVMLIPMGLLAAGSVIVGVFPGVALVPISRIQAALGL 1172
Query: 487 TVIGGNIWELELGFGRYNALLVTIWL-VIGLLIAGILY 523
VI + G G ++ L +T+ L +GL+ G LY
Sbjct: 1173 PVIEASWLGGLPGPGGWHPLTLTLALGAVGLI--GWLY 1208
Score = 87.0 bits (212), Expect = 6e-16
Identities = 57/197 (28%), Positives = 95/197 (47%), Gaps = 5/197 (2%)
Query: 282 IAFLGGLTIIVG-GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISH 340
+A+ G +++G G+ D+ R+ YS+I+++GY+L+GLGIGT+ G A+ H
Sbjct: 7 LAWAGAALMLIGEGLALRNVRDLARMLTYSTIAEIGYVLMGLGIGTAAGETGAVMHLGYQ 66
Query: 341 ALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKW 400
A+ + L + LI R+G ++ G E+MPF M + S+ G+ P G SK+
Sbjct: 67 AIMRALVVVAAWHLIRRSGSSKLDALVGSVERMPFVSLMFGFGLFSVMGLSPFKGSFSKF 126
Query: 401 LIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAP---LPLA- 456
+I A I L + S I Y I V F ++ I K P +P+
Sbjct: 127 VILYAAIENGYWGLAAVGTVASIIAAFYYIHTIQQVCFQRQSHGILGDKPIPFFQIPVGQ 186
Query: 457 IGMAILGTLNVVFGVAP 473
+ + +L + VV + P
Sbjct: 187 LPIVVLALVTVVMSLDP 203
>pir||G75060 hydrogenase-4 component B (EC 1.-.-.-) PAB1392 - Pyrococcus abyssi
(strain Orsay) >gi|5458893|emb|CAB50380.1| (AJ248287)
HYDROGENASE-4 COMPONENT B (EC 1.-.-.-) [Pyrococcus
abyssi]
Length = 647
Score = 219 bits (552), Expect = 8e-56
Identities = 140/472 (29%), Positives = 237/472 (49%), Gaps = 52/472 (11%)
Query: 36 ALIPLIGLI-KLYPSLGQGVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVST 94
A + ++ L+ L P G+ + + + GF L IF +I ++G SA L +
Sbjct: 36 ASLSIVALVFNLKPVEGKLLGLPVYIDGFSL---------IFMLILGILGFSASLYSIPY 86
Query: 95 AK--DGYEWLFALMSLTGALGIFT---AQDLVVFFIFWEIMTFASFMMVLKFNRA--ASL 147
+ G EW++A+ L +F +LV F FWE+MT +SF+++ + +
Sbjct: 87 MERHPGKEWVYAVAYNAFLLSMFLILITSNLVWFVFFWELMTLSSFILITWDEKDFDPGI 146
Query: 148 KYFL-LSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALI 206
KY++ + I+ + + +++G+ Y+ GS + +T+L +
Sbjct: 147 KYYIAMHILTTFPLFISLGVSYSFLGSLDAMTYPNLKSLPSSATLL-------------L 193
Query: 207 YLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLL 266
Y FL+AF K+G+ P H W P Y + +++ +G + K V+G I + MY L
Sbjct: 194 YASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAMEKIAVFGLIRI---MYTAL- 249
Query: 267 IDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGT 326
+ + GY++A LG +T+ VG + A + D ++L AY SI Q+GYI +G+GIG
Sbjct: 250 ------PTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSIGQMGYIWLGIGIGL 303
Query: 327 SL-------GIEAAIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTM 379
SL G+ A I+HA++H+LFKG FL ++ Y TG+T + GGLAE+M +T
Sbjct: 304 SLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLDNLGGLAERMKWTGLA 363
Query: 380 AFIAILSLAGIPPLVGFASKWLIFEAVISQNLPIL---GGMVFFGSAIGFVYLIRFTYAV 436
+A L+++G+PP GF SKWLI+ A + +L + F SA+ I+F Y
Sbjct: 364 TLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFISAVTLASFIKF-YTS 422
Query: 437 WFGQRPSDIEDTKDAPLPLAIGMAILGTLNVVFGVAPGIIAKELNAIFGRTV 488
FG D + PL + + IL +L ++ G+ P ++ +N G +
Sbjct: 423 QFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFPALVVPLINEPIGAPI 474
>pir||F75059 NADH-dehydrogenase related PAB1402 - Pyrococcus abyssi (strain
Orsay) >gi|5458884|emb|CAB50371.1| (AJ248287)
NADH-dehydrogenase related [Pyrococcus abyssi]
Length = 499
Score = 208 bits (523), Expect = 2e-52
Identities = 150/491 (30%), Positives = 243/491 (48%), Gaps = 41/491 (8%)
Query: 12 PLVAGFLAWLFNV-----KGIREGIGVIGALIPLIGLIKLYP---SLGQGVSYTITVGGF 63
PLV F LF+V + I + ++G + LI KL+ S + YT
Sbjct: 11 PLVFAFALPLFSVVVGGNRKIIQAYALLGTGLTLISTFKLFQLTYSSSLPIVYTFGKWRA 70
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAK-----DGYEWLFAL-MSL-TGALGIFT 116
+G + ++ + S+IA V V L + + + G EW + L + L +G LG+
Sbjct: 71 PIGIVYE-VDRLSSLIALVTAVLMFLIAIYSYRYLEREKGLEWYYTLYLGLESGLLGVLL 129
Query: 117 AQDLVVFFIFWEIMTFASFMMVL-----KFNRAASLKYFLLSIMGAYAMLVAIGLIYAKT 171
D F+ E+ + A++ +V+ K + A LKY L+ +G +A+G+ Y
Sbjct: 130 TGDAFNLFVMIEVTSIAAYALVMFYRDRKDSVLAGLKYALIGAVGTTMYFLALGVFYGTF 189
Query: 172 GSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAY 231
G+ +F+D+S + VAL+ L AF +KA +FP H W P+A+
Sbjct: 190 GTVNFADLSEKLHSSGNVVLASS--------VALV--LATWAFLIKATIFPNHFWLPEAH 239
Query: 232 SETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
+AI SG++ GVY I +Y L +G + + I LG ++ I
Sbjct: 240 PAAPSPISAILSGLVVNVGVYAMIRFLYTLYSGLSWIIGWL------SFAIIILGAISSI 293
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
G ++ Q D++RL AYS+I +GY+L+ +G+GT LG++AA++H I+HA+ K L FL V
Sbjct: 294 FGALMMNTQRDVKRLVAYSTIMHMGYLLMAVGVGTQLGLQAALFHLINHAIAKALLFLAV 353
Query: 352 ATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNL 411
I+ G D GL KMP T IA LSL GIPPL F SK L+F A++ ++
Sbjct: 354 GVFIHVAGSRNIDDLAGLGRKMPITTFSLAIATLSLVGIPPLNVFFSKLLLFNALLEKSF 413
Query: 412 PILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLNVVFG- 470
L ++ S I V +R Y +W G+ D+ D K++ + +++ IL + + G
Sbjct: 414 -FLALVIAVTSVIALVAYMRVLYTLWLGKPREDL-DVKES-ISMSMICLILALICIAIGL 470
Query: 471 VAPGIIAKELN 481
+AP ++ K +N
Sbjct: 471 IAPIVLEKLIN 481
>gb|AAF21815.1|AF097740_4 (AF097740) multiple resistance and pH regulation related protein D
[Bacillus firmus]
Length = 493
Score = 206 bits (520), Expect = 4e-52
Identities = 145/491 (29%), Positives = 245/491 (49%), Gaps = 45/491 (9%)
Query: 1 MNELLLAVIFSPLVAGFLAWLF----NVKGIREGIGVIGALIPLIGL-IKLYPSLGQGVS 55
MN L++ I P + G LF +++ + G V+G L+ I L + +Y + G++
Sbjct: 1 MNNLVILPILIPFIVGSFLILFAKHHSLQRVISGFAVVGMLLVSIYLAVDVYQN---GIT 57
Query: 56 YTITVGGFKLGFMMSHLNWIFS----MIAAVVGVSAILGMVSTAKDG----YEWLFALMS 107
+ +G ++ F + + +F+ ++A++VGV + T Y + F
Sbjct: 58 -VLELGNWQAPFGIVLVADLFATMMVILASIVGVVCLFFAFQTISSEREKYYFYPFYFFL 116
Query: 108 LTGALGIFTAQDLVVFFIFWEIMTFASFMMVL----KFNRAASLKYFLLSIMGAYAMLVA 163
L G G F DL F+F+E+M AS+++++ K+ SLKY ++++ + +V
Sbjct: 117 LAGVNGAFLTGDLFNLFVFFEVMLIASYILIVLGGTKYQLRESLKYVVINVFASILFIVG 176
Query: 164 IGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPL 223
+ IY+ TG+ + +D++ G+ + +L +I ++FL+ F +K G+FPL
Sbjct: 177 VAYIYSITGTLNMADLAVKVGELEQTGVLN-----------VIAVIFLVVFAMKGGLFPL 225
Query: 224 HVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGY-VI 282
+ W P +Y + A+F G+L+K G+Y + + L++ P F + +I
Sbjct: 226 YFWLPRSYFGPPAAIAALFGGLLTKVGIYAIMRTFTLIFNH----------DPGFTHTLI 275
Query: 283 AFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHAL 342
L GLT+ G + A Q D +R+ +Y ISQVGY+++GLGI T L I AIY+ H +
Sbjct: 276 LILAGLTMFFGVLGAVSQFDFKRILSYHIISQVGYMVMGLGIYTQLAIAGAIYYIAHHII 335
Query: 343 FKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKW-L 401
K FL TG T+ K GGL + P+ M FI+ +SLAGIPPL GF SK+ L
Sbjct: 336 VKAALFLFAGATQRITGTTDLKKMGGLLKTHPWLAWMFFISAISLAGIPPLSGFFSKFAL 395
Query: 402 IFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAI 461
I A++++N I + G F + F YA W G++ E L + +
Sbjct: 396 ILAAILNENYIIAAVALAVGLLTLFSMMKIFIYAFW-GEQKHTEEQANFKVGKLLLPIVP 454
Query: 462 LGTLNVVFGVA 472
L L ++ G A
Sbjct: 455 LVALTIILGFA 465
>pir||S61395 probable Na+/H+-exchanging protein system component - Bacillus sp.
(strain C-125) >gi|854655|dbj|BAA06609.1| (D31823) ORF1
[Bacillus sp.] >gi|10173935|dbj|BAB05038.1| (AP001511)
Na+/H+ antiporter [Bacillus halodurans]
Length = 804
Score = 197 bits (496), Expect = 3e-49
Identities = 160/550 (29%), Positives = 256/550 (46%), Gaps = 76/550 (13%)
Query: 8 VIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTITVGGFKLGF 67
V+ PLV + ++ I GVI IP + PSLG +++T+ V G L F
Sbjct: 34 VLVLPLV--LFGYFLSLLPITSNGGVIHETIPWV------PSLG--INFTVYVDGLSLLF 83
Query: 68 MMSHLNWIFSMIAAVVGVSAILGMVS-TAKDGYEWLFALMSLTGALGIFTAQDLVVFFIF 126
+ + + I +V + +I + T K +++ LM + LG+ + +L+V ++F
Sbjct: 84 AL-----LITGIGTLVALYSIYYLSKKTEKLNNFYVYLLMFMGAMLGVVLSDNLIVLYVF 138
Query: 127 WEIMTFASFMMVLK-FNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISA 181
WE+ + AS +++ F+R S K L+++ G +AML L+Y TG+FS +I
Sbjct: 139 WELTSLASSLLISYWFHREKSTYGAQKSMLITVFGGFAMLGGFSLLYVITGTFSIREIIE 198
Query: 182 FFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAI 241
ST+ PA LL LL K+ FP H+W PDA +
Sbjct: 199 QADAVLASTLF--LPAM---------LLVLLGAFTKSAQFPFHIWLPDAMEAPTPVSAYL 247
Query: 242 FSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQE 301
S + KAG+Y L + G P + +++A G +T+ G I A Q+
Sbjct: 248 HSATMVKAGLYLVARLTPVFGG-----------TPEWFWLLAGFGIITLCWGSISAVRQK 296
Query: 302 DIRRLFAYSSISQVGYILVGLGIGTSL---------------GIEAAIYHAISHALFKGL 346
D++ + A+S+ISQ+G I+ G+G++ AA++H I+HA FKG
Sbjct: 297 DLKSILAFSTISQLGLIMCLFGLGSATLHFDPTDSMIKFYATATLAAVFHLINHATFKGS 356
Query: 347 FFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAV 406
F+ V + + TG + + GGL MP TFT++ I + ++AG+PP GF SK + F V
Sbjct: 357 LFMTVGIIDHETGTRDIRKLGGLMAIMPVTFTVSLIGLAAMAGLPPFNGFLSKEMFFSGV 416
Query: 407 ISQNLPILGGMVFFG----------SAIGFVYLIRFTYAVWFGQRPSDIED--TKDAPLP 454
++ + M +G S FVY + + G+ + D +AP+
Sbjct: 417 VTATTLGIFNMETWGFLFPVLAWVASVFTFVYCAIMFFRTFTGEFKKENYDVHVHEAPMG 476
Query: 455 LAIGMAILGTLNVVFGVAPG-----IIAKELNAIFGRTVIGGNIWELELGFGRYNALLVT 509
+ I ILG+L V+FG+ P II + AI G V GG + L G L +T
Sbjct: 477 MLISPVILGSLVVIFGLFPNLLTYTIIEPAVTAILGADVFGGGEANIYLWHGFNPELFMT 536
Query: 510 IWLV-IGLLI 518
I +V G LI
Sbjct: 537 IAVVAFGTLI 546
>gb|AAF21812.1|AF097740_1 (AF097740) multiple resistance and pH regulation related protein A
[Bacillus firmus]
Length = 805
Score = 196 bits (493), Expect = 6e-49
Identities = 150/535 (28%), Positives = 258/535 (48%), Gaps = 82/535 (15%)
Query: 32 GVIGALIPLIGLIKLYPSLGQGVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGM 91
GV+ IP + PSLG +++T+ V G L +F+++ +G IL
Sbjct: 56 GVVEHTIPWV------PSLG--INFTVFVDGLSL---------LFALLITGIGTLVILYS 98
Query: 92 VSTAKDGYE-----WLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVLK-FNRAA 145
+ E +++ LM + LG+ + +L+V ++FWE+ + AS +++ F+R
Sbjct: 99 IFYLSKKTESLNNFYVYLLMFMGAMLGVVLSDNLIVLYVFWELTSLASSLLISYWFHREK 158
Query: 146 SL----KYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKL 201
S K L+++ G +AML L+Y TG+FS I E V + S+L
Sbjct: 159 STYGAQKSMLITVFGGFAMLGGFSLLYVMTGTFSIRGII-----ENVDLVTS-----SEL 208
Query: 202 DVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILM 261
+ + L+ L AF K+ FP H+W PDA + S + KAG+Y L +
Sbjct: 209 FLPAMILVLLGAF-TKSAQFPFHIWLPDAMEAPTPVSAYLHSATMVKAGIYLVARLTPVF 267
Query: 262 YGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVG 321
G SA F + F G +T++ G A Q+D++ + A+S++SQ+G I+
Sbjct: 268 AG----------SAEWFWLLTGF-GVVTLLWGSTSAVRQKDLKGILAFSTVSQLGLIMTL 316
Query: 322 LGIGT--------------SLGIEAAIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFG 367
LG+G+ S I AAI+H I+HA FKG F+ + + TG + + G
Sbjct: 317 LGLGSAAIYFGESVDPAFYSFAIMAAIFHLINHATFKGSLFMTACIIDHETGTRDIRKLG 376
Query: 368 GLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVI------SQNLPILGGMV--- 418
GL MP TFT++ I + S+AG+PP GF SK + F A++ + N+ G ++
Sbjct: 377 GLMAIMPVTFTVSLIGLASMAGLPPFNGFLSKEMFFTALLRATEMNAFNMETFGIIIVVL 436
Query: 419 -FFGSAIGFVYLIRFTYAVWFGQRPSDIEDTK--DAPLPLAIGMAILGTLNVVFGVAPGI 475
+ S F+Y + + + G+ + D K +AP+ + I ILG+L +VFG P I
Sbjct: 437 AWIASVFTFLYCLIMFFKTFTGKFKPENYDVKVHEAPIGMLISPVILGSLVIVFGFFPNI 496
Query: 476 IA-----KELNAIFGRTVIGGNIWELELGFGRYNALLVTIWLVIGLLIAGILYFL 525
+A + A+ + G ++ + + ++ +++ +G++ AGI+ FL
Sbjct: 497 LAYTIIEPAMQAVLPTVLADGELFHVNIYM--WHGFNAELFMTMGVVAAGIILFL 549
>dbj|BAB05035.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans]
Length = 493
Score = 195 bits (490), Expect = 1e-48
Identities = 137/488 (28%), Positives = 238/488 (48%), Gaps = 43/488 (8%)
Query: 1 MNELLLAVIFSPLVAG-FLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTIT 59
M+ L++ I P + G FL GI+ + I + L+ L + Q YT+
Sbjct: 1 MSNLVILPILLPFIVGSFLILFAKHHGIQRFLTAITMVGLLLFSFYLATLVYQEGIYTLQ 60
Query: 60 VGGFKLGFMMSHLNWIFS----MIAAVVGVSAILGMVSTAKDG----YEWLFALMSLTGA 111
+G + F + + +F+ +++++VGV+ + T Y + F L + G
Sbjct: 61 LGNWPAPFGIVLVADMFATMMIILSSIVGVACLFFAFQTISSERERYYFYPFYLFLIAGV 120
Query: 112 LGIFTAQDLVVFFIFWEIMTFASFMMVL----KFNRAASLKYFLLSIMGAYAMLVAIGLI 167
G F DL F+F+E+M AS+ +++ K+ S KY ++++ + +V + +
Sbjct: 121 NGAFLTGDLFNLFVFFEVMLIASYALIVLGGTKYQLRESFKYVVINVFASILFIVGVAYL 180
Query: 168 YAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWA 227
Y+ TG+ +F+D++ + +L +I +LFL+ FG+K +FPL+ W
Sbjct: 181 YSVTGTLNFADLAIRVAELEQQGVLN-----------VIAILFLVVFGMKGALFPLYFWL 229
Query: 228 PDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGY-VIAFLG 286
P +Y + A+F G+L+K G+Y I + L++ P+F + +I L
Sbjct: 230 PRSYYGPPAAIAALFGGLLTKVGIYAIIRTFTLIFNH----------DPSFTHTIILALA 279
Query: 287 GLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGL 346
G T+ G + A Q D +R+ +Y ISQVGY+++GLGI T L + AIY+ H + K
Sbjct: 280 GFTMFFGVLGAVSQFDFKRILSYHIISQVGYMVMGLGIFTPLALAGAIYYIAHHIIVKAA 339
Query: 347 FFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAV 406
FL TG TE K GGL + P+ + FI+ +SLAGIPPL GF SK+ + A
Sbjct: 340 LFLFAGATEKITGTTELKKMGGLLKTHPWLAWLFFISAISLAGIPPLSGFFSKFALILAG 399
Query: 407 ISQNLPILGGMVFFGSAIGFVYLIR-FTYAVWFGQRPSDIEDTKDAPLP---LAIGMAIL 462
+ ++ + + +++ F YA W Q+ ++ + A +P L + +A L
Sbjct: 400 FEEGRYVIVTVALIVGLLTLFSMMKIFIYAFWGEQKHTE----QQAKMPIGKLLLPIAPL 455
Query: 463 GTLNVVFG 470
L +V G
Sbjct: 456 VVLTIVLG 463
>pir||B71017 hypothetical protein PH1431 - Pyrococcus horikoshii
>gi|3257855|dbj|BAA30538.1| (AP000006) 510aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 510
Score = 192 bits (484), Expect = 7e-48
Identities = 136/447 (30%), Positives = 216/447 (47%), Gaps = 58/447 (12%)
Query: 75 IFSMIAAVVGVSAILGMVS-----TAKDGYEWLFALMSLTGALGIFTAQDLVVFFIFWEI 129
I +I +V A+L + T + Y L ++ L G LGI D+ F++F EI
Sbjct: 86 IMVLIITLVSFLAVLYSIEYMKHDTGLEKYYTLILILEL-GMLGIAITGDIFNFYVFLEI 144
Query: 130 MTFASFMMVLKFNRA-----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSF-------S 177
M+ AS+ +V N A +KY + + + +L+ I L+Y + G+ + S
Sbjct: 145 MSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSLVLLGIALLYGQYGTLTMGYLAVKMS 204
Query: 178 DISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQS 237
+ K A+S LGG LLF K+G P+H+W DA+ S
Sbjct: 205 ENPTIVAKIALSLFLGG-------------LLF------KSGASPVHMWLADAHPAAPSS 245
Query: 238 YTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILA 297
+A+ SG++ K G I + I+L V G+++ +T+IVG +A
Sbjct: 246 ISAMLSGLVIKVGGIYAIARVVFSIFLPAINLATV------GWLVIIFACITLIVGNAMA 299
Query: 298 ALQEDIRRLFAYSSISQVGYILVGLGIGT--------SLGIEAAIYHAISHALFKGLFFL 349
+QED++RL AYSS+ Q+GYIL+GLGIG L + AIYH ++HA+ K L FL
Sbjct: 300 VVQEDMKRLLAYSSVGQIGYILLGLGIGMVAYGSKIGELALAGAIYHIVNHAMMKALLFL 359
Query: 350 IVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQ 409
+ +++ G + GLA+ MP T I ++ G+PPL GFASKWLI+E+
Sbjct: 360 VAGAVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALF 419
Query: 410 NLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLNVVF 469
N PI+G + G+A +R + +FG+ + KD + I M IL ++
Sbjct: 420 N-PIIGSIAIIGTAFCTAAYVRVLF-TFFGRPNEKVMRAKDPGALMLIPMFILVIAIILM 477
Query: 470 GVAPGIIAKELNAIFGRTVIGGNIWEL 496
G+ P I+ ++ R N+W++
Sbjct: 478 GIFPWQISDKIMIPAAR-----NLWDI 499
>dbj|BAA35098.1| (AB015981) MnhD [Staphylococcus aureus]
Length = 498
Score = 187 bits (470), Expect = 3e-46
Identities = 129/484 (26%), Positives = 231/484 (47%), Gaps = 32/484 (6%)
Query: 2 NELLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTITVG 61
N L+L ++ + A L ++ I+ + + G L+ L+ I ++ + + +G
Sbjct: 5 NMLVLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLVAAIINLANVVKHGPIRVELG 64
Query: 62 GFKLGFMMSHLNWIFSMIAAVVGV--SAILGMVSTAKDG------YEWLFALMSLTGALG 113
+K + + + IFS + + + +AI+ + S G Y + L L G +G
Sbjct: 65 SWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTIGIERERYYYYFSVLFMLIGIIG 124
Query: 114 IFTAQDLVVFFIFWEIMTFASFMMVL----KFNRAASLKYFLLSIMGAYAMLVAIGLIYA 169
FT D+ F+F+E+ +S+ +++ K ++KY L++++ + ++ + ++Y+
Sbjct: 125 AFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMGVAILYS 184
Query: 170 KTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPD 229
G+ + +DIS L A V ++++LF+ F KAG+FP+ VW P
Sbjct: 185 VVGTLNLADIS---------NKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPS 235
Query: 230 AYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLT 289
AY A F +L+K GVY L + + YVI FL LT
Sbjct: 236 AYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSD---------NVSFSHYVILFLALLT 286
Query: 290 IIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFL 349
II G + A +I+++ Y+ + VG ILVG+ + T G+ AIY+ + L K FL
Sbjct: 287 IIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFL 346
Query: 350 IVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQ 409
++ +I TG + + FGGL ++ P FIA LSLAGIPPL GF K+ I ++ +
Sbjct: 347 LIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFER 406
Query: 410 NLPILGGMVFFGSAIGFVYLIRFTYAVWFGQ-RPSDIEDTKDAPLPLAIGMAILGTLNVV 468
+ G +V S + +IR +FGQ + D+ + D I + + + V+
Sbjct: 407 GFYLSGVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVKYLTTIAIVAV-VITVL 465
Query: 469 FGVA 472
+G++
Sbjct: 466 YGLS 469
>pir||H82494 probable NADH dehydrogenase VCA0155 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657544|gb|AAF96068.1|
(AE004356) NADH dehydrogenase, putative [Vibrio
cholerae]
Length = 498
Score = 186 bits (467), Expect = 7e-46
Identities = 140/488 (28%), Positives = 238/488 (48%), Gaps = 44/488 (9%)
Query: 4 LLLAVIFSPL--VAGFLA----WLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYT 57
L L V+ S L VA FLA WL N G+ VI + I +Y +++
Sbjct: 6 LTLPVVISLLTAVAIFLAGRNRWLTN--GLSVICSVINLFTGALLTITIYTHGPASIAFG 63
Query: 58 ITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVS--TAKDGYEWLFALMS--LTGALG 113
F + F+ L+ M+ A++G+ +++ ++ +AK Y AL+ L G G
Sbjct: 64 QWPAPFGIVFVADLLSVGMVMVTAIIGLVSVIYAIADLSAKPSYARYHALLHVLLAGVYG 123
Query: 114 IFTAQDLVVFFIFWEIMTFASF-MMVLKFNRA---ASLKYFLLSIMGAYAMLVAIGLIYA 169
F D+ ++++E+M ASF +MVL N+ ++KY LL+++ L++IGL+Y
Sbjct: 124 AFLTGDIFNLYVWFEVMLIASFGLMVLDANQQQIDGAIKYVLLNLISTLVFLLSIGLLYG 183
Query: 170 KTGSFSFSDI--SAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWA 227
TG+ + +D+ A + TML G L L AF +KA +FPL W
Sbjct: 184 ATGTLNLADLHDKAQSLAPEMKTMLAG--------------LLLFAFSIKAALFPLFAWL 229
Query: 228 PDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGG 287
P +Y + A+F+ +L+K GVY + ++ L++ + V+ +
Sbjct: 230 PASYHTLPSAIVALFAALLTKVGVYALLRVFTLVFPL---------DGSGWQPVLLGIAA 280
Query: 288 LTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLF 347
LT++ G + AA Q DI+++ ++ ISQ+GY+++GL I T L I AI++ I H L KG
Sbjct: 281 LTMLTGVLGAASQYDIKKILSFHIISQIGYMIMGLAIYTPLAITGAIFYVIHHILVKGNL 340
Query: 348 FLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVI 407
FLI + + G T+ GG+ MP+ +A SLAG PPL GF K+L+ +A +
Sbjct: 341 FLIGGLIGRKYGTTQLTQLGGVYRAMPWLTFGFLLAAFSLAGFPPLSGFWGKFLVIKASL 400
Query: 408 SQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPL---AIGMAILGT 464
+ L L + + + + V++ P+ ++ A L A+ + +L
Sbjct: 401 AAELYWLAAIALLVGLLTIFSMTKIWNEVFWKDAPAALQQETLARSTLGLYALPILVLTL 460
Query: 465 LNVVFGVA 472
++V G+A
Sbjct: 461 FSLVIGLA 468
>pir||F75115 co-induced hydrogenase related, chain M PAB1888 - Pyrococcus abyssi
(strain Orsay) >gi|5458150|emb|CAB49639.1| (AJ248285)
CO-induced hydrogenase related, subunit M [Pyrococcus
abyssi]
Length = 510
Score = 183 bits (459), Expect = 6e-45
Identities = 121/401 (30%), Positives = 197/401 (48%), Gaps = 50/401 (12%)
Query: 94 TAKDGYEWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA-----ASLK 148
T + Y L ++ L G LGI D+ F++F EIM+ AS+ +V + A +K
Sbjct: 110 TGLEKYYTLILILEL-GMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIK 168
Query: 149 YFLLSIMGAYAMLVAIGLIYAKTGSFSF-------SDISAFFGKEAVSTMLGGTPAFSKL 201
Y + + + +L+ I L+Y + G+ + S+ K A++ LGG
Sbjct: 169 YMFVGSLASSFVLLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGG------- 221
Query: 202 DVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSK-AGVYGFILLYIL 260
LLF K+G P+H+W DA+ S +A+ SG++ K G+Y +
Sbjct: 222 ------LLF------KSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFS 269
Query: 261 MYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILV 320
++ + + G++I +T+IVG +A +QED++RL AYSS+ Q+GYIL+
Sbjct: 270 IFWPAI-------NPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILL 322
Query: 321 GLGIGT--------SLGIEAAIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEK 372
GLGIG + + AIYH ++HAL K L FL+ +++ G + GLA+
Sbjct: 323 GLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGTRNLNELSGLAKT 382
Query: 373 MPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRF 432
MP T I ++ G+PPL GFASKWLI+E+ N P+LG + G+A +R
Sbjct: 383 MPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFN-PLLGAIAIIGTAFCTAAYVRV 441
Query: 433 TYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLNVVFGVAP 473
+ +FG+ + KD + + + IL + G+ P
Sbjct: 442 LF-TFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLFP 481
>pir||G71019 hypothetical protein PH1452 - Pyrococcus horikoshii
>gi|3257876|dbj|BAA30559.1| (AP000006) 495aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 495
Score = 181 bits (454), Expect = 2e-44
Identities = 134/487 (27%), Positives = 226/487 (45%), Gaps = 52/487 (10%)
Query: 1 MNELLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKL----------YPSL 50
M+++ +I PL++ F + +K I++ + + P + LI L Y
Sbjct: 1 MSQVASLLIALPLISAFFVPV--LKQIKKSL-----IFPYLTLITLLQTGIAGWVFYEVY 53
Query: 51 GQGVSYTITVGGFK----LGFMMSHLNWIFSMIAAVVGVSAILGMVSTAK----DGYEWL 102
G I GG++ + + +F +I A+V L + K D Y L
Sbjct: 54 TTGKPILIYAGGWRPPVGINLYIGPFAALFILIIAIVSFLTSLFSMRMVKVEPIDKYAML 113
Query: 103 FALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA-----ASLKYFLLSIMGA 157
F L+ L GA G+ D+ F+F EI ++ + +N+ AS+KY +L +G+
Sbjct: 114 FLLLML-GATGMIATGDIFNLFVFMEITAITAYALTA-YNKTGEAAEASMKYMILGGIGS 171
Query: 158 YAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVK 217
L+ + LIY TG+ + + ++ F + ++ V L ++F LA V+
Sbjct: 172 SFFLIGVALIYGVTGTLNMAQLAEFASAGKIMPVVA--------QVGLSLIIFGLA--VE 221
Query: 218 AGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFI-LLYILMYGKLLIDLGQVRSAP 276
A +FPL+ WAPDAY T +FS + KAG+Y +LY+L +V
Sbjct: 222 AELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQ---------KVNGWD 272
Query: 277 AFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYH 336
+ ++ + LT+I + A Q+D++R+ AYSSI QVG I + +GT G++A ++H
Sbjct: 273 SVLKLLLIMATLTVIFAELSALRQKDVKRMIAYSSIGQVGLIALAFSLGTQAGVDAGVFH 332
Query: 337 AISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGF 396
++HA+ K + FL V + G T +DF GL ++MP T + +S G+P F
Sbjct: 333 MLNHAIVKTMMFLGVGYVGVMVGGTRIEDFRGLGKRMPLTALSLSVGAISTVGVPLFNVF 392
Query: 397 ASKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLA 456
SK+ I A I +V F S + VY R + +WF I++ L
Sbjct: 393 WSKFRIIVATIQAGFVWPAVLVLFASVVEAVYYFRLLHVMWFAGEGERIKEGWIVVFLLL 452
Query: 457 IGMAILG 463
+ + I+G
Sbjct: 453 LALIIVG 459
>emb|CAB07908.1| (Z93932) unknown [Bacillus subtilis]
Length = 480
Score = 180 bits (451), Expect = 5e-44
Identities = 122/485 (25%), Positives = 228/485 (46%), Gaps = 35/485 (7%)
Query: 1 MNELLLAVIFSPLVAGFLAWLF--NVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTI 58
MN ++ I P+++ L N+ +R A+ +I I + +G+ T+
Sbjct: 1 MNNFVILAILIPILSAILLIFMTKNLMLMRIFSTAASAIGIVISGILVQTVFTKGIQ-TL 59
Query: 59 TVGGFKLGF--------MMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTG 110
++GG+K + S L ++I +VG+ + + + + + L G
Sbjct: 60 SLGGWKAPYGIVLAADQFASLLVLTTAIIGLLVGLYSFRSVGEKRERSFYYSGVQFLLAG 119
Query: 111 ALGIFTAQDLVVFFIFWEIMTFASFMMVL----KFNRAASLKYFLLSIMGAYAMLVAIGL 166
G F DL ++F+E++ AS+M+++ K SLKY + +I+ + ++ +G
Sbjct: 120 VSGAFLTGDLFNMYVFFELLLIASYMLIVLGGTKIQLRESLKYIVFNIVSSALFVIGVGF 179
Query: 167 IYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVW 226
+YA TG+ + +D+S + + + + +I +L LL FG+K G+FPL+ W
Sbjct: 180 LYAVTGTLNMADLSVKISESGQTGL-----------ITVIGVLLLLVFGMKGGIFPLYFW 228
Query: 227 APDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLG 286
P +Y + +A+F +L+K G+Y ++ L++ + ++ +L
Sbjct: 229 LPGSYYAPPAAISALFGALLTKVGLYAITRVFTLIF---------IHDTAFTHQLMIWLA 279
Query: 287 GLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGL 346
LT+I G I + ++ ++ Y+ I+ VG IL G+ + T I+ AIY+ I L KG
Sbjct: 280 ALTVIFGVIGSLAYSNVMKIVIYNIITAVGVILFGVAVHTPASIQGAIYYLIHDMLIKGA 339
Query: 347 FFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAV 406
F++ TLI TG GGL ++ P M FI+ +SLAGIPPL GF K+ I E
Sbjct: 340 LFMLAGTLIALTGTASLHKMGGLIKRYPVLGWMFFISAISLAGIPPLSGFVGKFKIAEGG 399
Query: 407 ISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLN 466
++ + ++ S + ++R ++G+ + L AI L+
Sbjct: 400 FAEGEFTISMLILLSSLLVLYSVLRIFIHAFWGEEKETPKPNHRTAKGLLYPAAIFLLLS 459
Query: 467 VVFGV 471
++FG+
Sbjct: 460 LLFGL 464
>pir||G70008 NADH dehydrogenase (ubiquinone) homolog yufD - Bacillus subtilis
>gi|2635659|emb|CAB15152.1| (Z99120) similar to NADH
dehydrogenase (ubiquinone) [Bacillus subtilis]
Length = 480
Score = 178 bits (448), Expect = 1e-43
Identities = 122/485 (25%), Positives = 228/485 (46%), Gaps = 35/485 (7%)
Query: 1 MNELLLAVIFSPLVAGFLAWLF--NVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTI 58
MN ++ I P+++ L N+ +R A+ +I I + +G+ T+
Sbjct: 1 MNNFVILAILIPILSAILLIFMTKNLMLMRIFSTAASAIGIVISGILVQTVFTKGIQ-TL 59
Query: 59 TVGGFKLGF--------MMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTG 110
++GG+K + S L ++I +VG+ + + + + + L G
Sbjct: 60 SLGGWKAPYGIVLAADQFASLLVLTTAIIGLLVGLYSFRSVGEKRERSFYYSGVQFLLAG 119
Query: 111 ALGIFTAQDLVVFFIFWEIMTFASFMMVL----KFNRAASLKYFLLSIMGAYAMLVAIGL 166
G F DL ++F+E++ AS+M+++ K SLKY + +I+ + ++ +G
Sbjct: 120 VSGAFLTGDLFNMYVFFELLLIASYMLIVLGGTKIQLRESLKYIVFNIVSSALFVIGVGF 179
Query: 167 IYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVW 226
+YA TG+ + +D+S + + + + +I +L LL FG+K G+FPL+ W
Sbjct: 180 LYAVTGTLNMADLSVKISESGQTGL-----------ITVIGVLLLLVFGMKGGIFPLYFW 228
Query: 227 APDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLG 286
P +Y + +A+F +L+K G+Y ++ L++ + ++ +L
Sbjct: 229 LPGSYYAPPAAISALFGALLTKVGLYAITRVFTLIF---------IHDTAFTHQLMIWLA 279
Query: 287 GLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGL 346
LT+I G I + ++ ++ Y+ I+ VG IL G+ + T I+ AIY+ I L KG
Sbjct: 280 ALTVIFGVIGSLAYSNVMKIVIYNIITAVGVILFGVAVHTPASIQGAIYYLIHDMLVKGA 339
Query: 347 FFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAV 406
F++ TLI TG GGL ++ P M FI+ +SLAGIPPL GF K+ I E
Sbjct: 340 LFMLAGTLIALTGTASLHKMGGLIKRYPVLGWMFFISAISLAGIPPLSGFVGKFKIAEGG 399
Query: 407 ISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLN 466
++ + ++ S + ++R ++G+ + L AI L+
Sbjct: 400 FAEGEFTISMLILLSSLLVLYSVLRIFIHAFWGEEKETPKPNHRTAKGLLYPAAISLLLS 459
Query: 467 VVFGV 471
++FG+
Sbjct: 460 LLFGL 464
>sp|Q9ZCG0|NUOM_RICPR NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
M) >gi|7432362|pir||C71640 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain M RP793 - Rickettsia
prowazekii >gi|3861320|emb|CAA15219.1| (AJ235273) NADH
DEHYDROGENASE I CHAIN M (nuoM) [Rickettsia prowazekii]
Length = 491
Score = 178 bits (447), Expect = 2e-43
Identities = 115/408 (28%), Positives = 210/408 (51%), Gaps = 29/408 (7%)
Query: 76 FSMIAAVVGVSAILGMVSTAKDGY-EWLFALMSLTG-ALGIFTAQDLVVFFIFWEIMTFA 133
F ++ + + + I+G + T K E+L + + +G FT+ +L++F++F+E +
Sbjct: 91 FVVLTSFLTLICIIGSLFTIKKYIKEYLVCFLLMESLCIGAFTSINLLLFYLFFEAILVP 150
Query: 134 SFMMVLKF---NRA-ASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVS 189
++++ + NR A+LK+FL + G+ L+A+ IY+K SF ++I
Sbjct: 151 MYIIIGVWGGDNRIYAALKFFLYTFFGSVFFLLALIYIYSKIHSFDLTNILE-------- 202
Query: 190 TMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKA 249
++G P F++ +++ +AF +K M P H W PDA+ + + + I +G+L K
Sbjct: 203 -LIGNIPLFAQ---KILWWAIFIAFAIKTPMIPFHTWLPDAHVQAPTTGSVILAGILLKL 258
Query: 250 GVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAY 309
G YGF+ + + ++ ++ F + +L + II ++A Q+DI+++ AY
Sbjct: 259 GGYGFLRVLLPLFPN---------ASQEFAIYVIYLSVIAIIYASLVALAQKDIKQMIAY 309
Query: 310 SSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGL 369
SSI+ +GY+ +G+ T +GI AI+ +SH + FLIV TL R E +GG+
Sbjct: 310 SSIAHMGYVTIGIFSFTEIGISGAIFQMLSHGIISSSLFLIVGTLYERLHTKEIAKYGGV 369
Query: 370 AEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYL 429
A KMP T IA+LS G+P GF ++L + N+ + + G +G VY+
Sbjct: 370 ANKMPILATFFMIAMLSSIGLPSTSGFIGEFLSLLGIYKVNV-VTAFIAALGIILGAVYM 428
Query: 430 IRFTYAVWFGQ-RPSDIEDTKDAPLPLAIGMAILGTLNVVFGVAPGII 476
++ V G+ ++I+ +D I +A L L + FG+ P I
Sbjct: 429 LKLYKEVMLGEITNTEIKHFRDLYKYEIISIAPLILLIIYFGLMPNSI 476
>pir||F75113 NADH dehydrogenase I N chain PAB2416 - Pyrococcus abyssi (strain
Orsay) >gi|5458134|emb|CAB49623.1| (AJ248285) NADH
DEHYDROGENASE I N SUBUNIT [Pyrococcus abyssi]
Length = 493
Score = 178 bits (446), Expect = 2e-43
Identities = 134/494 (27%), Positives = 231/494 (46%), Gaps = 53/494 (10%)
Query: 1 MNELLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIK-------LYPSLGQG 53
M+++ +I PL++ F + +K I++ + I + LI LI+ Y G
Sbjct: 1 MSQVASLLIALPLISAFFVPV--LKRIKQSL--IMPYLILITLIQTGIAGWVFYEVYTTG 56
Query: 54 VSYTITVGGFK----LGFMMSHLNWIFSMIAAVVGVSAILGMVSTAK----DGYEWLFAL 105
I GG++ + + +F +I AVV + V K D Y LF L
Sbjct: 57 KPIIIMAGGWRPPVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEPIDKYAMLFLL 116
Query: 106 MSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA-----ASLKYFLLSIMGAYAM 160
+ L GA G+ D+ F+F EI ++ + +N+ AS+KY +L +G+
Sbjct: 117 LML-GATGMIATGDIFNLFVFMEITAITAYALTA-YNKTGEAAEASMKYIVLGGIGSSFF 174
Query: 161 LVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGM 220
L+ + L+Y TG+ + + ++ +ST + P +++ +AL+ + V+A +
Sbjct: 175 LIGVALLYGATGTLNMAHLAE------LSTSIN--PIVAQVGLALV----IFGLAVEAEL 222
Query: 221 FPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFI-LLYILMYGKLLIDLGQVRSAPAFG 279
FPL+ WAPDAY T +FS + KAG+Y +LY+L + +
Sbjct: 223 FPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLLQ---------KANGWSSVL 273
Query: 280 YVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAIS 339
++ + LT+I + A Q D++R+ AYSSI Q+G I + +GT G++A ++H ++
Sbjct: 274 RLVLIMATLTVIFAELSALRQRDVKRMIAYSSIGQIGLIALAFSLGTQAGVDAGVFHMLN 333
Query: 340 HALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
HA+ K + FL V + G TE + F GL ++MP T I +S G+P F SK
Sbjct: 334 HAIVKAMMFLGVGYVGITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSK 393
Query: 400 WLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGM 459
+ I A + +V F S + VY R + +WF +++ + I +
Sbjct: 394 FRIIVATLQAGFIWPAILVLFASMVEAVYYFRLVHTMWFSGSGERVKEGW-----IVIFL 448
Query: 460 AILGTLNVVFGVAP 473
+L L V G+ P
Sbjct: 449 LLLAVLVVAIGIYP 462
>dbj|BAA35095.1| (AB015981) MnhA [Staphylococcus aureus]
Length = 801
Score = 176 bits (441), Expect = 8e-43
Identities = 133/502 (26%), Positives = 241/502 (47%), Gaps = 75/502 (14%)
Query: 62 GFKLGFMMSHLNWIFSMIAAVVGVSAIL---GMVSTAKD-GYEWLFALMSLTGALGIFTA 117
G + L +FS++ + +G +L G +S ++ G + + L+ + LG+ +
Sbjct: 69 GMNFDLYLDGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYLLLFMGAMLGVVLS 128
Query: 118 QDLVVFFIFWEIMTFASFMMVLKFN-RAASL----KYFLLSIMGAYAMLVAIGLIYAKTG 172
++++ ++FWE+ +F+SF+++ + R AS+ K ++++ G ++L I L+ T
Sbjct: 129 DNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGLSLLGGIILLAIPTQ 188
Query: 173 SFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGV--KAGMFPLHVWAPDA 230
SFS + ++ + +P F I+ + L+ G K+ FP ++W PDA
Sbjct: 189 SFSIQYMIQH------ASEIQNSPFF-------IFAMILIMIGAFTKSAQFPFYIWLPDA 235
Query: 231 YSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAP-AFGYVIAFLGGLT 289
+ S + KAG+Y L+ + + +A + + + +G +T
Sbjct: 236 MEAPTPVSAYLHSATMVKAGLY------------LIARMTPIFAASQGWVWTVTLVGLIT 283
Query: 290 IIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGT-------------SLGIEAAIYH 336
+ + A Q+D++ + A+S++SQ+G I+ LGIG + AAI+H
Sbjct: 284 LFWASLNATKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFH 343
Query: 337 AISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGF 396
I+HA FKG F+I + + TG + K GGL MP +FT+ I LS+AG+PP GF
Sbjct: 344 LINHATFKGALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGF 403
Query: 397 ASKWLIFEAVISQN-------------LPILGGMVFFGSAIGFVYLIRFTYAVWFGQ-RP 442
SK E + + PI+G GS FVY I+F ++FGQ +P
Sbjct: 404 LSKESFLETTFTASQANLFSVDTLGYLFPIIG---IVGSVFTFVYSIKFIMHIFFGQYKP 460
Query: 443 SDI-EDTKDAPLPLAIGMAILGTLNVVFGVAPGIIAKEL----NAIFGRTVIGGNIWELE 497
+ + + + + + AIL TL +VFG+ PGI+ + + TVI + E
Sbjct: 461 EQLPKKAHEVSILMLLSPAILATLVIVFGLFPGILTNSIIEPATSSINHTVI--DDVEFH 518
Query: 498 LGFGRYNALLVTIWL-VIGLLI 518
+ G A L T+ + ++G+L+
Sbjct: 519 MFHGLTPAFLSTLVIYILGILL 540
>pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946968|gb|AAG04443.1|AE004537_8 (AE004537) probable
NADH dehydrogenase [Pseudomonas aeruginosa]
Length = 933
Score = 175 bits (439), Expect = 1e-42
Identities = 154/636 (24%), Positives = 285/636 (44%), Gaps = 79/636 (12%)
Query: 4 LLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVS-YTITVG- 61
++LA+I + G L L +G R + PLIGLI L G + T+T
Sbjct: 1 MILALIIALPFMGALLPLLAERGGRTLCAASAGVAPLIGLILLLGQRGTVFAGQTLTASY 60
Query: 62 ------GFKLGFMMSHLNWIFSMIAAVVGVSAILG----MVSTAKDGYEWLFALMSLTGA 111
G L + L ++F+++ +G+ IL + G + F L+ +
Sbjct: 61 SWLPEIGINLSLRLDGLGFLFALLILGIGLLVILYARYYLSEQEPMGRFFAFLLLFMGSM 120
Query: 112 LGIFTAQDLVVFFIFWEIMTFASFMMVLKF-NRAASLKYFLLSIM----GAYAMLVAIGL 166
LG+ A++L++ +FWE+ + +SF+++ + +R+ + K +++ G A+L + L
Sbjct: 121 LGVVLAENLLLMMLFWELTSLSSFLLIGFWGSRSDARKGARMALTVTGGGGLALLAGVLL 180
Query: 167 IYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVW 226
+ GSF +++ A G + L+ +L LL K+ FP H W
Sbjct: 181 LGHIAGSFELTEVLA-----------AGELIRAHALYPLVLILILLGVFTKSAQFPFHFW 229
Query: 227 APDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLG 286
P A + + S + KAGV+ LY + G F Y+++ G
Sbjct: 230 LPHAMAAPTPVSAYLHSATMVKAGVFLLARLYPALAG-----------TEWFFYLVSLSG 278
Query: 287 GLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGL 346
+T+++G +A Q D++ L AYS+IS +G I + G+ + L AA++H I+HA FK
Sbjct: 279 LVTLLLGAGMALFQHDLKGLLAYSTISHLGLITLLFGLDSPLSNVAAVFHIINHATFKAS 338
Query: 347 FFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAV 406
F+ + + TG + + G+ + +P T +A +A L++AG+P L GF SK + F
Sbjct: 339 LFMAAGIIDHETGSRDMRLINGMWKYLPHTAVLAIVASLAMAGVPLLNGFLSKEMFFGET 398
Query: 407 ISQNLP-----ILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIE--DTKDAPLPLAIGM 459
+SQNL ++ + Y +RF + V+F P+ + + P + + +
Sbjct: 399 LSQNLLGSFNWLVPAVATLAGVFSVAYSLRFIHDVFFNGEPARLPKFPPHEPPRYMKVPV 458
Query: 460 AILGTLNVVFGVAPGIIAKELNAIFGRTVIGGNIWELELGFGRYNALLVTIWLVIGLLIA 519
IL L ++ G+ P L A +GG + E L ++ + + + + L+
Sbjct: 459 EILVFLCLLVGMLPAYTVAPLLAAAASASLGGQLPEYSLAI--WHGFNLPLLMSVVALVG 516
Query: 520 GILYFLGASTRKVPVTDTYQSGNPVTMDYNLTIRRNFFLPLKEAVAFWLRISFDKLYRDV 579
G+L ++ + P+ + Y +G P +D L + ++ VA R++
Sbjct: 517 GVLVYV----LRKPLFNWY-AGLP-EVDAKLVFEQQ----VQRVVALAARLT-------- 558
Query: 580 WKSIEDFAETARNYIYNGNVQAY-AWYLAIILLILA 614
++ NG++Q Y AW L L+++A
Sbjct: 559 ------------AWLENGSLQRYLAWLLGAALVVVA 582
>gb|AAG19078.1| (AE005006) Vng0560c [Halobacterium sp. NRC-1]
Length = 594
Score = 173 bits (434), Expect = 5e-42
Identities = 127/479 (26%), Positives = 211/479 (43%), Gaps = 53/479 (11%)
Query: 10 FSPLVAGFLAWLFNVKGIREGIGVIG--ALIPLIGLIKLYPSLGQGVSYTITVGGFKLGF 67
F P++ L F + +G + A++P + L+ G + + GF
Sbjct: 9 FVPVLVAALLVPFLSRRTGHALGAVASAAVVPYVWLV------ATGAHLPVKLFGFHAIL 62
Query: 68 M-MSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTGALGIFTAQDLVVFFIF 126
+ + + + +I ++G + ++ ++ + + FAL + +LG A D + F
Sbjct: 63 LNVDPFSTLMGLIFGLIGAAGVVYSYASDAENIQTAFALGYVGTSLGAVFAGDWLTLIFF 122
Query: 127 WEIMTFASFMMVLKFNRAA---SLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFF 183
WE+M S ++V + A +Y L +G +L AI +A+TG+F F +
Sbjct: 123 WELMAATSTLLVWHYGGKAVRAGFRYALAHGIGGTLLLAAIIWQFAETGTFLFGSVP--- 179
Query: 184 GKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFS 243
G P + L ++ +L L GV G LH W PD Y + +
Sbjct: 180 ----------GGPETAGLAGSIAPVLAALGIGVNVGFVGLHAWLPDTYPRPHIAASVFLC 229
Query: 244 GVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYV-IAFLGGLTIIVGGILAALQED 302
+K GVYG ++ P G + +A++GG + G ++A Q D
Sbjct: 230 VFTTKTGVYGLYRVF-----------------PEHGNMAVAYMGGAMAVFGAMMALFQND 272
Query: 303 IRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYRTGKTE 362
+RRL +Y SQVGY++ G+GIG++L A H +H L+KGL F+ ++YRTG+
Sbjct: 273 MRRLLSYHIQSQVGYMVAGVGIGSALAQAGAFAHVFNHILYKGLLFMTAGVIVYRTGEER 332
Query: 363 FKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPI--------L 414
GGLA +MP T +A LS++G P GF SK +I A + P+ L
Sbjct: 333 LPKLGGLAREMPITAGAFTVAALSISGFPGFNGFVSKGIIISASHYMHAPLVTVGEFTGL 392
Query: 415 GGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLNVVFGVAP 473
++ G F+ I+F Y +F S KDA A M + L + +G+ P
Sbjct: 393 QVLLLLGGVGTFMSFIKFGYYAFF--HGSYDGTVKDANRGQAAAMVAIAALCLGYGLYP 449
>pir||F75464 probable NADH-ubiquinone/plastoquinone subunit - Deinococcus
radiodurans (strain R1)
>gi|6458595|gb|AAF10453.1|AE001941_6 (AE001941)
NADH-ubiquinone/plastoquinone subunit, putative
[Deinococcus radiodurans]
Length = 814
Score = 166 bits (417), Expect = 5e-40
Identities = 155/557 (27%), Positives = 242/557 (42%), Gaps = 52/557 (9%)
Query: 4 LLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQG-----VSYTI 58
+ LAV+F L+A A L G R G +P + LI +L V+ +
Sbjct: 1 MTLAVLFPFLMAAVCALLGPQLGRRTGYFAAAGFLPALALIPRLFALPAAAPVSEVTRWV 60
Query: 59 TVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYE----WLFALMSLTGALGI 114
G L F + +F+ + V+G A L V+ G + + + L LG+
Sbjct: 61 PELGLNLVFRGDGFSLLFAALIGVIGTLATLYSVAYLSAGEKFGRFYPYLLCFGGSMLGL 120
Query: 115 FTAQDLVVFFIFWEIMTFASFMMVLKFN-----RAASLKYFLLSIMGAYAMLVAIGLIYA 169
+ +LV F FWE+ + SF+++ ++ R ++K FL+S +G +L A ++
Sbjct: 121 VLSDNLVALFGFWEMTSVTSFLLIGLWHTRSAARDGAVKAFLISALGGLGLLAAAAMLSI 180
Query: 170 KTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPD 229
GS + S + LG A S L V + L AF K+ P H+W P
Sbjct: 181 AGGSPNLSQLD-----------LGAVRA-SPLFVPALLCTLLAAF-TKSAQLPFHIWLPT 227
Query: 230 AYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLT 289
A + S + KAGV + + L++G + G + LG LT
Sbjct: 228 AMEAPTPISAFLHSATMVKAGVV-LVAKFGLIFGTSALWSG----------ITVPLGLLT 276
Query: 290 IIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFL 349
++ G LA Q D++ L AYS++SQ+G ++ G+ + G AA H ++HA FK F
Sbjct: 277 MVWGSWLALRQTDLKALLAYSTVSQLGLLMSLYGLADAGGRFAATAHLLNHAAFKAALFF 336
Query: 350 IVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQ 409
+V + + TG + L +MP TF +A +A LS+AG+PPL GF SK L +E ++
Sbjct: 337 VVGIIDHETGTRQIPYLQNLRRQMPVTFVIALLAALSMAGLPPLGGFVSKELFYENMLRA 396
Query: 410 NLPILGGMVFFGSAIGFVY---LIRFTYAVWFGQRPSDIEDTKD--------APLPLAIG 458
P + GSA+ Y L+ +A G P+ E +D APL L +
Sbjct: 397 G-PGFIAVAVLGSALTLAYSARLLSIFFAPRSGLTPTRRELRQDALKAHVHEAPLGLTLP 455
Query: 459 MAILGTLNVVFGVAPGIIAKELNAIFGRTVIGGNIWELELGFGRYNALLVT--IWLVIGL 516
+L ++FG+ P G L L G ALL+T WL+ GL
Sbjct: 456 AGLLAGTALLFGLWPHTAEVLTRTAEAALNFGAVREHLALWHGVTPALLLTGLTWLLGGL 515
Query: 517 LIAGILYFLGASTRKVP 533
L+ F +R P
Sbjct: 516 LVWQARPFAEVQSRLTP 532
>pir||A70010 NADH dehydrogenase homolog yufT - Bacillus subtilis
>gi|1934817|emb|CAB07942.1| (Z93937) unknown [Bacillus
subtilis] >gi|2635656|emb|CAB15149.1| (Z99120) similar
to NADH dehydrogenase [Bacillus subtilis]
Length = 774
Score = 165 bits (414), Expect = 1e-39
Identities = 129/532 (24%), Positives = 250/532 (46%), Gaps = 77/532 (14%)
Query: 40 LIGLIKLYPSLGQGVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKD-G 98
L +++ PSLG +++T+ + G L F + + + I ++V + +I + + G
Sbjct: 31 LRSVLEWIPSLG--INFTVYIDGLGLLFAL-----LITGIGSLVTLYSIFYLSKEKEQLG 83
Query: 99 YEWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMV-----LKFNRAASLKYFLLS 153
+++ LM + LG+ +++V ++FWE+ + +SF+++ + +R + K L++
Sbjct: 84 PFYVYLLMFMGAMLGVVLVDNVMVLYMFWELTSLSSFLLIGYWYKREKSRYGAAKSLLIT 143
Query: 154 IMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLA 213
+ G ML L+Y T SFS ++ V + G +L + + L+ L A
Sbjct: 144 VSGGLCMLGGFILLYLITDSFSIREMV-----HQVQLIAG-----HELFIPAMILILLGA 193
Query: 214 FGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVR 273
F K+ FP ++W PDA + S + KAG+Y R
Sbjct: 194 F-TKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGIYVI-----------------AR 235
Query: 274 SAPAFGY------VIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTS 327
+P F + +++ +G T++ G A Q D++ + A+S++SQ+G I+ LG+ +
Sbjct: 236 FSPIFAFSAQWFWIVSLVGLFTMVWGSFHAVKQTDLKSILAFSTVSQLGMIISMLGVSAA 295
Query: 328 -----------LGIEAAIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFT 376
+ AAI+H I+HA FKG F+ V + + TG + + GGL MP T
Sbjct: 296 ALHYGHTEYYTVAAMAAIFHLINHATFKGSLFMAVGIIDHETGTRDIRKLGGLMAIMPIT 355
Query: 377 FTMAFIAILSLAGIPPLVGFASKWLIFEAVISQ------NLPILGGM----VFFGSAIGF 426
FT++ I S+AG+PP GF SK + F +++ N+ G + + GS F
Sbjct: 356 FTISLIGTFSMAGLPPFNGFLSKEMFFTSMLRVTHFDLFNVQTWGVLFPLFAWIGSVFTF 415
Query: 427 VYLIRFTYAVWFGQ-RPSDIE-DTKDAPLPLAIGMAILGTLNVVFGVAPGIIAKEL---- 480
+Y ++ + + G +P +E +AP+ + + IL L V P I++ L
Sbjct: 416 IYSMKLLFKTFRGNYQPEQLEKQAHEAPVGMLVPPVILVALAVSLFFFPNILSYSLIEPA 475
Query: 481 -NAIFGRTVIGGNIWELELGFGRYNALLVTIWLVIGLLIAGILYFLGASTRK 531
N+I+ + G + + + +++ + + + G+++ G + +L + K
Sbjct: 476 MNSIYPTLLDGHEKFHVHI--SQWHGVTTELLMTAGIVVIGTIGYLSLNKWK 525
>gb|AAF65740.1|AF228525_10 (AF228525) F420H2 dehydrogenase subunit FpoM [Methanosarcina mazei]
Length = 495
Score = 164 bits (410), Expect = 4e-39
Identities = 123/489 (25%), Positives = 218/489 (44%), Gaps = 47/489 (9%)
Query: 8 VIFSPLVAGFLAWLFNVKGIREGIGVIGALIPL-------------IGLIKLYPSLGQ-- 52
+I PL+ + + K + G G +G+L L ++ Y S+
Sbjct: 8 LILVPLIFAVVTFFTKTKQLAAGFGFLGSLATLGLTLYAYLNFDSSTAAMQFYESVSWIP 67
Query: 53 --GVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTG 110
GV+Y++ + G + ++ + A V+ + + + ++++
Sbjct: 68 FLGVNYSVGIDGVSMPLILLN--------AIVIPFMILFTWKEEMESPNRFYGLILTMQA 119
Query: 111 A-LGIFTAQDLVVFFIFWEIMTFASFMMVLKF---NRA-ASLKYFLLSIMGAYAMLVAI- 164
A +G+F A D VVF+IFWE+ F +V + NRA AS K+F+ + + + ML+ I
Sbjct: 120 AVIGVFVALDFVVFYIFWELTLVPLFFIVNLWGGANRAHASYKFFIYTHVASLVMLLGIF 179
Query: 165 GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLH 224
GL Y + + + + F +E ++ P K I+L L F K FP H
Sbjct: 180 GLFYT---ALNQTGVPTFDIRELIAQFQFFEPGLMKDG---IFLAILFGFLAKLPAFPFH 233
Query: 225 VWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAF 284
W PDAYSE + + +F +L K G YG + + M L S ++
Sbjct: 234 SWLPDAYSEAPTAGSILF--ILLKIGGYGLFRISLPM-------LPNTGSPQLMIMILGL 284
Query: 285 LGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFK 344
LG ++I+ G +LA Q+D++R+ AYSS+S +GY+++G +L + A++ SH L
Sbjct: 285 LGSVSILYGALLALRQKDLKRMIAYSSLSHMGYVILGSAGLVTLSVSGAMFQQFSHGLIM 344
Query: 345 GLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFE 404
+ F+ + G + GGLA+KMP + ++ G+P L GF +++L+
Sbjct: 345 SIMFMSAGAIQTAAGTRIINELGGLAKKMPMLTVAMMVGFMASLGLPGLTGFIAEFLVLT 404
Query: 405 AVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGT 464
+ NLP+ + + Y + FG + D +D MA++
Sbjct: 405 FTFT-NLPVFVVIALLAIVVTAGYHLWAMQRAMFGVYNEKLGDVRDINSIQVFSMAVIAL 463
Query: 465 LNVVFGVAP 473
L + FG+ P
Sbjct: 464 LVLYFGLNP 472
>sp|Q10880|Y051_MYCTU HYPOTHETICAL 65.6 KD PROTEIN RV0083 >gi|7446811|pir||D70850
probable oxidoreductase subunit - Mycobacterium
tuberculosis (strain H37RV) >gi|3261515|emb|CAA16264.1|
(AL021428) hypothetical protein Rv0083 [Mycobacterium
tuberculosis]
Length = 640
Score = 163 bits (409), Expect = 5e-39
Identities = 133/492 (27%), Positives = 221/492 (44%), Gaps = 80/492 (16%)
Query: 27 IREGIGVIGALIPLIGLIKLYPSLGQGVSYTITVGGFKL------GFMMSHLNWIFSMIA 80
+ G+GV G + L+G+ P V + + + G + GF M+ + +A
Sbjct: 11 VTSGVGVAGVGVGLLGMFG--PVRVVHVGWLLPLSGVHIELDRLGGFFMA----LTGAVA 64
Query: 81 AVVGVSAI-------LGMVSTAKDGYEWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFA 133
A VG I LG V A A M L A G T F + WE+M A
Sbjct: 65 APVGCYLIGYVRREHLGRVPMAV--VPLFVAAMLLVPAAGSVTT-----FLLAWELMAIA 117
Query: 134 SFMMVLKFN-----RAASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAV 188
S ++VL + R+A L Y +++ +G A+LV + ++ A GS F+ + A
Sbjct: 118 SLILVLSEHARPQVRSAGLWYAVMTQLGFIAILVGLVVLAAAGGSDRFAGLGA------- 170
Query: 189 STMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSK 248
+ G A +++L L+ FG KAG+ PLH W P A+ E +A+ S +
Sbjct: 171 --VCDGVRA-------AVFMLTLVGFGSKAGLVPLHAWLPRAHPEAPSPVSALMSAAMVN 221
Query: 249 AGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFA 308
G+YG + + + G +G + +GG + + G + A++ D++RL A
Sbjct: 222 LGIYGIVRFDLQLLGP---------GPRWWGLALLAVGGTSALYGVLQASVAADLKRLLA 272
Query: 309 YSSISQVGYILVGLGIGT-----------SLGIEAAIYHAISHALFKGLFFLIVATLIYR 357
YS+ +G I + LG T S+ AA+ H I+HA FK L F+ +++
Sbjct: 273 YSTTENMGLITLALGAATLFADTGAYGPASIAAAAAMLHMIAHAAFKSLAFMAAGSVLAA 332
Query: 358 TGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA----------VI 407
TG + GGLA +MP T +A L G+P GF S+WL+ ++ ++
Sbjct: 333 TGLRDLDLLGGLARRMPATTVFFGVAALGACGLPLGAGFVSEWLLVQSLIHAAPGHDPIV 392
Query: 408 SQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRP--SDIEDTKDAPLPLAIGMAILGTL 465
+ P+ G+V + + + + + + F RP + E ++AP + GMAI
Sbjct: 393 ALTTPLAVGVVALATGLSVAAMTK-AFGIGFLARPRSTQAEAAREAPASMRAGMAIAAGA 451
Query: 466 NVVFGVAPGIIA 477
+V VAP ++A
Sbjct: 452 CLVLAVAPLLVA 463
>sp|P23482|HYFB_ECOLI HYDROGENASE-4 COMPONENT B >gi|7446810|pir||A65024 hypothetical
protein b2482 (bcp 3' region) - Escherichia coli (strain
K-12) >gi|1788827|gb|AAC75535.1| (AE000335) hydrogenase
4 membrane subunit [Escherichia coli K12]
>gi|1799910|dbj|BAA16360.1| (D90876) similar to [PIR
Accession Number D49749] [Escherichia coli]
>gi|1805541|dbj|BAA16370.1| (D90877) similar to [PIR
Accession Number D49749] [Escherichia coli]
>gi|2668496|gb|AAB88564.1| (M63654) HyfB [Escherichia
coli]
Length = 672
Score = 163 bits (409), Expect = 5e-39
Identities = 146/616 (23%), Positives = 280/616 (44%), Gaps = 73/616 (11%)
Query: 5 LLAVIFSPLVAGFLAWLFNVKGIREGI-GVIGALIPLI-GLIKLYPSLGQGVSYTITVGG 62
L+ +F+ L + FL L + GI ++G +I +I G+ +L+ + +
Sbjct: 11 LILYLFASLASLFLLGLDRLAIKLSGITSLVGGVIGIISGITQLHAGVTLVARFAPPFEF 70
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEW-------LFALMSLTGALGIF 115
L M L+ ++ +++ V L ++ ++ YE F + + + +
Sbjct: 71 ADLTLRMDSLSAFMVLVISLLVVVCSLYSLTYMRE-YEGKGAAAMGFFMNIFIASMVALL 129
Query: 116 TAQDLVVFFIFWEIMTFASFMMVL----KFNRAASLKYFLLSIMGAYAMLVAIGLIYAKT 171
+ F + +E+M+ +S+ +V+ K + A + YF ++ G+ +++A L+ ++
Sbjct: 130 VMDNAFWFIVLFEMMSLSSWFLVIARQDKTSINAGMLYFFIAHAGSVLIMIAFLLMGRES 189
Query: 172 GSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAY 231
GS F+ L +P + + ++LL FG KAGM PLH W P A+
Sbjct: 190 GSLDFASFRT----------LSLSPGLA----SAVFLLAFFGFGAKAGMMPLHSWLPRAH 235
Query: 232 SETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAF-GYVIAFLGGLTI 290
+A+ SGV+ K G++G + K+ +DL P + G ++ +G ++
Sbjct: 236 PAAPSHASALMSGVMVKIGIFGIL--------KVAMDLLAQTGLPLWWGILVMAIGAISA 287
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIG-----------TSLGIEAAIYHAIS 339
++G + A ++DI+RL A+S++ VG IL+ +G+ T +G+ A++H ++
Sbjct: 288 LLGVLYALAEQDIKRLLAWSTVENVGIILLAVGVAMVGLSLHDPLLTVVGLLGALFHLLN 347
Query: 340 HALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
HALFKGL FL +I R + + G LA++MP+T I L+++ IPPL GF S+
Sbjct: 348 HALFKGLLFLGAGAIISRLHTHDMEKMGALAKRMPWTAAACLIGCLAISAIPPLNGFISE 407
Query: 400 WLIFEAVISQNL----------PILGGMVFFGSAIGFVYLIRFTYAVWF--GQRPSDIED 447
W ++++ S + PI M+ + + ++ Y + F R + E+
Sbjct: 408 WYTWQSLFSLSRVEAVALQLAGPIAMVMLAVTGGLAVMCFVKM-YGITFCGAPRSTHAEE 466
Query: 448 TKDAPLPLAIGMAILGTLNVVFGVAPGIIAKELNAI---FGRTVIGGNIWELELGFGRYN 504
++ P + + M +L L V+ ++ +A ++ I F T + L G ++
Sbjct: 467 AQEVPNTMIVAMLLLAALCVLIALSASWLAPKIMHIAHAFTNTPPATVASGIALVPGTFH 526
Query: 505 ALLVTIWLVIGLLIAGI---LYFLGASTRKVPVTDTYQSGNPVTMDYNLTIRRNFFLPLK 561
+ L++ LL + LY+L +R+ T G+ Y N P
Sbjct: 527 TQVTPSLLLLLLLAMPLLPGLYWLWCRSRRAAFRRT---GDAWACGYGW---ENAMAPSG 580
Query: 562 EAVAFWLRISFDKLYR 577
V LR+ F L+R
Sbjct: 581 NGVMQPLRVVFSALFR 596
>emb|CAA63734.1| (X93358) phaA [Sinorhizobium meliloti]
Length = 725
Score = 163 bits (408), Expect = 6e-39
Identities = 124/465 (26%), Positives = 208/465 (44%), Gaps = 44/465 (9%)
Query: 3 ELLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIK---LYPSLGQGVSYTIT 59
E LL+V AG L +F R I I L+ + LYP + G
Sbjct: 29 EKLLSVFILVPFAGSLIAIFFPSDQRGAISWFAGAIALVCFLVTAGLYPYVASGGVLHYR 88
Query: 60 VG-----GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFAL-MSLTGA 111
+ G M W+FS + +GV +L +D FAL ++ G+
Sbjct: 89 IDWVPELGLNFTLRMDGFAWLFSALITAIGVLVVLYARYYMAEEDPVPRFFALFLAFMGS 148
Query: 112 -LGIFTAQDLVVFFIFWEIMTFASFMMVLKFN-----RAASLKYFLLSIMGAYAMLVAIG 165
LG+ + +L++ +FWE+ + SF+++ ++ R A+ ++ G AM V +
Sbjct: 149 MLGVVLSGNLILLAVFWELTSIVSFLLIGYWHHNAHARDAARMALTITGTGGLAMFVGLI 208
Query: 166 LIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHV 225
+I GS+ + A G + L GT + +L LL K+ FP H
Sbjct: 209 IIGKIVGSYELDAVLAS-GDAIRNHPLYGT----------VLVLVLLGALTKSAQFPFHF 257
Query: 226 WAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFL 285
W P A + + S + KAGV+ + + +M G A+ +++
Sbjct: 258 WLPHAMAAPTPVSAYLHSATMVKAGVFLLVRFWPVMAG-----------TEAWFWIVGLA 306
Query: 286 GGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKG 345
G T+++G A Q+D++ L AYS+IS +G I V L +G+ L AA++H ++HA FK
Sbjct: 307 GLTTLLLGAYFAIFQQDLKGLLAYSTISHLGLITVLLSLGSPLAAVAAVFHIVNHATFKA 366
Query: 346 LFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
F+ + + +G + + GGL MP T T+A +A ++AG+P L GF SK + F
Sbjct: 367 SLFMAAGIIDHESGTRDIRRLGGLFHFMPITATLAMVASAAMAGVPLLNGFLSKEMFFAE 426
Query: 406 VISQNL-----PILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDI 445
I +L + + Y +RF + V+FG+ P+D+
Sbjct: 427 AIETHLVNPLDTVTPYVATIAGMFAVTYSLRFIHGVFFGRPPADL 471
>gb|AAG19080.1| (AE005007) NADH dehydrogenase/oxidoreductase; NdhG2 [Halobacterium
sp. NRC-1]
Length = 380
Score = 163 bits (408), Expect = 6e-39
Identities = 106/408 (25%), Positives = 179/408 (42%), Gaps = 52/408 (12%)
Query: 105 LMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVL----KFNRAASLKYFLLSIMGAYAM 160
++ + G G+ DL ++F EI ++ +V + A+LKY L+ GA
Sbjct: 1 MLLVAGLSGMTVTADLFNMYVFLEITGLTAYALVAAGEDSRSTVAALKYLLVGTFGASLF 60
Query: 161 LVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGM 220
L+ IG Y TG+ + +D++A + P ++ ALI ++ +K +
Sbjct: 61 LLGIGYAYVGTGTLNMADLAA--------KLADADPVLAQAAFALI----VVGLFIKVAV 108
Query: 221 FPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGY 280
FPLH W PDAY+ + +A+ S ++S Y + + ++G +D V A G
Sbjct: 109 FPLHTWQPDAYAGAPDTVSALISALVSTVAAYALLRVVYTVFGAGFLDSTPVARAILIGG 168
Query: 281 VIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISH 340
+ ++I+ G +LA Q +I+R+ AYSS+SQ G IL + IG + A H + H
Sbjct: 169 AV-----VSIVAGSLLAVSQSEIKRVLAYSSVSQFGLILAAIAIGNDTALTGAAIHLVGH 223
Query: 341 ALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKW 400
A+ KG FL + TG +F GLA++ P + +S+ G+PP VGFA KW
Sbjct: 224 AVMKGGLFLTAGVVATETGARTIDEFDGLADRSPVAAGAFGVLAVSMVGVPPTVGFAGKW 283
Query: 401 LIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDI-----EDTKDAPLPL 455
I L ++ + + Y +R ++F + P+ + D + P
Sbjct: 284 YIAIGAAEAGSWALLAVIVASTLLTLAYFLRLVERMFF-RAPATVPADGRSDGAETPASS 342
Query: 456 AIGMAILGTLNVVFGVAPGIIAKELNAIFGRTVIGGNIWELELGFGRY 503
+ GM TV+G + + LGFG +
Sbjct: 343 STGMY-------------------------ATVVGATVCAVALGFGAF 365
>pir||D64463 conserved hypothetical protein MJ1309 - Methanococcus jannaschii
>gi|1591948|gb|AAB99316.1| (U67571) carbon monoxide
dehydrogenase, hydrogenase anchor subunit CooM (cooM)
[Methanococcus jannaschii]
Length = 481
Score = 163 bits (408), Expect = 6e-39
Identities = 138/497 (27%), Positives = 229/497 (45%), Gaps = 47/497 (9%)
Query: 1 MNELLLAVIFSPLVAGFLAWLFN-----VKGIREGIGVIGALIPLIGLIKLYPSLGQGVS 55
MN L + ++F PL+ + L + VK I I ++P I Y G GV
Sbjct: 1 MNYLPMMIVF-PLIMAIIMNLLHGKEKAVKYITFITAAILIILPFISQYGYYYFGGHGV- 58
Query: 56 YTITVGGFKLGFMMSH---LNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTGAL 112
V G+ G + I ++ + + I GM K+ +LM
Sbjct: 59 ----VNGWVSGIAYLYNPAKQAIIVTLSLIASLVLITGMGEKLKNNMFVTLSLMGFASIA 114
Query: 113 GIFTAQDLVVFFIFWEIMTFAS----FMMVLKFNRAASLKYFLLSIMGAYAMLVAIGLIY 168
I A D+ ++F+EI++ F+ + A L+Y ++ + A ML+ I +
Sbjct: 115 AIVLADDIFNLYVFFEIVSIVQAGLVFLSGTEEAYKAGLRYMIMGNVAAALMLLGIAFLL 174
Query: 169 AKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAP 228
A TG+ + +D+ + + + M+ G L+ L+ LA+G AG+ P H
Sbjct: 175 ASTGTLNITDMKHYLLVD--NPMIYG---------GLLLLIVGLAYG--AGLPPFHNVKA 221
Query: 229 DAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGL 288
D Y+ + +A+ SK + G +++ + KL L SA A V+ LG L
Sbjct: 222 DLYARSKGFISAMLQ-TYSKFVLVGLMIIIL----KLFNGLDYFASAHA---VLIALGVL 273
Query: 289 TIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFF 348
++ G ++A LQ D ++L AY +ISQ GY+ GL +GT LGI A I+HAI+H ++K F
Sbjct: 274 AMVFGVVMALLQSDYKKLLAYHAISQGGYVATGLALGTPLGIVAGIFHAINHVIYKSALF 333
Query: 349 LIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVIS 408
L + + G K GGL MP M A L+++GIPP GF SKW++ +A +
Sbjct: 334 LGAYIVSCKRGSNLHK-LGGLLPLMPSVAFMVLCAKLAISGIPPFNGFQSKWMLAQAAMQ 392
Query: 409 QNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIE-----DTKDAPLPLAIGMAILG 463
N+P + ++ S FV +++ Y ++ +P D E K+ P + +L
Sbjct: 393 VNMPEIAIIMIIVSIGTFVSMMKAFYLIYL--KPVDEETLKEYQNKEVPKLAVFSLFVLT 450
Query: 464 TLNVVFGVAPGIIAKEL 480
L ++ G+ P I+ L
Sbjct: 451 ALCIIIGLYPDIVTNYL 467
>gb|AAF65741.1|AF228525_11 (AF228525) F420H2 dehydrogenase subunit FpoN [Methanosarcina mazei]
Length = 493
Score = 162 bits (407), Expect = 8e-39
Identities = 112/466 (24%), Positives = 207/466 (44%), Gaps = 37/466 (7%)
Query: 23 NVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTITVGGFKLGFMMSHLNWIFSMIAAV 82
N+ G +G + A+ + L G V YTI + + +F +A +
Sbjct: 33 NILGYLATLGTLAAIFLTVKSFGLLTMEGFSVQYTIFSETLSIDALSQFFKLVFLAVALI 92
Query: 83 VGVSAILGMVSTAKDGYEWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKF 141
V +++I ++ + L + G + + +A DL++ F +E+ + A+F + +
Sbjct: 93 VSIASIKYTENSDHTEEFYTLVLFATFGMMIVASANDLILLFCAFELASLATFALAGFEK 152
Query: 142 NRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPA 197
A SL KYF++ + A ML + +Y TG+ S I+ G +L G P
Sbjct: 153 QNARSLEGAMKYFVIGSVSAALMLFGLSFVYGATGTTSIPLIAQNPG------LLTGNP- 205
Query: 198 FSKLDVALIYLLFLLA-FGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFIL 256
+ ++ ++ L A FG K + P H+WAPD Y + +A+ + K G
Sbjct: 206 -----IGIVAIVLLTAGFGFKMALVPFHMWAPDTYQGSPSVVSALLAAGSKKMGFVAAFR 260
Query: 257 LYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVG 316
++I+ L P + ++ L +T+ G ++A Q ++R+ AYSS++Q G
Sbjct: 261 VFIIALAAL---------QPDWQFMFTLLAVVTMTFGNVVAVAQTSVKRMLAYSSLAQAG 311
Query: 317 YILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIY-----RTGKTEFKD----FG 367
YI + + T + + I + ++HA K F+ A +++ +TG + D F
Sbjct: 312 YIAMAFAVMTPVALAGGIMYTLAHAFMKAGAFIAAAAVVWMITSEKTGNLDIPDHLDSFR 371
Query: 368 GLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFV 427
GL ++MP + + +LAGIPP GF +K+++F + I + L + SA+
Sbjct: 372 GLGKRMPLAALCMTVFVFALAGIPPTAGFMAKFVLFSSTIQAGMTWLAVIAILNSALSLF 431
Query: 428 YLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLNVVFGVAP 473
Y R ++F P + P P A + + +V G+ P
Sbjct: 432 YYARLVKYMYF-MPPEGKTEKVSIPFPYAAALLVAVAGVLVMGLWP 476
>pir||S77331 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4.1a -
Synechocystis sp. (strain PCC 6803)
>gi|1652513|dbj|BAA17434.1| (D90906) NADH dehydrogenase
subunit 4 [Synechocystis sp.]
Length = 502
Score = 161 bits (403), Expect = 2e-38
Identities = 123/460 (26%), Positives = 210/460 (44%), Gaps = 53/460 (11%)
Query: 4 LLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLY---------------P 48
LL+ + L+ GF K +R+ V L + L+ L+ P
Sbjct: 5 LLILPVIGALIIGFFPGNIPAKQLRQITEVFAVLTLVWSLLVLFKFDVTDPQFQFQEYLP 64
Query: 49 SLGQ-GVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMS 107
+ Q G++Y++ + G L + I + + V + +I V+ ++ Y + L+
Sbjct: 65 WIPQLGLNYSLAIDGLSLPLV------ILNNLLTGVAIYSIGPNVNRSRLYYGLI--LLI 116
Query: 108 LTGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA----ASLKYFLLSIMGAYAMLVA 163
G G AQ+L++F +F+E+ ++M+ + AS+K+ L + +L A
Sbjct: 117 NAGISGALLAQNLLLFIVFYELELIPFYLMIAIWGGEKRGYASMKFLLYTAFSGLLVLAA 176
Query: 164 IGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPL 223
+ +GS SF + E T F++ ++ +L LL FG+K + PL
Sbjct: 177 FLGMSLLSGSHSFD-----YNPEITQT-------FTESAQTILLILILLGFGIKIPLVPL 224
Query: 224 HVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIA 283
H W PDAY+E + + G+L+K G YG I+ +G L + AP V+A
Sbjct: 225 HTWLPDAYTEASPATAILLGGILAKLGTYG-----IIRFGLQLFPQTWAQFAP----VLA 275
Query: 284 FLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALF 343
+G +T++ G + A Q+DI+R+ AYSSI +GYILV GT L + A+ +SH L
Sbjct: 276 IIGTVTVLYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTELSVLGAVAQMVSHGLI 335
Query: 344 KGLFFLIVATLIYRTGKTEFKDFGGLAEK---MPFTFTMAFIAILSLAGIPPLVGFASKW 400
L F +V + + G + GL +P T + ++ AGIP LVGFA+++
Sbjct: 336 LALLFHLVGIVERKAGTRDLDVLNGLMNPIRGLPLTSALLITGGMASAGIPGLVGFAAEF 395
Query: 401 LIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQ 440
++F+ PI + S + VY + FG+
Sbjct: 396 IVFQGSF-PTFPIPTLLCILASGLTAVYFVILLNRTCFGK 434
>gb|AAF13041.1|AF157639_1 (AF157639) putative formate hydrogenlyase integral membrane subunit
[Desulfitobacterium dehalogenans]
Length = 637
Score = 161 bits (403), Expect = 2e-38
Identities = 144/583 (24%), Positives = 260/583 (43%), Gaps = 67/583 (11%)
Query: 25 KGIREGIGVIGALIPLIGLIKLYPSLGQG-VSYTITVGGFKLGFMMSHLNWIFSM---IA 80
+G+R G + ++ ++G+ L + G S V GF + + ++ + +A
Sbjct: 7 RGVRIGTMSLTLVMAILGIFFLGWNFPVGDPSGQWNVAGFSFDGLTAFFLFLLFLGQGVA 66
Query: 81 AVVGVSAIL---GMVSTAKDGYEWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMM 137
++ G+ + G S W+ L S+ G L + F WE+M+ SF +
Sbjct: 67 SLYGLGYMKEYEGKKSLISFSLSWVAFLGSMAGVLLVNNG---FYFLFLWELMSLFSFFL 123
Query: 138 VL-----KFNRAASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTML 192
V+ NR A+ YF+++ +G ++ A+ +Y+KTGSF + D +A + + +
Sbjct: 124 VVYEHEETSNRKAAFIYFVMTHVGTVFLIAAVLYLYSKTGSFLYGDWAAIASELSPGEKI 183
Query: 193 GGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVY 252
F FG KAG+ P H+W P A+ +A+ SGV+ K +Y
Sbjct: 184 VSFYVFG-------------GFGTKAGLVPFHIWLPYAHPVAPSPVSALMSGVMVKIALY 230
Query: 253 GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSI 312
+ L L + + G G ++A LG L+ +G + A ++ +++RL AYS++
Sbjct: 231 MIMRLVWLTLAPMELWWG--------GLMLA-LGVLSAFIGILYACVERNVKRLLAYSTV 281
Query: 313 SQVGYILVGLG---IGTSLG--------IEAAIYHAISHALFKGLFFLIVATLIYRTGKT 361
+G + + LG I +LG + A +H + H LFK F+ +I T
Sbjct: 282 ENMGILTMALGTAMIAQTLGYTELVVLALAAFFWHGVHHLLFKSNMFMAAGNIIQATHTK 341
Query: 362 EFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPILGGM---- 417
+ GGL +KMP T A + + LA +PPL GF +WL+F A+ ++ + GG+
Sbjct: 342 KLDQMGGLLKKMPRTGLWAMVGAVGLAALPPLGGFWGEWLLFHALWKTSIQVGGGLLKLM 401
Query: 418 -------VFFGSAIGFVYLIRFTYAVWFGQ-RPSDIEDTKDAPLPLAIGMAILGTLNVVF 469
+ F SA+ ++++ + GQ R ++ E ++ P + M L ++
Sbjct: 402 LPLILTALAFVSALALATMVKWFSGAFLGQARTANAEKAQELPWSQTVSMGSSMMLTLLI 461
Query: 470 GVAPGIIAKELNA---IFGRTVIGGNIWELELGFGRYNALLVTIWLVIGLLIAGILYFLG 526
+ P + K ++ + L F L+T ++++ L +G LY L
Sbjct: 462 LLWPQGLLKLMSVPIQVLSYQSSSSLTDSLISPFFSDFLSLITPYILLLGLFSGTLYLLS 521
Query: 527 ASTRKVPVTDTYQSGNPVT--MDY-NLTIRRNFFLPLKEAVAF 566
R+ V+ T+ G P+T M Y +L I + LK +AF
Sbjct: 522 GGKRR-RVSGTWNCGVPLTPRMQYTSLGITMPLRIVLKRILAF 563
>pir||E83315 NADH dehydrogenase I chain M PA2648 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948717|gb|AAG06036.1|AE004693_7 (AE004693) NADH
dehydrogenase I chain M [Pseudomonas aeruginosa]
Length = 509
Score = 160 bits (400), Expect = 5e-38
Identities = 123/498 (24%), Positives = 227/498 (44%), Gaps = 54/498 (10%)
Query: 8 VIFSPLVAGFLAWL--FNVKGIREGIGVIGALIPLI--------GLIKLYPSLGQGVSYT 57
+I P + GFL W+ + K + I ++ + LI G +L P+ G +T
Sbjct: 6 LILIPFIGGFLCWIAEHSSKTLPRWIALLSMTLVLILSLWIWATGDFQLAPAPGGEPEWT 65
Query: 58 ITVG-------GFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKD--GYEWLFALMSL 108
+ G + M L+ + + ++GV ++L + + G+ L L L
Sbjct: 66 LQFKVLWIERLGISIHLAMDGLSLLMVALTGLLGVLSVLCSWNEIQRRIGFFHLNLLWIL 125
Query: 109 TGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA----------ASLKYFLLSIMGAY 158
G +G+F A DL +FF FWE+M + ++ + + A+ K+F+ +
Sbjct: 126 GGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHSSDDGKKTRIYAATKFFIFTQASGL 185
Query: 159 AMLVAI-GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVK 217
MLVAI GL++ +F+ + + F + T L + L+ L F +AF VK
Sbjct: 186 VMLVAILGLVFV---NFNATGVITFDYATLLKTQLSPHVEW------LLMLGFFVAFAVK 236
Query: 218 AGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPA 277
+ P+H W PDA+++ + + +G+L K YG I + ++ ++
Sbjct: 237 MPVVPVHSWLPDAHAQAPTAGSVDLAGILLKTAAYGLIRFALPLFPN---------ASAE 287
Query: 278 FGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHA 337
F + +LG + I G +L+ Q DI+RL AYSS+S +G++++G+ G+ + ++ +
Sbjct: 288 FAPIAMWLGIIGIFYGALLSFAQTDIKRLVAYSSVSHMGFVMIGIYSGSQVALQGVVVQM 347
Query: 338 ISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFA 397
I+H L F++ L R + + GGL +MP+ ++ + G+P F
Sbjct: 348 IAHGLSAAALFILCGQLYERLHTRDMRKMGGLWSRMPYLPAISLFFASASLGLPGTGNFV 407
Query: 398 SKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSD--IEDTKDAPLPL 455
++LI + +P++ + FG VY + + +FG SD I L +
Sbjct: 408 GEFLILIGAF-KVVPVIIVIATFGLVFASVYSLIMIHRAYFGPSQSDEPILGLDARELSM 466
Query: 456 AIGMAILGTLNVVFGVAP 473
+G+A+ L V+ GV P
Sbjct: 467 VLGLAV---LLVLLGVYP 481
>gi|11497577 NADH dehydrogenase ND5 subunit [Spinacia oleracea]
>gi|7636158|emb|CAB88780.1| (AJ400848) NADH
dehydrogenase ND5 subunit [Spinacia oleracea]
Length = 742
Score = 159 bits (399), Expect = 7e-38
Identities = 117/389 (30%), Positives = 191/389 (49%), Gaps = 45/389 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G++M L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 84 EFGYLMDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 143
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I +Y TGSF
Sbjct: 144 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGSF 203
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + ++ S + +LLF A K+ FPLHVW PDA
Sbjct: 204 EFRDLFEIF-----NNLIKNNEVNSLFCILCAFLLFAGAVA-KSAQFPLHVWLPDAMEGP 257
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L ++ P YVI+F+G +T+++G
Sbjct: 258 TPISALIHAATMVAAGI--FLVARLLPLFVVI---------PYIMYVISFIGIITVLLGA 306
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AY ++SQ+GY+++ LG+G+ A++H I+HA K L FL +L
Sbjct: 307 TLALAQKDIKRSLAYYTMSQLGYMMLALGMGS---YRTALFHLITHAYSKALLFLASGSL 363
Query: 355 IYRTG---------KTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G GGL + +P T T I LSL GIPPL F SK +
Sbjct: 364 IHSMGTIVGYSPDKSQNMVLMGGLTKHVPITKTSFLIGTLSLCGIPPLACFWSK----DE 419
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIR 431
+++ + PI + +F + + Y+ R
Sbjct: 420 ILNDSWVYSPIFAIIAYFTAGLTAFYMFR 448
>gb|AAF08891.1|AF194860_1 (AF194860) NADH dehydrogenase [Cistanthe guadalupensis]
Length = 692
Score = 159 bits (398), Expect = 9e-38
Identities = 114/354 (32%), Positives = 181/354 (50%), Gaps = 38/354 (10%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 63 EFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 122
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 123 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 182
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + ++ + +LLF A K+ FPLHVW PDA
Sbjct: 183 EFQDLFEIF-----NNLINNNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEGP 236
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L ++ P+ I+F+G +T+++G
Sbjct: 237 TPISALIHAATMVAAGI--FLVARLLPLFVVI---------PSIMNGISFIGIITVLLGA 285
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL ++
Sbjct: 286 TLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGSV 342
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
I+ G + +K GGLA+ +PFT T I LSL GIPPL F SK
Sbjct: 343 IHSMEAIVGYSPYKSQNMVLMGGLAKHVPFTKTAFLIGTLSLCGIPPLACFWSK 396
>pir||G82822 NADH-ubiquinone oxidoreductase, NQO13 subunit XF0317 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105140|gb|AAF83128.1|AE003884_13 (AE003884)
NADH-ubiquinone oxidoreductase, NQO13 subunit [Xylella
fastidiosa]
Length = 501
Score = 159 bits (398), Expect = 9e-38
Identities = 126/500 (25%), Positives = 227/500 (45%), Gaps = 70/500 (14%)
Query: 4 LLLAVIFSPLVAGFLAW-LFNVKGIR-----EGIGVIGALIPLIGLIKLYPSLGQGVSYT 57
LL +I+ P++ G L L NV R + G + L+G + Q V
Sbjct: 6 LLSLLIWLPIIGGLLILGLRNVHVARWAALAVALATFGFSLYLLGGYDIAKDALQFVEQH 65
Query: 58 ITVGGFKLGFMMS--HLNWIFSMIAAVVGVSAILGMVSTAKDGY-EWLFALMSLTGA-LG 113
+ + + +G+ + + ++ +V V ++G +++ A + L G +G
Sbjct: 66 VWIQTYSIGYNLGVDGIAVALVLLTTLVTVLVLIGSWGAINQRVPQYVAAFLILEGVTIG 125
Query: 114 IFTAQDLVVFFIFWEIMTFASFMMVLKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYA 169
IF A D ++F++F+E M F+++ + A++K+FL + +G+ MLV + +Y
Sbjct: 126 IFAATDAMLFYVFFEAMLIPMFLIIGVWGGPRRIYAAIKFFLYTFLGSVLMLVGLIYLYL 185
Query: 170 KTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPD 229
K GSF +D+ A S + ++ FL+AF VK MFP+H W PD
Sbjct: 186 KGGSFQLADLYAM--------------QLSAKEQTWLFFAFLIAFAVKVPMFPVHTWLPD 231
Query: 230 AYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLT 289
A+ E + + I + + K G YGF+ + + ++ F +V+ L +
Sbjct: 232 AHVEAPTAGSVILAAIALKIGGYGFLRFNLPIVPD---------ASHEFAWVVIALSLIA 282
Query: 290 IIVGGILAALQEDIRRLFAYSSISQVGYILVGLGI------------GTSLGIEAAIYHA 337
+I G++A +QED+++L AYSSI+ +G++ +G+ I LG++ A+
Sbjct: 283 VIYVGLVALVQEDMKKLIAYSSIAHMGFVTLGIFISFTLVRDFGNTDAARLGLQGAMVQM 342
Query: 338 ISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFA 397
ISH G F + L R D+GG+ MP+ T A ++ AG+P GF
Sbjct: 343 ISHGFVSGAMFTCIGVLYDRMHTRCIADYGGVVNVMPWFATFAMFFYMANAGLPGTSGFV 402
Query: 398 SKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRP--SDIEDTKDAPLP- 454
++++ A ++ +V FG+ G +I Y +W +R ++ +T A L
Sbjct: 403 GEFMVILASFQKH-----PLVAFGA--GATLVITAAYTLWLYKRVFFGEVANTHVAALKD 455
Query: 455 -----------LAIGMAILG 463
AIG+ +LG
Sbjct: 456 INIREASVLALFAIGVLVLG 475
>gb|AAF08854.1|AF194822_1 (AF194822) NADH dehydrogenase [Amaranthus quitensis]
Length = 688
Score = 158 bits (396), Expect = 2e-37
Identities = 119/396 (30%), Positives = 194/396 (48%), Gaps = 59/396 (14%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 65 EFGYLLDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 124
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I +Y TGSF
Sbjct: 125 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGSF 184
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + ++ S + +LLF A K+ FPLHVW PDA
Sbjct: 185 EFRDLFEIF-----NNLINANQVNSLFCILCAFLLFAGAVA-KSAQFPLHVWLPDAMEGP 238
Query: 235 DQSYTAIFSGVLSKAGVYG-------FILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGG 287
I + + AG++ FI++ +MYG I+F+G
Sbjct: 239 TPISALIHAATMVAAGIFLVARLLPLFIVIPYIMYG------------------ISFIGI 280
Query: 288 LTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLF 347
+T+++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L
Sbjct: 281 ITVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALL 337
Query: 348 FLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFAS 398
FL ++I+ G + K GGL + +P T I LSL GIPPL F S
Sbjct: 338 FLGSGSIIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKNAFLIGTLSLCGIPPLACFWS 397
Query: 399 KWLIFEAVISQNL---PILGGMVFFGSAIGFVYLIR 431
K + ++S +L PI + +F + + Y+ R
Sbjct: 398 K----DEILSDSLIYSPIFAIISYFTAGLTAFYMFR 429
>gb|AAG26149.1| (AF123801) NADH dehydrogenase subunit F [Cabomba caroliniana]
Length = 414
Score = 158 bits (396), Expect = 2e-37
Identities = 117/367 (31%), Positives = 182/367 (48%), Gaps = 44/367 (11%)
Query: 55 SYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--T 109
S+TIT + G+++ L I ++ VG+ ++ + GY FA M+ T
Sbjct: 57 SWTITSDFSLEFGYLIDPLTSIMLILITTVGIMVLIYSDNYMSHDRGYLRFFAYMTFFTT 116
Query: 110 GALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAI 164
LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I
Sbjct: 117 SMLGLVTSPNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 176
Query: 165 GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLH 224
Y TGSF F D+ F + ++ S +LLFL A K+ FPLH
Sbjct: 177 LGFYLLTGSFEFQDLFEIFN----NLIINNNEINSSFATLCAFLLFLGAVA-KSAQFPLH 231
Query: 225 VWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYV 281
VW PDA I + + AG++ + L+I++ P +
Sbjct: 232 VWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNI 277
Query: 282 IAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHA 341
IA +G +T+++G LA Q DI+R AYS++SQ+GYI++ LGIG+ AA++H I+HA
Sbjct: 278 IALIGIITVLLGATLALAQRDIKRSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHA 334
Query: 342 LFKGLFFLIVATLI--------YRTGKTE-FKDFGGLAEKMPFTFTMAFIAILSLAGIPP 392
K L FL ++I Y K++ GGL + MP T T F+ LSL GIPP
Sbjct: 335 YSKALLFLGSGSIIHSMEPIVGYSPAKSQNMALMGGLTKYMPITKTTFFLGTLSLCGIPP 394
Query: 393 LVGFASK 399
L F SK
Sbjct: 395 LACFWSK 401
>gb|AAF08868.1|AF194837_1 (AF194837) NADH dehydrogenase [Montiopsis umbellata]
Length = 680
Score = 158 bits (395), Expect = 2e-37
Identities = 115/354 (32%), Positives = 181/354 (50%), Gaps = 38/354 (10%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MSL T LG+ T+ +
Sbjct: 53 EFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSLXNTSMLGLVTSSN 112
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 113 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 172
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + ++ + +LLF A K+ FPLHVW PDA
Sbjct: 173 EFRDLFEIF-----NNLINNNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEGP 226
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L + + + + IAF+G +T+++G
Sbjct: 227 TPISALIHAATMVAAGI--FLIARLL---PLFVVIPYIMNG------IAFIGIITVLLGA 275
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL ++
Sbjct: 276 TLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGCGSV 332
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
I+ G + K GGL + +PFT T I LSL GIPPL F SK
Sbjct: 333 IHSMEAIVGYSPDKSQNMVLMGGLTKHVPFTKTSFLIGTLSLCGIPPLACFWSK 386
>gb|AAF08861.1|AF194829_1 (AF194829) NADH dehydrogenase [Tetragonia tetragonioides]
Length = 689
Score = 158 bits (395), Expect = 2e-37
Identities = 127/452 (28%), Positives = 216/452 (47%), Gaps = 52/452 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+LG+ + L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 62 ELGYFIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 121
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I +Y TGSF
Sbjct: 122 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRIGDFGLLLGILGLYWITGSF 181
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F ++++ + + LF A K+ FPLHVW PDA
Sbjct: 182 EFGDLFEIF-----NSLINNNETHFLFCILCAFFLFAGAVA-KSAQFPLHVWLPDAMEGP 235
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L ++ P Y+I+F+G +T+++G
Sbjct: 236 TPISALIHAATMVAAGI--FLVARLLPLFTVI---------PYIMYIISFIGIITVLLGA 284
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL ++
Sbjct: 285 TLALAQKDIKRSLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLGSGSI 341
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K GGL +P T T I LSL GIPPL F SK +
Sbjct: 342 IHSMEAIVGYSPDKSQNMVLMGGLTRHVPITKTAFLIGTLSLCGIPPLACFWSK----DE 397
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAIL 462
+++ + PI + +F + + Y+ R + G ++ +++
Sbjct: 398 ILNDSWLYSPIFAIIAYFTAGLTAFYMFRIYLLTFEGPLNVYFKNYNGKKSSSFYSISLW 457
Query: 463 G-----TLNVVFGVAPGIIA--KELNAIFGRT 487
G T+N FG+ +I KE ++ F +T
Sbjct: 458 GKEGLQTINKNFGLLTLLIMNNKERSSFFSKT 489
>emb|CAC12090.1| (AL445066) NADH dehydrogenase, chain L related protein
[Thermoplasma acidophilum]
Length = 635
Score = 158 bits (395), Expect = 2e-37
Identities = 131/491 (26%), Positives = 231/491 (46%), Gaps = 42/491 (8%)
Query: 8 VIFSPLVAGFLAWLFNVKGIREGIGVIGA----LIPLIGLIKLYPSLGQGVSYTIT-VGG 62
+ SPL+ GFL L K R G I + L + +I + + + + T
Sbjct: 10 IFISPLI-GFLLTLIIGKYYRRWSGAIASFFIFLAFIFSVITYFTVIKHPIYNSYTWFYN 68
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKD--GYEWLFALMSL--TGALGIFTAQ 118
G + +L + +M+ + V + L + KD FA +L G LG+ +
Sbjct: 69 IDFGIYIDNLAIVMAMMVSFVSLMIHLFAIYYMKDDPNKHVYFAETALFTAGMLGLVISS 128
Query: 119 DLVVFFIFWEIMTFASFMMV----LKFNR-AASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+LV+ F+FWE++ S++++ K N AA+ K F+++ +G + ++ + ++Y +
Sbjct: 129 NLVLLFLFWELVGLCSYLLIGFWFFKPNATAAAKKAFIVTRVGDLSFIIGMSILYYSLIN 188
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
+ +S + +S A K+ + +I + L A K+ FPLHVW PDA
Sbjct: 189 VTKDPLSIPY---LISNASSIAVAIGKVRLGIIAIFILGAAIGKSAQFPLHVWIPDAMEG 245
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLY-ILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIV 292
I + + AGVY L+ + +Y +AP Y +A +G T +
Sbjct: 246 PTTVSALIHAATMVTAGVYLVARLFQVFLY-----------AAPFAMYAVAIVGSFTALY 294
Query: 293 GGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLG---IEAAIYHAISHALFKGLFFL 349
GI+ + D++R+ AYS+ISQ+GY+L +G+ +G + ++H ISHA+FK L F+
Sbjct: 295 AGIVGLVVNDVKRILAYSTISQLGYMLAAIGLAPIIGGVAVSLGMFHLISHAIFKALLFM 354
Query: 350 IV-ATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA--- 405
A L+ + K GGL ++MP T T+ FI L+L P G+ SK I A
Sbjct: 355 SAGAFLVAMMDLRDAKQMGGLWKRMPVTTTLFFIGSLALVAFPGTSGYFSKDPIIFASYN 414
Query: 406 VISQNLPILGGM----VFFGSAIGFVYLIRFTYAVWFGQRPSDI-EDTKDAPLPLAIGMA 460
+++L + G + + GS + +Y R + V G+ S + E +D P+ + +
Sbjct: 415 YFTKSLSVAGFLPLLFLMTGSLLTTLYTFRMFFLVAVGKPRSTLAERARDPPIVALLPLM 474
Query: 461 ILGTLNVVFGV 471
+L ++ GV
Sbjct: 475 VLSIFALILGV 485
>gb|AAF37198.1| (AF191809) NADH dehydrogenase subunit F [Carex donnell-smithii]
Length = 705
Score = 158 bits (395), Expect = 2e-37
Identities = 118/389 (30%), Positives = 194/389 (49%), Gaps = 45/389 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ L I + VG++ ++ + Y FA ++L A LG+ T+ +
Sbjct: 80 EFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSHDQAYLRFFAYLNLFNASMLGLVTSSN 139
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWEI+ S++++ F R A K F+ + +G + +L+ I Y GSF
Sbjct: 140 LIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILAFYWIIGSF 199
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ E + ++ S +LLF+ A K+ FPLH+W PDA
Sbjct: 200 EFRDLF-----EITNNLIQKNGVNSLFTTLCTFLLFVGAIA-KSAQFPLHIWLPDAMEGP 253
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AGV+ L ++ LLI P ++I+ +G +T+ +G
Sbjct: 254 TPISALIHAATMVAAGVF----LVARLFPLLLI-------TPNIMHIISLIGLITLFLGA 302
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q DI+R AYS++SQ+GYI++ LGIG+S AA++H I+HA K L FL ++
Sbjct: 303 TLALAQLDIKRSLAYSTMSQLGYIILALGIGSS---RAALFHLITHAYSKALLFLGSGSI 359
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + +K+ GGL + +P T T + LSL GIPPL F SK +
Sbjct: 360 IHSMEPVVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSK----DE 415
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIR 431
++S + PI G + +F + + Y+ R
Sbjct: 416 ILSNSWLYCPIFGIITYFTTGLTAFYMFR 444
>gb|AAF08880.1|AF194849_1 (AF194849) NADH dehydrogenase [Montiopsis berteroana]
Length = 692
Score = 157 bits (394), Expect = 3e-37
Identities = 115/354 (32%), Positives = 181/354 (50%), Gaps = 38/354 (10%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MSL T LG+ T+ +
Sbjct: 65 EFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSSN 124
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 125 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 184
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + ++ + +LLF A K+ FPLHVW PDA
Sbjct: 185 EFRDLFEIF-----NNLINNNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEGP 238
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L + + + + IAF+G +T+++G
Sbjct: 239 TPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------IAFIGIITVLLGA 287
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL ++
Sbjct: 288 TLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGCGSV 344
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
I+ G + K GGL + +PFT T I LSL GIPPL F SK
Sbjct: 345 IHSMEAIVGYSPDKSQNMVLMGGLTKHVPFTKTSFLIGTLSLCGIPPLACFWSK 398
>gb|AAF08872.1|AF194841_1 (AF194841) NADH dehydrogenase [Ceraria fruticulosa]
Length = 697
Score = 157 bits (394), Expect = 3e-37
Identities = 121/387 (31%), Positives = 195/387 (50%), Gaps = 39/387 (10%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTA--KDGYEWLFALMSL--TGALGIFTAQ 118
F+LG+++ L I SM+ V + ++ + GY FA MS T LG+ T+
Sbjct: 63 FELGYLIDPLTSIMSMLITTVAILVLIYSDNYMFHDQGYLRFFAYMSFFNTSMLGLVTSS 122
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ +S++++ F R A K F+ + +G + +L+ I IY TGS
Sbjct: 123 NLIQIYIFWELVGMSSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGS 182
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + ++ + +LLF A K+ FPLHVW PDA
Sbjct: 183 FEFRDLFEIF-----NNLINNNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEG 236
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVG 293
I + + AG+ F++ +L L + + + + IAF+G +T+++G
Sbjct: 237 PTPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------IAFIGIVTVLLG 285
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL +
Sbjct: 286 ATLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGS 342
Query: 354 LIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFE 404
+I+ G + K GGL + +P T T I LSL GIPPL F SK I +
Sbjct: 343 VIHSMEAIVGYSPDKSQNMVLMGGLRKHVPITKTAFLIGTLSLCGIPPLACFWSKDEILD 402
Query: 405 AVISQNLPILGGMVFFGSAIGFVYLIR 431
+ PI + +F + + Y+ R
Sbjct: 403 DSWLYS-PIFAIIAYFTAGLTAFYMFR 428
>gb|AAF37201.1| (AF191812) NADH dehydrogenase subunit F [Carex scirpoidea]
Length = 682
Score = 157 bits (394), Expect = 3e-37
Identities = 117/397 (29%), Positives = 195/397 (48%), Gaps = 45/397 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ L I + VG++ ++ + Y FA ++L A LG+ T+ +
Sbjct: 71 EFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSHDQAYSRFFAYLNLFNASMLGLVTSSN 130
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWEI+ S++++ F R A K F+ + +G + +L+ I Y GSF
Sbjct: 131 LIQIYIFWEIVXICSYLLIXFWFTRPLXANACQKAFVXNXIGXFGLLLGIXXXYWIIGSF 190
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F + E + ++ S +LLF+ A K+ FPLH+W PDA
Sbjct: 191 EFRYLF-----EITNNLIQKNGVNSLFTTLCTFLLFVGAIA-KSAQFPLHIWLPDAMEGP 244
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AGV+ L ++ LLI P ++I+ +G +T+++G
Sbjct: 245 TPXSALIHAATMVAAGVF----LVARLFPLLLI-------TPNIMHIISSIGLITLVLGA 293
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q DI+R AYS++SQ+GYI++ LGIG S AA++H I+HA K L FL ++
Sbjct: 294 TLALAQLDIKRSLAYSTMSQLGYIILALGIGXS---RAALFHLITHAYSKALLFLGSGSI 350
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + +K+ GGL + +P T T + LSL GIPPL F SK +
Sbjct: 351 IHSMEPVVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSK----DE 406
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFG 439
++S + PI G + +F + + Y+ ++ G
Sbjct: 407 ILSNSWLYSPIFGIITYFTTGLTAFYMFXVYXLIFDG 443
>gb|AAF08881.1|AF194850_1 (AF194850) NADH dehydrogenase [Montiopsis cumingii]
Length = 691
Score = 157 bits (394), Expect = 3e-37
Identities = 115/354 (32%), Positives = 181/354 (50%), Gaps = 38/354 (10%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MSL T LG+ T+ +
Sbjct: 64 EFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSSN 123
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 124 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 183
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + ++ + +LLF A K+ FPLHVW PDA
Sbjct: 184 EFRDLFEIF-----NNLINNNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEGP 237
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L + + + + IAF+G +T+++G
Sbjct: 238 TPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------IAFIGIITVLLGA 286
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL ++
Sbjct: 287 TLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGCGSV 343
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
I+ G + K GGL + +PFT T I LSL GIPPL F SK
Sbjct: 344 IHSMEAIVGYSPDKSQNMVLMGGLTKHVPFTKTSFLIGTLSLCGIPPLACFWSK 397
>gb|AAF08888.1|AF194857_1 (AF194857) NADH dehydrogenase [Portulacaria afra]
Length = 717
Score = 157 bits (393), Expect = 3e-37
Identities = 121/387 (31%), Positives = 194/387 (49%), Gaps = 39/387 (10%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTA--KDGYEWLFALMSL--TGALGIFTAQ 118
F+LG+++ L I SM+ V + ++ + GY FA MS T LG+ T+
Sbjct: 83 FELGYLIDPLTSIMSMLITTVAILVLIYSDNYMFHDQGYLRFFAYMSFFNTSMLGLVTSS 142
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGS
Sbjct: 143 NLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGS 202
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + ++ + +LLF A K+ FPLHVW PDA
Sbjct: 203 FEFRDLFEIF-----NNLINNNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEG 256
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVG 293
I + + AG+ F++ +L L + + + + IAF+G +T+++G
Sbjct: 257 PTPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------IAFIGIVTVLLG 305
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL +
Sbjct: 306 ATLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGS 362
Query: 354 LIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFE 404
+I+ G + K GGL + +P T T I LSL GIPPL F SK I +
Sbjct: 363 VIHSMEAIVGYSPDKSQNMVLMGGLRKHVPITKTAFLIGTLSLCGIPPLACFWSKDEILD 422
Query: 405 AVISQNLPILGGMVFFGSAIGFVYLIR 431
+ PI + +F + + Y+ R
Sbjct: 423 DSWLYS-PIFAIIAYFTAGLTAFYMFR 448
>gb|AAF23618.1| (AF188183) NADH dehydrogenase [Gratiola pilosa]
Length = 700
Score = 157 bits (393), Expect = 3e-37
Identities = 116/358 (32%), Positives = 180/358 (49%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+LG+++ L I SM+ VG+ ++ T GY FA MS T LG+ T+
Sbjct: 75 FELGYLIDPLTSIMSMLITTVGIMVLIYSDNYMTHDQGYLRFFAYMSFFSTSMLGLVTSS 134
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y TGS
Sbjct: 135 NLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWITGS 194
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ E V+ ++ S LLF A K+ FPLHVW PDA
Sbjct: 195 FEFRDLF-----EIVNNLISNNEVNSPFVTLCAALLFAGAVA-KSAQFPLHVWLPDAMEG 248
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AGV+ + L+I++ P +I+ LG +T+
Sbjct: 249 PTPISALIHAATMVAAGVFLVARLLPLFIVI--------------PYIMNLISLLGIITV 294
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL
Sbjct: 295 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLG 351
Query: 351 VATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I+ G + K GGL + +P T T F+ LSL GIPPL F SK
Sbjct: 352 SGSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTSFFLGTLSLCGIPPLACFWSK 409
>pir||S08621 probable hydrogenase 3 protein 3 - Escherichia coli
>gi|41682|emb|CAA35548.1| (X17506) hycC [Escherichia
coli] >gi|1093496|prf||2104213C hycC gene [Escherichia
coli]
Length = 608
Score = 157 bits (392), Expect = 5e-37
Identities = 129/498 (25%), Positives = 226/498 (44%), Gaps = 55/498 (11%)
Query: 13 LVAGFLAWLFNVKGIREG--IGVIGALIPLIGLIKLYPSLGQGVSYTITVGGFKLGFMMS 70
+ A LA+LF+ + G G+ GA+ L + L V + + +S
Sbjct: 15 VAAAVLAFLFSFQKALSGWIAGIGGAVGSLYTAAAGFTVLTGAVGVSGALSLVSYDVQIS 74
Query: 71 HLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFAL---MSLTGALGIFTAQDLVVFFIFW 127
LN I+ + + G+ L + + L M + A+ A +L +F +
Sbjct: 75 PLNAIWLITLGLCGLFVSLYNIDWHRHAQVKCNGLQINMLMAAAVCAVIASNLGMFVVMA 134
Query: 128 EIMTFASFMMVLKFNRAASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEA 187
EIM + + L N +F L +G + +A L++ + G+
Sbjct: 135 EIMALCA--VFLTSNSKEGKLWFALGRLGTLLLAIACWLLWQRYGTLDL---------RL 183
Query: 188 VSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLS 247
+ + P S I+LL ++ FG+ AG+ PLH W P A++ A+FS V+
Sbjct: 184 LDMRMQQLPLGSD-----IWLLGVIGFGLLAGIIPLHGWVPQAHANASTPAAALFSTVVM 238
Query: 248 KAGVYGFILLYILMYGKLLIDLGQVRSAPAF-GYVIAFLGGLTIIVGGILAALQEDIRRL 306
K G+ G + L +L +AP + G + LG +T VGG+ A ++ +I+RL
Sbjct: 239 KIGLLGILTLSLLG-----------GNAPLWWGIALLVLGMITAFVGGLYALVEHNIQRL 287
Query: 307 FAYSSISQVGYILVGLGIGTS-----------LGIEAAIYHAISHALFKGLFFLIVATLI 355
AY ++ +G IL+GLG G + LG+ +YH ++H+LFK + FL ++
Sbjct: 288 LAYHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVW 347
Query: 356 YRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQN----- 410
+RTG + + GG+ +KMP + ++++A +PPL GFA +W+I+++ +
Sbjct: 348 FRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAF 407
Query: 411 -LPILGGMVFFGSAIG---FVYLIRFTYAVWF--GQRPSDIEDTKDAPLPLAIGMAILGT 464
+LG ++ G AI V + Y V F R + E+ APL +++ + L
Sbjct: 408 VARLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAENATCAPLLMSVSVVALAI 467
Query: 465 LNVVFGVAPGIIAKELNA 482
V+ GVA + L+A
Sbjct: 468 CCVIGGVAAPWLLPMLSA 485
>gb|AAF08883.1|AF194852_1 (AF194852) NADH dehydrogenase [Pereskia aculeata]
Length = 693
Score = 157 bits (392), Expect = 5e-37
Identities = 120/386 (31%), Positives = 192/386 (49%), Gaps = 39/386 (10%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 64 EFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDRGYLRFFAYMSFFNTSMLGLVTSSN 123
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ FIFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 124 LIQIFIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 183
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + ++ + +LLF A K+ FPLHVW PDA
Sbjct: 184 EFRDLFEIF-----NNLINNNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEGP 237
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L + + + + I+F+G +T+++G
Sbjct: 238 TPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFIGIITVLLGA 286
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL ++
Sbjct: 287 TLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGSV 343
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K GGL + +P T T I LSL GIPPL F SK I A
Sbjct: 344 IHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNA 403
Query: 406 VISQNLPILGGMVFFGSAIGFVYLIR 431
+ PI + +F + + Y+ R
Sbjct: 404 SWLYS-PIFAKIAYFTAGLTAFYMFR 428
>gb|AAA69233.1| (U29579) formate hydrogenlyase subunit 3 [Escherichia coli]
Length = 608
Score = 157 bits (392), Expect = 5e-37
Identities = 128/497 (25%), Positives = 224/497 (44%), Gaps = 53/497 (10%)
Query: 13 LVAGFLAWLFNVKGIREG--IGVIGALIPLIGLIKLYPSLGQGVSYTITVGGFKLGFMMS 70
+ A LA+LF+ + G G+ GA+ L + L V + + +S
Sbjct: 15 VAAAVLAFLFSFQKALSGWIAGIGGAVGSLYTAAAGFTVLTGAVGVSGALSLVSYDVQIS 74
Query: 71 HLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFAL---MSLTGALGIFTAQDLVVFFIFW 127
LN I+ + + G+ L + + L M + A+ A +L +F +
Sbjct: 75 PLNAIWLITLGLCGLFVSLYNIDWHRHAQVKCNGLQINMLMAAAVCAVIASNLGMFVVMA 134
Query: 128 EIMTFASFMMVLKFNRAASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEA 187
EIM + + L N +F L +G + +A L++ + G+
Sbjct: 135 EIMALCA--VFLTSNSKEGKLWFALGRLGTLLLAIACWLLWQRYGTLDL---------RL 183
Query: 188 VSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLS 247
+ + P S I+LL ++ FG+ AG+ PLH W P A++ A+FS V+
Sbjct: 184 LDMRMQQLPLGSD-----IWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVVM 238
Query: 248 KAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLF 307
K G+ G + L +L L +G + LG +T VGG+ A ++ +I+RL
Sbjct: 239 KIGLLGILTLSLLGGNAXLW----------WGIALLVLGMITAFVGGLYALVEHNIQRLL 288
Query: 308 AYSSISQVGYILVGLGIGTS-----------LGIEAAIYHAISHALFKGLFFLIVATLIY 356
AY ++ +G IL+GLG G + LG+ +YH ++H+LFK + FL ++ +
Sbjct: 289 AYHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWF 348
Query: 357 RTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQN------ 410
RTG + + GG+ +KMP + ++++A +PPL GFA +W+I+++ +
Sbjct: 349 RTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFV 408
Query: 411 LPILGGMVFFGSAIG---FVYLIRFTYAVWF--GQRPSDIEDTKDAPLPLAIGMAILGTL 465
+LG ++ G AI V + Y V F R + E+ APL +++ + L
Sbjct: 409 ARLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAENATCAPLLMSVSVVALAIC 468
Query: 466 NVVFGVAPGIIAKELNA 482
V+ GVA + L+A
Sbjct: 469 CVIGGVAAPWLLPMLSA 485
>sp|P16429|HYCC_ECOLI FORMATE HYDROGENLYASE SUBUNIT 3 (FHL SUBUNIT 3) (HYDROGENASE-3
COMPONENT C) >gi|7446809|pir||G65052 hydrogenase (EC
1.18.99.1) 3 chain 3 - Escherichia coli
>gi|2367154|gb|AAC75765.1| (AE000356) membrane-spanning
protein of hydrogenase 3 (part of FHL complex)
[Escherichia coli K12]
Length = 608
Score = 157 bits (392), Expect = 5e-37
Identities = 129/498 (25%), Positives = 226/498 (44%), Gaps = 55/498 (11%)
Query: 13 LVAGFLAWLFNVKGIREG--IGVIGALIPLIGLIKLYPSLGQGVSYTITVGGFKLGFMMS 70
+ A LA+LF+ + G G+ GA+ L + L V + + +S
Sbjct: 15 VAAAVLAFLFSFQKALSGWIAGIGGAVGSLYTAAAGFTVLTGAVGVSGALSLVSYDVQIS 74
Query: 71 HLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFAL---MSLTGALGIFTAQDLVVFFIFW 127
LN I+ + + G+ L + + L M + A+ A +L +F +
Sbjct: 75 PLNAIWLITLGLCGLFVSLYNIDWHRHAQVKCNGLQINMLMAAAVCAVIASNLGMFVVMA 134
Query: 128 EIMTFASFMMVLKFNRAASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEA 187
EIM + + L N +F L +G + +A L++ + G+
Sbjct: 135 EIMALCA--VFLTSNSKEGKLWFALGRLGTLLLAIACWLLWQRYGTLDL---------RL 183
Query: 188 VSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLS 247
+ + P S I+LL ++ FG+ AG+ PLH W P A++ A+FS V+
Sbjct: 184 LDMRMQQLPLGSD-----IWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVVM 238
Query: 248 KAGVYGFILLYILMYGKLLIDLGQVRSAPAF-GYVIAFLGGLTIIVGGILAALQEDIRRL 306
K G+ G + L +L +AP + G + LG +T VGG+ A ++ +I+RL
Sbjct: 239 KIGLLGILTLSLLG-----------GNAPLWWGIALLVLGMITAFVGGLYALVEHNIQRL 287
Query: 307 FAYSSISQVGYILVGLGIGTS-----------LGIEAAIYHAISHALFKGLFFLIVATLI 355
AY ++ +G IL+GLG G + LG+ +YH ++H+LFK + FL ++
Sbjct: 288 LAYHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVW 347
Query: 356 YRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQN----- 410
+RTG + + GG+ +KMP + ++++A +PPL GFA +W+I+++ +
Sbjct: 348 FRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAF 407
Query: 411 -LPILGGMVFFGSAIG---FVYLIRFTYAVWF--GQRPSDIEDTKDAPLPLAIGMAILGT 464
+LG ++ G AI V + Y V F R + E+ APL +++ + L
Sbjct: 408 VARLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAENATCAPLLMSVSVVALAI 467
Query: 465 LNVVFGVAPGIIAKELNA 482
V+ GVA + L+A
Sbjct: 468 CCVIGGVAAPWLLPMLSA 485
>gb|AAF08885.1|AF194854_1 (AF194854) NADH dehydrogenase [Portulaca molokiniensis]
Length = 695
Score = 156 bits (391), Expect = 6e-37
Identities = 122/399 (30%), Positives = 200/399 (49%), Gaps = 46/399 (11%)
Query: 55 SYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--T 109
S+TIT + G+++ L I SM+ V + ++ + GY FA MS T
Sbjct: 54 SWTITNDFSLEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNT 113
Query: 110 GALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAI 164
LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I
Sbjct: 114 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 173
Query: 165 GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLH 224
IY TGSF F D+ F + ++ + +LLF A K+ FPLH
Sbjct: 174 LGIYWITGSFEFRDLFEIF-----NNLIKNNEIHLLFCILCTFLLFTGAVA-KSAQFPLH 227
Query: 225 VWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAF 284
VW PDA I + + AG+ F++ +L L + + + + I+F
Sbjct: 228 VWLPDAMEGPTPISALIHAATMVAAGI--FLVARLL---PLFVVVPYIMNG------ISF 276
Query: 285 LGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFK 344
+G +T+++G LA Q+DI+R AYS++SQ+GY+++ LGIG+ +AA++H I+HA K
Sbjct: 277 VGIITVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSK 333
Query: 345 GLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVG 395
L FL ++I+ G + K GGL + +P T T I LSL GIPPL
Sbjct: 334 ALLFLGSGSVIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLAC 393
Query: 396 FASKWLIFEAVISQN---LPILGGMVFFGSAIGFVYLIR 431
F SK + ++S + PI + +F + + Y+ R
Sbjct: 394 FWSK----DEILSDSWLYSPIFATIAYFTAGLTAFYMFR 428
>gb|AAF08895.1|AF194864_1 (AF194864) NADH dehydrogenase [Talinum patens]
Length = 694
Score = 156 bits (391), Expect = 6e-37
Identities = 118/390 (30%), Positives = 196/390 (50%), Gaps = 45/390 (11%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+++ L I SM+ V + ++ + GY FA MSL T LG+ T+
Sbjct: 64 FEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 123
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGS
Sbjct: 124 NLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGS 183
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + ++ + +LLF A K+ FPLHVW PDA
Sbjct: 184 FEFRDLFEIF-----NNLINNNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEG 237
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVG 293
I + + AG+ F++ +L L + + + + I+F+G +T+++G
Sbjct: 238 PTPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFIGIITVLLG 286
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL +
Sbjct: 287 ATLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGS 343
Query: 354 LIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFE 404
+I+ G + K GGL + +P T T I LSL G+PPL F SK +
Sbjct: 344 VIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGMPPLACFWSK----D 399
Query: 405 AVISQN---LPILGGMVFFGSAIGFVYLIR 431
+++ + PI + +F + + Y+ R
Sbjct: 400 EILNDSWLYSPIFAIIAYFTAGLTAFYMFR 429
>gb|AAF08898.1|AF194867_1 (AF194867) NADH dehydrogenase [Portulaca oleracea]
Length = 695
Score = 156 bits (391), Expect = 6e-37
Identities = 122/399 (30%), Positives = 200/399 (49%), Gaps = 46/399 (11%)
Query: 55 SYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--T 109
S+TIT + G+++ L I SM+ V + ++ + GY FA MS T
Sbjct: 54 SWTITNDFSLEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNT 113
Query: 110 GALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAI 164
LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I
Sbjct: 114 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 173
Query: 165 GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLH 224
IY TGSF F D+ F + ++ + +LLF A K+ FPLH
Sbjct: 174 LGIYWITGSFEFRDLFEIF-----NNLIKNNEIHLLFCILCTFLLFTGAVA-KSAQFPLH 227
Query: 225 VWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAF 284
VW PDA I + + AG+ F++ +L L + + + + I+F
Sbjct: 228 VWLPDAMEGPTPISALIHAATMVAAGI--FLVARLL---PLFVVVPYIMNG------ISF 276
Query: 285 LGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFK 344
+G +T+++G LA Q+DI+R AYS++SQ+GY+++ LGIG+ +AA++H I+HA K
Sbjct: 277 VGIITVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSK 333
Query: 345 GLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVG 395
L FL ++I+ G + K GGL + +P T T I LSL GIPPL
Sbjct: 334 ALLFLGSGSVIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLAC 393
Query: 396 FASKWLIFEAVISQN---LPILGGMVFFGSAIGFVYLIR 431
F SK + ++S + PI + +F + + Y+ R
Sbjct: 394 FWSK----DEILSDSWLYSPIFATIAYFTAGLTAFYMFR 428
>gb|AAF08897.1|AF194866_1 (AF194866) NADH dehydrogenase [Talinum angustissimum]
Length = 695
Score = 156 bits (391), Expect = 6e-37
Identities = 118/390 (30%), Positives = 194/390 (49%), Gaps = 43/390 (11%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+
Sbjct: 63 FEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSS 122
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGS
Sbjct: 123 NLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGS 182
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F ++ + +LLF A K+ FPLHVW PDA
Sbjct: 183 FEFRDLFEIFNN---LNLINSNEIHFVFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEG 238
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVG 293
I + + AG+ F++ +L L + + + + I+F+G +T+++G
Sbjct: 239 PTPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFIGIITVLLG 287
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL +
Sbjct: 288 ATLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGS 344
Query: 354 LIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFE 404
+I+ G + K GGL + +P T T I LSL GIPPL F SK +
Sbjct: 345 VIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSK----D 400
Query: 405 AVISQN---LPILGGMVFFGSAIGFVYLIR 431
+++ + PI + +F + + Y+ R
Sbjct: 401 EILNDSWLYSPIFATIAYFTAGLTAFYMFR 430
>gb|AAF08862.1|AF194830_1 (AF194830) NADH dehydrogenase [Talinum paniculatum]
Length = 713
Score = 156 bits (390), Expect = 8e-37
Identities = 118/390 (30%), Positives = 196/390 (50%), Gaps = 45/390 (11%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+++ L I SM+ V + ++ + GY FA MSL T LG+ T+
Sbjct: 83 FEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 142
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGS
Sbjct: 143 NLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGS 202
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + ++ + +LLF A K+ FPLHVW PDA
Sbjct: 203 FEFRDLFEIF-----NNLINNNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEG 256
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVG 293
I + + AG+ F++ +L L + + + + I+F+G +T+++G
Sbjct: 257 PTPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFIGIITVLLG 305
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL +
Sbjct: 306 ATLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGS 362
Query: 354 LIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFE 404
+I+ G + K GGL + +P T T I LSL G+PPL F SK +
Sbjct: 363 VIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGMPPLACFWSK----D 418
Query: 405 AVISQN---LPILGGMVFFGSAIGFVYLIR 431
+++ + PI + +F + + Y+ R
Sbjct: 419 EILNDSWLYSPIFAIIAYFTAGLTAFYMXR 448
>gb|AAF08853.1|AF194821_1 (AF194821) NADH dehydrogenase [Amaranthus palmeri]
Length = 687
Score = 156 bits (390), Expect = 8e-37
Identities = 118/396 (29%), Positives = 193/396 (47%), Gaps = 59/396 (14%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 64 EFGYLLDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 123
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I +Y TGSF
Sbjct: 124 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGSF 183
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + ++ S +LLF A K+ FPLHVW PDA
Sbjct: 184 EFRDLFEIF-----NNLINANQVNSLFCSLCAFLLFAGAVA-KSAQFPLHVWLPDAMEGP 237
Query: 235 DQSYTAIFSGVLSKAGVYG-------FILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGG 287
I + + AG++ FI++ +MYG I+F+G
Sbjct: 238 TPISALIHAATMVAAGIFLVARLLPLFIVIPYIMYG------------------ISFIGI 279
Query: 288 LTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLF 347
+T+++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L
Sbjct: 280 ITVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALL 336
Query: 348 FLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFAS 398
FL ++I+ G + K GGL + +P T I LSL GIPPL F S
Sbjct: 337 FLGSGSIIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKNAFLIGTLSLCGIPPLACFWS 396
Query: 399 KWLIFEAVISQNL---PILGGMVFFGSAIGFVYLIR 431
K + +++ +L PI + +F + + Y+ R
Sbjct: 397 K----DEILNDSLIYSPIFAIIAYFTAGLTAFYMFR 428
>gb|AAF37199.1| (AF191810) NADH dehydrogenase subunit F [Carex echinochloe]
Length = 695
Score = 156 bits (390), Expect = 8e-37
Identities = 117/387 (30%), Positives = 194/387 (49%), Gaps = 45/387 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ L I + VG++ ++ + Y FA ++L A LG+ T+ +
Sbjct: 72 EFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSYDQAYLRFFAYLNLFNASMLGLVTSSN 131
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWEI+ S++++ F R A K F+ + +G + +L+ I Y GSF
Sbjct: 132 LIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNXVGDFGLLLGILAFYWIIGSF 191
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ E ++++ S +LLF+ A K+ FPLH+W PDA
Sbjct: 192 EFRDLF-----EITNSLIKKNGVNSVFTTLCTFLLFVGAIA-KSAQFPLHIWLPDAMEGP 245
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AGV+ L ++ LLI P ++I+ +G +T+ +G
Sbjct: 246 TPISALIHAATMVAAGVF----LVARLFPLLLI-------TPNIMHIISSIGLITLFLGA 294
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q DI+R AYS++SQ+GYI++ LGIG+S AA++H I+HA K L FL ++
Sbjct: 295 TLALAQIDIKRSLAYSTMSQLGYIILALGIGSS---RAALFHLITHAYSKALLFLGSGSI 351
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + +K+ GGL + +P T T + LSL GIPPL F SK +
Sbjct: 352 IHSMEPVVGYSPYKNQXMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSK----DE 407
Query: 406 VISQN---LPILGGMVFFGSAIGFVYL 429
++S + PI G + +F + + Y+
Sbjct: 408 ILSNSWLYSPIFGIITYFTTGLTAXYM 434
>gb|AAG12233.1| (AF163467) NADH dehydrogenase subunit F [Uncinia phleoides]
Length = 702
Score = 156 bits (390), Expect = 8e-37
Identities = 120/392 (30%), Positives = 196/392 (49%), Gaps = 48/392 (12%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ L I + VG++ ++ + GY FA ++L A LG+ T+ +
Sbjct: 74 EFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSHDQGYLRFFAYLNLFNASMLGLVTSSN 133
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWEI+ S++++ F R A K F+ + +G + +L+ I Y GSF
Sbjct: 134 LIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGXFGLLLGILGFYWIIGSF 193
Query: 175 SFSDISAFFGKEAVSTML---GGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAY 231
F D+ E + ++ G F+ L +LLF+ A K+ FPLH+W PDA
Sbjct: 194 EFRDLF-----EITNNLIQKNGVNSLFTTLCTLCTFLLFVGAIA-KSAQFPLHIWLPDAM 247
Query: 232 SETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AGV+ L ++ LLI P ++I+ +G +T+
Sbjct: 248 EGPTPISALIHAATMVAAGVF----LVARLFPLLLI-------TPNIMHIISSIGLITLF 296
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI+R AYS++SQ+GYI++ LGIG+S A++H I+HA K L FL
Sbjct: 297 LGATLALAQIDIKRSLAYSTMSQLGYIILALGIGSS---RTALFHLITHAYSKALLFLGS 353
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K+ GGL + +P T T + LSL GIPPL F SK
Sbjct: 354 GSIIHSMEPVVGYSPCKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSK--- 410
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR 431
+ ++S + PI G + +F + + Y+ R
Sbjct: 411 -DEILSNSWLYSPIFGIITYFTTGLTAFYMFR 441
>gb|AAF08871.1|AF194840_1 (AF194840) NADH dehydrogenase [Calyptridium umbellatum]
Length = 693
Score = 155 bits (389), Expect = 1e-36
Identities = 118/391 (30%), Positives = 195/391 (49%), Gaps = 47/391 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+
Sbjct: 63 FEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSS 122
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGS
Sbjct: 123 NLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGS 182
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGV-KAGMFPLHVWAPDAYS 232
F F D+ F + + ++ FL A V K+ FPLHVW PDA
Sbjct: 183 FEFRDLFEIFNNLITNNEINFL-------FCILCTFFLFAGAVAKSAQFPLHVWLPDAME 235
Query: 233 ETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIV 292
I + + AG+ F++ +L L + + + + I+F+G +T+++
Sbjct: 236 GPTPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFIGIITLLL 284
Query: 293 GGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVA 352
G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 285 GATLALAQKDIKRSLAYSTMSQLGYMMLALGLGS---YRAALFHLITHAYSKALLFLGSG 341
Query: 353 TLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIF 403
++I+ G + K GGL + +PFT T I LSL GIPPL F SK
Sbjct: 342 SVIHSMEAIVGYSPDKSQNMVLMGGLTKHVPFTKTAFLIGTLSLCGIPPLACFWSK---- 397
Query: 404 EAVISQN---LPILGGMVFFGSAIGFVYLIR 431
+ +++ + PI + +F + + Y+ R
Sbjct: 398 DEILNDSWLYSPIFAIIAYFTAGLTAFYMFR 428
>gi|11466428 subunit 4 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
>gi|7259571|gb|AAF43872.1|AF166114_84 (AF166114) subunit
4 of NADH-plastoquinoneoxidoreductase [Mesostigma
viride]
Length = 507
Score = 155 bits (389), Expect = 1e-36
Identities = 123/461 (26%), Positives = 214/461 (45%), Gaps = 51/461 (11%)
Query: 5 LLAVIFSPLVAGFLAWLF------NVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYT- 57
+ +++ P++AG L NV+ GIG++ L LI I Y Q S
Sbjct: 7 ITSIVMLPILAGLLIPFIPDENGKNVRWYALGIGLLDFL--LISYIFGYKYNIQDTSLQL 64
Query: 58 ------ITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSL-TG 110
I+ F + L+ ++ + A+LG K+ + F ++++ +G
Sbjct: 65 IDDYEWISSINFHWRLGIDGLSIPLILLTGFITTLAMLGAWPIQKNAKLFYFLMLAMYSG 124
Query: 111 ALGIFTAQDLVVFFIFWEIMTFASFMMVL----KFNRAASLKYFLLSIMGAYAMLVAIGL 166
LG+F +QDL++FF+ WE+ +++++ K A+ K+ L + +G+ +L+A
Sbjct: 125 QLGVFASQDLLLFFLMWELELIPIYILLIIWGGKKRLYAATKFILYTALGSIFILIA--- 181
Query: 167 IYAKTGSFSFSDISAFFGKEAVSTM--LGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLH 224
+F AF+G+ M LG L++ L Y+ FL+A+ VK FP+H
Sbjct: 182 ------AFGM----AFYGENMSFDMQILGEKEYPINLEI-LFYICFLIAYAVKLPAFPVH 230
Query: 225 VWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAF 284
W PD + E S + +G+L K G Y I + + M I F +A
Sbjct: 231 TWLPDTHGEAHYSTCMLLAGILLKMGGYALIRINMNMLPNAHI---------YFAPYLAI 281
Query: 285 LGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFK 344
+G + II + + Q +I+R AYSSIS +G++L+G+ T +G+ A+ +SH L
Sbjct: 282 IGVINIIYAALTSFAQRNIKRKIAYSSISHMGFVLIGISSFTDIGLSGAMLQMVSHGLIG 341
Query: 345 GLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFE 404
F + T RT +D GG+A+ MP F M L+ +P + GF ++ ++F
Sbjct: 342 ASLFFLAGTTYDRTRTLILEDMGGIAKYMPKIFAMFTTCSLASLALPGMSGFVAELMVFL 401
Query: 405 AVISQNLPIL--GGMVFFGSAIGF----VYLIRFTYAVWFG 439
+ N + G++ F AIG +YL+ V++G
Sbjct: 402 GFANSNAYSIEFRGIITFLEAIGIIVTPIYLLSMLRQVFYG 442
>gb|AAF08864.1|AF194832_1 (AF194832) NADH dehydrogenase [Alluaudia humbertii]
Length = 714
Score = 155 bits (389), Expect = 1e-36
Identities = 117/358 (32%), Positives = 182/358 (50%), Gaps = 42/358 (11%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAK-----DGYEWLFALMSL--TGALGIF 115
F+ G+++ L I SM+ VG ILG++ + GY FA MS T LG+
Sbjct: 83 FEFGYLIDPLTSIMSMLITTVG---ILGLIYSDNYMSHDRGYLRFFAYMSFFNTSMLGLV 139
Query: 116 TAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAK 170
T+ +L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWI 199
Query: 171 TGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDA 230
TGSF F D+ F ++ + +LLF A K+ FPLHVW PDA
Sbjct: 200 TGSFEFRDLFEIFNN---LNLINNNEIHFIFCILCTFLLFAGAVA-KSAQFPLHVWLPDA 255
Query: 231 YSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG+ F++ +L L + + + + I+F+G +T+
Sbjct: 256 MEGPTPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFIGIITV 304
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL
Sbjct: 305 LLGATLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLG 361
Query: 351 VATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I+ G + K GGL + +P T T I LSL GIPPL F SK
Sbjct: 362 SGSVIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSK 419
>gb|AAF08893.1|AF194862_1 (AF194862) NADH dehydrogenase [Talinella cf. pachypoda]
Length = 693
Score = 155 bits (388), Expect = 1e-36
Identities = 120/389 (30%), Positives = 192/389 (48%), Gaps = 45/389 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 64 EFGYLIDPLTSIMSMLITTVAILVLIYSDKYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 123
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 124 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 183
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + ++ + +LLF A K+ FPLHVW PDA
Sbjct: 184 EFRDLFEIF-----NNLINQNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEGP 237
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG++ L L L+I P I+F+G +T+++G
Sbjct: 238 TPISALIHAATMVAAGIFLVARLLPLF---LVI--------PYIMNGISFIGIITVLLGA 286
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++GLGIG+ AA++H I+HA K L FL ++
Sbjct: 287 TLALAQKDIKRSLAYSTMSQLGYMMLGLGIGS---YRAALFHLITHAYSKALLFLGSGSV 343
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K GGL + +P T T I LSL GIPPL F SK +
Sbjct: 344 IHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSK----DE 399
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIR 431
+++ + PI + +F + + Y+ R
Sbjct: 400 ILNDSWLYSPIFAIIAYFTAGLTAFYMFR 428
>gb|AAF08894.1|AF194863_1 (AF194863) NADH dehydrogenase [Talinopsis frutescens]
Length = 694
Score = 155 bits (388), Expect = 1e-36
Identities = 119/389 (30%), Positives = 195/389 (49%), Gaps = 45/389 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 65 EFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 124
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 125 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWLTGSF 184
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + ++ + +LLF A K+ FPLHVW PDA
Sbjct: 185 EFRDLFEIF-----NNLINHNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEGP 238
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AGV F++ +L L + + + + I+F+G +T+++G
Sbjct: 239 TPISALIHAATMVAAGV--FLVARLL---PLFVVIPYIMNG------ISFIGIITVLLGA 287
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL ++
Sbjct: 288 TLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGSV 344
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K GGL + +P T T I LSL GIPPL F SK +
Sbjct: 345 IHSMEALVGYSPEKSQNMVIMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSK----DE 400
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIR 431
+++ + PI + +F +A+ Y+ R
Sbjct: 401 ILNDSWVYSPIFAIIAYFTAALTAFYMFR 429
>gb|AAF37200.1| (AF191811) NADH dehydrogenase subunit F [Carex humboldtiana]
Length = 702
Score = 155 bits (388), Expect = 1e-36
Identities = 118/397 (29%), Positives = 195/397 (48%), Gaps = 45/397 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ L I + VG++ ++ + Y FA ++L A LG+ T+ +
Sbjct: 77 EFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSYDQAYLRFFAYLNLFNASMLGLVTSSN 136
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWEI+ S++++ F R A K F+ + +G + +L+ I Y GSF
Sbjct: 137 LIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILAFYWIIGSF 196
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ E ++++ S +LLF+ A K+ FPLH+W PDA
Sbjct: 197 EFRDLF-----EITNSLIKKNGVNSVFTTLCTFLLFVGAIA-KSAQFPLHIWLPDAMEGP 250
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AGV+ L ++ LLI P ++I+ +G +T+ +G
Sbjct: 251 TPISALIHAATMVAAGVF----LVARLFPLLLI-------TPNIMHIISSIGLITLFLGA 299
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q DI+R AYS++SQ+GYI++ LGIG+S AA++H I+HA K L FL ++
Sbjct: 300 TLALAQIDIKRSLAYSTMSQLGYIILALGIGSS---RAALFHLITHAYSKALLFLGSGSI 356
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + +K+ GGL + +P T T + LSL GIPPL F SK +
Sbjct: 357 IHSMEPVVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSK----DE 412
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFG 439
++S PI G + +F + + Y+ + G
Sbjct: 413 ILSNXWLYSPIFGIITYFTTGLTAFYMFXXXXXXFXG 449
>gb|AAF08884.1|AF194853_1 (AF194853) NADH dehydrogenase [Portulaca grandiflora]
Length = 712
Score = 155 bits (387), Expect = 2e-36
Identities = 121/399 (30%), Positives = 200/399 (49%), Gaps = 46/399 (11%)
Query: 55 SYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--T 109
S+TIT + G+++ L I SM+ V + ++ + GY FA MS T
Sbjct: 74 SWTITNDFSLEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNT 133
Query: 110 GALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAI 164
LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I
Sbjct: 134 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 193
Query: 165 GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLH 224
IY TGSF F D+ F + ++ + +LLF A K+ FPLH
Sbjct: 194 LGIYWITGSFEFRDLFEIF-----NNLIKNNEIHFFFCILCTFLLFAGAVA-KSAQFPLH 247
Query: 225 VWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAF 284
VW PDA I + + AG+ F++ +L L + + + + I+F
Sbjct: 248 VWLPDAMEGPTPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISF 296
Query: 285 LGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFK 344
+G +T+++G LA Q+DI+R AYS++SQ+GY+++ LGIG+ +AA++H I+HA K
Sbjct: 297 IGIITVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSK 353
Query: 345 GLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVG 395
L FL ++I+ G + K GGL + +P T T I LSL GIPPL
Sbjct: 354 ALLFLGSGSVIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLAC 413
Query: 396 FASKWLIFEAVISQN---LPILGGMVFFGSAIGFVYLIR 431
F SK + +++ + PI + +F + + Y+ R
Sbjct: 414 FWSK----DEILNDSWLYSPIFAIIAYFTAGLTAFYMFR 448
>sp|Q55429|NU5C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >gi|7432381|pir||S75795
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5.2 -
Synechocystis sp. (strain PCC 6803)
>gi|1001283|dbj|BAA10530.1| (D64003) NADH dehydrogenase
subunit 5 [Synechocystis sp.]
Length = 681
Score = 155 bits (387), Expect = 2e-36
Identities = 129/451 (28%), Positives = 211/451 (46%), Gaps = 53/451 (11%)
Query: 31 IGVIGALIPLIGLIKLYPSLGQGVSYT-----ITVGGFKL--GFMMSHLNWIFSMIAAVV 83
I +GA + + G + L+ + SY + G F L G+++ HL+ + +I V
Sbjct: 45 ISCLGAALVMSGAL-LWDQIQGHASYAQMIEWASAGSFHLEMGYVIDHLSALMLVIVTSV 103
Query: 84 GVSAILGMVST----AKD-GYEWLFALMSL--TGALGIFTAQDLVVFFIFWEIMTFASFM 136
A+L M+ T A D GY +A +SL + LG+ + +LV +IFWE++ S++
Sbjct: 104 ---ALLVMIYTDGYMAHDPGYVRFYAYLSLFASSMLGLVISPNLVQVYIFWELVGMCSYL 160
Query: 137 MV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTM 191
++ ++R A+ K F+ + +G + +L+ I +Y TGSF F I S +
Sbjct: 161 LIGFWYDRKAAADACQKAFVTNRVGDFGLLLGILGLYWATGSFDFGTIGERLEGLVSSGV 220
Query: 192 LGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGV 251
L G A A++ +L L K+ FPLHVW PDA I + + AGV
Sbjct: 221 LSGAIA------AILAILVFLGPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGV 274
Query: 252 YGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSS 311
+ +Y + P IAF G T +G +A Q DI++ AYS+
Sbjct: 275 FLVARMYPVF-----------EPIPVVMNTIAFTGCFTAFLGATIALTQNDIKKGLAYST 323
Query: 312 ISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYRTG---------KTE 362
ISQ+GY+++ +GIG A ++H ++HA FK + FL ++I+ +
Sbjct: 324 ISQLGYMVMAMGIG---AYSAGLFHLMTHAYFKAMLFLCSGSVIHGMEGVVGHDPILAQD 380
Query: 363 FKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPILGGMVFFGS 422
+ GGL + MP T T I L++ GIPP GF SK I N P+L + + +
Sbjct: 381 MRIMGGLRKYMPITATCFLIGTLAICGIPPFAGFWSKDEILGLAFQAN-PLLWFVGWATA 439
Query: 423 AIGFVYLIRFTYAVWFGQRPSDIEDTKDAPL 453
+ Y+ R + + G + ++ KD L
Sbjct: 440 GMTAFYMFRMYFMTFEGGFRGNDQEAKDGVL 470
>gb|AAF08873.1|AF194842_1 (AF194842) NADH dehydrogenase [Cistanthe grandiflora]
Length = 713
Score = 154 bits (386), Expect = 2e-36
Identities = 113/354 (31%), Positives = 180/354 (49%), Gaps = 38/354 (10%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 84 EFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 143
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 144 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 203
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + ++ + +LLF A K+ FPLHVW PDA
Sbjct: 204 EFRDLFEIF-----NNLINNNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEGP 257
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L + + + + I+F+G +T+++G
Sbjct: 258 TPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFIGIITVLLGA 306
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL ++
Sbjct: 307 TLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGSV 363
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
I+ G + K GGL + +PFT T I LSL GIPPL F SK
Sbjct: 364 IHSMEAIVGYSPDKSQNMVLMGGLTKHVPFTKTAFLIGTLSLCGIPPLACFWSK 417
>gb|AAF03769.1| (AF147711) NADH dehydrogenase subunit [Exacum affine]
Length = 521
Score = 154 bits (386), Expect = 2e-36
Identities = 116/395 (29%), Positives = 190/395 (47%), Gaps = 45/395 (11%)
Query: 66 GFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQDLV 121
G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +L+
Sbjct: 78 GYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLVTSSNLI 137
Query: 122 VFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSF 176
+IFWE++ S++++ F R A K F+ + +G + +L+ I Y TGSF F
Sbjct: 138 QIYIFWELVGLCSYLLIGFWFTRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSFEF 197
Query: 177 SDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQ 236
D+ F + + + L V L +L K+ FPLHVW PDA
Sbjct: 198 RDLFEIFNNLIYNNEV------NFLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGPTP 251
Query: 237 SYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGIL 296
I + + AG++ L L R P Y+I+ +G +T+ +G L
Sbjct: 252 ISALIHAATMVAAGIFLVARLLPLF-----------RVIPYIMYLISVIGIITVXLGATL 300
Query: 297 AALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIY 356
A Q+DI+R AYS++SQ+GY+++ LG+G+ A++H I+HA K L FL ++I+
Sbjct: 301 ALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRNALFHLITHAYSKALLFLGSGSIIH 357
Query: 357 R----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVI 407
G + +K+ GGL + +P T T F+ LSL+GIPPL F SK E ++
Sbjct: 358 SMERLVGYSPYKNQNMVLMGGLGKHIPITKTSFFLGTLSLSGIPPLACFWSK----EEIL 413
Query: 408 SQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFG 439
+ PI + + + + Y+ R + + G
Sbjct: 414 KDSWFYSPIFAIIAWSTAGLXXFYMFRIYFLTFEG 448
>gb|AAF08183.1| (AF130227) NADH dehydrogenase subunit F [Acer negundo]
Length = 744
Score = 154 bits (386), Expect = 2e-36
Identities = 116/401 (28%), Positives = 193/401 (47%), Gaps = 51/401 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAILGMVS--TAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G + L I S++ VG+ + + + GY FA MS T LG+ T+
Sbjct: 74 FEFGHFIDPLTSIMSILITTVGILVLFYSHNYMSHDQGYLRFFAYMSFFNTSMLGLVTSS 133
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I +Y TGS
Sbjct: 134 NLIQIYIFWELVGMCSYLLIGFWFTRPSAASACQKAFVTNRVGDFGLLLGILGLYWTTGS 193
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFG---VKAGMFPLHVWAPDA 230
F F D+ F + +++ + L L FG K+ FPLHVW PDA
Sbjct: 194 FEFRDLFEIFNNLIYN---------KEVNFLFVTLCAFLLFGGAVAKSAQFPLHVWLPDA 244
Query: 231 YSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ L L + P +I+F+G +T+
Sbjct: 245 MEGPTPISALIHAATMVAAGIFLVARLLPLFI-----------AIPYIMNLISFIGIITV 293
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 294 LLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLG 350
Query: 351 VATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWL 401
++I+ G +K GGL + +P T T + LSL GIPPL F SK
Sbjct: 351 SGSIIHSMEALVGYAPYKSQNMALMGGLRKHVPITKTAFLLGTLSLCGIPPLACFWSK-- 408
Query: 402 IFEAVISQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFG 439
+ +++ + PI + F + + Y+ R + + G
Sbjct: 409 --DEILNDSWLYSPIFAIIASFTAGLTAFYMFRIYFLTFEG 447
>gb|AAF08874.1|AF194843_1 (AF194843) NADH dehydrogenase [Cistanthe mucronulata]
Length = 692
Score = 154 bits (386), Expect = 2e-36
Identities = 113/354 (31%), Positives = 180/354 (49%), Gaps = 38/354 (10%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 63 EFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 122
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 123 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 182
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + ++ + +LLF A K+ FPLHVW PDA
Sbjct: 183 EFRDLFEIF-----NNLINNNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEGP 236
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L + + + + I+F+G +T+++G
Sbjct: 237 TPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFIGIITVLLGA 285
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL ++
Sbjct: 286 TLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGSV 342
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
I+ G + K GGL + +PFT T I LSL GIPPL F SK
Sbjct: 343 IHSMEAIVGYSPDKSQNMVLMGGLTKHVPFTKTAFLIGTLSLCGIPPLACFWSK 396
>gb|AAF90041.2| (AF238055) NADH dehydrogenase subunit F [Hydrastis canadensis]
Length = 410
Score = 154 bits (386), Expect = 2e-36
Identities = 113/352 (32%), Positives = 176/352 (49%), Gaps = 38/352 (10%)
Query: 66 GFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQDLV 121
G+++ L I S++ VG+ ++ + GY FA MS A LG+ T+ +L+
Sbjct: 57 GYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQGYLQFFAYMSFFNASMLGLVTSSNLI 116
Query: 122 VFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSF 176
+IFWE++ S++++ F R +A K F+ + +G + + + I +Y TGSF F
Sbjct: 117 QIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLFLGILGLYWITGSFEF 176
Query: 177 SDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQ 236
D+ E V+ ++ A S LLF+ A K+ FPLHVW PDA
Sbjct: 177 RDLF-----EIVNDLIDNNGANSLFLTLCASLLFVGAIA-KSAQFPLHVWLPDAMEGPTP 230
Query: 237 SYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGIL 296
I + + AG++ L L + P Y+I+ +G +TI++G L
Sbjct: 231 ISALIHAATMVAAGIFLVARLLPLF-----------TTIPYIMYIISLVGIITILLGATL 279
Query: 297 AALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLI- 355
A Q DI+R AYS++SQ+GYI++ LG+G+ AA++H I+HA K L FL ++I
Sbjct: 280 ALAQRDIKRSLAYSTMSQLGYIMLALGMGS---YRAALFHLITHAYSKALLFLGSGSIIH 336
Query: 356 -------YRTGKTE-FKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
Y K++ GGL + +P T T + LSL GIPPL F SK
Sbjct: 337 SMETIVGYSPDKSQNMALMGGLTKYVPITKTAFLLGTLSLCGIPPLACFWSK 388
>gb|AAF08870.1|AF194839_1 (AF194839) NADH dehydrogenase [Calyptrotheca somalensis]
Length = 662
Score = 154 bits (386), Expect = 2e-36
Identities = 113/355 (31%), Positives = 179/355 (49%), Gaps = 36/355 (10%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+
Sbjct: 26 FEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSS 85
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGS
Sbjct: 86 NLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWVTGS 145
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F ++ + +LLF A K+ FPLHVW PDA
Sbjct: 146 FEFRDLFEIFNN---LNLINNNDIHFLFCILCAFLLFAGAVA-KSAQFPLHVWLPDAMEG 201
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVG 293
I + + AG+ F++ +L L + + + + I+F+G +T+++G
Sbjct: 202 PTPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFIGIITVLLG 250
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL +
Sbjct: 251 ATLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGS 307
Query: 354 LIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
+I+ G + K GGL + +P T T I LSL GIPPL F SK
Sbjct: 308 VIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSK 362
>pir||E69033 NADH dehydrogenase I, subunit N - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622358|gb|AAB85735.1| (AE000891) NADH dehydrogenase
I, subunit N [Methanobacterium thermoautotrophicum]
Length = 498
Score = 154 bits (385), Expect = 3e-36
Identities = 130/525 (24%), Positives = 230/525 (43%), Gaps = 63/525 (12%)
Query: 1 MNELLLAVIFSPLVAGFLAWLFN-----VKGIREGIGVIGALIPLIGLIKLYPSLGQGVS 55
MN L+ ++ P++ L L + VK + + ++ +IPL+ G GV
Sbjct: 1 MNPLIPVMVVLPILCALLLNLLHGRDRTVKALAVAVAILLPIIPLLA--------GYGVH 52
Query: 56 Y-----------TITVG---GFKLGFMMSH----------LNWIFSMIAAVVGVSAILGM 91
Y TI G K ++ S IF +I ++V A+L
Sbjct: 53 YFGGYAPLSENSTIAAGLPASIKSSYLYSFHPAITYVFGSAQRIFLLILSLVTFLAVLTS 112
Query: 92 VSTAK--DGYEWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVL----KFNRAA 145
++ + G M I D+ ++F+EI A +VL + N
Sbjct: 113 LNEVRRPSGVYAFLMFMGTAAVTAIVLTDDIFNLYVFFEIAALAQVGVVLCSGVERNYET 172
Query: 146 SLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVAL 205
+LKY ++ + +L+ +G++ A TG+ + SDI V+ G+P F +A
Sbjct: 173 ALKYMMIGGVAVPMLLLGVGILLALTGNVNISDIVYSMRSGLVNP---GSPLFL---LAS 226
Query: 206 IYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKL 265
L+F +G G+ P H YS+ +A+ L V+ F L I++
Sbjct: 227 ALLIFGWLYGT--GLPPFHTIKSAIYSKALPHGSAL----LQAFSVFTFTALAIVI---- 276
Query: 266 LIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIG 325
L P +V+ F +++G +A +Q D+RR+ + ++ ++GYI +GLG+G
Sbjct: 277 ---LRMFYHVPLVRWVMVFFSLAGMVLGISMALMQTDLRRMIGFLAVGELGYIGIGLGLG 333
Query: 326 TSLGIEAAIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAIL 385
T+ I A ++ A++ AL FL T+ Y TGKT+ + GGL P + ++
Sbjct: 334 TAASISAGLFQAVNEALITACIFLGFGTIFYMTGKTDPEAMGGLLAYKPGLAGLVMLSGF 393
Query: 386 SLAGIPPLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDI 445
+AG+PP F SK + +A I +P LG ++ S + F+ +R Y+V+ P +
Sbjct: 394 IMAGVPPFNVFQSKLRLIQAAIQAGVPELGILMILLSIVTFMTFMRAFYSVYLKPEPRGM 453
Query: 446 E-DTKDAPLPLAIGMAILGTLNVVFGVAPGIIAKELNAIFGRTVI 489
E +++ P M +L + V G+AP + + A+ +I
Sbjct: 454 ELESRSVPRSTVFSMVVLIIICTVLGIAPWLATSQFTALIQGLII 498
>gb|AAF08886.1|AF194855_1 (AF194855) NADH dehydrogenase [Portulaca mundula]
Length = 695
Score = 154 bits (385), Expect = 3e-36
Identities = 122/404 (30%), Positives = 201/404 (49%), Gaps = 56/404 (13%)
Query: 55 SYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--T 109
S+TIT + G+++ L I SM+ V + ++ + GY FA MS T
Sbjct: 54 SWTITNDFSLEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNT 113
Query: 110 GALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAI 164
LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I
Sbjct: 114 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGI 173
Query: 165 GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLL---FLLAFGV--KAG 219
IY TGSF F D+ F K ++ ++ + FLL G K+
Sbjct: 174 LGIYWITGSFEFRDLFEIFNN-----------LIKKNEIDFLFCILCTFLLFAGAVAKSA 222
Query: 220 MFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFG 279
FPLHVW PDA I + + AG+ F++ +L L + + + +
Sbjct: 223 QFPLHVWLPDAMEGPTPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG---- 273
Query: 280 YVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAIS 339
I+F+G +T+++G LA Q+DI+R AYS++SQ+GY+++ LGIG+ +AA++H I+
Sbjct: 274 --ISFIGIITVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLIT 328
Query: 340 HALFKGLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGI 390
HA K L FL ++I+ G + K GGL + +P T T I LSL GI
Sbjct: 329 HAYSKALLFLGSGSVIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGI 388
Query: 391 PPLVGFASKWLIFEAVISQN---LPILGGMVFFGSAIGFVYLIR 431
PPL F SK + +++ + PI + +F + + Y+ R
Sbjct: 389 PPLACFWSK----DEILNDSWLYSPIFAIIAYFTAGLTAFYMFR 428
>gb|AAG12238.1| (AF163472) NADH dehydrogenase subunit F [Dulichium arundinaceum]
Length = 665
Score = 154 bits (385), Expect = 3e-36
Identities = 116/384 (30%), Positives = 188/384 (48%), Gaps = 39/384 (10%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ L I S++ VG++ ++ + GY FA ++L A LG+ T+ +
Sbjct: 40 EFGYLIDSLASIMSVLITTVGITVLIYSDNYMSHDQGYLRFFAYLNLXNASMLGLVTSSN 99
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWEI+ S++++ F R A K + + +G + +L+ I Y GSF
Sbjct: 100 LIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAXVXNCVGDFGLLLGILGFYWIIGSF 159
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ E + ++ S +LLF+ A K+ FPLH+W PDA
Sbjct: 160 EFRDLF-----EITNNLIQKNGVNSLFTTLCTFLLFVGAVA-KSAQFPLHIWLPDAMEGP 213
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AGV+ L+ L P ++I+ +G +T+ +G
Sbjct: 214 TPISALIHAATMVAAGVFLIARLFPLFL-----------ITPYIMHIISSIGLITLFLGA 262
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GYI++ LGIG+S AA++H I+HA K L FL ++
Sbjct: 263 TLALAQKDIKRSLAYSTMSQLGYIILALGIGSS---RAALFHLITHAYSKALLFLGSGSI 319
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K+ GGL + +P T T + LSL GIPPL F SK I
Sbjct: 320 IHSMEPVVGYSPDKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSKXEILSN 379
Query: 406 VISQNLPILGGMVFFGSAIGFVYL 429
+ PI G + F + + Y+
Sbjct: 380 SWXHS-PIFGXIXXFTAGLTAFYM 402
>gb|AAF08856.1|AF194824_1 (AF194824) NADH dehydrogenase [Aptenia cordifolia]
Length = 690
Score = 154 bits (385), Expect = 3e-36
Identities = 117/392 (29%), Positives = 188/392 (47%), Gaps = 49/392 (12%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I M+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 63 EFGYLIDSLTSIMLMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 122
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 123 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 182
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F S + L L L K+ FPLHVW PDA
Sbjct: 183 EFGDLFEIFN----SLIKNNNNETHFLFCILCTFLLFAGAVAKSAQFPLHVWLPDAMEGP 238
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AG++ + L+I++ P YVI+F+G +T++
Sbjct: 239 TPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMYVISFIGIITVL 284
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 285 LGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLGS 341
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T I LSL GIPPL F SK
Sbjct: 342 GSIIHSMETIVGYSPEKSQNMVLMGGLTRHVPITKTAFLIGTLSLCGIPPLACFWSK--- 398
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR 431
+ +++ + PI + +F + + Y+ R
Sbjct: 399 -DEILNDSWLYSPIFAIIAYFTAGLTAFYMFR 429
>sp|P29925|NQOD_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 13 (NADH DEHYDROGENASE 1,
CHAIN 13) (NDH-1, CHAIN 13) >gi|478255|pir||I45456 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Paracoccus denitrificans >gi|150615|gb|AAA25599.1|
(L02354) NADH dehydrogenase [Paracoccus denitrificans]
Length = 513
Score = 153 bits (384), Expect = 4e-36
Identities = 117/432 (27%), Positives = 194/432 (44%), Gaps = 46/432 (10%)
Query: 1 MNELLLAVIFSPLVAGFLAWLF----------NVKGIREGIGVIGALIPLIGLIKLYPSL 50
M LL + F P+VA + LF N K + +I L L + P+
Sbjct: 1 MTNLLSIITFLPIVAAIIMALFLRGQDEAAARNAKWLALLTTTATFVISLFVLFRFDPAN 60
Query: 51 G-----------QGVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGY 99
GV Y + V G + F+ L F M ++ + V
Sbjct: 61 TGFQFVEDHAWIMGVCYKMGVDGISVLFV---LLTTFMMPLTILSTWQVQDKVK------ 111
Query: 100 EWLFALMSLTGAL-GIFTAQDLVVFFIFWEIMTFASFMMVL----KFNRAASLKYFLLSI 154
E++ A + L G + G+FTA DLV+F++F+E F+++ K AS K+FL +
Sbjct: 112 EYMIAFLVLEGLMIGVFTALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTF 171
Query: 155 MGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAF 214
+G+ MLVA+ +Y G+ + F +LG T L++L F +F
Sbjct: 172 LGSVLMLVAMIAMYRMAGTTDIPTLLTFDFPSENFRLLGMTVVGGMQ--MLLFLAFFASF 229
Query: 215 GVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRS 274
VK M+P+H W PDA+ + + + + + VL K G YGF+ + M+ V S
Sbjct: 230 AVKMPMWPVHTWLPDAHVQAPTAGSVLLAAVLLKMGGYGFLRFSLPMF--------PVAS 281
Query: 275 APAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAI 334
A YV +L + I+ ++A Q D++++ AYSS++ +GY+ +G+ +G++ AI
Sbjct: 282 GVAQPYVF-WLSAIAIVYTSLVALAQSDMKKVIAYSSVAHMGYVTMGVFAANQIGVDGAI 340
Query: 335 YHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLV 394
+ +SH G FL V + R E +GGL +MP + ++ G+P
Sbjct: 341 FQMLSHGFISGALFLCVGVIYDRMHTREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTS 400
Query: 395 GFASKWLIFEAV 406
GF ++L V
Sbjct: 401 GFVGEFLTLMGV 412
>gb|AAF19430.1|AF206713_1 (AF206713) NADH dehydrogenase subunit F [Talinum triangulare]
Length = 663
Score = 153 bits (383), Expect = 5e-36
Identities = 118/389 (30%), Positives = 194/389 (49%), Gaps = 45/389 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 34 EFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 93
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 94 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 153
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F K ++ + +LLF A K+ FPLHVW PDA
Sbjct: 154 EFRDLFEIFNK-----LINKNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEGP 207
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L + + + + I+F+G +T+++G
Sbjct: 208 TPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFIGIITLLLGA 256
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL ++
Sbjct: 257 TLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGSV 313
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K GGL + +P T T I LSL GIPPL F SK +
Sbjct: 314 IHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSK----DE 369
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIR 431
+++ + PI + +F + + Y+ R
Sbjct: 370 ILNDSWLYSPIFAIISYFTAGLTAFYMFR 398
>gb|AAF08876.1|AF194845_1 (AF194845) NADH dehydrogenase [Didierea trollii]
Length = 696
Score = 153 bits (383), Expect = 5e-36
Identities = 113/355 (31%), Positives = 180/355 (49%), Gaps = 36/355 (10%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+
Sbjct: 62 FEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDRGYLRFFAYMSFFNTSMLGLVTSS 121
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGS
Sbjct: 122 NLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGS 181
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F ++ + +LLF A K+ FPLHVW PDA
Sbjct: 182 FEFRDLFEIFNN---LNLINNNEIHFIFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEG 237
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVG 293
I + + AG+ F++ +L L + + + + I+F+G +T+++G
Sbjct: 238 PTPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFIGIITVLLG 286
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL +
Sbjct: 287 ATLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGS 343
Query: 354 LIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
+I+ G + K+ GGL + +P T T I LSL GIPPL F SK
Sbjct: 344 VIHSMEAIVGYSPDKNQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSK 398
>pir||S75961 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4.1b -
Synechocystis sp. (strain PCC 6803)
>gi|1001321|dbj|BAA10808.1| (D64006) NADH dehydrogenase
subunit 4 [Synechocystis sp.]
Length = 507
Score = 153 bits (383), Expect = 5e-36
Identities = 107/445 (24%), Positives = 205/445 (46%), Gaps = 42/445 (9%)
Query: 39 PLIGLIKLYPSLGQ-GVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKD 97
P + ++ YP L G++Y + V G L ++ + +A+V ++ +
Sbjct: 55 PQMQFVEYYPWLPSLGLNYHLGVDGLSLPLLLLN--------SALVVIAIFSTNTEIERP 106
Query: 98 GYEWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA----ASLKYFLLS 153
+ + L+ G G F AQDL++FF+F+E+ + ++ + A++K+ L +
Sbjct: 107 RFYYALLLLLSGGVAGAFLAQDLLLFFLFFELEIIPLYFLIAIWGGQRRGYAAMKFLLYT 166
Query: 154 IMGAYAMLVA-IGLIY-AKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFL 211
+ + +LV+ +G + K +F ++ ++ P +++ L+ L L
Sbjct: 167 ALSGFLVLVSFLGWFWLTKAPNFDYNP-----------SLADALPVKTQM---LLLLPLL 212
Query: 212 LAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQ 271
L G+K +FP H W PDA+ E + + +GVL K G YG + + +Y + ++
Sbjct: 213 LGLGIKIPIFPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGLGLYLEAWVE--- 269
Query: 272 VRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIE 331
F +A L ++ + G A Q+D++++ AYSSI+ +GYIL+ T L +
Sbjct: 270 ------FAPYLATLAAISALYGASCAIAQKDMKKVVAYSSIAHMGYILLAAAAATRLSVT 323
Query: 332 AAIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGL---AEKMPFTFTMAFIAILSLA 388
AA +SH + L FL+V + +TG + GL +P T ++ + +++ A
Sbjct: 324 AASAQMVSHGIISALLFLLVGVVYKKTGSRDVDKLQGLLTPERGLPITGSLMILGVMASA 383
Query: 389 GIPPLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDT 448
GIP +VGF +++L+F P + GS + VY + V+FG+ ++
Sbjct: 384 GIPGMVGFIAEFLVFRGSF-PIFPTQTLLCLIGSGLTAVYFLLMINRVFFGRLTMELSHL 442
Query: 449 KDAPLPLAIGMAILGTLNVVFGVAP 473
I L + + G+ P
Sbjct: 443 PKVRWQEQIPAIALAVVIIALGIQP 467
>gb|AAF08890.1|AF194859_1 (AF194859) NADH dehydrogenase [Talinum caffrum]
Length = 693
Score = 153 bits (383), Expect = 5e-36
Identities = 118/390 (30%), Positives = 191/390 (48%), Gaps = 43/390 (11%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+
Sbjct: 61 FEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSS 120
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGS
Sbjct: 121 NLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGS 180
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + L + L L L K+ FPLHVW PDA
Sbjct: 181 FEFRDLFEIFN----NLNLNNSNEIHFLFCILCTFLLFAGAVAKSAQFPLHVWLPDAMEG 236
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVG 293
I + + AG+ F++ +L L + + + + I+FLG +T+++G
Sbjct: 237 PTPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFLGIITVLLG 285
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL +
Sbjct: 286 ATLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGS 342
Query: 354 LIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFE 404
+I+ G + K GGL + +P T I LSL GIPPL F SK +
Sbjct: 343 VIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKIAFLIGTLSLCGIPPLACFWSK----D 398
Query: 405 AVISQN---LPILGGMVFFGSAIGFVYLIR 431
+++ + PI + +F + + Y+ R
Sbjct: 399 EILNDSWVYSPIFAIIAYFTAGLTAFYMFR 428
>gb|AAG12210.1| (AF163444) NADH dehydrogenase subunit F [Carex mertensii]
Length = 711
Score = 153 bits (383), Expect = 5e-36
Identities = 116/387 (29%), Positives = 192/387 (48%), Gaps = 45/387 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ L I + VG++ ++ + Y FA ++L A LG+ T+ +
Sbjct: 86 EFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSHDQAYLRFFAYLNLFNASMLGLVTSSN 145
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWEI+ S++++ F R A K + + +G + +L+ I Y GSF
Sbjct: 146 LIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAXVTNRVGDFGLLLGILAFYWIIGSF 205
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ E + ++ S +LLF+ A K+ FPLH+W PDA
Sbjct: 206 EFRDLF-----EITNNLIQKNGVNSLFTTLCTFLLFVGAIA-KSAQFPLHIWLPDAMEGP 259
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AGV+ L ++ LLI P ++I+ +G +T+ +G
Sbjct: 260 TPISALIHAATMVAAGVF----LVARLFPLLLI-------TPNIMHIISLIGLITLFLGA 308
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q DI+R AYS++SQ+GYI++ LGIG+S AA++H I+HA K L FL ++
Sbjct: 309 TLALAQLDIKRSLAYSTMSQLGYIILALGIGSS---RAALFHLITHAYSKALLFLGSGSI 365
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + +K+ GGL + +P T T + LSL GIPPL F SK +
Sbjct: 366 IHSMEPVVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSK----DX 421
Query: 406 VISQN---LPILGGMVFFGSAIGFVYL 429
++S + PI G + +F + + Y+
Sbjct: 422 ILSNSWLYSPIFGIITYFTTGLTAFYM 448
>emb|CAB65459.1| (AJ236276) NADH dehydrogenase subunit F [Sabia swinhoei]
Length = 697
Score = 153 bits (383), Expect = 5e-36
Identities = 117/389 (30%), Positives = 192/389 (49%), Gaps = 45/389 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ + GY FA MS T LG+ T+ +
Sbjct: 78 EFGYLIDPLTSIMSILITTVGLMVLVYSDNYMSHDQGYLRFFAYMSFSNTSMLGLVTSSN 137
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I +Y TGSF
Sbjct: 138 LIXIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGSF 197
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F ST G + L V L L + K+ FPLH+W PDA
Sbjct: 198 EFQDLFELFNN---STYNNGV---NSLFVTLCASLLFVGAVAKSAQFPLHIWLPDAMEGP 251
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L ++ P YVI+ +G +TI +G
Sbjct: 252 TPISALIHAATMVAAGI--FLVARLLPLFTVI---------PYIMYVISMIGIITIPLGA 300
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFL----I 350
LA Q+DI+R AYS+ Q+GY+++ LG+G+ AA++H I+HA K L FL I
Sbjct: 301 TLALAQKDIKRGLAYSTXXQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLGSGSI 357
Query: 351 VATLIYRTGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
+ ++ G + +K GGL + +P T T + LSL GIPPL F SK +
Sbjct: 358 INSMENIVGYSPYKSQNMVLMGGLTKYVPITKTSFLLGTLSLCGIPPLACFWSK----DK 413
Query: 406 VISQNL---PILGGMVFFGSAIGFVYLIR 431
+++ +L PI + + + + Y+ R
Sbjct: 414 ILNDSLLYSPIFAIIAWLTAGLTAFYMFR 442
>gb|AAF08860.1|AF194828_1 (AF194828) NADH dehydrogenase [Phytolacca acinosa]
Length = 713
Score = 153 bits (382), Expect = 7e-36
Identities = 119/394 (30%), Positives = 192/394 (48%), Gaps = 55/394 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 84 EFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 143
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I +Y TGSF
Sbjct: 144 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGSF 203
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYL----LFLLAFGV-KAGMFPLHVWAPD 229
F D+ F +K ++ ++ LFL A V K+ FPLHVW PD
Sbjct: 204 EFGDLFEIFNN-----------LINKNEIHFLFCILCTLFLFAGPVAKSAQFPLHVWLPD 252
Query: 230 AYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLG 286
A I + + AG++ + L+I++ P VI+F+G
Sbjct: 253 AMEGPTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNVISFIG 298
Query: 287 GLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGL 346
+T+++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L
Sbjct: 299 IITVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKAL 355
Query: 347 FFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFA 397
FL ++I+ G + K GGL +P T T I LSL GIPPL F
Sbjct: 356 LFLGSGSIIHSMEAIVGYSPDKSQNMVLMGGLTRHVPITRTSFLIGTLSLCGIPPLACFW 415
Query: 398 SKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIR 431
SK I + + PI + +F + + Y+ R
Sbjct: 416 SKDEILNDSWAYS-PIFAIIAYFTAGLTAFYMFR 448
>pir||S74687 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4.2 -
Synechocystis sp. (strain PCC 6803)
>gi|1651912|dbj|BAA16838.1| (D90901) NADH dehydrogenase
subunit 4 [Synechocystis sp.]
Length = 559
Score = 153 bits (382), Expect = 7e-36
Identities = 113/412 (27%), Positives = 192/412 (46%), Gaps = 50/412 (12%)
Query: 55 SYTITVGGFKLGFMMSH-----LNWIFSMIAAVVGVSAILGMVSTAKDGYEW-------- 101
+Y I+ GF+L S L+W S+ + + + G+V+T W
Sbjct: 55 NYDISSTGFQLQEKFSWIPQFGLSWSVSVDGISMPLVLLAGLVTTLSIFAAWQVDHKPRL 114
Query: 102 -LFALMSLTGA-LGIFTAQDLVVFFIFWEIMTFASFMMVLKFN----RAASLKYFLLSIM 155
F ++ L A +G+F AQD+++ FI WE+ +++V + + A++K+ L
Sbjct: 115 FYFLMLVLYAAQIGVFVAQDMLLLFIMWELELVPVYLLVCIWGGQKRQYAAMKFLL---- 170
Query: 156 GAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFG 215
Y ++ ++ A G + D++ F + L P +L +Y L+AFG
Sbjct: 171 --YTAAASVFILVAALGLAFYGDVTTF---DIAELGLKDYPIALEL---FLYAGLLIAFG 222
Query: 216 VKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSA 275
VK +FP H W PDA+ E + I +GVL K G YG I L +LG + A
Sbjct: 223 VKLAIFPFHTWLPDAHGEASAPVSMILAGVLLKMGGYGLIRL----------NLGLLEDA 272
Query: 276 PA-FGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAI 334
F ++ LG + II GG + Q++++R AYSS+S +G++L+G+ T LGI A+
Sbjct: 273 HVYFAPILVILGVVNIIYGGFSSFAQDNMKRRLAYSSVSHMGFVLLGIASFTDLGISGAM 332
Query: 335 YHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLV 394
+SH L + F + RT G + + MP F + + ++ +P +
Sbjct: 333 LQMLSHGLIAAVLFFLAGVTYDRTHTLSLAQMGNIGKVMPTVFALFTMGAMASLALPGMS 392
Query: 395 GFASKWLIFEAVISQNL---PILGGMVFFGSAIGFV----YLIRFTYAVWFG 439
GF S+ +F V S ++ P VF +A+G V YL+ +++G
Sbjct: 393 GFVSELAVFVGVSSSDIYSTPFKTVTVFL-AAVGLVLTPIYLLSMLRQLFYG 443
>gb|AAD52732.1|AF123674_1 (AF123674) NADH dehydrogenase [Amphianthus pusillus]
Length = 700
Score = 153 bits (382), Expect = 7e-36
Identities = 115/358 (32%), Positives = 179/358 (49%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+LG+++ L I SM+ VG+ ++ T GY FA MS T LG+ T+
Sbjct: 75 FELGYLIDPLTSIMSMLITTVGIMVLIYSDNYMTHDQGYLRFFAYMSFFSTSMLGLVTSS 134
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y TGS
Sbjct: 135 NLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWITGS 194
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ E V+ ++ S LLF A K+ FPL VW PDA
Sbjct: 195 FEFRDLF-----EIVNNLIYNNEVNSPFVTLCAALLFAGAVA-KSAQFPLXVWLPDAMEG 248
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P I+ LG +T+
Sbjct: 249 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNFISLLGIITV 294
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL
Sbjct: 295 LLGATLALAQKDIKRGLAYSTMSQLGYMMLSLGMGS---YRSALFHLITHAYSKALLFLG 351
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T T F+ LSL GIPPL F SK
Sbjct: 352 SGSVIHSMETIVGYSPDKSQNMVFMGGLTKHVPITKTSFFLGTLSLCGIPPLACFWSK 409
>gb|AAF08875.1|AF194844_1 (AF194844) NADH dehydrogenase [Decarya madagascariensis]
Length = 696
Score = 153 bits (382), Expect = 7e-36
Identities = 113/355 (31%), Positives = 179/355 (49%), Gaps = 36/355 (10%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+
Sbjct: 62 FEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDRGYLRFFAYMSFFNTSMLGLVTSS 121
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGS
Sbjct: 122 NLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGS 181
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F ++ + +LLF A K+ FPLHVW PDA
Sbjct: 182 FEFRDLFEIFNN---LNLINNNEIHFIFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEG 237
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVG 293
I + + AG+ F++ +L L + + + + I+F+G +T+++G
Sbjct: 238 PTPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFIGIITVLLG 286
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL +
Sbjct: 287 ATLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGS 343
Query: 354 LIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
+I+ G + K GGL + +P T T I LSL GIPPL F SK
Sbjct: 344 VIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSK 398
>gb|AAF08166.1| (AF130210) NADH dehydrogenase subunit F [Impatiens biflora]
Length = 739
Score = 152 bits (381), Expect = 9e-36
Identities = 111/358 (31%), Positives = 176/358 (49%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + GY FA MS T LG+ T
Sbjct: 74 FEFGYFIDPLTSIMSILITSVGILVLIYSDNYMSHDQGYLRFFAYMSFFSTSMLGLVTGS 133
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y TGS
Sbjct: 134 NLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGS 193
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFG---VKAGMFPLHVWAPDA 230
F F D+ F ++ +++DV L+ L +L F K+ FPLHVW PDA
Sbjct: 194 FEFQDLFEIFNNLILN---------NEVDVLLVILCAVLLFAGAVAKSAQFPLHVWLPDA 244
Query: 231 YSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ L L + P +I+ +G +T+
Sbjct: 245 MEGPTPISALIHAATMVAAGIFLVARLLPLFI-----------TIPYIMNLISLVGIITV 293
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
+G LA Q+DI+R AYS++SQ+GY+++ LG+G+ A++H I+HA K L FL
Sbjct: 294 FLGATLALAQKDIKRGLAYSTMSQLGYMMLTLGMGS---YRTALFHLITHAYSKALLFLA 350
Query: 351 VATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I+ G + K GGLA+ +P T F+ LSL GIPPL F SK
Sbjct: 351 SGSVIHSMEAIVGYSPDKSQNMVLMGGLAKHVPITKNAFFLGTLSLCGIPPLACFWSK 408
>gb|AAF08878.1|AF194847_1 (AF194847) NADH dehydrogenase [Lewisia pygmaea]
Length = 715
Score = 152 bits (381), Expect = 9e-36
Identities = 112/357 (31%), Positives = 178/357 (49%), Gaps = 44/357 (12%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ + GY FA MS T LG+ T+ +
Sbjct: 84 EFGYLIDPLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 143
Query: 120 LVVFFIFWEIMTFASFMMV-----LKFNRAASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ A K F+ + +G + +L+ I IY TGSF
Sbjct: 144 LIQIYIFWELVGMCSYLLIGFWITRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 203
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFG---VKAGMFPLHVWAPDAY 231
F D+ F + +++D L LL F K+ FPLHVW PDA
Sbjct: 204 EFRDVFEIFNNLINN---------NEIDFRFCILCTLLLFSGTVAKSAQFPLHVWLPDAM 254
Query: 232 SETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AG+ F++ +L L + + + + IAF+G +T++
Sbjct: 255 EGPTPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------IAFIGIITVL 303
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL
Sbjct: 304 LGATLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGS 360
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I+ G + K GGL + +P T T I LSL GIPPL F SK
Sbjct: 361 GSIIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSK 417
>gb|AAG12236.1| (AF163470) NADH dehydrogenase subunit F [Eriophorum chamissonis]
Length = 696
Score = 152 bits (381), Expect = 9e-36
Identities = 115/389 (29%), Positives = 192/389 (48%), Gaps = 45/389 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ L I S + +G++ ++ + Y FA ++L A LG+ T+ +
Sbjct: 85 EFGYLIDSLTSIMSALITTIGITVLIYSDNYMSHDQAYLRFFAYLNLFNASMLGLVTSSN 144
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWEI+ S++++ F R A K F+ +++G + +L+ Y GSF
Sbjct: 145 LIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNLVGXFGLLLGXLGFYWIIGSF 204
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ E + ++ S +LLFL A K+ FPLH+W PDA
Sbjct: 205 XFRDLF-----EITNNLIQKNGVNSLFTTLCTFLLFLGAIA-KSAQFPLHIWLPDAMEGP 258
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AGV+ L ++ LI P ++I+ +G +T+ +G
Sbjct: 259 TPISALIHAATMVAAGVF----LVARLFPLFLI-------TPYIMHIISSIGLITLFLGA 307
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GYI++ LGIG+S AA++H I+HA K L FL ++
Sbjct: 308 TLALAQKDIKRSLAYSTMSQLGYIILALGIGSS---RAALFHLITHAYSKALLFLGSGSI 364
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K+ GGL + +P T + LSL GIPPL F SK +
Sbjct: 365 IHSMEPVVGYSPDKNQNMVLMGGLTKYIPITRIAFLLGTLSLCGIPPLACFWSK----DE 420
Query: 406 VISQ---NLPILGGMVFFGSAIGFVYLIR 431
++S + PI G + + + + Y+ R
Sbjct: 421 ILSNSWLHSPIFGIIAYLTTGLTAFYMFR 449
>gb|AAF27223.1|AF111743_1 (AF111743) NADH dehydrogenase [Eriolaena spectabilis]
Length = 702
Score = 152 bits (381), Expect = 9e-36
Identities = 111/358 (31%), Positives = 178/358 (49%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + GY FA MSL T LG+ T+
Sbjct: 83 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 142
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 143 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 202
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + + L V L L K+ FPLHVW PDA
Sbjct: 203 FEFQDLFEIFNNLIYNNEV------NFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 256
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 257 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 302
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 303 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLG 359
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T T + LSL GIPPL F SK
Sbjct: 360 SGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQTAFLVGTLSLCGIPPLACFWSK 417
>gb|AAG26159.1| (AF123811) NADH dehydrogenase subunit F [Saururus cernuus]
Length = 429
Score = 152 bits (381), Expect = 9e-36
Identities = 111/354 (31%), Positives = 171/354 (47%), Gaps = 38/354 (10%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ L I ++ VG+ ++ + GY FA MS A LG+ T+ +
Sbjct: 74 EFGYLIDSLTSIMPILITTVGIMVLIYSDNYMSHDQGYLRFFAYMSFFNASMLGLVTSSN 133
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I +Y TGSF
Sbjct: 134 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGSF 193
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F T L A + L L L K+ FPLHVW PDA
Sbjct: 194 EFRDLFEIF------TSLVHNNAINSFFAILCASLLFLGAVAKSAQFPLHVWLPDAMEGP 247
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG++ L+ L + P +I+ +G +T+++G
Sbjct: 248 TPISALIHAATMVAAGIFLVARLFPLFI-----------TLPYIMNLISLIGVITVLLGA 296
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q DI+R AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL ++
Sbjct: 297 TLALAQRDIKRSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGSGSI 353
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
I+ G + K GGL + +P T T LSL GIPPL F SK
Sbjct: 354 IHSMEPVVGYSPEKSQNMVLMGGLTKYVPITKTTFLFGTLSLCGIPPLACFWSK 407
>gb|AAG12218.1| (AF163452) NADH dehydrogenase subunit F [Carex parva]
Length = 662
Score = 152 bits (380), Expect = 1e-35
Identities = 116/387 (29%), Positives = 192/387 (48%), Gaps = 45/387 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ L I + VG++ ++ + Y FA ++L A LG+ T+ +
Sbjct: 69 EFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSHDQAYLRFFAYLNLFNASMLGLVTSSN 128
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWEI+ S++++ F R A K F+ + +G + +L+ I Y GSF
Sbjct: 129 LIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWIIGSF 188
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ E + ++ S +LLF+ A K+ FPLH+W PDA
Sbjct: 189 EFRDLF-----EITNNLIQKNGINSLFTTLCTFLLFVGAIA-KSAQFPLHIWLPDAMEGP 242
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AGV+ L ++ LLI P ++I+ +G +T+ +G
Sbjct: 243 TPISALIHAATMVAAGVF----LVARLFPLLLI-------TPNIMHIISSIGLITLFLGA 291
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GYI++ LGIG+S A++H I+HA K L FL ++
Sbjct: 292 TLALAQKDIKRSLAYSTMSQLGYIILALGIGSS---RTALFHLITHAYSKALLFLGSGSI 348
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K+ GGL + +P T T + LSL GIPPL F SK +
Sbjct: 349 IHSMEPVVGYSPCKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSK----DE 404
Query: 406 VISQN---LPILGGMVFFGSAIGFVYL 429
++S + PI G + +F + + Y+
Sbjct: 405 ILSNSWLYSPIFGTITYFTTGLTAFYM 431
>pir||B75102 NADH dehydrogenase (ubiquinone) chain 4 related PAB0806 -
Pyrococcus abyssi (strain Orsay)
>gi|5458631|emb|CAB50119.1| (AJ248286) NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4 related (EC 1.6.5.3) [Pyrococcus
abyssi]
Length = 479
Score = 152 bits (380), Expect = 1e-35
Identities = 140/499 (28%), Positives = 237/499 (47%), Gaps = 96/499 (19%)
Query: 1 MNELLLAVIFSPLVAGFLAWLFNVKGIR---------------EGIGVIGALIPLIGLIK 45
MN +++ + SP++ L ++F I + + ++G +P++
Sbjct: 1 MNAVIMVI--SPVIFSLLIYIFGTFRIEGTFRARFRLPLTYEVKALYLLGVFLPML---- 54
Query: 46 LYPSLGQGVSYTITVGGF--KLGFMMSHLNWIFS--MIAA--VVGVSAILGMVSTAKDGY 99
L+P GV VGG+ ++G + L+W+ S +IA V G S++ +V +
Sbjct: 55 LFPLSRGGV-----VGGYPREIGIEVG-LDWVSSTFLIAEFLVFGASSLY-LVKRVTNWK 107
Query: 100 EWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRAASLKYFLLSIMGAYA 159
E L+ +G +G F ++D F++F E+ +S+ ++ +R A+ KY LLS+ +Y
Sbjct: 108 ELSLLLLMHSGLIGAFISKDYFNFYVFMELSAVSSYALIASQDREAAFKYLLLSMTASYV 167
Query: 160 MLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAG 219
+++A+G+IY +TG + E S + G + L +A I L+ +KAG
Sbjct: 168 LILALGMIYFQTG---------YLNVELASEV--GLRDDTPLRLAAISLI------LKAG 210
Query: 220 MFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFG 279
+FPLHVW PDA+S ++I SG+ KA +YG I LL +LG + F
Sbjct: 211 IFPLHVWLPDAHSNAKTYVSSILSGIAVKAPIYGLI---------LLSNLGDLSFLKPFA 261
Query: 280 YVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAIS 339
L++ G I+A LQ + +RL AY ++SQ+GYIL+GL G G A ++++
Sbjct: 262 I-------LSMAFGVIMAILQFNAKRLLAYHTVSQMGYILLGLSTGNVYG---ATLYSLA 311
Query: 340 HALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLA--GIPPLVGFA 397
HA+FKG FL V +I + + K G + IAILSLA G+ +G
Sbjct: 312 HAMFKGGLFLGVGAIIDARKRKDLKYLGSRN-----ILLIVSIAILSLAISGLGITIGGV 366
Query: 398 SKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVW--FGQRPSDIEDTKDAPLPL 455
+K + ++ + V FG+A F + Y +W +G P++
Sbjct: 367 AK-----SYLATTEKAIIYAVSFGTAFSF---SKLNYYLWKGYGNEPTNFS--------- 409
Query: 456 AIGMAILGTLNVVFGVAPG 474
+ LG L V+ G+ G
Sbjct: 410 ILPSLTLGVLTVLVGIELG 428
>gb|AAF08137.1| (AF130181) NADH dehydrogenase subunit F [Nymphoides indica]
Length = 745
Score = 152 bits (380), Expect = 1e-35
Identities = 119/394 (30%), Positives = 193/394 (48%), Gaps = 39/394 (9%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ + DGY FA MS T LG+ T+ +
Sbjct: 84 EFGYLIDPLTSIMSILITTVGILVLIYSDNYMSHDDGYLRFFAYMSFFSTSMLGLVTSSN 143
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGSF 174
LV +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGSF
Sbjct: 144 LVQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRVGDFGLLLGILGFYWITGSF 203
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F L T + L + L +L K+ FPLHVW PDA
Sbjct: 204 EFRDLFQIFNN------LISTNQVNFLFITLCAVLLFAGAIAKSAQFPLHVWLPDAMEGP 257
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L I + + + I+ +G LT+ +G
Sbjct: 258 TPISALIHAATMVAAGI--FLVARLL---PLFIVIPHIMN------FISLIGILTVFLGA 306
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LG+G+ A++H I+HA K L FL ++
Sbjct: 307 TLALAQQDIKRGLAYSTMSQLGYMMLALGMGS---YRNALFHLITHAYSKALLFLGSGSV 363
Query: 355 I--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I Y K++ F GGL + +P T + LSL GIPPL F SK I
Sbjct: 364 IHSMETVVGYSPNKSQNMVFMGGLTKYVPITKISFLLGTLSLCGIPPLACFWSKDEILND 423
Query: 406 VISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFG 439
+ PI+ + +F + + Y+ R + + G
Sbjct: 424 TWLYS-PIVAIIAWFTAGLTAFYMFRIYFLTFEG 456
>gb|AAF08867.1|AF194836_1 (AF194836) NADH dehydrogenase [Calandrinia compressa]
Length = 682
Score = 152 bits (380), Expect = 1e-35
Identities = 111/354 (31%), Positives = 178/354 (49%), Gaps = 38/354 (10%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 53 EFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 112
Query: 120 LVVFFIFWEIMTFASFMMV-----LKFNRAASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ A K F+ + +G + +L+ I IY TGSF
Sbjct: 113 LIQIYIFWELVGMCSYLLIGFWVTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 172
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F T++ + +LLF A K+ FPLHVW PDA
Sbjct: 173 EFRDLFEIF-----HTLINNNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEGP 226
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L + + + + I+F+G +T+++G
Sbjct: 227 TPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFIGIITVLLGA 275
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL ++
Sbjct: 276 TLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGSV 332
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
I+ G + K GGL + +P T T I+ LSL GIPPL F SK
Sbjct: 333 IHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLISTLSLCGIPPLACFWSK 386
>gb|AAG12213.1| (AF163447) NADH dehydrogenase subunit F [Carex elynoides]
Length = 688
Score = 152 bits (380), Expect = 1e-35
Identities = 117/387 (30%), Positives = 191/387 (49%), Gaps = 45/387 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ L I + VG++ ++ + Y FA ++L A LG+ T+ +
Sbjct: 72 EFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSHDQAYLRFFAYLNLFNASMLGLVTSSN 131
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWEI+ S++++ F R A K F+ + +G + +L+ I Y GSF
Sbjct: 132 LIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWIIGSF 191
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ E + ++ S +LLF+ A K+ FPLH+W PDA
Sbjct: 192 EFRDLF-----EITNNLIQKNGVNSLFTTLCTFLLFVGAIA-KSAQFPLHIWLPDAMEGP 245
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AGV+ L ++ LLI P Y+I+ +G +T+ +G
Sbjct: 246 TPVSALIHAATMVAAGVF----LVARLFPLLLI-------TPNIMYIISSIGLITLFLGA 294
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q DI+R AYS++SQ+GYI++ LGIG+S A++H I+HA K L FL ++
Sbjct: 295 TLALAQIDIKRSLAYSTMSQLGYIILALGIGSS---RTALFHLITHAYSKALLFLGSGSI 351
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K+ GGL + +P T T + LSL GIPPL F SK +
Sbjct: 352 IHSMEPVVGYSPCKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSK----DE 407
Query: 406 VISQN---LPILGGMVFFGSAIGFVYL 429
++S + PI G + +F + + Y+
Sbjct: 408 ILSNSWLYSPIFGIITYFTTGLTAFYM 434
>gb|AAG12215.1| (AF163449) NADH dehydrogenase subunit F [Carex leptalea]
Length = 700
Score = 152 bits (380), Expect = 1e-35
Identities = 118/390 (30%), Positives = 195/390 (49%), Gaps = 48/390 (12%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ L I + VG++ ++ + Y FA ++L A LG+ T+ +
Sbjct: 74 EFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSHDQAYLRFFAYLNLFNASMLGLVTSSN 133
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWEI+ S++++ F R A K F+ + +G + +L+ I Y GSF
Sbjct: 134 LIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWIIGSF 193
Query: 175 SFSDISAFFGKEAVSTML---GGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAY 231
F D+ E + ++ G F+ L +LLF+ A K+ FPLH+W PDA
Sbjct: 194 EFRDLF-----EITNNLIQKNGVNSLFTTLCTLCTFLLFVGAIA-KSAQFPLHIWLPDAM 247
Query: 232 SETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AGV+ L ++ LLI P ++I+ +G +T++
Sbjct: 248 EGPTPISALIHAATMVAAGVF----LVARLFPLLLI-------TPNIMHIISSIGLITLL 296
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI+R AYS++SQ+GYI++ LGIG+S A++H I+HA K L FL
Sbjct: 297 LGATLALAQVDIKRSLAYSTMSQLGYIILALGIGSS---RTALFHLITHAYSKALLFLGS 353
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K+ GGL + +P T T + LSL GIPPL F SK
Sbjct: 354 GSIIHSMEPVVGYSPCKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSK--- 410
Query: 403 FEAVISQ---NLPILGGMVFFGSAIGFVYL 429
+ ++S + PI G + +F + + Y+
Sbjct: 411 -DEILSNSWLHSPIFGIITYFTTGLTAFYM 439
>gb|AAF08877.1|AF194846_1 (AF194846) NADH dehydrogenase [Grahamia bracteata]
Length = 688
Score = 152 bits (379), Expect = 2e-35
Identities = 117/389 (30%), Positives = 193/389 (49%), Gaps = 45/389 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 59 EFGYLIDPLTSIMSMLITTVALLVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 118
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ FIFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 119 LIQIFIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 178
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + ++ + +LLF + K+ FPLHVW PDA
Sbjct: 179 EFRDLFEIF-----NNLINHNEIHFLFCILCTFLLFAGSVA-KSAQFPLHVWLPDAMEGP 232
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L + + + + I+F+G +T+++G
Sbjct: 233 TPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFIGIITLLLGA 281
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL ++
Sbjct: 282 TLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGSI 338
Query: 355 I--------YRTGKTE-FKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I Y K++ GGL + +P T T I LSL GIPPL F SK +
Sbjct: 339 IHSMEAIVGYSPDKSQNMVIMGGLTKHVPITKTSFLIGTLSLCGIPPLACFWSK----DE 394
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIR 431
+++ + PI + +F + + Y+ R
Sbjct: 395 ILNDSWLYSPIFAIIAYFTAGLTAFYMFR 423
>gb|AAF27197.1|AF111716_1 (AF111716) NADH dehydrogenase [Abutilon hybridum]
Length = 702
Score = 152 bits (379), Expect = 2e-35
Identities = 114/367 (31%), Positives = 181/367 (49%), Gaps = 45/367 (12%)
Query: 55 SYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--T 109
S+TI G F+ G+ + L I S++ VG+ ++ + GY FA MSL T
Sbjct: 74 SWTINNGFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNT 133
Query: 110 GALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAI 164
LG+ T+ +L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I
Sbjct: 134 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLXI 193
Query: 165 GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLH 224
Y TGSF F D+ F + + L V L L K+ FPLH
Sbjct: 194 LGFYWITGSFEFQDLFEIFNNLIYNNEV------PFLFVTLCASLLFTGAVAKSAQFPLH 247
Query: 225 VWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYV 281
VW PDA I + + AG++ + L+I++ P +
Sbjct: 248 VWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNL 293
Query: 282 IAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHA 341
I+ +G +T+++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA
Sbjct: 294 ISLIGIITVLLGATLAIAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHA 350
Query: 342 LFKGLFFLIVATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPP 392
K L FL ++I Y K++ F GGL + +P T + LSL GIPP
Sbjct: 351 YSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPP 410
Query: 393 LVGFASK 399
L F SK
Sbjct: 411 LACFWSK 417
>gb|AAF27211.1|AF111731_1 (AF111731) NADH dehydrogenase [Ceiba rosea]
Length = 702
Score = 152 bits (379), Expect = 2e-35
Identities = 111/358 (31%), Positives = 177/358 (49%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + GY FA MSL T LG+ T+
Sbjct: 83 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 142
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 143 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 202
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F S + L V L L K+ FPLHVW PDA
Sbjct: 203 FEFQDLFEIFNNLIYSNEV------PFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 256
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P+ +I+ +G +T+
Sbjct: 257 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PSIMNLISLIGIITV 302
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 303 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLG 359
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 360 SGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSK 417
>gb|AAF27215.1|AF111735_1 (AF111735) NADH dehydrogenase [Scleronema micranthum]
Length = 687
Score = 152 bits (379), Expect = 2e-35
Identities = 112/355 (31%), Positives = 176/355 (49%), Gaps = 38/355 (10%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ M L I S++ VG+ ++ + GY FA MSL T LG+ T
Sbjct: 85 FEFGYFMDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYXRFFAYMSLFNTSMLGLVTXS 144
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 145 NLIQIYIFWELVGLCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 204
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L K+ FPLHVW PDA
Sbjct: 205 FEFQDLFEIFNNLIYNNEV------HFLFVTFCASLLFAGAVAKSAQFPLHVWLPDAMEG 258
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVG 293
I + + AG+ F++ +L L I + +R+ +I+ +G +T+++G
Sbjct: 259 PTPISALIHAATMVAAGI--FLVARLL---PLFIVIPYIRN------LISLIGIITVLLG 307
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL +
Sbjct: 308 ATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLGSGS 364
Query: 354 LI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
+I Y K + F GGL + +P T + LSL GIPPL F SK
Sbjct: 365 IIHSMEAIVGYSPDKNQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSK 419
>gb|AAF27224.1|AF111744_1 (AF111744) NADH dehydrogenase [Heritiera littoralis]
Length = 707
Score = 152 bits (379), Expect = 2e-35
Identities = 119/369 (32%), Positives = 185/369 (49%), Gaps = 49/369 (13%)
Query: 55 SYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--T 109
S+TIT F+ G+++ L I S++ VG+ ++ + GY FA MSL T
Sbjct: 74 SWTITNDFSFEFGYLIDSLTSILSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNT 133
Query: 110 GALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAI 164
LG+ T+ +L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I
Sbjct: 134 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGI 193
Query: 165 GLIYAKTGSFSFSDISAFFG-----KEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAG 219
Y TGSF F D+ F KEA L V L L K+
Sbjct: 194 LGFYWITGSFEFQDLFELFNNLIYHKEA-----------HFLFVTLCASLLFAGAVAKSA 242
Query: 220 MFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFG 279
FPLHVW PDA I + + AG+ F++ +L L I L + +
Sbjct: 243 QFPLHVWLPDAMEGPTPISALIHAATMVAAGI--FLVARLL---PLFIVLPYIMN----- 292
Query: 280 YVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAIS 339
+I+ +G +T+++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+
Sbjct: 293 -LISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLIT 348
Query: 340 HALFKGLFFLIVATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGI 390
HA K L FL ++I Y K++ F GGL + +P T + LSL GI
Sbjct: 349 HAYSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGI 408
Query: 391 PPLVGFASK 399
PPL F SK
Sbjct: 409 PPLACFWSK 417
>pir||T13248 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gossypium
raimondii chloroplast (fragment)
>gi|1654256|gb|AAB17751.1| (U55335) Gossypium raimondii
NADH dehydrogenase
Length = 688
Score = 152 bits (379), Expect = 2e-35
Identities = 110/358 (30%), Positives = 178/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + +GY FA MSL T LG+ T+
Sbjct: 71 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDEGYLRFFAYMSLFNTSMLGLVTSS 130
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 131 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 190
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + + L V L L K+ FPLHVW PDA
Sbjct: 191 FEFQDLFEIFNNLIYNNEV------NFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 244
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 245 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 290
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 291 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLA 347
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 348 SGSIIHSMEAIVGYSPEKSQNMVFMGGLRKHVPITKIAFLVGTLSLCGIPPLACFWSK 405
>gb|AAF44116.1| (AF230257) NADH dehydrogenase [Kostermansia malayana]
Length = 707
Score = 152 bits (379), Expect = 2e-35
Identities = 115/369 (31%), Positives = 181/369 (48%), Gaps = 45/369 (12%)
Query: 53 GVSYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL- 108
G S+TI F+ G+ + L I S+ VG+ ++ + GY FA MSL
Sbjct: 72 GWSWTINNDFSFEFGYFIDSLTSIMSIXITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLF 131
Query: 109 -TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLV 162
T LG+ T+ +L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+
Sbjct: 132 NTSMLGLVTSSNLIXIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLL 191
Query: 163 AIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFP 222
I Y TGSF F D+ F + + L V L L K+ FP
Sbjct: 192 GILGFYWITGSFEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFP 245
Query: 223 LHVWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFG 279
LHVW PDA I + + AG++ + L+I++ P+
Sbjct: 246 LHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PSIM 291
Query: 280 YVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAIS 339
+I+ +G +T+++G LA Q+DI+R AYS++SQ+GY++V LG+G+ AA++H I+
Sbjct: 292 NLISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMVALGMGS---YRAALFHLIT 348
Query: 340 HALFKGLFFLIVATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGI 390
HA K L FL ++I Y K++ F GGL + +P T + LSL GI
Sbjct: 349 HAYSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGI 408
Query: 391 PPLVGFASK 399
PPL F SK
Sbjct: 409 PPLACFWSK 417
>gb|AAG12214.1| (AF163448) NADH dehydrogenase subunit F [Carex hakkodensis]
Length = 633
Score = 152 bits (379), Expect = 2e-35
Identities = 122/398 (30%), Positives = 199/398 (49%), Gaps = 56/398 (14%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ L I + VG++ ++ + Y FA ++L A LG+ T+ +
Sbjct: 12 EFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSHDQAYLRFFAYLNLFNASMLGLVTSSN 71
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWEI+ S++++ F R A K F+ + +G + +L+ I Y GSF
Sbjct: 72 LIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWIIGSF 131
Query: 175 SFSDISAFFGKEAVSTML---GGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAY 231
F D+ E + ++ G P F+ L +LLF+ A K+ FPLH+W PDA
Sbjct: 132 EFRDLF-----EITNNLIHKNGVNPLFTTL---CTFLLFVGAIA-KSAQFPLHIWLPDAM 182
Query: 232 SETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AGV+ L ++ LLI P ++I+ +G +T+
Sbjct: 183 EGPTPVSALIHAATMVAAGVF----LVARLFPLLLI-------TPNIMHIISSIGLITLF 231
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI+R AYS++SQ+GYI++ LGIG+S A++H I+HA K L FL
Sbjct: 232 LGATLALAQIDIKRSLAYSTMSQLGYIILALGIGSS---RTALFHLITHAYSKALLFLGS 288
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + +K+ GGL + +P T T + LSL GIPPL F SK
Sbjct: 289 GSIIHSMEPVVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSK--- 345
Query: 403 FEAVISQN---LPILGGMVFFGSAIG-----FVYLIRF 432
+ ++S + PI G + +F + + VYL+ F
Sbjct: 346 -DEILSNSWLYSPIFGIITYFTTGLTAFXMFXVYLLTF 382
>gb|AAF08185.1| (AF130229) NADH dehydrogenase subunit F [Phytolacca americana]
Length = 730
Score = 151 bits (378), Expect = 2e-35
Identities = 120/391 (30%), Positives = 186/391 (46%), Gaps = 49/391 (12%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 70 EFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSFN 129
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I +Y TGSF
Sbjct: 130 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGSF 189
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYL----LFLLAFGV-KAGMFPLHVWAPD 229
F D F +K ++ ++ LFL A V K+ FPLHVW PD
Sbjct: 190 EFRDFFEIFNN-----------LINKNEIHFLFCILCTLFLFAGPVAKSAQFPLHVWLPD 238
Query: 230 AYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLT 289
A I + + AG Y L L P VI+F+G +T
Sbjct: 239 AMEGPTPISALIHAATMVAAGFYVVARLLPLFI-----------VIPYIMNVISFIGIIT 287
Query: 290 IIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFL 349
+++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 288 VLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFL 344
Query: 350 IVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKW 400
++I+ G + K GGL +P T T I LSL GIPPL F SK
Sbjct: 345 GSGSIIHSMEAIVGYSPDKSQNMVLMGGLTRHVPITRTSFLIGTLSLCGIPPLACFWSKD 404
Query: 401 LIFEAVISQNLPILGGMVFFGSAIGFVYLIR 431
I + + PI + +F + + Y+ R
Sbjct: 405 EILNDIWVYS-PIFAIIAYFTAGLTAFYMFR 434
>gb|AAF27221.1|AF111741_1 (AF111741) NADH dehydrogenase [Patinoa sphaerocarpa]
Length = 688
Score = 151 bits (378), Expect = 2e-35
Identities = 110/355 (30%), Positives = 173/355 (47%), Gaps = 38/355 (10%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + GY FA MSL T LG+ T+
Sbjct: 83 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 142
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 143 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 202
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L L K+ FPLHVW PDA
Sbjct: 203 FEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 256
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVG 293
I + + AG++ L L P +I+ +G +T+++G
Sbjct: 257 PTPISALIHAATMVAAGIFXVARLLPLFI-----------VIPYIMNLISLIGIITVVLG 305
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL +
Sbjct: 306 ATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLGSGS 362
Query: 354 LI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
+I Y K++ F GGL + +P T + + LSL GIPPL F SK
Sbjct: 363 IIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIVFLVGTLSLCGIPPLACFWSK 417
>gb|AAF27238.1|AF111759_1 (AF111759) NADH dehydrogenase [Cola acuminata]
Length = 691
Score = 151 bits (378), Expect = 2e-35
Identities = 110/358 (30%), Positives = 178/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+LG+++ L I S++ VG+ ++ + GY FA MSL T LG+ T+
Sbjct: 83 FELGYLIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 142
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 143 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 202
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L + L L K+ FPLHVW PDA
Sbjct: 203 FEFQDLFEIFNNLIYNNEV------HFLFITLCASLLFAGAVAKSAQFPLHVWLPDAMEG 256
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 257 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 302
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 303 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLG 359
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 360 SGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSK 417
>gb|AAF44113.1| (AF230254) NADH dehydrogenase [Cullenia ceylanica]
Length = 707
Score = 151 bits (378), Expect = 2e-35
Identities = 115/369 (31%), Positives = 181/369 (48%), Gaps = 45/369 (12%)
Query: 53 GVSYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL- 108
G S+TI F+ G+ + L I S++ VG+ ++ + GY FA MSL
Sbjct: 72 GWSWTINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLF 131
Query: 109 -TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLV 162
T LG+ T+ +L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+
Sbjct: 132 NTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLL 191
Query: 163 AIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFP 222
I Y TGSF F D+ F + + L V L L K+ FP
Sbjct: 192 GILGFYWITGSFEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFP 245
Query: 223 LHVWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFG 279
LHVW PDA I + + AG++ + L+I++ P
Sbjct: 246 LHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIM 291
Query: 280 YVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAIS 339
+I+ +G +T+++G LA Q+DI+R AYS++SQ+GY++V LG+G+ AA++H I+
Sbjct: 292 NLISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMVALGMGS---YRAALFHLIT 348
Query: 340 HALFKGLFFLIVATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGI 390
HA K L FL ++I Y K++ F GGL + +P T + LSL GI
Sbjct: 349 HAYSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGI 408
Query: 391 PPLVGFASK 399
PPL F SK
Sbjct: 409 PPLACFWSK 417
>gb|AAF44115.1| (AF230256) NADH dehydrogenase [Triplochiton zambesiacus]
Length = 700
Score = 151 bits (378), Expect = 2e-35
Identities = 111/355 (31%), Positives = 172/355 (48%), Gaps = 38/355 (10%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + GY FA MSL T LG+ T+
Sbjct: 83 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 142
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 143 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 202
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L L K+ FPLHVW PDA
Sbjct: 203 FEFQDLFEIFNNLIYNNEV------PFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 256
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVG 293
I + + AG++ L L G P +I+ +G +T++ G
Sbjct: 257 PTPISALIHAATMVAAGIFLVARLLPLFIG-----------IPYIMNLISLIGIITVLFG 305
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL +
Sbjct: 306 ATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLGSGS 362
Query: 354 LI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
+I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 363 IIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSK 417
>pir||T13252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gossypium
stocksii chloroplast (fragment)
>gi|1654258|gb|AAB17752.1| (U55337) Gossypium stocksii
NADH dehydrogenase
Length = 686
Score = 151 bits (377), Expect = 3e-35
Identities = 110/358 (30%), Positives = 177/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + +GY FA MSL T LG+ T+
Sbjct: 71 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDEGYLRFFAYMSLFNTSMLGLVTSS 130
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 131 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 190
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L L K+ FPLHVW PDA
Sbjct: 191 FEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 244
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 245 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 290
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 291 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLA 347
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 348 SGSIIHSMEAIVGYSPEKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSK 405
>pir||T13253 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gossypium
turneri chloroplast (fragment)
>gi|1654260|gb|AAB17753.1| (U55336) Gossypium turneri
NADH dehydrogenase
Length = 688
Score = 151 bits (377), Expect = 3e-35
Identities = 110/358 (30%), Positives = 177/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + +GY FA MSL T LG+ T+
Sbjct: 71 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDEGYLRFFAYMSLFNTSMLGLVTSS 130
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 131 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 190
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L L K+ FPLHVW PDA
Sbjct: 191 FEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 244
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 245 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 290
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 291 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLA 347
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 348 SGSIIHSMEAIVGYSPEKSQNMVFMGGLRKHVPITKIAFLVGTLSLCGIPPLACFWSK 405
>sp|P31978|NUOM_ECOLI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
13) (NUO13) >gi|7432335|pir||C64999 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 4 - Escherichia coli
>gi|1788613|gb|AAC75337.1| (AE000317) NADH dehydrogenase
I chain M [Escherichia coli K12]
>gi|1799637|dbj|BAA16105.1| (D90859) NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 4 [Escherichia coli]
Length = 509
Score = 151 bits (377), Expect = 3e-35
Identities = 125/515 (24%), Positives = 223/515 (43%), Gaps = 55/515 (10%)
Query: 4 LLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTITVG-- 61
LL +I P + GFL W G++ + + L + L L G S T + G
Sbjct: 2 LLPWLILIPFIGGFLCWQTERFGVKVPRWIALITMGLTLALSLQLWLQGGYSLTQSAGIP 61
Query: 62 --------------GFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAK--DGYEWLFAL 105
G + + L+ + ++ ++GV A+L + G+ L +
Sbjct: 62 QWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLM 121
Query: 106 MSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRAAS---------LKYFLLSIMG 156
L G +G+F A D+ +FF FWE+M + ++ + AS K+F+ +
Sbjct: 122 WILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQAS 181
Query: 157 AYAMLVAIGLI----YAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLL 212
ML+AI + Y TG ++F+ L TP S ++ L+ L F +
Sbjct: 182 GLVMLIAILALVFVHYNATGVWTFN-----------YEELLNTPMSSGVEY-LLMLGFFI 229
Query: 213 AFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQV 272
AF VK + PLH W PDA+S+ + + +G+L K YG + + ++
Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPN-------- 281
Query: 273 RSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEA 332
++ F + +LG + I G +A Q DI+RL AY+S+S +G++L+ + G+ L +
Sbjct: 282 -ASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQG 340
Query: 333 AIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPP 392
A+ I+H L F++ L R + + GGL KM + ++ ++ G+P
Sbjct: 341 AVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPG 400
Query: 393 LVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDI--EDTKD 450
F +++I Q +P++ + FG VY + + +FG+ S I ++
Sbjct: 401 TGNFVGEFMILFGSF-QVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPG 459
Query: 451 APLPLAIGMAILGTLNVVFGVAPGIIAKELNAIFG 485
L + +L L V+ G P I ++ G
Sbjct: 460 MSLRELFMILLLVVLLVLLGFYPQPILDTSHSAIG 494
>pir||E71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 [similarity] -
Helicobacter pylori (strain J99)
>gi|4155782|gb|AAD06758.1| (AE001545) NADH
oxidoreductase I [Helicobacter pylori J99]
Length = 612
Score = 151 bits (377), Expect = 3e-35
Identities = 130/493 (26%), Positives = 216/493 (43%), Gaps = 53/493 (10%)
Query: 2 NELLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGAL---IPLIGLIKLYPSLGQGVSYT- 57
+ LL V+F PL+ A LF K +GV +L + IG + L+ SY
Sbjct: 4 SSLLSVVLFLPLIGAVYAGLFGAKAKALHVGVFNSLCVLVSFIGAVVLFIQAWHHQSYEK 63
Query: 58 -----ITVGGFKLGF--MMSHLNWIFSMIAAVVGVSAILGMVSTA----KDGYEWLFALM 106
I VG FK+GF M+ ++N + MI V VS ++ + S G+ F+ +
Sbjct: 64 YLFDWIVVGNFKVGFSLMLDNINAV--MIVVVTLVSFLVHVYSIGYMEHDTGFNRYFSYL 121
Query: 107 S--LTGALGIFTAQDLVVFFIFWEIMTFASFMMV-----LKFNRAASLKYFLLSIMGAYA 159
S + L + + + + FI WE + S++++ K AS++ F+++ +
Sbjct: 122 SGFVFSMLVLVLSDNFLGLFIGWEGVGLCSYLLIGFWYHKKSANNASIEAFVMNRITDLG 181
Query: 160 MLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAG 219
ML+ I LI+ G+ + ++ + S + + LF+ A G K+
Sbjct: 182 MLMGIILIFWNFGTLQYKEVFSMLNNADYSMLF-----------YISVFLFIGAMG-KSA 229
Query: 220 MFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAP-AF 278
FP+H W +A I + + AGVY L+I + SA
Sbjct: 230 QFPMHTWLANAMEGPTPVSALIHAATMVTAGVY------------LIIRANPLYSAVFEV 277
Query: 279 GYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAI 338
GY IA LG + G +A + +D++R+ AYS++SQ+GY+ V G+G A++H
Sbjct: 278 GYFIACLGAFVALFGASMALVNKDLKRIVAYSTLSQLGYMFVAAGLG---AYAIALFHLF 334
Query: 339 SHALFKGLFFLIVATLIY-RTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFA 397
+HA FK L FL +++ + G L + M T I ++L GI P G+
Sbjct: 335 THAFFKSLLFLGSGNVMHAMEDNLDITKMGALYKPMRITAVFMIIGSVALCGIYPFAGYF 394
Query: 398 SKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAI 457
SK I E + IL ++ G+ Y R V+F + +I +A + +
Sbjct: 395 SKDKILEVAFGMHHHILWFVLLIGAIFTAFYSFRLIMLVFFAPKQHEINHPHEAKNFMLL 454
Query: 458 GMAILGTLNVVFG 470
M LG L V+ G
Sbjct: 455 SMLPLGVLAVIAG 467
>gi|7525082 NADH dehydrogenase ND5 [Arabidopsis thaliana]
>gi|6685678|sp|P56752|NU5C_ARATH NADH-PLASTOQUINONE
OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|5881743|dbj|BAA84434.1| (AP000423) NADH
dehydrogenase ND5 [Arabidopsis thaliana]
Length = 746
Score = 151 bits (377), Expect = 3e-35
Identities = 107/358 (29%), Positives = 178/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + GY FA M T LG+ T+
Sbjct: 83 FEFGYFIDPLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMGFFNTSMLGLVTSS 142
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ + FWE++ S++++ F R A K F+ + +G + +L+ I +Y TGS
Sbjct: 143 NLIQVYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGS 202
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F ++ + + L + L L + K+ FPLHVW PDA
Sbjct: 203 FEFQDLFEIFNNLILNNRV------NLLFLTLCAFLLFVGPIAKSAQFPLHVWLPDAMEG 256
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P+ Y+I+ +G +T+
Sbjct: 257 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PSIMYIISLIGIITV 302
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL
Sbjct: 303 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLG 359
Query: 351 VATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I+ G + K GGL + +P T T I LSL GIPPL F SK
Sbjct: 360 SGSIIHSMEAIVGYSPDKSQNMILMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSK 417
>gb|AAF08151.1| (AF130195) NADH dehydrogenase subunit F [Symphoricarpos
orbiculatus]
Length = 722
Score = 151 bits (377), Expect = 3e-35
Identities = 109/358 (30%), Positives = 178/358 (49%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+LG+++ L I S++ VG+ ++ + GY FA MS + LG+ T+
Sbjct: 74 FELGYLIDPLTTIMSILITTVGIMVLVYSDNYMSHDQGYLRFFAYMSFFSSSMLGLVTSS 133
Query: 119 DLVVFFIFWEIMTFASFMMVLKFNRA-----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ ++ A K F+ + +G + +L+ I Y TGS
Sbjct: 134 NLIQIYIFWELVGMCSYLLIGFWSTRPAAANACQKAFVTNRVGDFGLLLGILGFYWLTGS 193
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L +LF K+ FPLHVW PDA
Sbjct: 194 FEFRDLFEIFNNLIYNNEV------HFLFVILCAVLFFAGAVAKSAQFPLHVWLPDAMEG 247
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AGV+ + L+I++ P +I+ +G LT+
Sbjct: 248 PTPISALIHAATMVAAGVFLVARLLPLFIII--------------PYIMNLISLIGILTV 293
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL
Sbjct: 294 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAFSKALLFLG 350
Query: 351 VATLI--------YRTGKTE-FKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ GGL + +P T T + LSL GIPPL F SK
Sbjct: 351 SGSIIHSMETIVGYSPNKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWSK 408
>gb|AAF08865.1|AF194834_1 (AF194834) NADH dehydrogenase [Basella alba]
Length = 717
Score = 151 bits (377), Expect = 3e-35
Identities = 116/389 (29%), Positives = 193/389 (48%), Gaps = 43/389 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 84 EFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDHGYLRFFAYMSFFNTSMLGLVTSSN 143
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 144 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 203
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F ++ + + +LLF A K+ FPLHVW PDA
Sbjct: 204 EFRDLFEIFNN---FKLINANGVHFLVCILCTFLLFTGAVA-KSAQFPLHVWLPDAMEGP 259
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L + + + + I+F+G +T+++G
Sbjct: 260 TPISALIHAATMVAAGI--FLVARLL---PLFVVIPYIMNG------ISFIGIITVLLGA 308
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL ++
Sbjct: 309 TLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGSV 365
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K GGL + +P T I LSL GIPPL F SK +
Sbjct: 366 IHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKNAFLIGTLSLCGIPPLACFWSK----DE 421
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIR 431
+++ + PI + +F + + Y+ R
Sbjct: 422 ILNDSWLYSPIFAIIAYFTAGLTAFYMFR 450
>gb|AAF08889.1|AF194858_1 (AF194858) NADH dehydrogenase [Quiabentia verticillata]
Length = 691
Score = 151 bits (377), Expect = 3e-35
Identities = 118/386 (30%), Positives = 191/386 (48%), Gaps = 39/386 (10%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 62 EFGYLIDPLTSIMSMLITTVAILVLVYSDNYMSHDRGYLRFFAYMSFFNTSMLGLVTSSN 121
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 122 LIQIYIFWELVGMCSYLLIGFWFIRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 181
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + ++ + +LLF A K+ FPLHVW PDA
Sbjct: 182 EFRDLFEIF-----NNLINKNEIHFLFCILCTFLLFAGAVA-KSAQFPLHVWLPDAMEGP 235
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L + + + + I+F+G +T+++G
Sbjct: 236 TPISALIHAATMVAAGI--FLVARLL---PLFVVIPYITNG------ISFIGIITVLLGA 284
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL ++
Sbjct: 285 TLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGSV 341
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K GGL + +P T T I LSL GIPPL F SK I
Sbjct: 342 IHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSKDEILNG 401
Query: 406 VISQNLPILGGMVFFGSAIGFVYLIR 431
+ PI + +F + + Y+ R
Sbjct: 402 SWLYS-PIFAIIAYFTAGLTAFYMFR 426
>gb|AAF90035.1| (AF238049) NADH dehydrogenase subunit F [Arabidopsis thaliana]
Length = 409
Score = 151 bits (377), Expect = 3e-35
Identities = 107/358 (29%), Positives = 178/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + GY FA M T LG+ T+
Sbjct: 66 FEFGYFIDPLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMGFFNTSMLGLVTSS 125
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ + FWE++ S++++ F R A K F+ + +G + +L+ I +Y TGS
Sbjct: 126 NLIQVYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGS 185
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F ++ + + L + L L + K+ FPLHVW PDA
Sbjct: 186 FEFQDLFEIFNNLILNNRV------NLLFLTLCAFLLFVGPIAKSAQFPLHVWLPDAMEG 239
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P+ Y+I+ +G +T+
Sbjct: 240 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PSIMYIISLIGIITV 285
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL
Sbjct: 286 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLG 342
Query: 351 VATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I+ G + K GGL + +P T T I LSL GIPPL F SK
Sbjct: 343 SGSIIHSMEAIVGYSPDKSQNMILMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSK 400
>gb|AAG12211.1| (AF163445) NADH dehydrogenase subunit F [Carex anthoxanthea]
Length = 687
Score = 151 bits (377), Expect = 3e-35
Identities = 119/395 (30%), Positives = 195/395 (49%), Gaps = 50/395 (12%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ L I + VG++ ++ + Y FA ++L A LG+ T+ +
Sbjct: 71 EFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSHDQAYLRFFAYLNLFNASMLGLVTSSN 130
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWEI+ S++++ F R A K F+ + +G + +L+ I Y GSF
Sbjct: 131 LIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWIIGSF 190
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ E + ++ S +LLF+ A K+ FPLH+W PDA
Sbjct: 191 EFRDLF-----EITNNLIHKNGVNSLFITLCTFLLFVGAIA-KSAQFPLHIWLPDAMEGP 244
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AGV+ L ++ LLI P ++I+ +G +T+ +G
Sbjct: 245 TPVSALIHAATMVAAGVF----LVARLFPLLLI-------TPNIMHIISSIGLITLFLGA 293
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q DI+R AYS++SQ+GYI++ LGIG+S A++H I+HA K L FL ++
Sbjct: 294 TLALAQIDIKRSLAYSTMSQLGYIILALGIGSS---RTALFHLITHAYSKALLFLGSGSI 350
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + +K+ GGL + +P T T + LSL GIPPL F SK +
Sbjct: 351 IHSMEPVVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSK----DE 406
Query: 406 VISQN---LPILGGMVFFGSAIG-----FVYLIRF 432
++S + PI G + +F + + VYL+ F
Sbjct: 407 ILSNSWLYSPIFGIITYFTTGLTAFXMFXVYLLTF 441
>gb|AAG12229.1| (AF163463) NADH dehydrogenase subunit F [Schoenoxiphium burkei]
Length = 593
Score = 151 bits (377), Expect = 3e-35
Identities = 114/352 (32%), Positives = 177/352 (49%), Gaps = 43/352 (12%)
Query: 99 YEWLFALMSLTGA--LGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFL 151
Y FA ++L A LG+ T+ +L+ +IFWEI+ S++++ F R A K FL
Sbjct: 12 YLRFFAYLNLFNASMLGLVTSSNLIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFL 71
Query: 152 LSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFL 211
+ +G + +L+ I Y GSF F D+ E ++ S +LLF+
Sbjct: 72 TNRVGDFGLLLGILGFYWIIGSFEFRDLF-----EITKNLIQKNGVNSLFTTLCTFLLFV 126
Query: 212 LAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQ 271
A K+ FPLH+W PDA I + + AGV+ L ++ LLI
Sbjct: 127 GAIA-KSAQFPLHIWLPDAMEGPTPISALIHAATMVAAGVF----LVARLFPLLLI---- 177
Query: 272 VRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIE 331
P ++I+ +G +T+ +G LA Q DI+R AYS+ISQ+GYI++ LGIG+S
Sbjct: 178 ---TPNIMHIISSIGLITLFLGATLALAQIDIKRSLAYSTISQLGYIILALGIGSS---R 231
Query: 332 AAIYHAISHALFKGLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFI 382
A++H I+HA K L FL ++I+ G + +K+ GGL + +P T T +
Sbjct: 232 TALFHLITHAXSKALLFLGSGSIIHSMEPVVGYSPYKNQNMVFMGGLTKYIPITRTAFLL 291
Query: 383 AILSLAGIPPLVGFASKWLIFEAVISQN---LPILGGMVFFGSAIGFVYLIR 431
LSL GIPPL F SK + ++S + PI G + +F + + Y+ R
Sbjct: 292 GTLSLCGIPPLACFWSK----DEILSNSWLYSPIFGIITYFTTGLTAFYMFR 339
>pir||A48643 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 - Escherichia
coli >gi|304921|gb|AAA53583.1| (L19568) NADH ubiquinone
oxidoreductase subunit [Escherichia coli]
>gi|416008|emb|CAA48372.1| (X68301) NADH dehydrogenase
I, subunit nuoM [Escherichia coli]
Length = 509
Score = 151 bits (377), Expect = 3e-35
Identities = 125/515 (24%), Positives = 223/515 (43%), Gaps = 55/515 (10%)
Query: 4 LLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTITVG-- 61
LL +I P + GFL W G++ + + L + L L G S T + G
Sbjct: 2 LLPWLILIPFIGGFLCWQTERFGVKVPRWIALITMGLTLALSLQLWLQGGYSLTQSAGIP 61
Query: 62 --------------GFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAK--DGYEWLFAL 105
G + + L+ + ++ ++GV A+L + G+ L +
Sbjct: 62 QWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLM 121
Query: 106 MSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRAAS---------LKYFLLSIMG 156
L G +G+F A D+ +FF FWE+M + ++ + AS K+F+ +
Sbjct: 122 WILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQAS 181
Query: 157 AYAMLVAIGLI----YAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLL 212
ML+AI + Y TG ++F+ L TP S ++ L+ L F +
Sbjct: 182 GLVMLIAILALVFVHYNATGVWTFN-----------YEELLNTPMSSGVEY-LLMLGFFI 229
Query: 213 AFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQV 272
AF VK + PLH W PDA+S+ + + +G+L K YG + + ++
Sbjct: 230 AFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPN-------- 281
Query: 273 RSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEA 332
++ F + +LG + I G +A Q DI+RL AY+S+S +G++L+ + G+ L +
Sbjct: 282 -ASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQG 340
Query: 333 AIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPP 392
A+ I+H L F++ L R + + GGL KM + ++ ++ G+P
Sbjct: 341 AVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPG 400
Query: 393 LVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDI--EDTKD 450
F +++I Q +P++ + FG VY + + +FG+ S I ++
Sbjct: 401 TGNFVGEFMILFGSF-QVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPG 459
Query: 451 APLPLAIGMAILGTLNVVFGVAPGIIAKELNAIFG 485
L + +L L V+ G P I ++ G
Sbjct: 460 MSLRDVFMILLLVVLLVLLGFYPQPILDTSHSAIG 494
>emb|CAC14148.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 568
Score = 151 bits (377), Expect = 3e-35
Identities = 116/486 (23%), Positives = 221/486 (44%), Gaps = 37/486 (7%)
Query: 5 LLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTI----TV 60
LLAV + L A + +L + +R+ + I A+ ++ + P++ G + + +
Sbjct: 7 LLAVAVAGLAALAILFLNKREKLRDAVSPIAAVAMFAIVVSMAPTVLAGGTVELRLFEVL 66
Query: 61 GGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEW----LFALM--SLTGALGI 114
G + L +F+ +++++ + A + + + +E FA SL A+G
Sbjct: 67 PGIDVALRADALGMVFATVSSLLWIVAAVYSIGYMRHLHEHAQTRFFACFATSLAAAVGG 126
Query: 115 FTAQDLVVFFIFWEIMTFASFMMVLKFNRA----ASLKYFLLSIMGAY--AMLVAIGLIY 168
A +L IF+E+++ ++ +V S KY L+ +MGA +L A+ L Y
Sbjct: 127 AFAANLFTLVIFYEVLSLVTYPLVYHHEDEEGWRGSRKY-LVYLMGASKSVLLAALALTY 185
Query: 169 AKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAP 228
GS F G A +T+L ++Y +L F KA + P+H W P
Sbjct: 186 HIAGSLDFVRGGLLTGANASATLL-----------TVVYFCYLFGFA-KAAVMPMHAWLP 233
Query: 229 DAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGL 288
A + + + K GV+ + + ++G + +G++ A Y+++F
Sbjct: 234 AAMVAPTPVSALLHAVAVVKMGVFCVLRVIFHVFG--VSTVGELGLGAATAYLVSF---- 287
Query: 289 TIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFF 348
TI++ + A ++D++ AYS++SQ+ YI++G + + L + I H +HA K F
Sbjct: 288 TILMASVYALTRDDLKARLAYSTVSQLSYIVLGAVLLSPLAMVGGIIHIAAHAFSKITLF 347
Query: 349 LIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVIS 408
++ +GK D G+ ++P+T F+A LS+ GIPP GF SKW + E +
Sbjct: 348 FCAGSIYCASGKRNISDMAGIGRRLPWTMGAFFVASLSMIGIPPTAGFVSKWYLAEGSVE 407
Query: 409 QNLPILGGMVFFGSAIGFVYLIRFTYAVWF-GQRPSDIEDTKDAPLPLAIGMAILGTLNV 467
++ S + Y + +Y +F + ++ PL +AI + L+V
Sbjct: 408 AGQMAFLAVLLASSVLNAAYFLPVSYTAFFEAETKESRAPVREIPL-VAIPLVATAILSV 466
Query: 468 VFGVAP 473
+ G+ P
Sbjct: 467 LMGIFP 472
>pir||T13243 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gossypium
longicalyx chloroplast (fragment)
>gi|1654252|gb|AAB17749.1| (U55338) Gossypium longicalyx
NADH dehydrogenase
Length = 688
Score = 150 bits (376), Expect = 3e-35
Identities = 110/358 (30%), Positives = 177/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + +GY FA MSL T LG+ T+
Sbjct: 71 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDEGYLRFFAYMSLFNTSMLGLVTSS 130
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 131 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 190
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L L K+ FPLHVW PDA
Sbjct: 191 FEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 244
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 245 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 290
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 291 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLA 347
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 348 SGSIIHSMEAIVGYSPEKSQNMVFMGGLRKHVPVTQIAFLVGTLSLCGIPPLACFWSK 405
>gb|AAF08169.1| (AF130213) NADH dehydrogenase subunit F [Diospyros texana]
Length = 741
Score = 150 bits (376), Expect = 3e-35
Identities = 114/396 (28%), Positives = 194/396 (48%), Gaps = 57/396 (14%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+++ L I S++ VG+ ++ + GY FA MS T LG+ T+
Sbjct: 74 FEFGYLIDPLTSIMSILITTVGIMVLVYSDNYMSHDQGYLRFFAYMSFFSTSMLGLVTSS 133
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y TGS
Sbjct: 134 NLIQIYIFWELVGMCSYLLIGFWFTRPVAEDACQKAFVTNRVGDFGLLLGILGFYWITGS 193
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFG---VKAGMFPLHVWAPDA 230
F F D+ F + ++++V + L LL F K+ FPLHVW PDA
Sbjct: 194 FEFRDLFEIFNNLIYN---------NEVNVLFVILCALLLFAGAVAKSAQFPLHVWLPDA 244
Query: 231 YSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGG 287
I + + AG++ + L+I++ P ++I+ +G
Sbjct: 245 MEGPTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMHLISLIGI 290
Query: 288 LTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLF 347
+T+ +G LA Q+DI+R AYS++SQ+GY+++ LG+G+ A++H I+HA K L
Sbjct: 291 ITVFLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRTALFHLITHAYSKALL 347
Query: 348 FLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFAS 398
FL ++I+ G + K GGL + +P T T + LSL GIPPL F S
Sbjct: 348 FLGSGSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWS 407
Query: 399 KWLIFEAVISQN---LPILGGMVFFGSAIGFVYLIR 431
K + +++ + PI + +F + + Y+ R
Sbjct: 408 K----DEILNDSWLYSPIFAIIAWFTAGLTAFYMFR 439
>gb|AAF08859.1|AF194827_1 (AF194827) NADH dehydrogenase [Mollugo verticillata]
Length = 692
Score = 150 bits (376), Expect = 3e-35
Identities = 116/389 (29%), Positives = 194/389 (49%), Gaps = 45/389 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 65 EFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLVTSSN 124
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 125 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 184
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + ++ + +LLF+ A K+ FPLHVW PDA
Sbjct: 185 EFRDLFEIF-----NNLITNNEINYLFCILCAFLLFVGAVA-KSAQFPLHVWLPDAMEGP 238
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L I + + S I+F+G +T+++G
Sbjct: 239 TPISALIHAATMVAAGI--FLVARLL---PLFIVIPYIMSG------ISFIGIITVLLGA 287
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL ++
Sbjct: 288 TLALAQKDIKRSLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLGSGSV 344
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K GGL + +P T I LSL GIPPL F SK +
Sbjct: 345 IHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKIAFLIGTLSLCGIPPLACFWSK----DE 400
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIR 431
+++ + P+ + +F + + Y+ R
Sbjct: 401 ILNDSWLYSPVFAIIAYFTAGLTAFYMFR 429
>gb|AAF27204.1|AF111724_1 (AF111724) NADH dehydrogenase [Matisia cordata]
Length = 709
Score = 150 bits (376), Expect = 3e-35
Identities = 112/358 (31%), Positives = 176/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + GY FA MSL T LG+ T
Sbjct: 83 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTTS 142
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 143 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 202
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + G P L V L L K+ FPLHVW PDA
Sbjct: 203 FEFQDLFEIFNNLIYNN---GVPF---LFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 256
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 257 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 302
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 303 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLG 359
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 360 SGSIIHSMEAIVGYSPEKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSK 417
>gb|AAF27216.1|AF111736_1 (AF111736) NADH dehydrogenase [Ceiba acuminata]
Length = 708
Score = 150 bits (376), Expect = 3e-35
Identities = 110/358 (30%), Positives = 176/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + GY FA MSL T LG+ T+
Sbjct: 83 FEFGYFIDSLTSIMSILXTTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 142
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 143 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILRFYWITGS 202
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L L K+ FPLHVW PDA
Sbjct: 203 FEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 256
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 257 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 302
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 303 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLG 359
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 360 SGSIIHSMEAIVGYXPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSK 417
>gb|AAF44114.1| (AF230255) NADH dehydrogenase [Durio oxleyanus]
Length = 707
Score = 150 bits (376), Expect = 3e-35
Identities = 115/369 (31%), Positives = 180/369 (48%), Gaps = 45/369 (12%)
Query: 53 GVSYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL- 108
G S+TI F+ G+ + L I S++ VG+ ++ + GY FA MSL
Sbjct: 72 GWSWTINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLF 131
Query: 109 -TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLV 162
T LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G + +L+
Sbjct: 132 NTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRIGDFGLLL 191
Query: 163 AIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFP 222
I Y TGSF F D+ F + + L V L L K+ FP
Sbjct: 192 GILGFYWITGSFEFQDLFEIFNNVIYNNEV------HFLFVTLCASLLFAGAVAKSAQFP 245
Query: 223 LHVWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFG 279
LHVW PDA I + + AG++ + L+I++ P
Sbjct: 246 LHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIM 291
Query: 280 YVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAIS 339
+I+ +G +T+++G LA Q+DI+R AYS++SQ+GY++V LG+G+ AA++H I+
Sbjct: 292 NLISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMVALGMGS---YRAALFHLIT 348
Query: 340 HALFKGLFFLIVATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGI 390
HA K L FL ++I Y K++ F GGL + +P T + LSL GI
Sbjct: 349 HAYSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGI 408
Query: 391 PPLVGFASK 399
PPL F SK
Sbjct: 409 PPLACFWSK 417
>gb|AAG12227.1| (AF163461) NADH dehydrogenase subunit F [Kobresia uncinioides]
Length = 626
Score = 150 bits (376), Expect = 3e-35
Identities = 115/389 (29%), Positives = 192/389 (48%), Gaps = 45/389 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ + I + VG++ ++ + Y FA ++L A LG+ T+ +
Sbjct: 8 EFGYLIDSITSIMLTLITTVGITVLIYSDNYMSHDQAYLRFFAYLNLFNASMLGLVTSSN 67
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWEI+ S++++ F R A K F+ + +G + +L+ I Y GSF
Sbjct: 68 LIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWIIGSF 127
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ E + ++ S +LLF+ A K+ FPLH+W PDA
Sbjct: 128 EFRDLF-----EITNNLIQKNGVNSLFTTLCTFLLFVGAIA-KSAQFPLHIWLPDAMEGP 181
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AGV+ L ++ LLI P ++I+ +G +T+ +G
Sbjct: 182 TPISALIHAATMVAAGVF----LVARLFPLLLI-------TPNIMHIISSIGLITLFLGA 230
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q DI+R AYS++SQ+GYI++ LGIG+S A++H I+H K L FL ++
Sbjct: 231 TLALAQIDIKRSLAYSTMSQLGYIILALGIGSS---RTALFHLITHGYSKALLFLGSGSI 287
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + +K+ GGL + +P T T + LSL GIPPL F SK +
Sbjct: 288 IHSMEPVVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLGCFWSK----DE 343
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIR 431
++S + PI G + +F + + Y+ R
Sbjct: 344 ILSNSWLYSPIFGIITYFTTGLTAFYMFR 372
>gb|AAG19147.1| (AE005012) NADH dehydrogenase/oxidoreductase; NdhG3 [Halobacterium
sp. NRC-1]
Length = 403
Score = 150 bits (376), Expect = 3e-35
Identities = 111/386 (28%), Positives = 179/386 (45%), Gaps = 27/386 (6%)
Query: 101 WLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMV--LKFNRA---ASLKYFLLSIM 155
+ L++ TG + A LV FI E+ + S+++V LK +R A LKYFL+ +
Sbjct: 17 YALTLLAATGMTLMAAANSLVTVFISLELASLPSYVLVSYLKRDRGSIEAGLKYFLIGAL 76
Query: 156 GAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFG 215
+ ML I L+YA TG I+ T+ GT L + ++ L+ AF
Sbjct: 77 SSGVMLYGISLVYAATGVMGLPAIA--------DTITAGTDFVGVLGLGIVMLVAGFAF- 127
Query: 216 VKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSA 275
K P H WAP+AY +A S SKA GF +L+ + +D+ +
Sbjct: 128 -KTASVPFHFWAPEAYEGAPAPVSAFISSA-SKAA--GFAVLFRVFTTAFPLDV-IAGTV 182
Query: 276 PAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGL-------GIGTSL 328
+ + A L +T+ +G AA QE+++R+ AYSS+ GY+L+GL G SL
Sbjct: 183 IDWSLLFAALAVVTMTLGNFAAATQENVKRMLAYSSVGHAGYVLIGLAALQSGGGAQNSL 242
Query: 329 GIEAAIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLA 388
+ A++ H + + FL VA Y F+D+ GL+++ P + + SLA
Sbjct: 243 VLGASMMHLLVYGFMNTGAFLFVALAEYWDVGRTFEDYNGLSKRAPVACVAMTVFMFSLA 302
Query: 389 GIPPLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIE-D 447
G+P GF SK+++F + L G+ SA+ Y R A+W D+
Sbjct: 303 GLPVGAGFLSKYVLFAGAVQSGFAWLAGIAAINSALSLFYYSRVVKALWIEDPRDDLSLS 362
Query: 448 TKDAPLPLAIGMAILGTLNVVFGVAP 473
+ L +A+ A +GT+ ++ P
Sbjct: 363 GQPTGLYVAVLAAAVGTIALLVAFDP 388
>emb|CAC14150.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 491
Score = 150 bits (376), Expect = 3e-35
Identities = 113/425 (26%), Positives = 198/425 (46%), Gaps = 46/425 (10%)
Query: 53 GVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTGA- 111
G++Y + V G F+ + A + +S + V+ + E++ +L+ +
Sbjct: 71 GITYALGVDGISALFLF--------LTALLSLISVLASWVAIDRKVKEFMVSLLVMQALM 122
Query: 112 LGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA----ASLKYFLLSIMGAYAMLVAIGLI 167
LG+F A DL +F++FWE M ++++ + A+ K+FL ++ G+ L+ + ++
Sbjct: 123 LGVFCALDLFLFYVFWEAMLIPMYLIIGVWGGEGRVYAAFKFFLYTLAGSILFLIGVIVL 182
Query: 168 YAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWA 227
Y + G DI A G++ + G ++ ++ FL+AF VK M P+H W
Sbjct: 183 YFQGGETF--DILALTGQD----LPFGVQSW-------LFFAFLVAFAVKVPMVPVHTWL 229
Query: 228 PDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGG 287
PDA+ + + + I +GVL K G YGF+ + M + + + ++ L
Sbjct: 230 PDAHVQAPTAGSIILAGVLLKMGAYGFLRFSLPMLPEASL---------YYSTLMLALSA 280
Query: 288 LTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLF 347
L I+ GG+LA Q+D+++L AYSSIS +G++ +G+ G+E +I +H + G
Sbjct: 281 LAIVYGGLLALAQDDLKKLVAYSSISHMGFVTLGIFALNLRGLEGSILQMFNHGITTGAL 340
Query: 348 FLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVI 407
FL V + RT ++GGL + P + LS +P F + L+
Sbjct: 341 FLFVGLIYERTHTRSIANYGGLMKAAPVYTAFLALFTLSSMALPGTNAFVGELLVLSGGF 400
Query: 408 SQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPS-----DIEDTKD----APLPLAIG 458
+ NL G G+ + YL+ V G PS +I D A LPLAI
Sbjct: 401 AANL-AAGAAAVVGALLSAAYLLGMYGKVALGP-PSVSAKYEIHDVNGREMAAILPLAIF 458
Query: 459 MAILG 463
+ +G
Sbjct: 459 VLWVG 463
>pir||T12763 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Cienfuegosia
tripartita chloroplast (fragment)
>gi|1654238|gb|AAB17742.1| (U55324) Cienfuegosia
tripartita NADH dehydrogenase
Length = 690
Score = 150 bits (375), Expect = 4e-35
Identities = 111/358 (31%), Positives = 175/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + GY FA MSL T LG+ T+
Sbjct: 71 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 130
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 131 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 190
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L L K+ FPLHVW PDA
Sbjct: 191 FEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 244
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 245 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 290
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY++ LG+G+ AA++H I+HA K L FL
Sbjct: 291 LLGATLALAQQDIKRGLAYSTMSQLGYMMFALGMGS---YRAALFHLITHAYSKALLFLA 347
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T I LSL GIPPL F SK
Sbjct: 348 SGSIIHSMEALVGYSPEKSQNMVFMGGLRKHVPITQIAFLIGTLSLCGIPPLACFWSK 405
>pir||T13235 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gossypium
arboreum chloroplast (fragment)
>gi|1654240|gb|AAB17743.1| (U55331) Gossypium arboreum
NADH dehydrogenase
Length = 686
Score = 150 bits (375), Expect = 4e-35
Identities = 110/358 (30%), Positives = 176/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + +GY FA MSL T LG+ T+
Sbjct: 71 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDEGYLRFFAYMSLFNTSMLGLVTSS 130
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 131 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 190
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L L K+ FPLHVW PDA
Sbjct: 191 FEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 244
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 245 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 290
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 291 LLGATLALAQNDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLA 347
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 348 SGSIIHSMEAIVGYSPEKSQNMVFMGGLRKHVPVTQIAFLVGTLSLCGIPPLACFWSK 405
>pir||T13242 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gossypioides
kirkii chloroplast (fragment) >gi|1654250|gb|AAB17748.1|
(U55329) Gossypioides kirkii NADH dehydrogenase
Length = 688
Score = 150 bits (375), Expect = 4e-35
Identities = 110/358 (30%), Positives = 176/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + GY FA MSL T LG+ T+
Sbjct: 71 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 130
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 131 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 190
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L L K+ FPLHVW PDA
Sbjct: 191 FEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 244
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 245 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 290
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 291 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLA 347
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 348 SGSIIHSMEAIVGYSPEKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSK 405
>pir||T13373 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Kokia
drynarioides chloroplast (fragment)
>gi|1654266|gb|AAB17756.1| (U55330) Kokia drynarioides
NADH dehydrogenase
Length = 688
Score = 150 bits (375), Expect = 4e-35
Identities = 110/358 (30%), Positives = 176/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + GY FA MSL T LG+ T+
Sbjct: 71 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 130
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 131 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 190
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L L K+ FPLHVW PDA
Sbjct: 191 FEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 244
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 245 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 290
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 291 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLA 347
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 348 SGSIIHSMEAIVGYSPEKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSK 405
>pir||T13282 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Lebronnecia
kokioides chloroplast (fragment)
>gi|1654268|gb|AAB17757.1| (U55325) Lebronnecia
kokioides NADH dehydrogenase
Length = 688
Score = 150 bits (375), Expect = 4e-35
Identities = 110/358 (30%), Positives = 176/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + GY FA MSL T LG+ T+
Sbjct: 71 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 130
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 131 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 190
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L L K+ FPLHVW PDA
Sbjct: 191 FEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 244
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 245 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 290
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 291 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLA 347
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 348 SGSIIHSMEAIVGYSPEKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSK 405
>pir||T13766 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Thespesia
populnea chloroplast (fragment)
>gi|1654270|gb|AAB17758.1| (U55328) Thespesia populnea
NADH dehydrogenase
Length = 686
Score = 150 bits (375), Expect = 4e-35
Identities = 110/358 (30%), Positives = 176/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + GY FA MSL T LG+ T+
Sbjct: 71 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 130
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 131 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 190
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L L K+ FPLHVW PDA
Sbjct: 191 FEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 244
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 245 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 290
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 291 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLA 347
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 348 SGSIIHSMEAIVGYSPEKSQNMVFMGGLRKHVPITQISFLVGTLSLCGIPPLACFWSK 405
>pir||T13768 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Thespesia
thespesioides chloroplast (fragment)
>gi|1654272|gb|AAB17759.1| (U55326) Thespesia
thespesioides NADH dehydrogenase
Length = 686
Score = 150 bits (375), Expect = 4e-35
Identities = 110/358 (30%), Positives = 176/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+ + L I S++ VG+ ++ + GY FA MSL T LG+ T+
Sbjct: 71 FEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 130
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 131 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 190
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L L K+ FPLHVW PDA
Sbjct: 191 FEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 244
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 245 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 290
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 291 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLA 347
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 348 SGSIIHSMEAIVGYSPEKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSK 405
>gb|AAD52735.1|AF123677_1 (AF123677) NADH dehydrogenase [Bacopa caroliniana]
Length = 702
Score = 150 bits (375), Expect = 4e-35
Identities = 112/359 (31%), Positives = 176/359 (48%), Gaps = 44/359 (12%)
Query: 62 GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTA 117
GF+ G+++ L I M+ VG+ ++ T GY FA MS T LG+ T+
Sbjct: 74 GFEFGYLIDPLTSIMLMLITTVGIMVLIYSDKYMTHDQGYLKFFAYMSFFSTSMLGLVTS 133
Query: 118 QDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTG 172
+L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y TG
Sbjct: 134 SNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWITG 193
Query: 173 SFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYS 232
SF F D+ F + ++ S LLF A K+ FPLHVW PDA
Sbjct: 194 SFEFRDLFEIF-----NNLIYNNEVNSPFVTLCAVLLFAGAIA-KSAQFPLHVWLPDAME 247
Query: 233 ETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLT 289
I + + AGV+ + L+I++ P I+ +G +T
Sbjct: 248 GPTPISALIHAATMVAAGVFLVARLLPLFIVI--------------PYIMNFISLIGIIT 293
Query: 290 IIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFL 349
+++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL
Sbjct: 294 VLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---CRSALFHLITHAYSKALLFL 350
Query: 350 IVATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 351 GSGSVIHSMETIVGYSPDKSQNMVFMGGLTKHVPITKISFLVGTLSLCGIPPLACFWSK 409
>gb|AAD52750.1|AF123692_1 (AF123692) NADH dehydrogenase [Tetranema mexicanum]
Length = 702
Score = 150 bits (375), Expect = 4e-35
Identities = 110/358 (30%), Positives = 179/358 (49%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+++ L I SM+ VG+ ++ GY FA MS T LG+ T+
Sbjct: 75 FEFGYLIDPLTSIMSMLITTVGIMVLVYSDNYMAHDQGYLRFFAYMSFFSTSMLGLVTSS 134
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F+R A K F+ + +G + +L+ I Y TGS
Sbjct: 135 NLIQIYIFWELVGVCSYLLIGFWFSRPLAANACQKAFVTNRVGDFGLLLGILGFYWITGS 194
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + P F L AL++ + K+ FPLHVW PDA
Sbjct: 195 FEFRDLFEIFNNLIYNNEVN--PPFVTLCAALLFAGAV----AKSAQFPLHVWLPDAMEG 248
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 249 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 294
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL
Sbjct: 295 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLG 351
Query: 351 VATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I+ G + K GGL + +P T T + LSL GIPPL F SK
Sbjct: 352 SGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSK 409
>gb|AAF08159.1| (AF130203) NADH dehydrogenase subunit F [Hedera helix]
Length = 749
Score = 150 bits (375), Expect = 4e-35
Identities = 119/410 (29%), Positives = 195/410 (47%), Gaps = 45/410 (10%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ + GY FA MS T LG+ T+ +
Sbjct: 84 EFGYLIDPLTSIMSILITTVGIMVLVYSDNYMSHDQGYLRFFAYMSFFSTSMLGLVTSSN 143
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K FL + +G + +L+ I Y TGSF
Sbjct: 144 LIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFLTNRVGDFGLLLGILGFYWITGSF 203
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + + + L V L +L K+ FPLHVW PDA
Sbjct: 204 EFRDLFKIFSNLIYNNEV------NFLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGP 257
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AG++ I L+I++ P +I+ +G +T++
Sbjct: 258 TPISALIHAATMVAAGIFLVARLIPLFIVI--------------PHIMNLISLVGIITVL 303
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q+DI+R AYS++SQ+GYI++ LG+G+ +A++H I+HA K L FL
Sbjct: 304 LGATLALAQKDIKRGLAYSTMSQLGYIMLALGMGS---YRSALFHLITHAYSKALLFLGS 360
Query: 352 ATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I Y K++ F GGL + +P T T + LSL GIPPL F SK I
Sbjct: 361 GSVIHSMETLVGYSPKKSQNMVFMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEI 420
Query: 403 FEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAP 452
+ PI + + + + Y+ R + G ++ K+ P
Sbjct: 421 LNDTWLYS-PIFAIIAWSTAGLTAFYMFRIYLLTFEGHLNVHFQNYKNTP 469
>gb|AAF27228.1|AF111748_1 (AF111748) NADH dehydrogenase [Brachychiton acerifolius]
Length = 700
Score = 150 bits (375), Expect = 4e-35
Identities = 110/358 (30%), Positives = 177/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+ G+++ L I S++ VG+ ++ + GY FA MSL T LG+ T+
Sbjct: 83 FEFGYLIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 142
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 143 NLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGILGFYWITGS 202
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L L K+ FPLHVW PDA
Sbjct: 203 FEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFPLHVWLPDAMEG 256
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 257 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 302
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 303 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLG 359
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 360 SGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSK 417
>gb|AAF27233.1|AF111754_1 (AF111754) NADH dehydrogenase [Hildegardia barteri]
Length = 691
Score = 150 bits (375), Expect = 4e-35
Identities = 110/358 (30%), Positives = 177/358 (48%), Gaps = 44/358 (12%)
Query: 63 FKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
F+LG+++ L I S++ VG+ ++ + GY FA MSL T LG+ T+
Sbjct: 83 FELGYLIDSLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMSLFNTSMLGLVTSS 142
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+ I Y TGS
Sbjct: 143 NLIQIYIFWELVGMCSYLLIGFWFTRPAATNACQKAFVTNRIGDFGLLLGILGFYWITGS 202
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F F D+ F + + L V L L K+ FPLH W PDA
Sbjct: 203 FEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFPLHAWLPDAMEG 256
Query: 234 TDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
I + + AG++ + L+I++ P +I+ +G +T+
Sbjct: 257 PTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGIITV 302
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ AA++H I+HA K L FL
Sbjct: 303 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRAALFHLITHAYSKALLFLG 359
Query: 351 VATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
++I Y K++ F GGL + +P T + LSL GIPPL F SK
Sbjct: 360 SGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFWSK 417
>pir||T12629 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - bugle
chloroplast (fragment) >gi|1081985|gb|AAA84012.1|
(L36391) NADH dehydrogenase subunit [Ajuga reptans]
Length = 698
Score = 149 bits (372), Expect = 1e-34
Identities = 115/389 (29%), Positives = 195/389 (49%), Gaps = 45/389 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 76 EFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLVTSSN 135
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G +++L+ I Y TGSF
Sbjct: 136 LIQIYIFWELVGVCSYLLIGFWFTRPPAASACQKAFVTNRVGDFSLLLGILGFYWITGSF 195
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ E ++ ++ LLF A K+ FPLHVW PDA
Sbjct: 196 EFRDLF-----EILNNLIYNNEVNFPFVTLCAALLFAGAVA-KSSQFPLHVWLPDAMEGP 249
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L ++ P +I+++G +T+++G
Sbjct: 250 TPISALIXAATMVAAGI--FLVARLLPLFVVI---------PYIMNLISWIGVITLLLGA 298
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL ++
Sbjct: 299 TLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLGSGSV 355
Query: 355 I--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I Y K++ F GGL + +P T T F+ LSL GIPPL F SK +
Sbjct: 356 IHSMETIVGYSPDKSQNMVFMGGLTKHVPITKTSFFLGTLSLCGIPPLACFWSK----DE 411
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIR 431
+++ + PI + +F + + Y+ R
Sbjct: 412 ILNDSWFYSPIFAIIAWFTAGLTAFYMFR 440
>pir||T14236 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Synechococcus sp. (strain PCC 7002)
>gi|2232047|gb|AAB62185.1| (U97516) NADH dehydrogenase
subunit 4 [Synechococcus PCC7002]
Length = 498
Score = 149 bits (372), Expect = 1e-34
Identities = 106/400 (26%), Positives = 198/400 (49%), Gaps = 41/400 (10%)
Query: 53 GVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTGAL 112
G++Y + V G L ++ LN + +++A +G + Y L L++ +G
Sbjct: 66 GLNYNLGVDGLSLPLIV--LNSLLTLVAIYS-----IGESNHRPKLYYSLILLIN-SGIT 117
Query: 113 GIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA----ASLKYFLLSIMGAYAMLVA-IGLI 167
G A +L++FF+F+EI ++++ + AS K+ + + + +L A +G++
Sbjct: 118 GALIANNLLLFFLFYEIELIPFYLLIAIWGGEKKGYASTKFLIYTAISGLCVLAAFLGIV 177
Query: 168 Y-AKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVW 226
+ +++ +F F +++ L +K+ ++ + L+ FG+K + PLH W
Sbjct: 178 WLSQSSNFDFENLT-----------LENLEFNTKV---ILLTILLIGFGIKIPLVPLHTW 223
Query: 227 APDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLG 286
PDAY E + + T + GV +K G YG + + ++ + + +PA +A +G
Sbjct: 224 LPDAYVEANPAVTVLLGGVFAKLGTYGLVRFGLQLFPDVWSTV-----SPA----LAVIG 274
Query: 287 GLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGL 346
++++ G + A Q D++R+ AYSSI +GYILV GT L + A+ ISH+L L
Sbjct: 275 TVSVMYGSLAAIAQRDLKRMVAYSSIGHMGYILVSTAAGTELSLLGAVAQMISHSLILAL 334
Query: 347 FFLIVATLIYRTGKTEFKDFGGL---AEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIF 403
F +V + + G + GL +P T ++ +A ++ AGIP LVGF +++L+F
Sbjct: 335 LFHLVGIIERKVGTRDLDVLNGLMNPVRGLPLTSSLLILAGMASAGIPGLVGFVAEFLVF 394
Query: 404 EAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPS 443
+ S+ PI S + VY + FG+ S
Sbjct: 395 QGSFSR-FPIPTLFCIIASGLTAVYFVILLNRTCFGRLDS 433
>pir||G64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 [similarity] -
Helicobacter pylori (strain 26695)
>gi|2314436|gb|AAD08315.1| (AE000631) NADH-ubiquinone
oxidoreductase, NQO12 subunit (NQO12) [Helicobacter
pylori 26695]
Length = 612
Score = 149 bits (372), Expect = 1e-34
Identities = 134/493 (27%), Positives = 222/493 (44%), Gaps = 53/493 (10%)
Query: 2 NELLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGAL---IPLIGLIKLYPSLGQGVSYT- 57
+ LL V+F PL+ A LF K +GV +L + IG + L+ SY
Sbjct: 4 SSLLSVVLFLPLIGAIYAGLFGAKAKALHVGVFNSLCVLVSFIGAVVLFIQAWHHQSYEK 63
Query: 58 -----ITVGGFKLGF--MMSHLNWIFSMIAAVVGVSAILGMVSTA----KDGYEWLFALM 106
I VG FK+GF M+ ++N + MI V VS ++ + S G+ F+ +
Sbjct: 64 YLFDWIVVGNFKVGFSLMLDNINAV--MIVVVTLVSFLVHVYSIGYMEHDAGFNRYFSYL 121
Query: 107 S--LTGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYA 159
S + L + + + + FI WE + S++++ +++ AS++ F+++ +
Sbjct: 122 SGFVFSMLVLVLSDNFLGLFIGWEGVGLCSYLLIGFWYHKTSANNASIEAFVMNRITDLG 181
Query: 160 MLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAG 219
ML+ I LI+ G+ + + V +ML T +S L ++L F+ A G K+
Sbjct: 182 MLMGIILIFWNFGTLQYKE---------VFSMLNNTD-YSMLFYISVFL-FIGAMG-KSA 229
Query: 220 MFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAP-AF 278
FP+H W +A I + + AGVY L+I + SA
Sbjct: 230 QFPMHTWLANAMEGPTPVSALIHAATMVTAGVY------------LVIRANPLYSAVFEV 277
Query: 279 GYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAI 338
GY IA LG + G +A + +D++R+ AYS++SQ+GY+ V G+G A++H
Sbjct: 278 GYFIACLGAFVALFGASMALVNKDLKRIVAYSTLSQLGYMFVAAGLG---AYAIALFHLF 334
Query: 339 SHALFKGLFFLIVATLIY-RTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFA 397
+HA FK L FL +++ + G L + M T I ++L GI P G+
Sbjct: 335 THAFFKSLLFLGSGNVMHAMEDNLDITKMGALYKPMRITAVFMIIGSVALCGIYPFAGYF 394
Query: 398 SKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAI 457
SK I E + IL + G+ Y R V+F + +I +A + +
Sbjct: 395 SKDKILEVAFGMHHHILWFALLIGAIFTAFYSFRLIMLVFFAPKQHEINHPHEAQNFMLL 454
Query: 458 GMAILGTLNVVFG 470
M LG L V+ G
Sbjct: 455 SMLPLGVLAVIAG 467
>gb|AAF08178.1| (AF130222) NADH dehydrogenase subunit F [Heuchera micrantha]
Length = 736
Score = 149 bits (372), Expect = 1e-34
Identities = 112/367 (30%), Positives = 180/367 (48%), Gaps = 45/367 (12%)
Query: 55 SYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--T 109
S+TIT + G ++ L I ++ VG+ ++ + GY FA MS T
Sbjct: 65 SWTITNDFSLEFGHLIDPLTSIMLILITTVGIMVLIYSDNYMSHDQGYLRFFAYMSFFST 124
Query: 110 GALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAI 164
LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I
Sbjct: 125 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRIGDFGLLLGI 184
Query: 165 GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLH 224
+Y TGSF F D+ F + + + + L V L L K+ FPLH
Sbjct: 185 LGLYWITGSFEFRDLFEIFNNLSYNNEV------NLLFVTLCAFLLFSGAVAKSAQFPLH 238
Query: 225 VWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYV 281
VW PDA I + + AG++ + L+I++ P +
Sbjct: 239 VWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNL 284
Query: 282 IAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHA 341
I+F+G +T+ +G LA Q+DI+R AYS++SQ+GY+++ LG+G+ A++H I+HA
Sbjct: 285 ISFIGIITVFLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRTALFHLITHA 341
Query: 342 LFKGLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPP 392
K L FL ++I+ G + K GGL + +P T T F+ LSL GIPP
Sbjct: 342 FSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFFLGTLSLCGIPP 401
Query: 393 LVGFASK 399
L F SK
Sbjct: 402 LACFWSK 408
>gb|AAF08896.1|AF194865_1 (AF194865) NADH dehydrogenase [Ullucus tuberosus]
Length = 697
Score = 149 bits (372), Expect = 1e-34
Identities = 116/389 (29%), Positives = 190/389 (48%), Gaps = 43/389 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I SM+ V + ++ + GY FA MS T LG+ T+ +
Sbjct: 64 EFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSCFNTSMLGLVTSSN 123
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I IY TGSF
Sbjct: 124 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWITGSF 183
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F ++ + +LLF A K+ FPLHVW PDA
Sbjct: 184 EFRDLFEIFNN---LNLINTNEIHFLFCILCTFLLFTGAVA-KSAQFPLHVWLPDAMEGP 239
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L ++ P I+F+G +T+++G
Sbjct: 240 TPISALIHAATMVAAGI--FLVARLLPLFVVI---------PYIMNWISFIGIITVLLGA 288
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LGIG+ AA++H I+HA K L FL ++
Sbjct: 289 TLALAQKDIKRSLAYSTMSQLGYMMLALGIGS---YRAALFHLITHAYSKALLFLGSGSV 345
Query: 355 IYRT----GKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K GGL + +P T I LSL GIPPL F SK +
Sbjct: 346 IHSMEAIGGYSPDKSHNMVLMGGLTKHVPITKNAFLIGTLSLCGIPPLACFWSK----DE 401
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIR 431
+++ + PI + +F + + Y+ R
Sbjct: 402 ILNDSWLYSPIFAIIAYFTAGLTAFYMFR 430
>sp|Q9JX92|NUOL_NEIMA NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
L) >gi|11254387|pir||F81990 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain L NMA0002 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7378780|emb|CAB83322.1| (AL162752) NADH
dehydrogenase I chain L [Neisseria meningitidis Z2491]
Length = 674
Score = 149 bits (372), Expect = 1e-34
Identities = 135/472 (28%), Positives = 217/472 (45%), Gaps = 49/472 (10%)
Query: 1 MNELLLAVIFS--PLVAGFLAWLFNVKGIREGIGVIGAL-IPLIGLIKLYPSLG------ 51
MN++ L +I + PL +A LF K R G + L + + ++ Y G
Sbjct: 1 MNDMTLYLIIALVPLAGSLIAGLFGNKIGRAGAHTVTILGVAVSAVLSAYVLWGFLNGSR 60
Query: 52 ----QGVSYTITVGG--FKLGFMMSHLNWIFSMIAAVVGVSAI-----LGMVSTAKDGYE 100
+ V +T+GG F +GF++ + + M+ V GVS + +G + K GY+
Sbjct: 61 AKFDENVYTWLTMGGLDFSVGFLVDTMTAM--MMVVVTGVSLMVHIYTIGYMHDEKVGYQ 118
Query: 101 WLFALMSLT--GALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLS 153
F+ +SL L + + + + F WE + S++++ F R A+LK FL++
Sbjct: 119 RFFSYISLFTFSMLMLIMSNNFIQLFFGWEAVGLVSYLLIGFYFKRPSATFANLKAFLIN 178
Query: 154 IMGAYAMLVAIGLIYAKTG-SFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLL 212
+G + L+ IGL+ A G S + D+ A+ +T+ L LLF+
Sbjct: 179 RVGDFGFLLGIGLVLAYFGGSLRYQDVFAYLPNVQNATIQLFPGVEWSLITVTCLLLFVG 238
Query: 213 AFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQV 272
A G K+ FPLHVW PD+ I + + AG L+++ + ++
Sbjct: 239 AMG-KSAQFPLHVWLPDSMEGPTPISALIHAATMVTAG------LFMVSRMSPIYEMSST 291
Query: 273 RSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEA 332
+ VI +G +T + G L +Q DI+R+ AYS++SQ+GY+ V LG +
Sbjct: 292 ALS-----VIMVIGAITALFMGFLGVIQNDIKRVVAYSTLSQLGYMTVALG---ASAYSV 343
Query: 333 AIYHAISHALFKGLFFLIV-ATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIP 391
A++H ++HA FK L FL + +I + + G L + MP T+ I LSL G P
Sbjct: 344 AMFHVMTHAFFKALLFLAAGSAIIGMHHDQDMRHMGNLKKYMPITWLTMLIGNLSLIGTP 403
Query: 392 PLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFV---YLIRFTYAVWFGQ 440
GF SK I EA LP G F A FV Y R + V+ G+
Sbjct: 404 FFSGFYSKDSIIEAAKYSTLPGSGFAYFAVLASVFVTAFYAFRQYFMVFHGE 455
>pir||E81251 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain M Cj1567c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968984|emb|CAB73555.1| (AL139079) NADH
dehydrogenase I chain M [Campylobacter jejuni]
Length = 495
Score = 148 bits (371), Expect = 1e-34
Identities = 120/458 (26%), Positives = 218/458 (47%), Gaps = 44/458 (9%)
Query: 4 LLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTITVGGF 63
+L +IF PL++ F+ L N G++ V+ +I + L ++ QGVS+ +
Sbjct: 1 MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNL-DIFADFLQGVSFDYNLSFK 59
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLF------ALMSLT-----GAL 112
L F FS V ++ +L ++S+ +LF AL+S +
Sbjct: 60 ILKF--------FSFHVGVDSIALVLILLSSLMIFLSFLFLKLEQKALISCIFFLEFAIM 111
Query: 113 GIFTAQDLVVFFIFWE--IMTFASFMMVLKFNRAASLKYFLLSIMGAYAMLVAIGLIYAK 170
G+F+A+D ++F++FWE ++ M V + A +K+F+ + G+ MLVA LIY
Sbjct: 112 GLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSILMLVA--LIYQA 169
Query: 171 TGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDA 230
++ +I F + A + + L++ F +AF +KA +FPLH WAP
Sbjct: 170 YLNYQLLNIFTF----DLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPLHTWAPKV 225
Query: 231 YSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTI 290
Y+ + + + V+ K +GF+L + ++ + F +I L ++I
Sbjct: 226 YANSPILVSVML--VVFKMAPFGFLLFCLPLFPDASV---------YFMPLIVALCIVSI 274
Query: 291 IVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLI 350
+ ++A E+I+ L AYSSIS +G +++G+ +LGI A+++ +H + G FL+
Sbjct: 275 VYNALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM 334
Query: 351 VATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQN 410
V L R + + LA+K P + +L+ +P V F ++LI + N
Sbjct: 335 VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAKIN 394
Query: 411 L--PILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIE 446
L +L G+V +G +Y+ ++F Q+ S IE
Sbjct: 395 LFYALLAGLVII---LGAIYMFAVFRKIFFMQKQSFIE 429
>sp|Q9K1B0|NUOL_NEIMB NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
L) >gi|11254391|pir||D81220 NADH dehydrogenase I, L
chain NMB0257 [imported] - Neisseria meningitidis (group
B strain MD58) >gi|7225480|gb|AAF40711.1| (AE002382)
NADH dehydrogenase I, L subunit [Neisseria meningitidis
MC58]
Length = 674
Score = 148 bits (371), Expect = 1e-34
Identities = 135/472 (28%), Positives = 217/472 (45%), Gaps = 49/472 (10%)
Query: 1 MNELLLAVIFS--PLVAGFLAWLFNVKGIREGIGVIGAL-IPLIGLIKLYPSLG------ 51
MN++ L +I + PL +A LF K R G + L + + ++ Y G
Sbjct: 1 MNDMTLYLIIALVPLAGSLIAGLFGNKIGRAGAHTVTILGVAVSAVLSAYVLWGFIDGSR 60
Query: 52 ----QGVSYTITVGG--FKLGFMMSHLNWIFSMIAAVVGVSAI-----LGMVSTAKDGYE 100
+ V +T+GG F +GF++ + + M+ V GVS + +G + K GY+
Sbjct: 61 AKFDENVYTWLTMGGLDFSVGFLVDTMTAM--MMVVVTGVSLMVHIYTIGYMHDEKVGYQ 118
Query: 101 WLFALMSLT--GALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLS 153
F+ +SL L + + + + F WE + S++++ F R A+LK FL++
Sbjct: 119 RFFSYISLFTFSMLMLIMSNNFIQLFFGWEAVGLVSYLLIGFYFKRPSATFANLKAFLIN 178
Query: 154 IMGAYAMLVAIGLIYAKTG-SFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLL 212
+G + L+ IGL+ A G S + D+ A+ +T+ L LLF+
Sbjct: 179 RVGDFGFLLGIGLVLAYFGGSLRYQDVFAYLPNVQNATIQLFPGVEWSLITVTCLLLFVG 238
Query: 213 AFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQV 272
A G K+ FPLHVW PD+ I + + AG L+++ + ++
Sbjct: 239 AMG-KSAQFPLHVWLPDSMEGPTPISALIHAATMVTAG------LFMVSRMSPIYEMSST 291
Query: 273 RSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEA 332
+ VI +G +T + G L +Q DI+R+ AYS++SQ+GY+ V LG +
Sbjct: 292 ALS-----VIMVIGAITALFMGFLGVIQNDIKRVVAYSTLSQLGYMTVALG---ASAYSV 343
Query: 333 AIYHAISHALFKGLFFLIV-ATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIP 391
A++H ++HA FK L FL + +I + + G L + MP T+ I LSL G P
Sbjct: 344 AMFHVMTHAFFKALLFLAAGSAIIGMHHDQDMRHMGNLKKYMPVTWLTMLIGNLSLIGTP 403
Query: 392 PLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFV---YLIRFTYAVWFGQ 440
GF SK I EA LP G F A FV Y R + V+ G+
Sbjct: 404 FFSGFYSKDSIIEAAKYSTLPGSGFAYFAVLASVFVTAFYAFRQYFMVFHGE 455
>gb|AAF44108.1| (AF230249) NADH dehydrogenase [Durio griffithii]
Length = 704
Score = 148 bits (371), Expect = 1e-34
Identities = 114/369 (30%), Positives = 180/369 (47%), Gaps = 45/369 (12%)
Query: 53 GVSYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL- 108
G S+TI F+ G+ + L I S++ VG+ ++ + GY FA MSL
Sbjct: 72 GWSWTINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLF 131
Query: 109 -TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLV 162
T LG+ T+ +L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+
Sbjct: 132 NTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLL 191
Query: 163 AIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFP 222
I Y TGSF F D+ F + + L V L L K+ FP
Sbjct: 192 GILGFYWITGSFEFQDLFEIFNNLIYNNEV------HFLFVTLCASLLFAGAVAKSAQFP 245
Query: 223 LHVWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFG 279
LHVW PDA I + + AG++ + L+I++ P
Sbjct: 246 LHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIM 291
Query: 280 YVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAIS 339
+I+ +G +T+++G LA Q+DI+R AYS++SQ+GY++ LG+G+ AA++H I+
Sbjct: 292 NLISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMGALGMGS---YRAALFHLIT 348
Query: 340 HALFKGLFFLIVATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGI 390
HA K L FL ++I Y K++ F GGL + +P T + LSL GI
Sbjct: 349 HAYSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGI 408
Query: 391 PPLVGFASK 399
PPL F SK
Sbjct: 409 PPLACFWSK 417
>pir||H81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain M NMA2229
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7380848|emb|CAB85440.1| (AL162758) NADH
dehydrogenase chain M [Neisseria meningitidis Z2491]
Length = 498
Score = 148 bits (371), Expect = 1e-34
Identities = 129/504 (25%), Positives = 224/504 (43%), Gaps = 64/504 (12%)
Query: 2 NELLLAVIFSPLVAGFLAWLFNVKGIREGI-------GVIGALIPLIGLIKLYPSLGQG- 53
N LL I+ P+ AG L L K R + G + + + L + L G
Sbjct: 4 NHLLSLAIWIPIAAGVLV-LATGKDSRAPLARVLAFMGALAGFLVTLPLFTGFDRLSGGY 62
Query: 54 -------------VSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYE 100
++Y + V G + F++ LN +++ + G I K +
Sbjct: 63 QFTEFHEWIPLLKINYALGVDGISVLFII--LNAFITLLVVLAGWEVI------QKRPAQ 114
Query: 101 WLFALMSLTGAL-GIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA----ASLKYFLLSIM 155
++ A + ++G + G F AQD ++F++F+E M ++++ + AS+K FL ++M
Sbjct: 115 YMAAFLIMSGLINGAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVYASVKLFLYTLM 174
Query: 156 GAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFG 215
G+ MLVA+ +Y +TGSFS D + + + G L++ F L+F
Sbjct: 175 GSLLMLVAMVYLYYQTGSFSIVDF------QNIKQIPLGVQQ-------LLFAAFFLSFA 221
Query: 216 VKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSA 275
VK MFP+H W PDA+ E + + + + K G YGF L +IL ++ D +A
Sbjct: 222 VKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLKLGAYGF-LRFIL---PIMPD-----AA 272
Query: 276 PAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGL-----GIGTSLGI 330
F VI L + +I G++A +Q D+++L AYSSIS +G++ +G+ G +
Sbjct: 273 RYFAPVIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVNGQLNDWAL 332
Query: 331 EAAIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGI 390
+ AI ISH F+ + + R D+GG+ MP + ++ AG+
Sbjct: 333 KGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGL 392
Query: 391 PPLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQ-RPSDIEDTK 449
P GF ++++ + N + G + G Y + V FG S + + K
Sbjct: 393 PATSGFVGEFMVIMGAVKVNFWV-GALAAMTLIYGASYTLWMYKRVIFGAIHNSHVAEMK 451
Query: 450 DAPLPLAIGMAILGTLNVVFGVAP 473
D +A+L + G+ P
Sbjct: 452 DINCREFAILAVLAVAVLGMGLYP 475
>sp|P50974|NUOM_RHOCA NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
M) >gi|3282578|gb|AAC25004.1| (AF029365) NUOM
[Rhodobacter capsulatus] >gi|1586527|prf||2204231H NADH
ubiquinone oxidoreductase [Rhodobacter capsulatus]
Length = 512
Score = 148 bits (370), Expect = 2e-34
Identities = 103/393 (26%), Positives = 179/393 (45%), Gaps = 29/393 (7%)
Query: 53 GVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTGAL 112
G+ Y + V G + F+M F M + + V + L ALM +
Sbjct: 74 GLHYKLGVDGISILFVMLTT---FLMPLTIASAWHVETRVKEYMIAFLVLEALM-----I 125
Query: 113 GIFTAQDLVVFFIFWEIMTFASFMMVL----KFNRAASLKYFLLSIMGAYAMLVAIGLIY 168
G+F A DLV+F++F+E F+++ K A+ K+FL + +G+ MLVA+ +Y
Sbjct: 126 GVFVALDLVLFYLFFEAGLIPMFLIIGIWGGKERIYAAFKFFLYTFLGSVLMLVAMVAMY 185
Query: 169 AKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAP 228
G+ + +F A LG + L++L F +F VK M+P+H W P
Sbjct: 186 MMAGTTDIVTLMSFDFPHADLPFLGWWTLTGGVQT-LLFLAFFASFAVKMPMWPVHTWLP 244
Query: 229 DAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGL 288
DA+ + + + + + VL K G YGF+ + M+ A + L +
Sbjct: 245 DAHVQAPTAGSVVLAAVLLKMGGYGFLRFSLPMFPV---------GAETMTTFVFILSAV 295
Query: 289 TIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFF 348
I+ ++A QED+++L AYSS++ +GY+ +G+ G++ AI+ +SH G F
Sbjct: 296 AIVYTSLVALAQEDMKKLIAYSSVAHMGYVTMGIFAANQQGVDGAIFQMLSHGFISGALF 355
Query: 349 LIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVIS 408
L V + R E +GGL +MP + ++ G+P GF ++L +
Sbjct: 356 LCVGVIYDRMHTREIAAYGGLVNRMPAYALIFMFFTMANVGLPGTSGFVGEFLTLLGIFQ 415
Query: 409 QNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQR 441
N + +F S + ++ YA+W +R
Sbjct: 416 VNTWV---ALFATSGV----ILSAAYALWLYRR 441
>pir||E81220 NADH dehydrogenase I, M chain NMB0258 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225481|gb|AAF40712.1| (AE002382) NADH dehydrogenase
I, M subunit [Neisseria meningitidis MC58]
Length = 498
Score = 148 bits (370), Expect = 2e-34
Identities = 105/398 (26%), Positives = 191/398 (47%), Gaps = 47/398 (11%)
Query: 54 VSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTGAL- 112
++Y + V G + F++ LN +++ + G I K +++ A + ++G +
Sbjct: 76 INYALGVDGISVLFII--LNAFITLLVVLAGWEVI------QKRPAQYMAAFLIMSGLIN 127
Query: 113 GIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA----ASLKYFLLSIMGAYAMLVAIGLIY 168
G F AQD ++F++F+E M ++++ + AS+K FL ++MG+ MLVA+ +Y
Sbjct: 128 GAFAAQDAILFYVFFEGMLIPLYLIIGVWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLY 187
Query: 169 AKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAP 228
+TGSFS D + + + G L+++ F L+F VK MFP+H W P
Sbjct: 188 YQTGSFSIVDF------QNIEQIPLGVQQ-------LLFVAFFLSFAVKVPMFPVHTWLP 234
Query: 229 DAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGL 288
DA+ E + + + + K G YGF L +IL ++ D +A F VI L +
Sbjct: 235 DAHVEAPTGGSMVLAAITLKLGAYGF-LRFIL---PIMPD-----AARYFAPVIIVLSLI 285
Query: 289 TIIVGGILAALQEDIRRLFAYSSISQVGYILVGL-----GIGTSLGIEAAIYHAISHALF 343
+I G++A +Q D+++L AYSSIS +G++ +G+ G ++ AI ISH
Sbjct: 286 AVIYIGMVALVQTDMKKLVAYSSISHMGFVTLGMFLFVDGQLDDWALKGAIIQMISHGFV 345
Query: 344 KGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIF 403
F+ + + R D+GG+ MP + ++ AG+P GF ++++
Sbjct: 346 SAAMFMCIGVMYDRLHTRNIADYGGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMVI 405
Query: 404 EAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQR 441
+ N + G+ + +Y +W +R
Sbjct: 406 MGAVKVNF-------WVGALAAMTLIYGASYTLWMYKR 436
>emb|CAB85647.1| (AJ238338) NADH dehydrogenase [Crispiloba disperma]
Length = 742
Score = 148 bits (370), Expect = 2e-34
Identities = 117/396 (29%), Positives = 187/396 (46%), Gaps = 52/396 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ + GY FA MS T LG+ + +
Sbjct: 84 EFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSQDRGYLKFFAYMSFFSTSMLGLVISSN 143
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y TGSF
Sbjct: 144 LIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSF 203
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + + + L V L +L K+ FPLH+W PDA
Sbjct: 204 EFRDLFQIFNSLIYNNQV------NLLFVTLCAVLLFAGAVAKSAQFPLHIWLPDAMEGP 257
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG++ L L R P +I+ +G +T+ +G
Sbjct: 258 TPISALIHAATMVAAGIFLVARLMPLF-----------RVIPHIMNLISLMGIITVFLGA 306
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL ++
Sbjct: 307 TLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLGSGSI 363
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK------ 399
I+ G + K GGL + +P T T F+ LSL GIPPL F SK
Sbjct: 364 IHSMETIVGYSPEKSQNMVLMGGLTKHVPITKTAFFLGTLSLCGIPPLACFWSKDEILND 423
Query: 400 -WLI--FEAVISQNLPILGGMVFFGSAIGFVYLIRF 432
WL F A+I+ + L F +YL+ F
Sbjct: 424 SWLYSPFFAIIAWSTAGLTAFYLFR-----IYLLTF 454
>gb|AAG19146.1| (AE005012) F420H2:quinone oxidoreductase chain M; NuoM
[Halobacterium sp. NRC-1]
Length = 519
Score = 148 bits (370), Expect = 2e-34
Identities = 121/471 (25%), Positives = 213/471 (44%), Gaps = 46/471 (9%)
Query: 36 ALIPLIGLIKLYPSL-GQG-------------VSYTITVGGFKLGFMMS--HLNWIFSMI 79
+L+P++G + ++ G G +++ IT+G + L + + ++ ++
Sbjct: 33 SLLPVVGSVWMFVQFDGSGNALLEGGSLAFETMTHWITIGPYTLNWHVGIDGISMPLVVL 92
Query: 80 AAVVGVSAILGMVSTAKDGYEWLFALMSLTGA--LGIFTAQDLVVFFIFWEIMTFASFMM 137
+ V+ AI + + +ALM L A LG+FTA D V+F+FWE + + +
Sbjct: 93 STVLTTLAITSAWTPIDERQSQFYALMLLMEASLLGVFTALDFFVWFVFWEFVLVPMYFL 152
Query: 138 VLKFN----RAASLKYFLLSIMGAYAMLVA-IGLIYAKTGSFSFSDISAFFGKEAVSTML 192
+ + + A++K+F+ + + + M + + L++ + D+ A +A+
Sbjct: 153 IGIWGGPRRKYAAIKFFVYTNVASLLMFIGFMALVFGL--DVTTMDMPAI--AQAIHAGQ 208
Query: 193 GGTP---AFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKA 249
GT L + +F+ F VK PLH W PDA+ + + + +GVL K
Sbjct: 209 FGTTYGLGAETLKTVAFFAMFI-GFAVKVPTVPLHTWLPDAHVQAPTPASVMLAGVLLKM 267
Query: 250 GVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAY 309
G Y + M + A + IA L L++I G +LA Q D++R+ AY
Sbjct: 268 GTYALLRFNFTMMPGI---------AQQYAVPIAALAVLSVIYGAMLALAQRDLKRIVAY 318
Query: 310 SSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYRTGKTEF-KDFGG 368
SS+S +GY+++GL G+ A + ++H L GL F+ V +IY T T D G
Sbjct: 319 SSVSSMGYVILGLVAYNYYGVGGATFQMVAHGLISGLMFMCVG-VIYNTAHTRMVGDLSG 377
Query: 369 LAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNL---PILGGMVFFGSAIG 425
+A+KMP T + A G+P + GFA + IF + + + FG I
Sbjct: 378 IADKMPVTAAVFIAAAFGYMGLPLMAGFAGELFIFLGGFGADFAHAQLFTALAMFGIVIV 437
Query: 426 FVYLIRFTYAVWFGQRPSDIE-DTKDAPLPLAIGMAILGTLNVVFGVAPGI 475
YL+ V FG ++ + D A L + + L L +V G P +
Sbjct: 438 AGYLLFAMQRVLFGPFAAETDYDIVPAALHDTVPIVALLLLVIVAGTVPNV 488
>gb|AAF37197.1| (AF191808) NADH dehydrogenase subunit F [Carex dioica]
Length = 664
Score = 148 bits (369), Expect = 2e-34
Identities = 117/395 (29%), Positives = 191/395 (47%), Gaps = 50/395 (12%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSLTGA--LGIFTAQD 119
+ G+++ L I + VG++ + + Y FA ++L A G+ T+ +
Sbjct: 68 EFGYLIDSLTSIMLTLITTVGITVFIYSDNYMSHDQAYLRFFAYLNLFNASMFGLVTSSN 127
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWEI+ S++++ F R A K F+ + +G + +L+ I Y GSF
Sbjct: 128 LIQVYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGXFGLLLGILGFYWIIGSF 187
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ E + ++ S L +LLF+ A K+ FPLH+W PDA
Sbjct: 188 EFRDLF-----EITNNLIQKNGLNSLLTTLCTFLLFVGAIA-KSAQFPLHIWLPDAMEGP 241
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AGV+ L+ L+ ++I+ +G +T+ +G
Sbjct: 242 TPVSALIHAATMVAAGVFLVARLFPLL-----------SITSNIMHIISSIGLITLFLGA 290
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q DI+R AYS++SQ+GYI++ LGIG+S A++H I+HA K L FL ++
Sbjct: 291 TLALAQIDIKRSLAYSTMSQLGYIILALGIGSS---RTALFHLITHAYSKALLFLGSGSI 347
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + +K+ GGL + +P T T + LSL GIPPL F SK +
Sbjct: 348 IHSMEPIVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSK----DE 403
Query: 406 VISQN---LPILGGMVFFGSAIG-----FVYLIRF 432
++S + PI G + +F + + VYLI F
Sbjct: 404 ILSNSWLYSPIFGIITYFTTGLTAFYMFXVYLINF 438
>gb|AAF44117.1| (AF230258) NADH dehydrogenase [Coelostegia borneensis]
Length = 699
Score = 148 bits (369), Expect = 2e-34
Identities = 114/369 (30%), Positives = 180/369 (47%), Gaps = 45/369 (12%)
Query: 53 GVSYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL- 108
G S+TI F+ G+ + L I S+ VG+S ++ + GY FA MSL
Sbjct: 72 GWSWTINNDFSFEFGYFIDSLTSIMSIXITTVGISVLIYSDNYMSHDQGYLRFFAYMSLF 131
Query: 109 -TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLV 162
T LG+ T+ +L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+
Sbjct: 132 NTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLL 191
Query: 163 AIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFP 222
I Y TGSF F D+ F + + L V L L K+ FP
Sbjct: 192 GILGFYWITGSFEFQDLFEIFNNLIYNNEV------HYLFVTLCASLLFAGAVAKSAQFP 245
Query: 223 LHVWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFG 279
LH W PDA I + + AG++ + L+I++ P+
Sbjct: 246 LHGWLPDAMEGPTPISALIHAASMVAAGIFLVARLLPLFIVI--------------PSIM 291
Query: 280 YVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAIS 339
+I+ +G +T+++G LA Q+D+ R AYS++SQ+GY++V LG+G+ AA++H I+
Sbjct: 292 NLISLIGIITVLLGATLALAQKDMLRGLAYSTMSQLGYMMVALGMGS---YRAALFHLIT 348
Query: 340 HALFKGLFFLIVATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGI 390
HA K L FL ++I Y K++ F GGL + +P T + LSL GI
Sbjct: 349 HAYSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGI 408
Query: 391 PPLVGFASK 399
PPL F SK
Sbjct: 409 PPLACFWSK 417
>gb|AAF08158.1| (AF130202) NADH dehydrogenase subunit F [Acanthopanax
sessiliflorus]
Length = 741
Score = 147 bits (368), Expect = 3e-34
Identities = 117/410 (28%), Positives = 195/410 (47%), Gaps = 45/410 (10%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ + GY FA MS T LG+ T+ +
Sbjct: 84 EFGYLIDPLTSIMSILITTVGIVVLVYSDNYMSHDQGYLRFFAYMSFFSTSMLGLVTSSN 143
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y TGSF
Sbjct: 144 LIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSF 203
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + + + L V L +L K+ FPLHVW PDA
Sbjct: 204 EFRDLFKIFSNLIYNNEV------NFLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGP 257
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AG++ I L+I++ P +I+ +G +T++
Sbjct: 258 TPISALIHAATMVAAGIFLVARLIPLFIVI--------------PHIMNLISLVGIITVL 303
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL
Sbjct: 304 LGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLGS 360
Query: 352 ATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I Y K++ F GGL + +P T T + LSL GIPPL F SK I
Sbjct: 361 GSVIHSMETLVGYSPKKSQNMVFMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEI 420
Query: 403 FEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAP 452
+ PI + + + + Y+ R + G ++ K+ P
Sbjct: 421 LNDTWLYS-PIFAIIAWSTAGLTAFYMFRIYLLTFEGHLNVHFQNYKNTP 469
>gb|AAF08142.1| (AF130186) NADH dehydrogenase subunit F [Cyananthus microphyllus]
Length = 696
Score = 147 bits (367), Expect = 4e-34
Identities = 115/405 (28%), Positives = 198/405 (48%), Gaps = 45/405 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAILGMVSTA--KDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I ++ VG+ ++ + GY F+ MS T LG+ T+ +
Sbjct: 75 EFGYLIDPLTSIMLILITTVGILVLIYSDNYMFYDRGYLRFFSYMSFFSTSMLGLVTSSN 134
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y TGSF
Sbjct: 135 LIQIYIFWELVGICSYLLIGFWFTRPVAANACQKAFITNRVGDFGLLLGILGFYWITGSF 194
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + + + L V L +L K+ FPLHVW PDA
Sbjct: 195 EFRDLFLIFNNLIYNNEV------NLLFVTLCAILLFSGAVAKSAQFPLHVWLPDAMEGP 248
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L I + + + I+ +G +T+ +G
Sbjct: 249 TPISALIHAATMVAAGI--FLVARLL---PLFIVIPHIMN------FISLIGIITVFLGA 297
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL ++
Sbjct: 298 TLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---FRSALFHLITHAYSKALLFLGSGSI 354
Query: 355 I--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I Y K++ F GGL + +P T T + LSL GIPPL F SK +
Sbjct: 355 IHSMQTIVGYSPNKSQNMVFMGGLTKHVPITKTTFLLGTLSLCGIPPLACFWSK----DE 410
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIED 447
+++ + PILG + F + + Y+ R + G + +++
Sbjct: 411 ILNDSWLYSPILGIIALFTAGLTAFYMFRIYLLTFEGHLNAHLQN 455
>gb|AAG19079.1| (AE005006) Vng0562c [Halobacterium sp. NRC-1]
Length = 489
Score = 147 bits (367), Expect = 4e-34
Identities = 102/401 (25%), Positives = 182/401 (44%), Gaps = 43/401 (10%)
Query: 60 VGGFKLGFMMSHLNWIFSMIAAVVGVSA-------ILGMVSTAKDGYEWLFALMSLTGAL 112
V G L L +F+++A+ + ++A + G+ ++ Y FA S+ A+
Sbjct: 19 VPGVSLALRADALGVLFALLASTLWLAASFYSIGYMRGLGEHSQTRYFAAFA-GSIASAI 77
Query: 113 GIFTAQDLVVFFIFWEIMTFASFMMVLKFN----RAASLKYFLLSIMGAYAMLVAIGLIY 168
+ A +LVV ++ +E++T A++ +V+ RAA KY + G A+L + L+Y
Sbjct: 78 AVAFAANLVVLYLAYELLTVATYPLVVHDETDAARAAGRKYLAYTFGGGVAVLAGVVLVY 137
Query: 169 AKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALI---YLLFLLAFGVKAGMFPLHV 225
TG+ +F+ GG + D L + L + FGVKA + PLH
Sbjct: 138 HATGTTAFAP--------------GGIGGLATADPTLARAAFGLLITGFGVKAALMPLHS 183
Query: 226 WAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFL 285
W PDA + + + K+GV+G + + +YG L+ V G +A +
Sbjct: 184 WLPDAMVAPTPVSGLLHAVAVVKSGVFGIARVLLDVYGIDLVAHLNV------GMAVAVV 237
Query: 286 GGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIG--------TSLGIEAAIYHA 337
+T+IV ++A Q++++R A+S++SQ+ YI++GL +G T + + H
Sbjct: 238 AAITLIVASVIALRQDNLKRRLAFSTVSQLSYIVLGLAVGAATPGADATKWALIGGLLHI 297
Query: 338 ISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFA 397
+HA K F L T + D G+ ++MP T T +A +AGIP + GF
Sbjct: 298 PAHAFMKLTLFFCAGALHVETHTDDISDMAGIGKRMPLTMTAFAVAAAGMAGIPLVAGFV 357
Query: 398 SKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWF 438
SK+ + ++ + + + Y Y +F
Sbjct: 358 SKYFLLIGTVTGGHLVFTAALLVSGVLNIAYFWPVVYTAFF 398
>sp|P31971|NU5C_SYNP2 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >gi|538864|pir||A40588
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Synechococcus sp. (PCC 7002) >gi|154516|gb|AAA27311.1|
(M99378) NADH dehydrogenase subunit 5 [Synechococcus
PCC7002]
Length = 664
Score = 146 bits (366), Expect = 5e-34
Identities = 114/398 (28%), Positives = 192/398 (47%), Gaps = 45/398 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAILGMVST----AKD-GYEWLFALMSL--TGALGIFT 116
++G+ + HL+ + S+I V A+L M+ T A D GY +A +S+ + LG+
Sbjct: 84 QMGYTVDHLSALMSVIVTTV---ALLVMIYTDGYMAHDPGYVRFYAYLSIFSSSMLGLVF 140
Query: 117 AQDLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKT 171
+ +LV +IFWE++ S++++ ++R A+ K F+ + +G + +L+ + +Y T
Sbjct: 141 SPNLVQVYIFWELVGMCSYLLIGFWYDRKAAADACQKAFVTNRVGDFGLLLGMLGLYWAT 200
Query: 172 GSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAY 231
GSF F G + L T S L + +L L K+ FPLHVW PDA
Sbjct: 201 GSFEFD----LMGDRLMD--LVSTGQISSLLAIVFAVLVFLGPVAKSAQFPLHVWLPDAM 254
Query: 232 SETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AGV+ +Y + P VIA+ G T
Sbjct: 255 EGPTPISALIHAATMVAAGVFLVARMYPVF-----------EPIPEAMNVIAWTGATTAF 303
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G +A Q DI++ AYS++SQ+GY+++ +GIG G A ++H ++HA FK + FL
Sbjct: 304 LGATIALTQNDIKKGLAYSTMSQLGYMVMAMGIG---GYTAGLFHLMTHAYFKAMLFLGS 360
Query: 352 ATLIYRTGKT---------EFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ + + + GGL + MP T T I L++ GIPP GF SK I
Sbjct: 361 GSVIHGMEEVVGHNAVLAQDMRLMGGLRKYMPITATTFLIGTLAICGIPPFAGFWSKDEI 420
Query: 403 FEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQ 440
N P+L + + + + Y+ R + + G+
Sbjct: 421 LGLAFEAN-PVLWFIGWATAGMTAFYMFRMYFLTFEGE 457
>gb|AAF08172.1| (AF130216) NADH dehydrogenase subunit F [Camellia japonica]
Length = 739
Score = 146 bits (366), Expect = 5e-34
Identities = 115/424 (27%), Positives = 197/424 (46%), Gaps = 51/424 (12%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ + GY FA MS T LG+ T+ +
Sbjct: 75 EFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQGYLRFFAYMSFFSTSMLGLVTSSN 134
Query: 120 LVVFFIFWEIMTFASFMMV-----LKFNRAASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ +S++++ F A K F+ + +G + +L+ I Y TGSF
Sbjct: 135 LIQIYIFWELVGMSSYLLIGFWFTRPFAANACQKAFVTNRVGDFGLLLGILGFYWITGSF 194
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + + + L V L +L K+ FPLHVW PDA
Sbjct: 195 EFRDLFEIFNNLIYNNEV------NLLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGP 248
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + G++ + L+I++ P +I+ +G +T+
Sbjct: 249 TPISALIHAATMVAGGIFLVARLLPLFIVI--------------PYIMNLISLIGIITVF 294
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q+DI+R AYS++SQ+GY+++ LG+G+ A++H I+HA K L FL
Sbjct: 295 LGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRTALFHLITHAYSKALLFLGS 351
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL + +P T T + LSL GIPPL F SK
Sbjct: 352 GSVIHSMETVVGYSPDKSQNMVLMGGLTKYVPITKTSFLLGTLSLCGIPPLACFWSK--- 408
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGM 459
+ +++ + PI + +F + + Y+ R + G +D L +
Sbjct: 409 -DEILNDSWLYSPIFAIIAWFTAGLTAFYMFRIYLLTFEGHLNVHFQDYSGKKSTLFYSI 467
Query: 460 AILG 463
+I G
Sbjct: 468 SIWG 471
>gb|AAF78991.1| (L75864) NADH dehydrogenase F [Glomeropitcairnia penduliflora]
Length = 634
Score = 146 bits (366), Expect = 5e-34
Identities = 121/442 (27%), Positives = 204/442 (45%), Gaps = 52/442 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 73 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTSSN 132
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TGS
Sbjct: 133 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSL 192
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ E + ++ S LLF+ A K+ FPLHVW PDA
Sbjct: 193 EFRDLP-----EITNNLIQNNGVNSLFATLCASLLFVGAVA-KSAQFPLHVWLPDAMEGP 246
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AG++ + L+I++ P I+ +G +T++
Sbjct: 247 TPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNFISLIGVITLL 292
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 293 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGS 349
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 350 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSK--- 406
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGM 459
+ +++ + PI + +F + + Y+ R + G ++ L +
Sbjct: 407 -DDILNDSWLYSPIFAVIAYFTAGLTAFYMFRVYLLTFDGYLRVHFQNYSSTKNGLFYSI 465
Query: 460 AILGTLNVVFGVAPGIIAKELN 481
++ G GV P ++ +N
Sbjct: 466 SLWGK-GTPRGVNPNLLLSTMN 486
>emb|CAC14149.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 586
Score = 146 bits (366), Expect = 5e-34
Identities = 108/404 (26%), Positives = 175/404 (42%), Gaps = 47/404 (11%)
Query: 78 MIAAVVGVSAILGMVSTA--KDGYEWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASF 135
+ A V + A++G V + + A + + AL + A D + ++FWE M FAS
Sbjct: 70 VFATVFTIMALIGTVYALHLSGAGQHMAAFVYVGSALAVVFAGDYLTLYLFWEGMAFASA 129
Query: 136 MMVLKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTM 191
+V A+ +Y ++ + G +L I L A GS F + G A
Sbjct: 130 YLVFAQGGRQAIRAAFRYLMVHVTGGVVLLGGILLHGAAAGSLLFGPVEGPLGAGAY--- 186
Query: 192 LGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGV 251
L L F + A + PL+ W DAY E + S +K V
Sbjct: 187 -----------------LILAGFLLNAAVPPLNAWLTDAYPEATVTGAVFMSAFTTKTAV 229
Query: 252 YGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSS 311
Y R+ P ++ +LG + + G I A L+ D RRL AY
Sbjct: 230 YVL-----------------ARAFPGIELLV-WLGTVMALYGVIYAVLENDCRRLLAYHI 271
Query: 312 ISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAE 371
+SQVGY++ G+GIGT L + A HA +H L+KGL F+ +IY TG+ + + GGL +
Sbjct: 272 VSQVGYMVAGIGIGTELAVNGATSHAFAHILYKGLLFMGAGAVIYVTGRRKLTELGGLYK 331
Query: 372 KMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYL-I 430
MP T + I +++ P GF SK ++ A + ++ + S+ F++ +
Sbjct: 332 AMPLTVALYMIGAFAISAFPFFSGFVSKSMVVAAAGQDHRALVMLALTMASSGTFLHTGL 391
Query: 431 RFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLNVVFGVAPG 474
+ Y ++FG ++ P + M + L + GV PG
Sbjct: 392 KLPYYMFFGTDRG--LQAREPPGNMLAAMGMAAALCIAIGVFPG 433
>pir||T12193 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Viburnum
rhytidophyllum chloroplast (fragment)
>gi|2605739|gb|AAB84401.1| (AF027273) NADH dehydrogenase
[Viburnum rhytidophyllum]
Length = 737
Score = 146 bits (365), Expect = 7e-34
Identities = 117/414 (28%), Positives = 200/414 (48%), Gaps = 48/414 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ + GY FA MS T LG+ T+ +
Sbjct: 84 EFGYLIDPLTSIMSILITTVGIMVLVYSDNYMSHDQGYLRFFAYMSFFSTSMLGLVTSSN 143
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y TGSF
Sbjct: 144 LIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSF 203
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F L + L V +L + K+ FPLHVW PDA
Sbjct: 204 EFRDLFEIFNN------LISNNEVNFLFVTFCAVLLIAGAVAKSAQFPLHVWLPDAMEGP 257
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L I + + + I+ +G +T+++G
Sbjct: 258 TPISALIHAATMVAAGI--FLVARLL---PLFIVIPHIMN------FISLIGIITVLLGA 306
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL ++
Sbjct: 307 TLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLGSGSI 363
Query: 355 I--------YRTGKTE-FKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I Y K++ GGL + +P T T + LSL GIPPL F SK +
Sbjct: 364 IHSMETIVGYSPNKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWSK----DE 419
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIED---TKDAPL 453
+++ + PI + +F + + Y+ R + G + ++ K+ PL
Sbjct: 420 ILNDSWLYSPIFAIIAWFTAGLTAFYMFRIYLLTFEGHLNAHFQNYSGKKNTPL 473
>emb|CAB39559.1| (AJ225078) putative NADH dehydrogenase [Stylidium emarginatum]
Length = 704
Score = 146 bits (365), Expect = 7e-34
Identities = 118/414 (28%), Positives = 198/414 (47%), Gaps = 48/414 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ + GY FA MS T LG+ T+ +
Sbjct: 74 EFGYLIDPLTSIMSILITTVGILVLIYSDNYMSHDHGYLRFFAYMSFFSTSMLGLVTSSN 133
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y TGSF
Sbjct: 134 LIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGFYWITGSF 193
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F L T + L V L +L + K+ FPLHVW PDA
Sbjct: 194 EFYDLFQIFNN------LIYTNGVNLLFVNLCAVLLVAGAIAKSAQFPLHVWLPDAMEGP 247
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG++ L L + P + I+ +G +T+ +G
Sbjct: 248 TPISALIHAATMVAAGIFLVARLLPLF----------IVITPIMNF-ISLIGIITVFLGA 296
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI++ AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL ++
Sbjct: 297 TLAIAQKDIKKGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLGSGSV 353
Query: 355 I--------YRTGKTEFKD-FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I Y K++ GGL + +P T T ++ LSL GIPPL F SK +
Sbjct: 354 IHSMEIIVGYSPNKSQNMGLMGGLTKHVPITKTSFLLSTLSLCGIPPLACFWSK----DE 409
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIED---TKDAPL 453
+++ + PI + + + + Y+ R + G ++ TK+APL
Sbjct: 410 ILNDSWLYSPIFSIIAYASAGLTAFYMFRIYLLTFEGHLNVHFQNYNGTKNAPL 463
>gb|AAF08139.1| (AF130183) NADH dehydrogenase subunit F [Pentaphragma ellipticum]
Length = 705
Score = 146 bits (365), Expect = 7e-34
Identities = 116/413 (28%), Positives = 200/413 (48%), Gaps = 45/413 (10%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ + GY F+ M+ T LG+ T+ +
Sbjct: 54 EFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDHGYVRFFSYMNFFSTSMLGLVTSSN 113
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y TGSF
Sbjct: 114 LIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSF 173
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F ++ F L + L V L +L K+ FPLHVW PDA
Sbjct: 174 EFRELFQIFNN------LISNNEVNLLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGP 227
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L I + + + I+++G LT+ +G
Sbjct: 228 TPISALIHAATMVAAGI--FLVARLL---PLFIVIPHIMN------FISWIGILTVFLGA 276
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFL----I 350
LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL +
Sbjct: 277 TLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLGSGCV 333
Query: 351 VATLIYRTGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
+ ++ G + K GGL + +P T T + LSL GIPPL F SK EA
Sbjct: 334 IHSMETIVGYSPSKSQNMVLMGGLTKYVPITKTAFLLGTLSLCGIPPLACFWSK----EA 389
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPL 455
+++ + PI + + + + Y+ R ++ GQ ++ +PL
Sbjct: 390 ILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLIFEGQLNVYFQNYSGKNIPL 442
>gb|AAF27229.1|AF111749_1 (AF111749) NADH dehydrogenase [Durio zibethinus]
Length = 715
Score = 146 bits (365), Expect = 7e-34
Identities = 114/366 (31%), Positives = 178/366 (48%), Gaps = 39/366 (10%)
Query: 53 GVSYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL- 108
G S+TI F+ G+ + L I S++ VG+ ++ + GY FA MSL
Sbjct: 72 GWSWTINNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLF 131
Query: 109 -TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLV 162
T LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G + +L+
Sbjct: 132 NTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRIGDFGLLL 191
Query: 163 AIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFP 222
I Y TGSF F D+ F + + L V L L K+ FP
Sbjct: 192 GILGFYWITGSFEFQDLFEIFNNVIYNNEV------HFLFVTLCASLLFAGAXAKSAQFP 245
Query: 223 LHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVI 282
LHVW PDA I + + AG++ L+ L+ ++I P +I
Sbjct: 246 LHVWLPDAMXGPTPISALIHAATMVAAGIF---LVXRLLPLFIVI--------PYIMNLI 294
Query: 283 AFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHAL 342
+ +G +T+++G LA Q+DI+ AYS++SQ GY++V LG+G+ AA++H I+HA
Sbjct: 295 SLIGIITVLLGATLALAQKDIKXGLAYSTMSQXGYMMVALGMGS---YRAALFHLITHAY 351
Query: 343 FKGLFFLIVATLI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPL 393
K L FL ++I Y K++ F GGL + +P T + LS GIPPL
Sbjct: 352 SKALLFLGSGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSXCGIPPL 411
Query: 394 VGFASK 399
F SK
Sbjct: 412 ACFWSK 417
>gb|AAF65739.1|AF228525_9 (AF228525) F420H2 dehydrogenase subunit FpoL [Methanosarcina mazei]
Length = 672
Score = 146 bits (365), Expect = 7e-34
Identities = 127/494 (25%), Positives = 224/494 (44%), Gaps = 59/494 (11%)
Query: 77 SMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFM 136
S ++ ++ + A+ M A + + L + + +++ F+ WE++ S++
Sbjct: 93 SFVSLLIHIYAVSYMSHDAGKARYFAETALFTAAMLSLVLSDNILQLFVSWELVGLCSYL 152
Query: 137 MV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAK----TGSFS-------FSDIS 180
++ F + AA+ K FL + +G L I ++ + +G F F +I
Sbjct: 153 LIGFWFEKPSAAAAAKKAFLTTRIGDVMFLTGIIVLTSDLLKVSGGFQDGVYLLRFDEIF 212
Query: 181 AFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTA 240
++ + A + F + +I LLF K+G FPLHVW PDA
Sbjct: 213 SYIPELAALQI--NILGFEISHLTIITLLFFGGAVGKSGQFPLHVWLPDAMEGPTTVSAL 270
Query: 241 IFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQ 300
I + + AGVY + + +AP V+A+ GG T + G + +
Sbjct: 271 IHAATMVTAGVYLVARTFPMFI-----------AAPDSLMVVAYFGGFTALFAGTMGIVM 319
Query: 301 EDIRRLFAYSSISQVGYILVGLGIGTSLGIEA---AIYHAISHALFKGLFFLIVATLIYR 357
D++R+ A+S+ISQ+GY+++GLG+GT++G+EA +++H I+HA FK L FL ++I+
Sbjct: 320 NDLKRVLAFSTISQLGYMMLGLGLGTAIGLEAVGISLFHLINHAFFKALLFLCAGSVIHA 379
Query: 358 TGKTEFKDFGGLAEKMPFTFTMAFIAILSLA--GIP----PLVGFASKWLIFEAVI---- 407
G + ++ GG+ + MP T IA L+LA GIP GF SK I EA
Sbjct: 380 VGTQDMRELGGVGKVMPITAATMTIAALALAGFGIPGTSIGTSGFMSKDPIIEAAYLFGE 439
Query: 408 --SQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTL 465
S +P + ++ + + +Y+ R + + G +P ++P + I ++IL
Sbjct: 440 HSSNWIPYVFSIL--AALLTSIYIFRLIFMTFTG-KPRSNYHGHESPAIMTIPLSILAIF 496
Query: 466 NVVFGVAPGIIAKE-LNAIFGRTVIG------GNIWELELGFGRYNALLVTIW-----LV 513
+ FG E L F + + I E EL + L +W +
Sbjct: 497 ALAFGALTRTGFMEFLEETFTNSFVNLDIGALAGIGENELVAAAGHEPLAVLWPPVIVAL 556
Query: 514 IGLLIAGILYFLGA 527
G IA ++Y+L A
Sbjct: 557 AGFAIAFVIYYLRA 570
>sp|Q56228|NQOD_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 13 (NADH DEHYDROGENASE 1,
CHAIN 13) (NDH-1, CHAIN 13) >gi|7432344|pir||T11910 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO13 -
Thermus aquaticus thermophilus
>gi|1279873|gb|AAA97950.1| (U52917) NADH dehydrogenase
I, subunit NQO13 [Thermus thermophilus]
Length = 469
Score = 146 bits (364), Expect = 9e-34
Identities = 133/501 (26%), Positives = 226/501 (44%), Gaps = 47/501 (9%)
Query: 4 LLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTITV--- 60
++LAV+ P+V G L L G+ +GV+GA + + + L+ + GV++
Sbjct: 2 VVLAVLL-PVVFGALLLL----GLPRALGVLGAGLSFLLNLYLFLTHPGGVAHAFQAPLL 56
Query: 61 --GGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTGALGIFTAQ 118
G F + L+ +F + + ++ LG + +G AL+ LG+F A+
Sbjct: 57 PGAGVYWAFGLDGLSALFFL---TIALTVFLGALVARVEGRFLGLALLMEGLLLGLFAAR 113
Query: 119 DLVVFFIFWEIMTFASFMMVLKFN---RAASLKYFLL-SIMGAYAMLVAIGLIYAKTGSF 174
DL+VF++F+E + +M+ + R +L F+L +++G+ ML A+ G
Sbjct: 114 DLLVFYVFFEAALIPALLMLYLYGGEGRTRALYTFVLFTLVGSLPMLAAV------LGDR 167
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
S F ++ ++ L AF ++L F LAF +K +FPLH W P + E
Sbjct: 168 LLSGSPTFLLEDLLAHPLQEEAAF------WVFLGFALAFDIKTPLFPLHAWLPPFHQEN 221
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
S A G L K GV+ F + I L A A G ++ FL L+ + G
Sbjct: 222 HPSGLADALGTLYKVGVFDFF--------RFDIPLAPEGFAQAQGLLL-FLAALSALYGA 272
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
+A +D + L AY+ +S +G +G+ GT G +Y + ++ G FL+ L
Sbjct: 273 WVAFAAKDFKTLLAYAGLSHMGVAALGVFSGTPEGAMGGLYLLAASGVYTGGLFLLAGRL 332
Query: 355 IYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPIL 414
RTG E + GLA+ P +A I L++ G+P L GF ++L + P L
Sbjct: 333 YERTGTLEIGRYRGLAQSAPGLAALALILFLAMVGLPGLSGFPGEFLTLLGAYKAS-PWL 391
Query: 415 GGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLN-VVFGVAP 473
+ F Y + ++ + S ++D A G A+L L ++ GV P
Sbjct: 392 AALAFLSVIASAAYALTAFQKTFWEEGGSGVKDLAGAEW----GFALLSVLALLLMGVFP 447
Query: 474 GIIAKELNAI---FGRTVIGG 491
G A+ L+ + F + + GG
Sbjct: 448 GYFARGLHPLAEAFAKLLGGG 468
>gb|AAB09276.1| (U47428) NADH dehydrogenase subunit [Solanum betaceum]
Length = 695
Score = 146 bits (364), Expect = 9e-34
Identities = 112/391 (28%), Positives = 185/391 (46%), Gaps = 48/391 (12%)
Query: 37 LIPLIGLIKLYPSLGQGVSYTITVGGFK----------LGFMMSHLNWIFSMIAAVVGVS 86
L+ ++ + +Y S+ Q S ++ G+ G+++ L I S++ VG+
Sbjct: 39 LLSIVMIFSIYLSIQQINSSSLYQYGWSWIINNDFSLDFGYLIDPLTSIMSILITTVGIM 98
Query: 87 AIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKF 141
++ GY FA MS T LG+ T+ + + +IFWE++ S++++ F
Sbjct: 99 VLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLVTSSNFIQIYIFWELVGLCSYLLIGFWF 158
Query: 142 NRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPA 197
R A K F+ + +G + +L+ I Y TGSF F D+ F + +
Sbjct: 159 TRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFRDLFEIFNNLIYNNEV----- 213
Query: 198 FSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILL 257
+ + V L +L K+ FPLHVW PDA I + + AG++ L
Sbjct: 214 -NFVFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 272
Query: 258 YILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGY 317
L R P Y+I+ +G +T+++G LA Q+DI+R AYS++SQ+GY
Sbjct: 273 LPLF-----------RVIPYIMYLISVIGIITVLLGATLALAQKDIKRGLAYSTMSQLGY 321
Query: 318 ILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYR----TGKTEFKD-----FGG 368
+++ LG+G+ +A++H I+HA K L FL ++I+ G + K GG
Sbjct: 322 MMLALGMGS---YRSALFHLITHAYSKALLFLGSGSIIHSMETIVGYSPAKSQNMGLMGG 378
Query: 369 LAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
L + +P T + LSL GIPPL F SK
Sbjct: 379 LRKHVPITKITFLLGTLSLCGIPPLACFWSK 409
>gb|AAB17613.1| (U72753) NADH dehydrogenase subunit [Solanum glaucophyllum]
Length = 695
Score = 146 bits (364), Expect = 9e-34
Identities = 112/391 (28%), Positives = 185/391 (46%), Gaps = 48/391 (12%)
Query: 37 LIPLIGLIKLYPSLGQGVSYTITVGGFK----------LGFMMSHLNWIFSMIAAVVGVS 86
L+ ++ + +Y S+ Q S ++ G+ G+++ L I S++ VG+
Sbjct: 39 LLSIVMIFSIYLSIQQINSSSLYQYGWSWIINNDFSLDFGYLIDPLTSIMSILITTVGIM 98
Query: 87 AIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKF 141
++ GY FA MS T LG+ T+ + + +IFWE++ S++++ F
Sbjct: 99 VLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLVTSSNFIQIYIFWELVGLCSYLLIGFWF 158
Query: 142 NRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPA 197
R A K F+ + +G + +L+ I Y TGSF F D+ F + +
Sbjct: 159 TRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFRDLFEIFNNLIYNNEV----- 213
Query: 198 FSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILL 257
+ + V L +L K+ FPLHVW PDA I + + AG++ L
Sbjct: 214 -NFVFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 272
Query: 258 YILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGY 317
L R P Y+I+ +G +T+++G LA Q+DI+R AYS++SQ+GY
Sbjct: 273 LPLF-----------RVIPYIMYLISVIGIITVLLGATLALAQKDIKRGLAYSTMSQLGY 321
Query: 318 ILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYR----TGKTEFKD-----FGG 368
+++ LG+G+ +A++H I+HA K L FL ++I+ G + K GG
Sbjct: 322 MMLALGMGS---YRSALFHLITHAYSKALLFLGSGSIIHSMETIVGYSPAKSQNMGLMGG 378
Query: 369 LAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
L + +P T + LSL GIPPL F SK
Sbjct: 379 LRKHVPITKITFLLGTLSLCGIPPLACFWSK 409
>gb|AAB17614.1| (U72749) NADH dehydrogenase subunit [Solanum luteoalbum]
Length = 695
Score = 146 bits (364), Expect = 9e-34
Identities = 112/391 (28%), Positives = 185/391 (46%), Gaps = 48/391 (12%)
Query: 37 LIPLIGLIKLYPSLGQGVSYTITVGGFK----------LGFMMSHLNWIFSMIAAVVGVS 86
L+ ++ + +Y S+ Q S ++ G+ G+++ L I S++ VG+
Sbjct: 39 LLSIVMIFSIYLSIQQINSSSLYQYGWSWIINNDFSLDFGYLIDPLTSIMSILITTVGIM 98
Query: 87 AIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKF 141
++ GY FA MS T LG+ T+ + + +IFWE++ S++++ F
Sbjct: 99 VLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLVTSSNFIQIYIFWELVGLCSYLLIGFWF 158
Query: 142 NRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPA 197
R A K F+ + +G + +L+ I Y TGSF F D+ F + +
Sbjct: 159 TRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFRDLFEIFNNLIYNNEV----- 213
Query: 198 FSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILL 257
+ + V L +L K+ FPLHVW PDA I + + AG++ L
Sbjct: 214 -NFVFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARL 272
Query: 258 YILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGY 317
L R P Y+I+ +G +T+++G LA Q+DI+R AYS++SQ+GY
Sbjct: 273 LPLF-----------RVIPYIMYLISVIGIITVLLGATLALAQKDIKRGLAYSTMSQLGY 321
Query: 318 ILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYR----TGKTEFKD-----FGG 368
+++ LG+G+ +A++H I+HA K L FL ++I+ G + K GG
Sbjct: 322 MMLALGMGS---YRSALFHLITHAYSKALLFLGSGSIIHSMETIVGYSPAKSQNMGLMGG 378
Query: 369 LAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
L + +P T + LSL GIPPL F SK
Sbjct: 379 LRKHVPITKITFLLGTLSLCGIPPLACFWSK 409
>pir||B70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoM1 -
Aquifex aeolicus >gi|2983743|gb|AAC07304.1| (AE000734)
NADH dehydrogenase I chain M [Aquifex aeolicus]
Length = 491
Score = 146 bits (364), Expect = 9e-34
Identities = 139/506 (27%), Positives = 221/506 (43%), Gaps = 65/506 (12%)
Query: 1 MNELLLAVIFSPLVAGFL-AWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTIT 59
M LL IF PLV L A + N + +IGA++ LI L+ V++ +
Sbjct: 1 METLLNVAIFLPLVGALLVAVIRNEIFAKVASILIGAVVALISLVLF-------VNFDFS 53
Query: 60 VGGFKLGFMMSHLNWIFSM-IAAVVGV-----SAILGMVSTAKDGYEW----------LF 103
GF+ +++ WI ++ I VGV S IL Y W F
Sbjct: 54 KKGFQFE---TYVPWIKTLGIGYHVGVDGMAISLILMTSILFLAAYIWSWKIEDRPSLYF 110
Query: 104 ALMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA----ASLKYFLLSIMGA 157
AL T +G+F A DL +F++FWE M + ++ + A+ K+FL + G+
Sbjct: 111 ALFLALETACIGVFAALDLFLFYLFWEGMLIPMYFIIGFWGHDRKVYAANKFFLYTFFGS 170
Query: 158 YAMLVAIGLI----YAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLA 213
+L+ I I Y +TG SF D G + P + +L + +LLF +
Sbjct: 171 LFLLLGIASILVYGYFETGKISF-DYFFHLGLDY--------PLWLEL---IAFLLFGIG 218
Query: 214 FGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVR 273
F VK M+P H W PDA+ E + + I +GVL K G YGF+ + + +
Sbjct: 219 FAVKIPMWPFHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFVRFSLPFFPE--------- 269
Query: 274 SAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAA 333
++ + +I L + +I ++A Q ++RL AYSSIS +G + +G S + A
Sbjct: 270 ASKYYIPLIFTLSVVAVIYAAMMAIAQTHMKRLIAYSSISHMGLVTLGTFAMNSDALNGA 329
Query: 334 IYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPL 393
IY I+H L FL + R D GGLA +P+ F+A+L+ P
Sbjct: 330 IYLMIAHGLSSAALFLGAGFIYDRIHSYHMDDLGGLARYIPYFTFAFFLAVLAGIAFPGF 389
Query: 394 VGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWF------GQRPSDIED 447
F S++LI + + P+ + G +G Y + V +R +
Sbjct: 390 ASFVSEFLILLGIF-EKFPVWAFVAGIGMVLGAAYSLYMFRKVMLEEESIPEERVEKWKK 448
Query: 448 TKDAPLPLAIGMAILGTLNVVFGVAP 473
KD L AI A++ + +V G+ P
Sbjct: 449 LKDLELHHAIPFALIIGMALVMGIYP 474
>gb|AAG25137.1| (AF276021) NADH dehydrogenase subunit F [Tricyrtis affinis]
Length = 660
Score = 146 bits (364), Expect = 9e-34
Identities = 116/373 (31%), Positives = 179/373 (47%), Gaps = 42/373 (11%)
Query: 46 LYPSLGQGVSYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWL 102
+Y LG S+TI + G ++ L I S++ VG+ ++ + GY
Sbjct: 39 IYQYLG---SWTINNDFSLEFGHLIDPLTSIMSILITTVGIIVLIYSDNYMSHDQGYLRF 95
Query: 103 FALMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIM 155
A MS T LG+ T+ +L+ +IFWE++ +S++++ F R +A K F+ + +
Sbjct: 96 IAYMSFSNTSMLGLVTSSNLIQIYIFWELVGMSSYLLIGFWFTRPIAASACQKAFVTNRV 155
Query: 156 GAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFG 215
G + +L+ I Y TGSF F D+ E V+ ++ S +LLF+ A
Sbjct: 156 GDFGLLLGILGFYWITGSFEFRDLF-----EIVNNLIHNNGXNSVFATLCAFLLFVGAIA 210
Query: 216 VKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSA 275
K+ FPLHVW PDA I + + AG++ L L R
Sbjct: 211 -KSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLF-----------RVI 258
Query: 276 PAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIY 335
P ++ +G +T+++G LA Q DI+R FAYS++SQ+GYI+ L IG+ AA++
Sbjct: 259 PYIMNFVSLIGVITVLLGATLALAQRDIKRSFAYSTMSQLGYIMFALCIGS---YRAALF 315
Query: 336 HAISHALFKGLFFLIVATLI--------YRTGKTE-FKDFGGLAEKMPFTFTMAFIAILS 386
H I+HA + L FL ++I Y K++ GGL +P T T LS
Sbjct: 316 HLITHAYSRALLFLGSGSIIHSMEPIVGYAPDKSQNMVLMGGLTRYLPITRTTFLSGTLS 375
Query: 387 LAGIPPLVGFASK 399
L GIPPL F SK
Sbjct: 376 LCGIPPLACFWSK 388
>gb|AAG25138.1| (AF276022) NADH dehydrogenase subunit F [Tricyrtis latifolia]
Length = 657
Score = 146 bits (364), Expect = 9e-34
Identities = 116/373 (31%), Positives = 179/373 (47%), Gaps = 42/373 (11%)
Query: 46 LYPSLGQGVSYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWL 102
+Y LG S+TI + G ++ L I S++ VG+ ++ + GY
Sbjct: 39 IYQYLG---SWTINNDFSLEFGHLIDPLTSIMSILITTVGIIVLIYSDNYMSHDQGYLRF 95
Query: 103 FALMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIM 155
A MS T LG+ T+ +L+ +IFWE++ +S++++ F R +A K F+ + +
Sbjct: 96 IAYMSFSNTSMLGLVTSSNLIQIYIFWELVGMSSYLLIGFWFTRPIAASACQKAFVTNRV 155
Query: 156 GAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFG 215
G + +L+ I Y TGSF F D+ E V+ ++ S +LLF+ A
Sbjct: 156 GDFGLLLGILGFYWITGSFEFRDLF-----EIVNNLIHNNGXNSVFATLCAFLLFVGAIA 210
Query: 216 VKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSA 275
K+ FPLHVW PDA I + + AG++ L L R
Sbjct: 211 -KSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLF-----------RVI 258
Query: 276 PAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIY 335
P ++ +G +T+++G LA Q DI+R FAYS++SQ+GYI+ L IG+ AA++
Sbjct: 259 PYIMNFVSLIGVITVLLGATLALAQRDIKRSFAYSTMSQLGYIMFALCIGS---YRAALF 315
Query: 336 HAISHALFKGLFFLIVATLI--------YRTGKTE-FKDFGGLAEKMPFTFTMAFIAILS 386
H I+HA + L FL ++I Y K++ GGL +P T T LS
Sbjct: 316 HLITHAYSRALLFLGSGSIIHSMEPIVGYAPDKSQNMVLMGGLTRYLPITRTTFLSGTLS 375
Query: 387 LAGIPPLVGFASK 399
L GIPPL F SK
Sbjct: 376 LCGIPPLACFWSK 388
>emb|CAC17812.1| (AJ400887) NADH dehydrogenase subunit F [Tetramerista sp.]
Length = 653
Score = 146 bits (364), Expect = 9e-34
Identities = 114/408 (27%), Positives = 194/408 (46%), Gaps = 51/408 (12%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ + GY FA MS T LG+ T+ +
Sbjct: 73 EFGYLIDPLTSIMSILITSVGILVLIYSDNYMSHDRGYLRFFAYMSFFSTSMLGLVTSSN 132
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y TGSF
Sbjct: 133 LIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSF 192
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFG---VKAGMFPLHVWAPDAY 231
F D+ F ++++V L+ L +L F K+ FPLHVW PDA
Sbjct: 193 EFRDLFEIFNNLIFE---------NEVNVLLVILCAVLLFAGAVAKSAQFPLHVWLPDAM 243
Query: 232 SETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AG++ L L + P +I+ +G +T+
Sbjct: 244 EGPTPISALIHAATMVAAGIFLVARLLPLFI-----------AIPYITNLISLIGIITVF 292
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q+DI+R AYS+ Q+GY+++ LG+G+S A++H I+HA K L FL
Sbjct: 293 LGATLALTQKDIKRGLAYSTXXQLGYMMLALGMGSS---RTALFHLITHAYSKALLFLGS 349
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL + +P T T + LSL GIPPL F SK
Sbjct: 350 GSVIHSMETIVGYSPDKSQNMVLMGGLRKHVPITKTSFLLGTLSLCGIPPLACFWSK--- 406
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIED 447
+ +++ + PI + +F + + Y+ R + G + +++
Sbjct: 407 -DEILNDSWLYSPIFAIIAWFTAGLTAFYMFRIYLLTFEGHLNAHLQN 453
>gi|11466747 ndh5 [Marchantia polymorpha] >gi|128768|sp|P06264|NU5C_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|66191|pir||DELVN5 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - liverwort (Marchantia polymorpha)
chloroplast >gi|11718|emb|CAA28129.1| (X04465) ndh5
[Marchantia polymorpha]
Length = 692
Score = 145 bits (363), Expect = 1e-33
Identities = 112/397 (28%), Positives = 192/397 (48%), Gaps = 45/397 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAILGMVSTA--KDGYEWLFALMSLTGA--LGIFTAQD 119
++G+++ L I ++ V V ++ S +GY F +SL A LG+ + +
Sbjct: 84 EIGYLLDPLTSIMLVLVTTVAVMVMIYSDSYMFYDEGYIKFFCYLSLFTASMLGLVLSPN 143
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R ++ K F+ + +G + +L+ I Y TGSF
Sbjct: 144 LIQVYIFWELVGMCSYLLIGFWFTRPSAANACQKAFVTNRIGDFGLLLGILGFYWITGSF 203
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGV-KAGMFPLHVWAPDAYSE 233
F +S F + + L A + LFL V K+ FPLH+W PDA
Sbjct: 204 DFQQLSKRFFELLSYNQIN-------LVFATLCALFLFLGPVAKSAQFPLHIWLPDAMEG 256
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVG 293
I + + AG++ ++ L + P +I++ G +T ++G
Sbjct: 257 PTPISALIHAATMVAAGIFLVARMFPLF-----------QMLPFVMSIISWTGAITALLG 305
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
+A Q+D+++ AYS++SQ+GY+++ LGIG+ +A ++H I+HA K L FL +
Sbjct: 306 ATIALAQKDLKKGLAYSTMSQLGYMMLALGIGS---YKAGLFHLITHAYSKALLFLGSGS 362
Query: 354 LI--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFE 404
+I Y K++ F GGL + MP T LSL GIPP FA W E
Sbjct: 363 VIHSMEPIVGYHPNKSQNMIFMGGLRQYMPITAITFLFGTLSLCGIPP---FACFWSKDE 419
Query: 405 AVISQ--NLPILGGMVFFGSAIGFVYLIRFTYAVWFG 439
+++ + PILG + FF + + Y+ R + + G
Sbjct: 420 ILVNSWLHFPILGSIAFFTAGLTAFYMFRIYFLTFEG 456
>pir||T34612 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 [similarity] -
Streptomyces coelicolor >gi|5042265|emb|CAB44519.1|
(AL078618) nuoM, NADH dehydrogenase subunit
[Streptomyces coelicolor]
Length = 523
Score = 145 bits (363), Expect = 1e-33
Identities = 110/406 (27%), Positives = 189/406 (46%), Gaps = 41/406 (10%)
Query: 103 FALMSLTGALGI--FTAQDLVVFFIFWEIMTFASFMMVLKF-NRA--------------A 145
FAL+ A+ I F A D+ +F+IF+E M + ++ F +RA A
Sbjct: 123 FALILAVEAMVIISFEATDVFLFYIFFEAMLIPLYFLIGGFGDRAHEHGEKTAATQRSYA 182
Query: 146 SLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVAL 205
++K+ L ++ G ML A+ +Y G+FS ++I+ G+ +
Sbjct: 183 AVKFLLYNLAGGLIMLAAVIGLYVVAGNFSLTEIA--------EARANGSLDMATSTERW 234
Query: 206 IYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKL 265
++L F AF VKA +FPLH W P+A E+ + + V+ K G + + + ++ +
Sbjct: 235 LFLGFFFAFAVKAPLFPLHTWLPNAMGESTAPVAVLITAVVDKVGTFAMLRFCLQLFPE- 293
Query: 266 LIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIG 325
+ P VI L ++II G +LA Q DI+RL AY+SIS G+I++G+
Sbjct: 294 ----ASKWATP----VILVLAVISIIYGALLAVGQRDIKRLIAYASISHFGFIIMGIFAM 345
Query: 326 TSLGIEAAIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPF---TFTMAFI 382
TS G A + ++H + + LI LI R G DFGG+ + P TF + +
Sbjct: 346 TSQGQSGATLYMVNHGISTAVLMLIAGFLISRRGSRLIADFGGVQKVAPILAGTFLIGGL 405
Query: 383 AILSLAGIPPLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRP 442
A LSL G+ P F S++L+ ++ P++G + G + +Y + G
Sbjct: 406 ATLSLPGLAP---FVSEFLVLVGTFTR-YPVIGIIATLGIVLAALYTLVLYQRTMTGPVK 461
Query: 443 SDIEDTKDAPLPLAIGMAILGTLNVVFGVAPGIIAKELNAIFGRTV 488
+++ D + + +A L L + GV P + +N +T+
Sbjct: 462 AEVNGMPDLRVRELVVVAPLVALLIFLGVFPKPVTDIVNPAVEQTM 507
>emb|CAB59327.1| (AJ236304) NADH dehydrogenase subunit F [Pentas lanceolata]
Length = 732
Score = 145 bits (363), Expect = 1e-33
Identities = 110/374 (29%), Positives = 186/374 (49%), Gaps = 46/374 (12%)
Query: 49 SLGQGVSYTITVGGFKL--GFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFA 104
S+ Q V + + F L G+++ L I S++ VG+ ++ Y FA
Sbjct: 67 SIYQYVWSWVIINDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFA 126
Query: 105 LMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGA 157
MSL T LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G
Sbjct: 127 YMSLFSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRIGD 186
Query: 158 YAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFG-- 215
+ +L+ I + TGSF F D+ F V+ +++ A + L +L F
Sbjct: 187 FGLLLGILGFFWITGSFEFRDLFEIFNNLIVT---------NEVSFAFVTLCAVLLFAGA 237
Query: 216 -VKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRS 274
K+ FPLHVW PDA I + + AG+ F++ +L + ++
Sbjct: 238 VAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGI--FLVARLLPFFIVI-------- 287
Query: 275 APAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAI 334
P +I+ +G +T+++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A+
Sbjct: 288 -PYIMNLISLVGTVTLLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGLGS---YRSAL 343
Query: 335 YHAISHALFKGLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAIL 385
+H I+HA K L FL ++I+ G + K GGL + +P T + + L
Sbjct: 344 FHLITHAYSKALLFLGSGSIIHSMETVVGYSPHKSQNMALMGGLTKHVPLTKSTFLVGTL 403
Query: 386 SLAGIPPLVGFASK 399
S+ GIPPL F SK
Sbjct: 404 SICGIPPLACFWSK 417
>gb|AAF08160.1| (AF130204) NADH dehydrogenase subunit F [Panax ginseng]
Length = 741
Score = 145 bits (363), Expect = 1e-33
Identities = 116/410 (28%), Positives = 198/410 (48%), Gaps = 45/410 (10%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ + GY FA MS T LG+ T+ +
Sbjct: 84 EFGYLIDPLTSIMSILITTVGILVLVYSDNYMSHDQGYLRFFAYMSFFSTSMLGLVTSSN 143
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y TGSF
Sbjct: 144 LIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSF 203
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + + + L V L +L K+ FPLHVW PDA
Sbjct: 204 EFRDLFKIFSNLIYNNEV------NFLFVTLCAVLLFAGAVAKSAQFPLHVWLPDAMEGP 257
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L I + + + +I+ +G +T+++G
Sbjct: 258 TPISALIHAATMVAAGI--FLVARLL---PLFIVIPHIMN------LISLVGIITVLLGA 306
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ G+G+ +A++H I+HA K L FL ++
Sbjct: 307 TLALAQKDIKRGLAYSTMSQLGYMMLAFGMGS---YRSALFHLITHAYSKALLFLGSGSV 363
Query: 355 I--------YRTGKTEFKDF-GGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I Y K++ F GGL + +P T T + LSL GIPPL F SK +
Sbjct: 364 IHSMETLVGYSPKKSQNMVFMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSK----DE 419
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAP 452
+I+ PI + + + + Y+ R + G ++ K+ P
Sbjct: 420 IINDTWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLNVHFQNYKNTP 469
>pir||T12297 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 [similarity] -
Pseudomonas syringae (fragment)
>gi|2920663|gb|AAC04581.1| (AF048756) NADH dehydrogenase
I chain M [Pseudomonas syringae]
Length = 444
Score = 145 bits (362), Expect = 1e-33
Identities = 106/431 (24%), Positives = 198/431 (45%), Gaps = 37/431 (8%)
Query: 58 ITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTA--KDGYEWLFALMSLTGALGIF 115
IT G + + L+ + ++ ++GV ++L K G+ L + L G +G+F
Sbjct: 7 ITRFGIDVHLALDGLSLLMILLTGLLGVLSVLCSWKEIQRKVGFFHLNLMWILGGVVGVF 66
Query: 116 TAQDLVVFFIFWEIMTFASFMMVLKFNRAAS----------LKYFLLSIMGAYAMLVAI- 164
A DL +FF FWE+M + ++ + ++S K+F+ + MLVAI
Sbjct: 67 LAIDLFMFFFFWEMMLVPMYFLIALWGHSSSDGKKTRIYAATKFFIFTQASGLIMLVAIL 126
Query: 165 GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLH 224
GL+ F+ + + F + + T L + ++ L F +AF VK + PLH
Sbjct: 127 GLVLVH---FNQTGVITFAYADLLKTKLAPGTEY------ILMLGFFIAFAVKLPVVPLH 177
Query: 225 VWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAF 284
W PDA+++ + + +G+L K YG + + ++ ++ F +
Sbjct: 178 SWLPDAHAQAPTAGSVDLAGILLKTAAYGLLRFALPLFPN---------ASAEFAPIAMT 228
Query: 285 LGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFK 344
LG + I G LA Q DI+RL A+SS+S +G++L+G+ G+ ++ + I+H L
Sbjct: 229 LGLVGIFYGAFLAFAQTDIKRLIAFSSVSHMGFVLIGIYSGSQQALQGVLIQMIAHGLSA 288
Query: 345 GLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFE 404
F++ L R + ++ GGL ++ + ++ + G+P F ++LI
Sbjct: 289 AALFILSGQLYERLHTRDMREMGGLWSRIAYIPAISLFFAAASLGLPGTGNFVGEFLILL 348
Query: 405 AVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSD--IEDTKDAPLPLAIGMAIL 462
+ + P + + G G VY + + +FG SD ++ + + +G+A+
Sbjct: 349 GSFASS-PWITAIATSGLVFGSVYSLIMIHRAYFGPSKSDEVLKGMDGREMIMVLGLAV- 406
Query: 463 GTLNVVFGVAP 473
L VV GV P
Sbjct: 407 --LLVVLGVFP 415
>gb|AAF08153.1| (AF130197) NADH dehydrogenase subunit F [Viburnum sargentii]
Length = 742
Score = 145 bits (362), Expect = 1e-33
Identities = 116/414 (28%), Positives = 200/414 (48%), Gaps = 48/414 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ + GY FA MS T LG+ T+ +
Sbjct: 84 EFGYLIDPLTSIMSILITTVGIMVLVYSDNYMSHDQGYLRFFAYMSFFSTSMLGLVTSSN 143
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y TGSF
Sbjct: 144 LIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSF 203
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + + + L V +L K+ FPLHVW PDA
Sbjct: 204 EFRDLFEIFNNLIYNNEV------NFLFVTFCAVLLFAGAVAKSAQFPLHVWLPDAMEGP 257
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L L I + + + I+ +G +T+++G
Sbjct: 258 TPISALIHAATMVAAGI--FLVARLL---PLFIVIPHIMN------FISLIGIITVLLGA 306
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL ++
Sbjct: 307 TLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLGSGSI 363
Query: 355 I--------YRTGKTE-FKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I Y K++ GGL + +P T T + LSL GIPPL F SK +
Sbjct: 364 IHSMETIVGYSPNKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWSK----DE 419
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIED---TKDAPL 453
+++ + PI + +F + + Y+ R + G + ++ K+ PL
Sbjct: 420 ILNDSWLYSPIFAIIAWFTAGLTAFYMFRIYLLTFEGHLNAHFQNYSGKKNTPL 473
>emb|CAB39558.1| (AJ225079) putative NADH dehydrogenase [Stylidium calcaratum]
Length = 743
Score = 145 bits (361), Expect = 2e-33
Identities = 118/396 (29%), Positives = 187/396 (46%), Gaps = 52/396 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+ + L I ++ VG+ ++ + DGY FA M T LG+ T+ +
Sbjct: 72 EFGYWIDPLTSIMLILITTVGILVLIYSDNYMSHDDGYLRFFAYMGFFSTSMLGLVTSSN 131
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y TGSF
Sbjct: 132 LIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSF 191
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ L T + L V+L +L K+ FPLHVW PDA
Sbjct: 192 EFRDLFQILNN------LIYTNEVNFLFVSLCAILLFAGAAAKSAQFPLHVWLPDAMEGP 245
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG+ F++ +L ++ P +I+ +G +T+ +G
Sbjct: 246 TPISALIHAATMVAAGI--FLVARLLPLFMVI---------PHIMNLISLIGIITVFLGA 294
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LGIG+ +A++H I+HA K L FL ++
Sbjct: 295 TLALAQKDIKRGLAYSTMSQLGYMMLALGIGS---YRSALFHLITHAYSKALLFLGSGSV 351
Query: 355 I--------YRTGKTE-FKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK------ 399
I Y K++ GGL + +P T T + LSL GIPPL F SK
Sbjct: 352 IHSMETIVGYSPNKSQNMVLMGGLTKHVPITQTSFLLGTLSLCGIPPLACFWSKDEILND 411
Query: 400 -WLIFE--AVISQNLPILGGMVFFGSAIGFVYLIRF 432
WL A+I+ P L F +YL+ F
Sbjct: 412 SWLYSPSFAIIAYAAPGLTAFYMFR-----IYLLTF 442
>emb|CAB64689.1| (AJ235829) NADH dehydrogenase, putative [Anthocleista grandiflora]
Length = 732
Score = 145 bits (361), Expect = 2e-33
Identities = 110/400 (27%), Positives = 197/400 (48%), Gaps = 51/400 (12%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWL--FALMSL--TGALGIFTAQD 119
+LG+++ L I ++ VG++ + + +L F MS T LG+ T+ +
Sbjct: 84 ELGYLIDPLTSIMLILITTVGITVLFYSDNYMAHDQSYLKFFTYMSFFSTSMLGLVTSAN 143
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ +S++++ F R A K F+ + +G + +L+ I Y TGSF
Sbjct: 144 LIQIYIFWELVGMSSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWITGSF 203
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ E V+ ++ + L + L +L K+ FPLHVW PDA
Sbjct: 204 EFEDLF-----EIVNNLISNNEV-NPLFLTLCAVLLFAGSVAKSAQFPLHVWLPDAMEGP 257
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AG++ + L+I++ P+ +I+ + +T++
Sbjct: 258 TPISALIHAATMVAAGIFLVARLLPLFIVI--------------PSIMNLISLIAIITVL 303
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q+DI+R AYS++SQ+GY+++ LG+G+ A++H I+HA K L FL
Sbjct: 304 LGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRNALFHLITHAYSKALLFLGS 360
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + +K GGL + +P T T F+ LSL+GIPPL F SK
Sbjct: 361 GSIIHSMERLVGYSPYKSQNMVLMGGLGKHIPITKTSFFLGTLSLSGIPPLACFWSK--- 417
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFG 439
+ +++ + P + +F + + Y+ R + + G
Sbjct: 418 -DEILNDSWLYSPTFALIAWFTAGLTAFYMFRIYFLTFEG 456
>gb|AAF78990.1| (L75865) NADH dehydrogenase F [Guzmania monostachya]
Length = 691
Score = 145 bits (361), Expect = 2e-33
Identities = 124/445 (27%), Positives = 208/445 (45%), Gaps = 58/445 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 73 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTSSN 132
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TGS
Sbjct: 133 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSL 192
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F + E + ++ S LLF+ A K+ FPLHVW PDA
Sbjct: 193 EFRHLL-----EITNNLIQNNGVNSLFATLCASLLFVGAVA-KSAQFPLHVWLPDAMEGP 246
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AG++ + L+I++ P +I+ +G +T++
Sbjct: 247 TPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGVITLL 292
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 293 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGS 349
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 350 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSK--- 406
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPLPLA 456
+ +++ + PI + +F + + Y+ R T+ +F + TK+ +
Sbjct: 407 -DDILNDSWLYSPIFAVIAYFTAGLTAFYMFRVYLLTFDGYFRVHFKNYSSTKNGSF-YS 464
Query: 457 IGMAILGTLNVVFGVAPGIIAKELN 481
I + GT GV P ++ +N
Sbjct: 465 ISLWGKGTPR---GVNPNLLLSTMN 486
>emb|CAB52783.1| (AJ243656) transmembrane protein 53.3 kDa (conserved)
[Methanobacterium thermoautotrophicum]
Length = 498
Score = 144 bits (360), Expect = 3e-33
Identities = 118/517 (22%), Positives = 227/517 (43%), Gaps = 47/517 (9%)
Query: 1 MNELLLAVIFSPLVAGFLAWLFN-----VKGIREGIGVIGALIPLIGLIKLY-------- 47
MN L+ ++ P++ L L + VK + + ++ +IPL+ +
Sbjct: 1 MNPLIPVMVVLPILCALLLNLLHGRDRTVKALAVAVAILLPIIPLLAGYGAHYFGGYAPL 60
Query: 48 ---PSLGQGVSYTITVG---GFKLG--FMMSHLNWIFSMIAAVVGVSAILGMVSTAK--D 97
P++ G+ ++ F G ++ IF +I ++V A+L ++ +
Sbjct: 61 SENPAIASGLPDSVKSSYLYSFHPGITYLFGSAQRIFLLILSIVAFLAVLTSLNEVRKPS 120
Query: 98 GYEWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVL----KFNRAASLKYFLLS 153
G M I D+ ++F+EI A ++L + + +LKY ++
Sbjct: 121 GVYAFLMFMGTAAVTAIVLTDDIFNLYVFFEIAALAQVGVILCSGVERSYETALKYMMIG 180
Query: 154 IMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLA 213
+ A +L+ + ++ A TG+ + SDI V+ G+P F +A +LF
Sbjct: 181 GVAAPMLLLGVAILLALTGNVNISDIVFSMRSGLVNP---GSPLFL---LASSLILFGWL 234
Query: 214 FGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVR 273
+G G+ P H YS+ A+ L V+ F L L+ L
Sbjct: 235 YGT--GLPPFHTIKSAVYSKALPHGAAL----LQAFSVFTFTAL-------ALVILRMFY 281
Query: 274 SAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAA 333
P + + F +++G +A +Q D+RR+ + ++ ++GYI +GLG+GT+ I A
Sbjct: 282 HMPLVRWAMVFFSLAGMVLGISMALMQTDLRRMIGFLAVGELGYIGIGLGLGTAASISAG 341
Query: 334 IYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPL 393
++ A++ AL FL T+ Y TG+++ + GGL P + ++ +AG+PP
Sbjct: 342 LFQAVNEALITACIFLGFGTIFYMTGRSDPERIGGLIAYKPGLAGLVMLSGFIMAGVPPF 401
Query: 394 VGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIE-DTKDAP 452
F SK ++ +A I P LG ++ S + F+ +R Y+V+ P +E +++ P
Sbjct: 402 NVFQSKLMLIQASIQAGFPELGVVMILLSIVTFMTFLRAFYSVYLRPEPEGMELESESVP 461
Query: 453 LPLAIGMAILGTLNVVFGVAPGIIAKELNAIFGRTVI 489
+ +L + G+AP I + ++ +I
Sbjct: 462 RSTVFSLVVLILICTALGLAPWIATSQFTSLIQGLII 498
>gb|AAF78973.1| (L75899) NADH dehydrogenase F [Tillandsia complanata]
Length = 691
Score = 144 bits (360), Expect = 3e-33
Identities = 124/445 (27%), Positives = 207/445 (45%), Gaps = 58/445 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 73 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTSSN 132
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TGS
Sbjct: 133 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSL 192
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F + E + ++ S LLF+ A K+ FPLHVW PDA
Sbjct: 193 EFRYLL-----EITNNLIQNNGVNSLFATLCASLLFVXAVA-KSAQFPLHVWLPDAMEGP 246
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AG++ + L+I++ P I+ +G +T++
Sbjct: 247 TPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNFISLIGVITLL 292
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 293 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGS 349
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 350 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSK--- 406
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPLPLA 456
+ +++ + PI + +F + + Y+ R T+ +F + TK+ +
Sbjct: 407 -DDILNDSWLYSPIFAVIAYFTAGLTAFYMFRVYLLTFDGYFRVHFKNYSSTKNGSF-YS 464
Query: 457 IGMAILGTLNVVFGVAPGIIAKELN 481
I + GT GV P ++ +N
Sbjct: 465 ISLWGKGTPR---GVNPNLLLSTMN 486
>gb|AAF79008.1| (L75936) NADH dehydrogenase F [Tillandsia hamaleana]
Length = 691
Score = 144 bits (360), Expect = 3e-33
Identities = 124/445 (27%), Positives = 207/445 (45%), Gaps = 58/445 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 73 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTSSN 132
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TGS
Sbjct: 133 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSL 192
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F + E + ++ S LLF+ A K+ FPLHVW PDA
Sbjct: 193 EFRYLL-----EITNNLIQNNGVNSLFATLCASLLFVGAVA-KSAQFPLHVWLPDAMEGP 246
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AG++ + L+I++ P I+ +G +T++
Sbjct: 247 TPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNFISLIGVITLL 292
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 293 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGS 349
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 350 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFXSK--- 406
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPLPLA 456
+ +++ + PI + +F + + Y+ R T+ +F + TK+ +
Sbjct: 407 -DDILNDSWLYSPIFAVIAYFTAGLTAFYMFRVYLLTFDGYFRVHFQNYSSTKNGSF-YS 464
Query: 457 IGMAILGTLNVVFGVAPGIIAKELN 481
I + GT GV P ++ +N
Sbjct: 465 ISLWGKGTPR---GVNPNLLLSTMN 486
>pir||T12677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - chloroplast
Avena sativa (fragment) >gi|726164|gb|AAA64204.1|
(U22000) NADH dehydrogenase F [Avena sativa]
Length = 702
Score = 144 bits (359), Expect = 3e-33
Identities = 121/415 (29%), Positives = 201/415 (48%), Gaps = 50/415 (12%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL---GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
+ G+++ L I ++ VG+ ++ G +S +GY F +S T LG+ T+
Sbjct: 76 EFGYLIDPLTSIMLILITTVGILVLIYSDGYMSH-DEGYLRFFVYISFFNTSMLGLVTSS 134
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ + FWE++ S++++ F R +A K F+ + +G + +L+ I + TGS
Sbjct: 135 NLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGS 194
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F D+ + + + S L +LLFL A K+ FPLHVW PDA
Sbjct: 195 LEFRDLF-----KIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLHVWLPDAMEG 248
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVG 293
I + + AG+ F+L +L L I L + S +I+ +G +T+ +G
Sbjct: 249 PTPISALIHAATMVAAGI--FLLARLL---PLFISLPLIMS------LISLVGTITLFLG 297
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
LA Q DI+R AYS++SQ+GY+++ LGIG+ +AA++H I+HA K L FL +
Sbjct: 298 ATLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSGS 354
Query: 354 LIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFE 404
+I+ G + K GGL + +P T + LSL GIPPL F SK +
Sbjct: 355 IIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRSAFLWGTLSLCGIPPLACFWSK----D 410
Query: 405 AVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPL 453
++S + P G + F + + Y+ R T+ + + TK+ PL
Sbjct: 411 EILSNSWLYSPFFGIIASFTAGLTAFYMFRIYLLTFDGYLRVHFQNYSSTKEGPL 465
>pir||A70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoL1 -
Aquifex aeolicus >gi|2983742|gb|AAC07303.1| (AE000734)
NADH dehydrogenase I chain L [Aquifex aeolicus]
Length = 622
Score = 144 bits (359), Expect = 3e-33
Identities = 148/554 (26%), Positives = 250/554 (44%), Gaps = 91/554 (16%)
Query: 6 LAVIFSPLVAGFLAWLFNVKGIREGIGVIGA----LIPLIGLI------------KLYPS 49
L VIF+PL+A + LF K G G+I + L L L+ KLY
Sbjct: 7 LGVIFTPLIAFLIILLFGRKIGDLGSGIIASVGAGLTTLFSLVVALKAIHSPVHVKLYDF 66
Query: 50 LGQGVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGY-EWLFALMS- 107
L G +YT++ LGF L+ + +++ V + + +D + +W+F +
Sbjct: 67 LPIG-NYTLS-----LGFYFDSLSSLMALVVTFVATLIFVYSIGYMRDEFGKWVFKFYAY 120
Query: 108 ----LTGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA-----ASLKYFLLSIMGAY 158
L L I + +L+ F WE + AS++++ ++ AS + F+++ +G +
Sbjct: 121 LSLFLFAMLLIVLSDNLLGIFFGWEGVGLASYLLIGYYHEQKKATKASFEAFVMNRIGDW 180
Query: 159 AMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGV-- 216
L G+IY+ F +I+ F P ++D + + +L FG
Sbjct: 181 --LFIFGIIYSFY-LFKTLEITQIF------------PKVEEVDKYALGVATMLLFGGAV 225
Query: 217 -KAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSA 275
K+G FPLH W P+A + + + + AGVY LY + +
Sbjct: 226 GKSGQFPLHTWLPNAMAGPTPVSALLHAATMVAAGVYMVARLYPMF-----------EAT 274
Query: 276 PAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIY 335
P +I +G +T+ + + A+ DI+++ A+S++SQ+GY+ V LG+G G A++
Sbjct: 275 PQTLKLIVLIGAITMTMAALAGAVHNDIKKIIAFSTMSQLGYMFVALGVGDKGG---AMF 331
Query: 336 HAISHALFKGLFFLIVATLI--YRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPL 393
H +HA FK L FL +I + + GGL + MP T+ I LSLAG+ P
Sbjct: 332 HLTTHAFFKALLFLAAGAVITAFHHHLYDIFKMGGLKKYMPVTYVAFMIGALSLAGVFPF 391
Query: 394 VGFASKWLIFEAVI--SQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQ---RPSDIEDT 448
GF SK I ++ S L +LG +V F +A Y R + V+ G+ R +D
Sbjct: 392 SGFWSKDRIVASMYEWSGVLGVLGTIVAFITA---YYAFREGFLVFHGRERWREIYDKDV 448
Query: 449 KDAPLPLAIGMAILGTLNVVFGVAPGIIAKELNAIFGRTVIGGNIWELELGFGRYNALLV 508
+ + + M +LG L V+ G +FG + W + L G + +
Sbjct: 449 HEVEGVMTVPMGLLGFLTVLTG------------LFGLWL---EHWYVGLIGGEEKGIHL 493
Query: 509 TIWLV-IGLLIAGI 521
++ LV +G+ IAGI
Sbjct: 494 SVALVSLGVAIAGI 507
>gb|AAF22422.1|AF047815_1 (AF047815) NADH dehydrogenase [Emmenanthe penduliflora var.
penduliflora]
Length = 696
Score = 144 bits (359), Expect = 3e-33
Identities = 116/371 (31%), Positives = 178/371 (47%), Gaps = 40/371 (10%)
Query: 49 SLGQGVSYTITVGGFKL--GFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFA 104
S+ Q V I F L G+++ L I S++ VG+ ++ + GY FA
Sbjct: 59 SIYQYVWSWIITNNFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQGYLRFFA 118
Query: 105 LMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGA 157
MS T LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G
Sbjct: 119 YMSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRVGD 178
Query: 158 YAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVK 217
+ +L+ I Y TGSF F D+ F L T + L LL K
Sbjct: 179 FGLLLGILGFYWITGSFEFRDLFEVFNN------LISTNEVNFFFATLCALLLFAGAVAK 232
Query: 218 AGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPA 277
+ FPLHVW PDA I + + AG+ F++ +L L I L + +
Sbjct: 233 SAQFPLHVWLPDAMEGPTPISALIHAATMVAAGI--FLVARLL---PLFIVLPYIMN--- 284
Query: 278 FGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHA 337
IA +G +T+ +G LA Q+DI+R YS++SQ+GY+++ LG+G+ A++H
Sbjct: 285 ---FIALIGIITVFLGATLALAQKDIKRGLXYSTMSQLGYMMLALGMGS---YRNALFHL 338
Query: 338 ISHALFKGLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLA 388
I+HA K L FL ++I+ G + K GGL + +P T T + LSL
Sbjct: 339 ITHAYSKALLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTAFLLGTLSLC 398
Query: 389 GIPPLVGFASK 399
GIPPL F SK
Sbjct: 399 GIPPLACFWSK 409
>gb|AAF25171.1|AF182343_1 (AF182343) NADH dehydrogenase [Sucrea maculata]
Length = 704
Score = 144 bits (359), Expect = 3e-33
Identities = 117/414 (28%), Positives = 195/414 (46%), Gaps = 48/414 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAILGM--VSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I ++ VG+ ++ + +GY F +S T LG+ T+ +
Sbjct: 76 EFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNTSMLGLVTSSN 135
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ + FWE++ S++++ F R +A K F+ + +G + +L+ I + TGS
Sbjct: 136 LIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSL 195
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ + + + S L +LLFL A K+ FPLHVW PDA
Sbjct: 196 EFRDLF-----KIANNWIPNNGISSLLTTLCAFLLFLGAVA-KSAQFPLHVWLPDAMEGP 249
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG++ L+ L S P ++ +G +T+ +G
Sbjct: 250 TPISALIHAATMVAAGIFLLARLFPLFI-----------SLPLIMSFVSLVGTITLFLGA 298
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q DI+R AYS++SQ+GY+++ LGIG+ +AA++H I+HA K L FL +L
Sbjct: 299 TLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSGSL 355
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K GGL + +P T T LSL GIPPL F SK +
Sbjct: 356 IHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSK----DE 411
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPL 453
++S + P G + F + + Y+ R T+ + R + +TK + L
Sbjct: 412 ILSNSWLYSPFFGIIASFTAGLTAFYMFRIYLLTFDGYLRVRFQNYSNTKQSSL 465
>gb|AAF79015.1| (L75935) NADH dehydrogenase F [Guzmania sanguinea]
Length = 691
Score = 144 bits (359), Expect = 3e-33
Identities = 124/445 (27%), Positives = 208/445 (45%), Gaps = 58/445 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 73 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTSSN 132
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TGS
Sbjct: 133 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSL 192
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F + E + ++ S LLF+ A K+ FPLHVW PDA
Sbjct: 193 EFRYLL-----EITNNLIQNNGVNSLFATLCASLLFVGAVA-KSAQFPLHVWLPDAMEGP 246
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AG++ + L+I++ P +I+ +G +T++
Sbjct: 247 TPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGVITLL 292
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 293 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGS 349
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 350 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSK--- 406
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPLPLA 456
+ +++ + PI + +F + + Y+ R T+ +F + TK+ +
Sbjct: 407 -DDILNDSWLYSPIFAVIAYFTAGLTAFYMFRVYLLTFDGYFRVHFKNYSSTKNGSF-YS 464
Query: 457 IGMAILGTLNVVFGVAPGIIAKELN 481
I + GT GV P ++ +N
Sbjct: 465 ISLWGKGTPR---GVNPNLLLSTMN 486
>gb|AAF79018.1| (L75932) NADH dehydrogenase F [Guzmania nicaraguensis]
Length = 691
Score = 144 bits (359), Expect = 3e-33
Identities = 123/445 (27%), Positives = 209/445 (46%), Gaps = 58/445 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 73 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTSSN 132
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TGS
Sbjct: 133 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSL 192
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F + E + ++ S LLF+ A K+ FPLH+W PDA
Sbjct: 193 EFRYLL-----EITNNLIQNNGVNSLFATLCASLLFVGAVA-KSAQFPLHIWLPDAMEGP 246
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AG++ + L+I++ P +I+ +G +T++
Sbjct: 247 TPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNLISLIGVITLL 292
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 293 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGS 349
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 350 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSK--- 406
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPLPLA 456
+ +++ + PI + +F + + Y+ R T+ +F + TK++ +
Sbjct: 407 -DDILNDSWLYSPIFAVIAYFTAGLTAFYMFRVYLLTFDGYFRVHFKNYSSTKNSSF-YS 464
Query: 457 IGMAILGTLNVVFGVAPGIIAKELN 481
I + GT GV P ++ +N
Sbjct: 465 ISLWGKGTPR---GVNPNLLLSTMN 486
>emb|CAC03491.1| (AJ245816) NADH dehydrogenase subunit [Kickxia elatine]
Length = 707
Score = 144 bits (359), Expect = 3e-33
Identities = 121/397 (30%), Positives = 191/397 (47%), Gaps = 55/397 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L+ I SM+ VG+ ++ GY F MS T LG+ T+ +
Sbjct: 84 EFGYLIDPLSSIMSMLITTVGIMVLIYSDNYMAHDQGYLKFFCYMSFFSTSMLGLVTSSN 143
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I Y+ TGSF
Sbjct: 144 LIQIYIFWELVGVCSYLLIGFWFTRPLAATACQKAFVTNRVGDFGLLLGILGFYSITGSF 203
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ F + + P F V L + K+ FPLHVW PDA
Sbjct: 204 EFRDLFEIFNNLIYNNEIN--PPF----VTLCAVPLFAGAVAKSAQFPLHVWLPDAL--- 254
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
+ T I + + V G L+ L+ ++I P I+ +G +T+++G
Sbjct: 255 -EGPTPISAXXHAATMVAGIFLVARLLPLFIII--------PYIMNFISLIGIITVLLGA 305
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL ++
Sbjct: 306 TLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLGSGSV 362
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK------ 399
I+ G + K GGL + +P T T + LSL GIPPL F SK
Sbjct: 363 IHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILND 422
Query: 400 -WL---IFEAVISQNLPILGGMVFFGSAIGFVYLIRF 432
WL IF A+I+ L G F +YL+ F
Sbjct: 423 SWLYSPIF-AIIAWXTAGLTGFYMF-----XIYLLTF 453
>gb|AAG19145.1| (AE005012) F420H2:quinone oxidoreductase chain L; NuoL
[Halobacterium sp. NRC-1]
Length = 692
Score = 144 bits (359), Expect = 3e-33
Identities = 165/606 (27%), Positives = 265/606 (43%), Gaps = 77/606 (12%)
Query: 75 IFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLT--GALGIFTAQDLVVFFIFWEIMTF 132
I S++A +V V ++ M + G +A + L L A +L++ F+F+E++
Sbjct: 97 IVSLVAFLVHVFSLGYMNDEGEGGLHRYYAGLGLFTFSMLAFVVADNLLMAFMFFELVGL 156
Query: 133 ASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSF----SDISAF- 182
S++++ F + +A+ K FL++ G Y L+ + ++A G+ F AF
Sbjct: 157 CSYLLIGFHFRQQGPPSAAKKAFLVTRFGDYFFLIGVVAVFATFGTARFVATGEGAHAFP 216
Query: 183 -FGKEAVSTMLG-GT-PAFSK--LDV---------ALIYLLFLLAFGVKAGMFPLHVWAP 228
++A++ + G GT PA LDV +++ LL L K+ FPLH W P
Sbjct: 217 HMAEQALAAVGGEGTMPAHVAHFLDVVGMSAQQWFSVVGLLVLGGVIGKSAQFPLHTWLP 276
Query: 229 DAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGL 288
DA I + + AGVY L MYG + P +IA +GG
Sbjct: 277 DAMEGPTPVSALIHAATMVAAGVY----LVARMYGFYAL-------LPTVLAIIALVGGF 325
Query: 289 TIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFF 348
T + + ++++++++ AYS+ISQ GY+++GLG G G AA +H ++HA FK L F
Sbjct: 326 TALFAATMGVVKDELKQVLAYSTISQYGYMMLGLGTG---GYIAASFHLLTHAFFKALLF 382
Query: 349 LIVATLIYRTGKTE-FKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK-WLIFEAV 406
L ++I E D GGL +KMP T+ L+LAGI P GF SK +++EA+
Sbjct: 383 LGAGSVIIAMHHNENMWDMGGLRKKMPVTYYTFLSGSLALAGIVPFAGFWSKDEILYEAL 442
Query: 407 I--SQNLPILGGMVFFGSAIGF---VYLIRFTYAVWFGQRPSD-IEDTKDAPLPLAIGMA 460
I + + PIL G F Y R + G+ SD ED + +
Sbjct: 443 IYGAGDSPILLAAYAMGLLAVFFTGFYTFRMVVLTFHGEPRSDTAEDPHGVRWNVKFPLV 502
Query: 461 ILGTLNVVFG---VAPGIIAKELNAIFGRTVIGG--NIWELELGFGRYNALL-------- 507
+LG L G + P A L+ F T + G LG+ Y+ LL
Sbjct: 503 VLGVLAATVGLVNMTPVAEATGLHIEFLHTWLAGPEGTAFSALGYEHYHHLLESFAGYHA 562
Query: 508 --------VTIWLVIGLLIAGILYFLGAS------TRKVPVTDTYQSGNPVTMDYNLTIR 553
+ L + L AG+ + L + T K+ T N +Y + +
Sbjct: 563 ADIAPFVPAAVSLALALGGAGLAWLLYSGPAPTKHTEKLGAARTLLYNNYYQDEYQVWLA 622
Query: 554 RNFFLPLKEAVAFWLRISFDKLYRDVWKSIEDFAETARNYIYNGNVQAYAWYLAI-ILLI 612
+ LPL + + D + V SI F+ I +G V YA L + ++ +
Sbjct: 623 KGVTLPLARGADTFDQGVIDGIVNAV-SSISLFSGGRIRRIQDGIVSHYATMLTLGLVAL 681
Query: 613 LAAMGV 618
L GV
Sbjct: 682 LVVFGV 687
>gb|AAF79014.1| (L75904) NADH dehydrogenase F [Guzmania spectabilis]
Length = 693
Score = 143 bits (358), Expect = 4e-33
Identities = 124/445 (27%), Positives = 206/445 (45%), Gaps = 58/445 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 75 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTSSN 134
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TGSF
Sbjct: 135 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSF 194
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F + E + ++ S LLF+ A K+ FPLHVW PDA
Sbjct: 195 EFRYLL-----EITNNLIQNNGVNSLFATLCASLLFVGAVA-KSAQFPLHVWLPDAMEGP 248
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + G++ + L+I++ P I+ +G +T++
Sbjct: 249 TPISALIHXATMVAXGIFLVARLLPLFIVI--------------PYIMNFISLIGVITLL 294
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 295 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGS 351
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 352 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSK--- 408
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPLPLA 456
+ +++ + PI + +F + + Y+ R T+ +F + TK+ +
Sbjct: 409 -DDILNDSWLYSPIFAVIAYFTAGLTAFYMFRVYLLTFDGYFRVHFKNYSSTKNGSF-YS 466
Query: 457 IGMAILGTLNVVFGVAPGIIAKELN 481
I + GT GV P ++ +N
Sbjct: 467 ISLWGKGTPR---GVNPNLLLSTMN 488
>gb|AAG34770.1| (AF207968) NADH dehydrogenase subunit F [Cobaea scandens]
Length = 742
Score = 143 bits (358), Expect = 4e-33
Identities = 111/377 (29%), Positives = 180/377 (47%), Gaps = 52/377 (13%)
Query: 49 SLGQGVSYTITVGGFKL--GFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFA 104
S+ Q + I F L G+++ L I S++ VG+ ++ + GY FA
Sbjct: 67 SIYQYIGSWIITNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQGYLKFFA 126
Query: 105 LMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGA 157
MS T LG+ T+ +L+ +IFWE++ S++++ F R S K FL + +G
Sbjct: 127 YMSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRTLSANACQKAFLTNRVGD 186
Query: 158 YAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFG-- 215
+ +L+ I Y TGS F D+ F + +++++ ++L LL F
Sbjct: 187 FGLLLGIFGFYWITGSLEFRDVFEIFNNLIYN---------NEVNILFVFLCALLLFAGA 237
Query: 216 -VKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQ 271
K+ FPLHVW PDA I + + AG++ + L+I++
Sbjct: 238 VAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVI---------- 287
Query: 272 VRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIE 331
P I+ + +T+ +G LA Q+DI+R AYS++SQ+GY+++ LG+G+
Sbjct: 288 ----PYLMNFISLISIITVFLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YR 340
Query: 332 AAIYHAISHALFKGLFFLIVATLI--------YRTGKTE-FKDFGGLAEKMPFTFTMAFI 382
A++H I+HA K L FL +LI Y K++ GGL + +P T +
Sbjct: 341 IALFHLITHAYSKALLFLGSGSLIHSMETVVGYSPNKSQNMVLMGGLTKYVPITKISFLL 400
Query: 383 AILSLAGIPPLVGFASK 399
LSL GIPPL F SK
Sbjct: 401 GTLSLCGIPPLACFWSK 417
>pir||T13393 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Lithachne
pauciflora chloroplast (fragment)
>gi|755847|gb|AAA64697.1| (U21978) NADH dehydrogenase F
[Lithachne pauciflora]
Length = 703
Score = 143 bits (357), Expect = 6e-33
Identities = 116/414 (28%), Positives = 197/414 (47%), Gaps = 48/414 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I ++ VG+ ++ + +GY F +S T LG+ + +
Sbjct: 75 EFGYLIDPLTSIMLILITTVGILVLIYSDNYMSHDEGYLRFFVYISFFNTSMLGLVISSN 134
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ + FWE++ S++++ F RA A K F+ + +G + +L+ I + TGS
Sbjct: 135 LIQIYFFWELVGMCSYLLIGFWFTRAIAASACQKAFVTNRVGDFGLLLGILGFFWITGSL 194
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ + + + S L +LLFL A K+ FPLH+W PDA
Sbjct: 195 EFRDLF-----KIANNWIPDNGINSLLTTLCAFLLFLGAVA-KSAQFPLHIWLPDAMEGP 248
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
I + + AG++ L+ L + L + S ++ +G +T+ +G
Sbjct: 249 TPISALIHAATMVAAGIFLLARLF-----PLFVPLPLIMS------FVSLVGTITLFLGA 297
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q DI+R AYS++SQ+GY+++ LGIG+ +AA++H I+HA K L FL ++
Sbjct: 298 TLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSGSI 354
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K GGL + +P T T LSL GIPPL F SK +
Sbjct: 355 IHSMEPLVGYSPEKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSK----DE 410
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPL 453
++S + P G + FF + + Y+ R T+ + R + +TK+ L
Sbjct: 411 ILSNSWLYSPFFGIIAFFTAGLTAFYMFRIYLLTFDGYLRVRFQNYSNTKEGSL 464
>emb|CAB89015.1| (AL353870) probable NADH dehydrogenase I complex, subunit.
[Streptomyces coelicolor A3(2)]
Length = 967
Score = 143 bits (357), Expect = 6e-33
Identities = 133/487 (27%), Positives = 221/487 (45%), Gaps = 65/487 (13%)
Query: 71 HLNW---------IFSMIAAVVGVSAILGMVSTAKDGYEWL--FA--LMSLTGA-LGIFT 116
H++W + ++AA VG ++ S D L FA L++ TGA LG+
Sbjct: 65 HVDWALRLDALAELMVLLAAGVGTLVLVYCASYFDDRSRQLGRFAGNLLAFTGAMLGLVL 124
Query: 117 AQDLVVFFIFWEIMTFASFMMV-----LKFNRAASLKYFLLSIMGAYAMLVAIGLIYAKT 171
A DLV+ +IFWE+ T S++++ K NR ++L+ ++ +G MLV L+ +
Sbjct: 125 ADDLVLLYIFWELTTVFSYLLIGQTSDHKRNRRSALQALTVTALGGLTMLVGFLLLGHEA 184
Query: 172 GSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAY 231
G++ VS +L PA S + L+ + A K+ ++P +W P+A
Sbjct: 185 GTYR------------VSAILADPPAPSAALSTAVVLILVGALS-KSAIWPFSLWLPNAM 231
Query: 232 SETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYV------IAFL 285
+ + + + KAGVY L+ R APAF V + L
Sbjct: 232 AAPTPVSAYLHAAAMVKAGVY-------------LV----ARLAPAFADVTPWRPLLLVL 274
Query: 286 GGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKG 345
G +T+++GG A D++ + AY ++SQ+G + V G G AA + HALFK
Sbjct: 275 GSVTMLLGGWRALRLHDLKLVLAYGTVSQLGLLTVLTGAGRHDTGLAATAMILGHALFKA 334
Query: 346 LFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
FL+ + + TG + + GL ++P +A +A S+A +PPL+GF++K F+A
Sbjct: 335 PLFLVTGIVDHATGTRDLRKLSGLGRRLPAVCAVAVLAGASMAAVPPLLGFSAKEAAFQA 394
Query: 406 VISQNLPILGGM--VFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAI--GMAI 461
++ + + GSA+ Y +R+ + F ++P + DT P+P A A+
Sbjct: 395 LLDGSTGDRWALAAAVVGSALTTAYTLRYLWGA-FARKPG-LPDTAAHPVPAAFLAPPAV 452
Query: 462 LGTLNVVFGVAPGIIAKELNAIFGRTVIGGNIWELELGFGRYNALLVTIWLVIGLLIAGI 521
L +V G + L G+ + + L L G AL L G+
Sbjct: 453 LALACLVLGPGVSWLQGLLGTYAGQFPAPAHPYHLALWHGAGLAL----GLSGAAWAGGV 508
Query: 522 LYFLGAS 528
L FL AS
Sbjct: 509 LLFLAAS 515
>gb|AAF78974.1| (L75897) NADH dehydrogenase F [Ronnbergia petersii]
Length = 693
Score = 143 bits (357), Expect = 6e-33
Identities = 124/445 (27%), Positives = 204/445 (44%), Gaps = 58/445 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 75 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTSSN 134
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TGS
Sbjct: 135 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSL 194
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ E + ++ S LLF+ A K+ FPLHVW PDA
Sbjct: 195 EFRDLL-----EITNNLIQNNGVNSLFATLCASLLFVGAVA-KSAQFPLHVWLPDAMEGP 248
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + G++ + L+I++ P I+ +G +T++
Sbjct: 249 TPISALIHAATMVXXGIFLVARLLPLFIVI--------------PYIMNFISLIGVITLL 294
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 295 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGS 351
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 352 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSK--- 408
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPLPLA 456
+ +++ + PI + F + Y+ R T+ + D TK+ +
Sbjct: 409 -DEILNDSWLYSPIFAVIASFTAGFTAFYMFRVYLLTFDGYLRVHFQDYSSTKNGSF-YS 466
Query: 457 IGMAILGTLNVVFGVAPGIIAKELN 481
I + GT GV P ++ +N
Sbjct: 467 ISLWGKGTTR---GVNPNLLLSTMN 488
>gb|AAF78999.1| (L75912) NADH dehydrogenase F [Vriesea espinosae]
Length = 693
Score = 143 bits (357), Expect = 6e-33
Identities = 122/445 (27%), Positives = 207/445 (46%), Gaps = 58/445 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 75 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTSSN 134
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TGS
Sbjct: 135 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSL 194
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F + E + ++ S LLF+ A K+ FPLHVW PDA
Sbjct: 195 EFRYLL-----EITNNLIQNNGVNSLFATLCASLLFVGAVA-KSAQFPLHVWLPDAMEGP 248
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AG++ + L+I++ P I+ +G +T++
Sbjct: 249 TPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNFISLIGVITLL 294
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 295 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGS 351
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 352 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSK--- 408
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPLPLA 456
+ +++ + PI + +F + + Y+ R T+ +F + TK+
Sbjct: 409 -DDILNDSWLYSPIFAVIAYFTAGLTAFYMFRVYLLTFDGYFRVHFQNYSSTKNGSF--- 464
Query: 457 IGMAILGTLNVVFGVAPGIIAKELN 481
+++ G + GV P ++ +N
Sbjct: 465 YSISLWGK-GIPTGVNPNLLLSTMN 488
>gb|AAF79007.1| (L75937) NADH dehydrogenase F [Tillandsia secunda]
Length = 655
Score = 143 bits (357), Expect = 6e-33
Identities = 124/445 (27%), Positives = 207/445 (45%), Gaps = 58/445 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 37 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAXMSFFNTSMLGLVTSSN 96
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TGS
Sbjct: 97 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSL 156
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F + E + ++ S LLF+ A K+ FPLHVW PDA
Sbjct: 157 EFRYLL-----EITNNLIQNNGVNSLFATLCASLLFVGAVA-KSAQFPLHVWLPDAMEGP 210
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AG++ + L+I++ P I+ +G +T++
Sbjct: 211 TPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNFISLIGVITLL 256
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 257 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGS 313
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 314 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSK--- 370
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPLPLA 456
+ +++ + PI + +F + + Y+ R T+ +F + TK+ +
Sbjct: 371 -DDILNDSWLYSPIFAVIAYFTAGLTAFYMFRVYLLTFDGYFRVHFKNYSSTKNGSF-YS 428
Query: 457 IGMAILGTLNVVFGVAPGIIAKELN 481
I + GT GV P ++ +N
Sbjct: 429 ISLWGKGTPR---GVNPNLLLSTMN 450
>pir||T13391 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Lithachne
humilis chloroplast (fragment) >gi|755845|gb|AAA64696.1|
(U21977) NADH dehydrogenase F [Lithachne humilis]
Length = 706
Score = 143 bits (356), Expect = 8e-33
Identities = 117/414 (28%), Positives = 199/414 (47%), Gaps = 49/414 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I ++ VG+ ++ + +GY F +S T LG+ + +
Sbjct: 76 EFGYLIDPLTSIMLILITTVGILVLIYSDNYMSHDEGYLRFFVYISFFNTSMLGLVISSN 135
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ + FWE++ S++++ F RA A K F+ + +G + +L+ I + TGS
Sbjct: 136 LIQIYFFWELVGMCSYLLIGFWFTRAIAASACQKAFVTNRVGDFGLLLGILGFFWITGSL 195
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ + + + S L +LLFL A K+ FPLH+W PDA E
Sbjct: 196 EFRDLF-----KIANNWIPDNGINSLLTTLCAFLLFLGAVA-KSAQFPLHIWLPDAM-EG 248
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
+A+ + AG++ L+ L + L + S ++ +G +T+ +G
Sbjct: 249 PTPISALIHAAMVAAGIFLLARLF-----PLFVPLPLIMS------FVSLVGTITLFLGA 297
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q DI+R AYS++SQ+GY+++ LGIG+ +AA++H I+HA K L FL ++
Sbjct: 298 TLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSGSI 354
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K GGL + +P T T LSL GIPPL F SK +
Sbjct: 355 IHSMEPLVGYSPEKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSK----DE 410
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPL 453
++S + P G + FF + + Y+ R T+ + R + +TK+ L
Sbjct: 411 ILSNSWLYSPFFGIIAFFTAGLTAFYMFRIYLLTFDGYLRVRFQNYSNTKEGSL 464
>pir||H64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO13 -
Helicobacter pylori (strain 26695)
>gi|2314437|gb|AAD08316.1| (AE000631) NADH-ubiquinone
oxidoreductase, NQO13 subunit (NQO13) [Helicobacter
pylori 26695]
Length = 512
Score = 143 bits (356), Expect = 8e-33
Identities = 124/505 (24%), Positives = 223/505 (43%), Gaps = 62/505 (12%)
Query: 4 LLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQ----------- 52
LL VIF P+++ LA+ + + R ++ ALI L+ ++ L+
Sbjct: 8 LLSVVIFFPMLSALLAFFMSDQASR-AYAIVIALIELLLILLLWHGFDIQTAGMQFEEMK 66
Query: 53 ------GVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALM 106
GV+Y + V G L ++ + A+V + +++ + KD + L+
Sbjct: 67 ELVYQIGVNYHVGVDGIALFLLL---------LNAIVVLLSVIYVKERRKD---FAICLL 114
Query: 107 SLTGAL-GIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA----ASLKYFLLSIMGAYAML 161
L G L G+F++ +++ F+ FWEI ++ +F R + +K+FL + + + ML
Sbjct: 115 LLEGILMGVFSSLNMIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCML 174
Query: 162 VAI---GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKA 218
+ I G YA DI ++ FS +++ FL+ VK
Sbjct: 175 LGILYIGYDYANNYGMMSFDILDWYQLN-----------FSSGVKTWLFVAFLIGIAVKI 223
Query: 219 GMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAF 278
+FPLH W P AYS + + S +LSK G Y +L ++L L DL ++ P
Sbjct: 224 PLFPLHTWLPYAYSNAPTLGSVMLSALLSKMGTYA-LLRFLL---PLFPDLSEIYLTP-- 277
Query: 279 GYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAI 338
IA II GG LA Q+D++ L AYSS S +G +++G+ GI A++
Sbjct: 278 ---IAIAALCMIIYGGFLAYAQKDLKTLIAYSSFSHMGVVVLGVFSFNVEGISGAVFMMF 334
Query: 339 SHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFAS 398
+H + FL+ L R E FG +A+ P I +++ G+P +GF
Sbjct: 335 AHGIIVMGLFLLAGILEERASSLEIARFGSIAKSAPIFAAFFMIVLMANVGMPLSIGFVG 394
Query: 399 KWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQ---RPSDIEDTKDAPLPL 455
++L + P+L + + +Y++ V+FG + I +D
Sbjct: 395 EFLSLLGFFA-TYPLLAIIAGTSIILSAIYMLTSYKDVFFGNLKAGSNQISVFEDLNARE 453
Query: 456 AIGMAILGTLNVVFGVAPGIIAKEL 480
++++ L ++ G+ P ++ K +
Sbjct: 454 VGVLSVILALILILGIYPKVLLKPI 478
>sp|O86350|NUOL_MYCTU NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
L) >gi|7432513|pir||B70946 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain nuoL - Mycobacterium
tuberculosis (strain H37RV) >gi|3242279|emb|CAA16667.1|
(AL021646) nuoL [Mycobacterium tuberculosis]
Length = 633
Score = 143 bits (356), Expect = 8e-33
Identities = 123/469 (26%), Positives = 211/469 (44%), Gaps = 58/469 (12%)
Query: 30 GIGVIGALIPLIGLIKLYPSLGQGVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAIL 89
G+G + L ++G L ++ Q V I GG ++ F + + + GV +++
Sbjct: 48 GVGAM-LLADMLGRDGLERAIHQQVFTWIPAGGLQVDFGLQIDQLSMCFVLLISGVGSLI 106
Query: 90 GMVST---AKD-------GYEWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVL 139
+ S A+D GY LF L L + A + V+ ++ WE + AS++++
Sbjct: 107 HIYSVGYMAEDPDRRRFFGYLNLF----LASMLLLVVADNYVLLYVGWEGVGLASYLLIG 162
Query: 140 KFNR-----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGG 194
+ A+ K F+++ +G + V + L ++ G+ S++ + A G
Sbjct: 163 FWYHKPSAATAAKKAFVMNRVGDAGLAVGMFLTFSTFGTLSYAGVFA------------G 210
Query: 195 TPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGF 254
PA S+ + I LL LL K+ PL W DA I + + AGVY
Sbjct: 211 VPAASRAVLTAIGLLMLLGACAKSAQVPLQAWLGDAMEGPTPVSALIHAATMVTAGVY-- 268
Query: 255 ILLYILMYGKLLIDLGQVRS-APAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSIS 313
L++ G + + AP + +G +T++ G I+ ++DI+R A S+IS
Sbjct: 269 ----------LIVRSGPLYNLAPTAQLAVVIVGAVTLLFGAIIGCAKDDIKRALAASTIS 318
Query: 314 QVGYILVGLGIGTSLGIEAAIYHAISHALFK-GLFFLIVATLIYRTGKTEFKDFGGLAEK 372
Q+GY+++ G+G + G AI H ++H FK GLF A + + + + +GGL
Sbjct: 319 QIGYMVLAAGLGPA-GYAFAIMHLLTHGFFKAGLFLGSGAVIHAMHEEQDMRRYGGLRAA 377
Query: 373 MPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQ---NLPILGGMVFFGSAIGFVYL 429
+P TF +A L++ G+PP GF SK I EA + +LGG G+ + Y+
Sbjct: 378 LPVTFATFGLAYLAIIGVPPFAGFFSKDAIIEAALGAGGIRGSLLGGAALLGAGVTAFYM 437
Query: 430 IRFTYAVWFGQR-------PSDIEDTKDAP-LPLAIGMAILGTLNVVFG 470
R +FG++ P + P + LA+G G L V G
Sbjct: 438 TRVMLMTFFGEKRWTPGAHPHEAPAVMTWPMILLAVGSVFSGGLLAVGG 486
>gi|11467867 subunit 4 of NADH-plastoquinoneoxidoreductase [Nephroselmis
olivacea] >gi|5880796|gb|AAD54889.1|AF137379_112
(AF137379) subunit 4 of NADH-plastoquinoneoxidoreductase
[Nephroselmis olivacea]
Length = 500
Score = 143 bits (356), Expect = 8e-33
Identities = 107/402 (26%), Positives = 187/402 (45%), Gaps = 47/402 (11%)
Query: 71 HLNWIFSMIAAVVGVSAILGMVSTAKDGYEW-------LFALMSL---TGALGIFTAQDL 120
HL+W + + + + G ++T W LF + L TG LG+F QDL
Sbjct: 75 HLHWSLGVDGLSMPLVLLTGFITTLATLAAWPVTKNPRLFYFLMLAMYTGQLGVFVVQDL 134
Query: 121 VVFFIFWEIMTFASFMMVL----KFNRAASLKYFLLSIMGA-YAMLVAIGLIYAKTGSFS 175
++FF+ WE+ +++V K A+ K+ L + +G+ + +L A+ + + +
Sbjct: 135 LLFFLMWELELIPVYLLVSCWGGKKRLYAATKFILYTALGSIFILLGALTMPFMGIQGVT 194
Query: 176 FSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETD 235
F D+S +E +S L+Y FL+A+GVK P+H W PD + E
Sbjct: 195 F-DMSTLAYRE-----------YSLPVEILLYTGFLIAYGVKLPAIPVHTWLPDTHGEAH 242
Query: 236 QSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPA-FGYVIAFLGGLTIIVGG 294
S + +G+L K G Y I I++ + A A F + +G + II
Sbjct: 243 YSTCMLLAGILLKMGGYALIR----------INMNMLPHAHALFSPWLIGVGVVNIIYAA 292
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
+ + Q +++R AYSS+S +G++L+G+G + G+ A+ ISH L F + T
Sbjct: 293 LTSFAQRNLKRKIAYSSVSHMGFVLIGIGSLSEAGLNGAMLQMISHGLIGASLFFLAGTT 352
Query: 355 IYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNL--P 412
RT ++ GGLA MP TF + L+ +P + GF ++ L+F +++ P
Sbjct: 353 YDRTRTLVLEEMGGLATFMPKTFALFTACSLASLALPGMSGFFAELLVFLGLVTSEAYSP 412
Query: 413 ILGGMVFFGSAIGF----VYLIRFTYAVWFGQ---RPSDIED 447
++ AIG +YL+ +++G+ RP + D
Sbjct: 413 TFRAIMTVFEAIGILLTPIYLLSMLRQLFYGRSIGRPKALID 454
>gi|11466446 subunit 5 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
>gi|7259589|gb|AAF43890.1|AF166114_102 (AF166114)
subunit 5 of NADH-plastoquinoneoxidoreductase
[Mesostigma viride]
Length = 652
Score = 143 bits (356), Expect = 8e-33
Identities = 123/439 (28%), Positives = 210/439 (47%), Gaps = 58/439 (13%)
Query: 30 GIGVIGALIPLIGLIKLYPSLGQGVSYTITVGGF--KLGFMMSHLNWIFSMIAAVVGVSA 87
GI +I + + L I PS Q + I F ++G+ + L + +I V +
Sbjct: 49 GISLILSCLILFSQINATPSY-QWIFQWIVTNNFLLEIGYFVDPLTAVMLVIVTTVAILV 107
Query: 88 IL---GMVSTAKDGYEWLFALMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKF 141
++ G +S +GY FA +SL T LG+ + +L+ ++FWE++ S++++ F
Sbjct: 108 LIYTDGYMSY-DEGYVRFFAYLSLFTTSMLGLVLSPNLLQIYVFWELVGMCSYLLIGFWF 166
Query: 142 NRAASL----KYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPA 197
R A+ K F+ + +G + +L+ I Y TGSF F + +S L
Sbjct: 167 TRPAAADACQKAFVTNRVGDFGLLLGILGFYWMTGSFEF---------DVISMKLLQLAE 217
Query: 198 FSKLDVAL-IYLLFLLAFG--VKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGF 254
+ + L I+ FL+ G K+ FPLHVW PDA I + + AGV+
Sbjct: 218 YDNFNTQLAIFFGFLIFLGPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFLV 277
Query: 255 ILLY-ILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSIS 313
++ I L+DL IA+ G +T I+G +A Q D+++ AYS++S
Sbjct: 278 ARMFPIFSQFPFLMDL------------IAWTGAITAIIGATIAVTQVDLKKGLAYSTMS 325
Query: 314 QVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYR----TGKTEFKD---- 365
Q+GY+++ +G+G+ A+++H ++HA K L FL + I+ G K+
Sbjct: 326 QLGYMIMAMGMGS---YTASLFHLMTHAYSKALLFLSAGSTIHGMEPIVGFNPAKNQNMS 382
Query: 366 -FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQ---NLPILGGMVFFG 421
GG+ + MP T I LSL GIPPL F SK +A++S + P+L + +
Sbjct: 383 LMGGIRKYMPITGNAFLIGTLSLCGIPPLACFWSK----DAILSNAFVHSPLLWFIGWST 438
Query: 422 SAIGFVYLIRFTYAVWFGQ 440
+ + Y+ R + V+ G+
Sbjct: 439 AGLTSFYMFRMYFLVFEGE 457
>gb|AAF79016.1| (L75934) NADH dehydrogenase F [Guzmania rhonhofiana]
Length = 691
Score = 143 bits (356), Expect = 8e-33
Identities = 124/445 (27%), Positives = 206/445 (45%), Gaps = 58/445 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 73 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTSSN 132
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TGS
Sbjct: 133 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSL 192
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F + E + ++ S LLF+ A K+ FPLHVW PDA
Sbjct: 193 EFRYLL-----EITNNLIQNNGVNSLFATLCASLLFVGAVA-KSAQFPLHVWLPDAMEGP 246
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + AG++ + L+I++ P I+ +G +T++
Sbjct: 247 TPISALIHXATMVAAGIFLVARLLPLFIVI--------------PYIMNFISLIGVITLL 292
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 293 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGS 349
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 350 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSK--- 406
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPLPLA 456
+ +++ + PI + +F + + Y+ R T+ +F + TK+ +
Sbjct: 407 -DDILNDSWLYSPIFAVIAYFTAGLTAFYMFRVYLLTFDGYFRVHFKNYSSTKNGSF-YS 464
Query: 457 IGMAILGTLNVVFGVAPGIIAKELN 481
I + GT GV P ++ +N
Sbjct: 465 ISLWGKGTPR---GVNPNLLLSTMN 486
>gb|AAG25114.1| (AF275997) NADH dehydrogenase subunit F [Calochortus luteus]
Length = 657
Score = 143 bits (356), Expect = 8e-33
Identities = 113/364 (31%), Positives = 174/364 (47%), Gaps = 39/364 (10%)
Query: 55 SYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--T 109
S+TIT + G ++ L I S++ VG+ ++ + GY A MS T
Sbjct: 45 SWTITNDFSLEFGHLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQGYLRFIAYMSFSNT 104
Query: 110 GALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAI 164
LG+ T+ +L+ +IFWE++ ++++ F R +A K F+ + +G + +L+ I
Sbjct: 105 SMLGLVTSSNLIQIYIFWELVGMXPYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGI 164
Query: 165 GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLH 224
Y TGSF F D+ + V+ M+ S +LLF+ A K+ FPLH
Sbjct: 165 LGFYWITGSFEFRDLF-----KIVNNMMHSNGINSVFITLCAFLLFVGAIA-KSAQFPLH 218
Query: 225 VWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAF 284
VW PDA I + + AG++ L L R P I+
Sbjct: 219 VWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLF-----------RVIPYIMNFISL 267
Query: 285 LGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFK 344
+G +T+++G LA Q DI++ FAYS++SQ+GYI+ L IG+ AA++H I+HA +
Sbjct: 268 IGVITVLLGATLALAQRDIKKSFAYSTMSQLGYIMFALCIGS---YRAALFHLITHAYSR 324
Query: 345 GLFFLIVATLI--------YRTGKTE-FKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVG 395
L FL ++I Y K++ GGL +P T T LSL GIPPL
Sbjct: 325 ALLFLGSGSIIHSMEPIVGYSPNKSQNMVLMGGLTRYVPVTRTTFLSGTLSLCGIPPLAC 384
Query: 396 FASK 399
F SK
Sbjct: 385 FWSK 388
>pir||T13665 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Raddia
distichophylla chloroplast (fragment)
>gi|726178|gb|AAA64211.1| (U22007) NADH dehydrogenase F
[Raddia distichophylla]
Length = 704
Score = 142 bits (355), Expect = 1e-32
Identities = 121/415 (29%), Positives = 203/415 (48%), Gaps = 51/415 (12%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL---GMVSTAKDGYEWLFALMSL--TGALGIFTAQ 118
+ G+++ L I ++ VG+ ++ G +S +GY F +S T LG+ T+
Sbjct: 76 EFGYLIDPLTSIMLILITTVGILVLIYSDGYMSH-DEGYLRFFVYISFFNTSMLGLVTSS 134
Query: 119 DLVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGS 173
+L+ + FWE++ S++++ F R +A K F+ + +G + +L+ I + TGS
Sbjct: 135 NLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGS 194
Query: 174 FSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSE 233
F D+ + + + S L +LLFL A K+ FPLHVW PDA E
Sbjct: 195 LEFRDLF-----KIANNWIPNNGINSLLTTLCTFLLFLGAVA-KSAQFPLHVWLPDAM-E 247
Query: 234 TDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVG 293
+A+ + AG++ L+ L I L + S ++ +G +T+ +G
Sbjct: 248 GPTPISALIHATMVAAGIFLLARLF-----PLFIHLPLIMS------FVSLVGTITLFLG 296
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
LA Q DI+R AYS++SQ+GY+++ LGIG+ +AA++H I+HA K L FL +
Sbjct: 297 ATLALAQIDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSGS 353
Query: 354 LIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFE 404
LI+ G + K GGL + +P T T + LSL GIPPL F SK +
Sbjct: 354 LIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWSTLSLCGIPPLACFWSK----D 409
Query: 405 AVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPL 453
++S + P G + F + + Y+ R T+ + R + +TK++ L
Sbjct: 410 EILSNSWLYSPFFGIIASFTAGLTGFYMFRIYLLTFDGYLRVRFQNYSNTKESSL 464
>emb|CAB59307.1| (AJ236287) NADH dehydrogenase subunit F [Carphalea glaucescens]
Length = 733
Score = 142 bits (355), Expect = 1e-32
Identities = 110/371 (29%), Positives = 184/371 (48%), Gaps = 40/371 (10%)
Query: 49 SLGQGVSYTITVGGFKL--GFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFA 104
S+ Q V + + F L G+++ L I S++ VG+ ++ Y FA
Sbjct: 67 SIYQYVWSWVIINDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFA 126
Query: 105 LMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGA 157
MSL T LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G
Sbjct: 127 YMSLFSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRIGD 186
Query: 158 YAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVK 217
+ +L+ I + TGSF F D+ F V+ + S + V L +L K
Sbjct: 187 FGLLLGILGFFWITGSFEFRDLFEIFNNLIVANEV------SFVFVTLCAVLLFAGAVAK 240
Query: 218 AGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPA 277
+ FPLHVW PDA I + + G+ F++ +L L I + + ++
Sbjct: 241 SAQFPLHVWLPDAMEGPTPISALIHAATMVXXGI--FLVARLL---PLFIVIPYIMNS-- 293
Query: 278 FGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHA 337
I+ +G +T+++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H
Sbjct: 294 ----ISLIGIVTLLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHL 346
Query: 338 ISHALFKGLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLA 388
I+HA K L FL ++I+ G + K GGL + +P T + + LS+
Sbjct: 347 ITHAYSKALLFLGSGSIIHSMETVVGYSPHKSQNMALMGGLTKHVPLTKSTFLVGTLSIC 406
Query: 389 GIPPLVGFASK 399
GIPPL F SK
Sbjct: 407 GIPPLACFWSK 417
>gb|AAF08164.1| (AF130208) NADH dehydrogenase subunit F [Phyllonoma laticuspis]
Length = 735
Score = 142 bits (355), Expect = 1e-32
Identities = 109/371 (29%), Positives = 181/371 (48%), Gaps = 40/371 (10%)
Query: 49 SLGQGVSYTITVGGFKL--GFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFA 104
S+ Q V + + F L G+++ L I S++ VG+ ++ + GY FA
Sbjct: 58 SIYQYVWSWVIINDFSLEFGYLIDPLTSIMSILITTVGIPVLIYSDNYMSHDQGYLRFFA 117
Query: 105 LMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGA 157
MS T LG+ + +L+ +IFWE++ S++++ F R A K F+ + +G
Sbjct: 118 YMSFSSTSMLGLVISSNLIQIYIFWELVGICSYLLIGFWFTRPVAADACQKAFVTNRIGD 177
Query: 158 YAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVK 217
+ +L+ I Y TGSF F D+ F L + L V L +L + K
Sbjct: 178 FGLLLGILGFYWITGSFEFRDLFKIFNN------LINNNEVNFLFVTLCDVLLFVGAVAK 231
Query: 218 AGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPA 277
+ FPLHVW PDA I + + AG++ L ++ ++ P
Sbjct: 232 SAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIF----LVARLFPFFIV-------IPF 280
Query: 278 FGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHA 337
+I+ +G +TI++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ +++++H
Sbjct: 281 IMNLISLIGIITILLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YQSSLFHL 337
Query: 338 ISHALFKGLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLA 388
I+HA K L FL ++I+ G + K GGL + +P T + LSL
Sbjct: 338 ITHAYSKALLFLGSGSVIHSMETLVGYSPDKSQNMVLMGGLTKHVPITKNSFLLGTLSLC 397
Query: 389 GIPPLVGFASK 399
GIPP+ F SK
Sbjct: 398 GIPPIACFWSK 408
>gb|AAG25126.1| (AF276010) NADH dehydrogenase subunit F [Tulipa pulchella]
Length = 658
Score = 142 bits (355), Expect = 1e-32
Identities = 110/364 (30%), Positives = 175/364 (47%), Gaps = 39/364 (10%)
Query: 55 SYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--T 109
S+TI + + G ++ L I S++ + VG+ ++ + GY A MS T
Sbjct: 45 SWTINIDFSLEFGHLIDPLTSIMSILISTVGIMVLIYSDNYMSHDQGYLRFIAYMSFSNT 104
Query: 110 GALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAI 164
LG+ T+ +L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I
Sbjct: 105 SMLGLVTSSNLIQIYIFWELVGMXSYLLIGFWFTRPVAASACQKAFVTNRVGDFGLLLGI 164
Query: 165 GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLH 224
Y TGS F D+ E V+ ++ S +LLF+ A K+ FPLH
Sbjct: 165 LGFYWITGSLEFRDLF-----EIVNNLIRSNGVNSAFVTLCAFLLFVGAIA-KSAQFPLH 218
Query: 225 VWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAF 284
+W PDA I + + AG++ L L R P ++
Sbjct: 219 IWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLF-----------RVIPYIMNFVSL 267
Query: 285 LGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFK 344
+G +T+++G LA Q+DI+R FAYS++SQ+GYI+ L IG+ AA++H I+HA +
Sbjct: 268 IGVITVLLGATLALAQKDIKRSFAYSTMSQLGYIMFALCIGS---YRAALFHLITHAYSR 324
Query: 345 GLFFLIVATLI--------YRTGKTE-FKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVG 395
L FL ++I Y K++ GGL +P T LSL GIPPL
Sbjct: 325 ALLFLGSGSIINSMEPIVGYSPDKSQNMILMGGLTRYVPITRITFLSGTLSLCGIPPLAC 384
Query: 396 FASK 399
F SK
Sbjct: 385 FWSK 388
>gb|AAF08148.1| (AF130192) NADH dehydrogenase subunit F [Valeriana fauriei]
Length = 721
Score = 142 bits (354), Expect = 1e-32
Identities = 112/367 (30%), Positives = 179/367 (48%), Gaps = 45/367 (12%)
Query: 55 SYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--T 109
S+TI F+ G+++ L I S++ + VG+ ++ + GY F MS T
Sbjct: 64 SWTINSNFSFEFGYLIDPLTTIMSILISTVGILVLVYSDNYMSHDQGYLRFFGFMSFFST 123
Query: 110 GALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAI 164
LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I
Sbjct: 124 SMLGLVTSSNLIQIYIFWELVGICSYLLIGFWFTRPVAANACQKAFVTNRVGDFGLLLGI 183
Query: 165 GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLH 224
Y TGSF F D F K A + + F L V L +L L K+ FPLH
Sbjct: 184 LGFYWVTGSFEFRD----FFKIANNLIYNNEVHF--LFVTLCAVLLLSGAVAKSAQFPLH 237
Query: 225 VWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYV 281
+W PDA I + + AG++ + L+IL+ P
Sbjct: 238 IWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFILI--------------PYIMNF 283
Query: 282 IAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHA 341
I+ +G LT+ +G LA Q+DI+ AYS++ Q+GY+++ LG+G+ +A++H ++HA
Sbjct: 284 ISLIGILTVFLGATLALAQKDIKIGLAYSTMPQLGYMMLALGMGS---YRSALFHLMTHA 340
Query: 342 LFKGLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPP 392
K L FL ++I+ G + K GGL + +P T T + LSL GIPP
Sbjct: 341 YSKALLFLGSGSIIHSMEIIVGYSPKKSQNMALMGGLRKHVPITKTTFLLGTLSLCGIPP 400
Query: 393 LVGFASK 399
L F SK
Sbjct: 401 LACFWSK 407
>gb|AAF08149.1| (AF130193) NADH dehydrogenase subunit F [Abelia grandiflora]
Length = 722
Score = 142 bits (354), Expect = 1e-32
Identities = 113/408 (27%), Positives = 191/408 (46%), Gaps = 51/408 (12%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ + GY FA MS + LG+ T+ +
Sbjct: 75 EFGYLIDPLTTIMSILITTVGIMVLIYSDNYMSHDQGYLRFFAYMSFFSSSMLGLVTSSN 134
Query: 120 LVVFFIFWEIMTFASFMMV-----LKFNRAASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ A K F+ + +G + +L+ I Y TGSF
Sbjct: 135 LIQIYIFWELVGICSYLLIGFWLTRPVAANACQKAFVTNRVGDFGLLLGILGFYWITGSF 194
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D F L L V L +L K+ FPLH+W PDA
Sbjct: 195 EFRDFFEIFRN------LIDNNEVHFLFVTLCAVLLFAGAVAKSAQFPLHIWLPDAMEGP 248
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AGV+ + L+IL+ P I+ +G LT++
Sbjct: 249 TPISALIHAATMVAAGVFLVARLLPLFILI--------------PHIMNFISLIGILTVL 294
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA K L FL
Sbjct: 295 LGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHAYSKALLFLGS 351
Query: 352 ATLI--------YRTGKTE-FKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I Y K++ GGL + +P T T + LSL GIPPL F SK
Sbjct: 352 GSIIHAMETIVGYSPNKSQNMVLMGGLRKHVPITKTTFLLGTLSLCGIPPLACFWSK--- 408
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIED 447
+ +++ + PI G + + + + Y+ R + G ++ ++
Sbjct: 409 -DEILNDSWLYSPIFGIIAWSTAGLTAFYMFRIYLLTFEGHLNANFQN 455
>gb|AAF79004.1| (L75898) NADH dehydrogenase F [Tillandsia bergeri]
Length = 691
Score = 142 bits (354), Expect = 1e-32
Identities = 123/445 (27%), Positives = 207/445 (45%), Gaps = 58/445 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA M T LG+ T+ +
Sbjct: 73 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMGFFNTSMLGLVTSSN 132
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TGS
Sbjct: 133 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSL 192
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F + E + ++ S LLF+ A K+ FPLHVW PDA
Sbjct: 193 EFRYLL-----EITNNLIQNNGVNSLFATLCASLLFVGAVA-KSAQFPLHVWLPDAMEGP 246
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + AG++ + L+I++ P I+ +G +T++
Sbjct: 247 TPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNFISLIGVITLL 292
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 293 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGS 349
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 350 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSK--- 406
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPLPLA 456
+ +++ + PI + +F + + Y+ R T+ +F + +TK+ +
Sbjct: 407 -DDILNDSWLYSPIFAVIAYFTAGLTAFYMFRVYLLTFDGYFRVHFKNYSNTKNGSF-YS 464
Query: 457 IGMAILGTLNVVFGVAPGIIAKELN 481
I + GT GV P ++ +N
Sbjct: 465 ISLWGKGTPR---GVNPNLLLSTMN 486
>pir||T12221 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Sanango sp.
Bremer 3352 chloroplast (fragment)
>gi|2605759|gb|AAB84411.1| (AF027283) NADH dehydrogenase
[Sanango sp. Bremer 3352]
Length = 727
Score = 141 bits (353), Expect = 2e-32
Identities = 111/370 (30%), Positives = 182/370 (49%), Gaps = 51/370 (13%)
Query: 55 SYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAILGMVS-TAKD-GYEWLFALMSL--T 109
S+T+T + G+++ L I SM+ VG+ ++ + A D GY F+ MS T
Sbjct: 65 SWTLTNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAHDRGYLRFFSYMSFFST 124
Query: 110 GALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAMLVAI 164
LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G + +L+ I
Sbjct: 125 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGI 184
Query: 165 GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFG---VKAGMF 221
Y TGSF F D+ F +++++ + L L F K+ F
Sbjct: 185 LGFYWITGSFEFRDLFEIFNNLIY---------YNEVNSPFVTLCAALLFAGAVAKSAQF 235
Query: 222 PLHVWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAF 278
PLHVW PDA I + + AGV+ + L+I++ P
Sbjct: 236 PLHVWLPDAMEGPTPISALIHAATMVAAGVFLVARLLPLFIVI--------------PYI 281
Query: 279 GYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAI 338
+I+ +G +T+++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I
Sbjct: 282 MNLISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLI 338
Query: 339 SHALFKGLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAG 389
+HA K L FL ++I+ G + K GGL + +P T LSL G
Sbjct: 339 THAYSKALLFLGSGSIIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKISFLFGTLSLCG 398
Query: 390 IPPLVGFASK 399
IPPL F SK
Sbjct: 399 IPPLACFWSK 408
>gb|AAF79011.1| (L75880) NADH dehydrogenase F [Tillandsia fraseri]
Length = 695
Score = 141 bits (353), Expect = 2e-32
Identities = 123/445 (27%), Positives = 206/445 (45%), Gaps = 58/445 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 75 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTSSN 134
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TGS
Sbjct: 135 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSL 194
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F + E + ++ S LLF+ A K+ FPLHVW PDA
Sbjct: 195 EFRYLL-----EITNNLIQNNGVNSLFATLCASLLFVGAVA-KSAQFPLHVWLPDAMEGP 248
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + + G++ + L+I++ P I+ +G +T++
Sbjct: 249 TPISALIHAATMVXXGIFLVARLLPLFIVI--------------PYIMNFISLIGVITLL 294
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 295 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGS 351
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 352 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSK--- 408
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPLPLA 456
+ +++ + PI + +F + + Y+ R T+ +F + TK+ +
Sbjct: 409 -DDILNDSWLYSPIFAVIAYFTAGLTAFYMFRVYLLTFDGYFRVHFKNYSSTKNGSF-YS 466
Query: 457 IGMAILGTLNVVFGVAPGIIAKELN 481
I + GT GV P ++ +N
Sbjct: 467 ISLWGKGTPR---GVNPNLLLSTMN 488
>gb|AAF79012.1| (L75879) NADH dehydrogenase F [Tillandsia dodsonii]
Length = 693
Score = 141 bits (353), Expect = 2e-32
Identities = 123/445 (27%), Positives = 206/445 (45%), Gaps = 58/445 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 73 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTSSN 132
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TG+
Sbjct: 133 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGTL 192
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F + E + ++ S LLF+ A K+ FPLHVW PDA
Sbjct: 193 EFRYLL-----EITNNLIQNNGVNSLFATLCASLLFVGAVA-KSAQFPLHVWLPDAMEGP 246
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + AG++ + L+I++ P I+ +G +T++
Sbjct: 247 TPISALIHXATMVAAGIFLVARLLPLFIVI--------------PYIMNFISLIGVITLL 292
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 293 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGS 349
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 350 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSK--- 406
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPLPLA 456
+ +++ + PI + +F + + Y+ R T+ +F + TK+ +
Sbjct: 407 -DDILNDSWLYSPIFAVIAYFTAGLTAFYMFRVYLLTFDGYFRVHFKNYSSTKNGSF-YS 464
Query: 457 IGMAILGTLNVVFGVAPGIIAKELN 481
I + GT GV P ++ +N
Sbjct: 465 ISLWGKGTPR---GVNPNLLLSTMN 486
>gb|AAB48066.1| (L36393) NADH dehydrogenase subunit [Borago officinalis]
Length = 693
Score = 141 bits (352), Expect = 2e-32
Identities = 113/368 (30%), Positives = 180/368 (48%), Gaps = 47/368 (12%)
Query: 55 SYTITVGGFKLGF--MMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL-- 108
S+TI F L F ++ L I S++ VG+ ++ + GY FA MS
Sbjct: 66 SWTIN-NDFSLEFXXLIDPLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMSFFS 124
Query: 109 TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRAASL----KYFLLSIMGAYAMLVA 163
T LG+ T+ +L+ +IFWE++ S++++ F R A+ K F+ + +G + +L+
Sbjct: 125 TSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFARPAAANACQKAFVTNRLGDFGLLLG 184
Query: 164 IGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPL 223
I Y TGSF F D+ F K +S + + L +L K+ FPL
Sbjct: 185 ILGFYWITGSFEFLDLFEIF-KNLISNN-----EVNLIFATLCAVLLFTGAIAKSAQFPL 238
Query: 224 HVWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGY 280
HVW PDA I + AG++ + L+I++ P
Sbjct: 239 HVWLPDAMEGPTPISALIHXATMVXAGIFLVARLLPLFIVI--------------PYIMN 284
Query: 281 VIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISH 340
IA +G +T+++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ + A++H I+H
Sbjct: 285 FIALIGIITVLLGATLAIAQKDIKRGLAYSTMSQLGYMMLALGMGS---YQNALFHLITH 341
Query: 341 ALFKGLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIP 391
A K L FL ++I+ G + K GGL + +P T T + LSL+GIP
Sbjct: 342 AYSKALLFLGSGSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLSGIP 401
Query: 392 PLVGFASK 399
PL F SK
Sbjct: 402 PLACFWSK 409
>pir||B70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoL3 -
Aquifex aeolicus >gi|2983794|gb|AAC07352.1| (AE000737)
NADH dehydrogenase I chain L [Aquifex aeolicus]
Length = 644
Score = 141 bits (352), Expect = 2e-32
Identities = 147/554 (26%), Positives = 249/554 (44%), Gaps = 91/554 (16%)
Query: 6 LAVIFSPLVAGFLAWLFNVKGIREGIGVIGA----LIPLIGLI------------KLYPS 49
L VIF+PL+A + F K G G+I + L L L+ KLY
Sbjct: 4 LFVIFTPLIAFLIILAFGRKIGDLGSGIIASVGAGLTTLFSLVVALKAIHSPIHVKLYDF 63
Query: 50 LGQGVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGY-EWLFALMS- 107
L G +YT++ LGF L+ + +++ V + + +D + +W+F +
Sbjct: 64 LPIG-NYTLS-----LGFYFDSLSSLMALVVTFVATLIFVYSIGYMRDEFGKWVFKFYAY 117
Query: 108 ----LTGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA-----ASLKYFLLSIMGAY 158
L L I + +L+ F WE + AS++++ ++ AS + F+++ +G +
Sbjct: 118 LSLFLFAMLLIVLSDNLLGIFFGWEGVGLASYLLIGYYHEQKKATKASFEAFVMNRIGDW 177
Query: 159 AMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGV-- 216
L G+IY+ F +I+ F P ++D + + +L FG
Sbjct: 178 --LFIFGIIYSFY-LFKTLEITQIF------------PKVEEVDKYALGVATMLLFGGAV 222
Query: 217 -KAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSA 275
K+G FPLH W P+A + + + + AGVY LY + +
Sbjct: 223 GKSGQFPLHTWLPNAMAGPTPVSALLHAATMVAAGVYMVARLYPMF-----------EAT 271
Query: 276 PAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIY 335
P +I +G +T+ + + A+ DI+++ A+S++SQ+GY+ V LG+G G A++
Sbjct: 272 PQTLKLIVLIGAITMTMAALAGAVHNDIKKIIAFSTMSQLGYMFVALGVGDKGG---AMF 328
Query: 336 HAISHALFKGLFFLIVATLI--YRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPL 393
H +HA FK L FL +I + + GGL + MP T+ I LSLAG+ P
Sbjct: 329 HLTTHAFFKALLFLAAGAVITAFHHHLYDIFKMGGLKKYMPVTYVAFMIGALSLAGVFPF 388
Query: 394 VGFASKWLIFEAVI--SQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQ---RPSDIEDT 448
GF SK I ++ S L +LG +V F +A Y R + V+ G+ R +D
Sbjct: 389 SGFWSKDRIVASMYEWSGVLGVLGTIVAFITA---YYAFREGFLVFHGRERWREIYDKDV 445
Query: 449 KDAPLPLAIGMAILGTLNVVFGVAPGIIAKELNAIFGRTVIGGNIWELELGFGRYNALLV 508
+ + + M +LG L V+ G +FG + W + L G + +
Sbjct: 446 HEVEGVMTVPMGLLGFLTVLTG------------LFGLWL---EHWYVGLIGGEEKGIHL 490
Query: 509 TIWLV-IGLLIAGI 521
++ LV +G+ IAGI
Sbjct: 491 SVALVSLGVAIAGI 504
>pir||H71084 hypothetical protein PH0941 - Pyrococcus horikoshii
>gi|3257355|dbj|BAA30038.1| (AP000004) 481aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 481
Score = 141 bits (352), Expect = 2e-32
Identities = 128/482 (26%), Positives = 224/482 (45%), Gaps = 68/482 (14%)
Query: 6 LAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQGVSYTI------- 58
+ ++ P++ L ++F I EG +PL +K+ +G + +
Sbjct: 4 IVMVLGPVIFSILVYIFGTFRI-EGTFRAKFRLPLAQEVKILYFIGIFLPMLLLPFVQGG 62
Query: 59 TVGGF--KLGFMMS--HLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTGALGI 114
VG + +LG ++ ++ F + +V ++ L ++ A + E L+ G +G
Sbjct: 63 VVGNYPRELGIEVNLDFISMTFILAEFIVFGTSSLYLLPRATNWKELSLLLLMHAGLIGA 122
Query: 115 FTAQDLVVFFIFWEIMTFASFMMVLKFNRAASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
F ++D F+IF E+ + +S+ ++ ++ A+ Y +LS+ +Y ++A+G+IY +TG
Sbjct: 123 FISKDYFNFYIFMELSSVSSYALIASKDKKAAFNYLILSMTASYIFILALGMIYFQTG-- 180
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
+ E S + G + L +A + L+ +KAG+FPLH+W PDA+S
Sbjct: 181 -------YLNVELASRV--GLRDDTPLRLAAVALM------LKAGIFPLHMWLPDAHSNA 225
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
++I SG++ KA +YG I LL LG F Y L++I G
Sbjct: 226 KTYVSSILSGIVVKAPIYGLI---------LLSRLGNFEFLKPFAY-------LSMIFGV 269
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
++A LQ + +RL AY ++SQ+GYIL LG+ TS I A ++++HA+FK FL V +
Sbjct: 270 LMAILQFNAKRLLAYHTVSQMGYIL--LGVSTS-NITGATLYSLAHAIFKSGLFLGVGGI 326
Query: 355 IYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPIL 414
+ + E G + + M +AI +G+ +G K + V S+ I+
Sbjct: 327 VDTRRRMELNKLGSKNSLLLISILMLSLAI---SGLGVTIGGVGK---AQLVTSKLDKII 380
Query: 415 GGMVFFGSAIGFVYLIRFTYAVW--FGQRPSDIEDTKDAPLPLAIGMAILGTLNVVFGVA 472
V FG+A F + Y +W G PS+ + I GTL + G
Sbjct: 381 IYAVSFGTAFSF---SKLNYYLWKGHGNEPSNYS---------VLPSLISGTLAFILGFM 428
Query: 473 PG 474
G
Sbjct: 429 LG 430
>pir||T12559 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Arrabidaea
pubescens chloroplast (fragment)
>gi|3851727|gb|AAC72416.1| (AF102625) NADH dehydrogenase
subunit [Arrabidaea pubescens]
Length = 698
Score = 141 bits (352), Expect = 2e-32
Identities = 108/367 (29%), Positives = 178/367 (48%), Gaps = 45/367 (12%)
Query: 55 SYTITVG-GFKLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--T 109
S+T+ G + G+++ L I M+ VG+ ++ +GY FA MS T
Sbjct: 66 SWTLDNGFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMAHDEGYLRFFAYMSFFST 125
Query: 110 GALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA-----ASLKYFLLSIMGAYAMLVAI 164
LG+ T+ +L+ +IFWE++ S++++ ++ A K F+ + +G + +L+ I
Sbjct: 126 SMLGLVTSSNLLQIYIFWELVGMCSYLLIGFWSTRPPAANACQKAFVTNRVGDFGLLLGI 185
Query: 165 GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLH 224
Y TGSF F D+ F +S P V L L + K+ FPLH
Sbjct: 186 LGFYWITGSFEFRDLFEIFNN-LISNNEVNCPF-----VTLCAALLFVGAVAKSAQFPLH 239
Query: 225 VWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYV 281
VW PDA I + + AG++ + L+I++ P +
Sbjct: 240 VWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVI--------------PYIMNL 285
Query: 282 IAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHA 341
I+ +G +T+++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H I+HA
Sbjct: 286 ISLIGLITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHLITHA 342
Query: 342 LFKGLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPP 392
K L FL ++I+ G + K GGL + +P T + LSL GIPP
Sbjct: 343 YSKALLFLGSGSVIHSMETIVGYSPDKSQNMVLMGGLRKHVPITKASFLLGTLSLCGIPP 402
Query: 393 LVGFASK 399
L F SK
Sbjct: 403 LACFWSK 409
>gb|AAF79005.1| (L75939) NADH dehydrogenase F [Tillandsia utriculata]
Length = 691
Score = 141 bits (352), Expect = 2e-32
Identities = 123/445 (27%), Positives = 205/445 (45%), Gaps = 58/445 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 73 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTSSN 132
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TGS
Sbjct: 133 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSL 192
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F + E + ++ S LLF+ A K+ FPLHVW PDA
Sbjct: 193 EFRYLL-----EITNNLIQNNGVNSLFATLCASLLFVGAVA-KSAQFPLHVWLPDAMEGP 246
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + G++ + L+I++ P I+ +G +T++
Sbjct: 247 TPISALIHXATMVXXGIFLVARLLPLFIVI--------------PYIMNFISLIGVITLL 292
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 293 LGATLALAQRDIKKSLAYSTMSQLGYIILALGIGS---YRAALFHLITHAYSKALLFLGS 349
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 350 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSK--- 406
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPLPLA 456
+ +++ + PI + +F + + Y+ R T+ +F + TK+ +
Sbjct: 407 -DDILNDSWLYSPIFAVIAYFTAGLTAFYMFRVYLLTFDGYFRVHFKNYSSTKNGSF-YS 464
Query: 457 IGMAILGTLNVVFGVAPGIIAKELN 481
I + GT GV P ++ +N
Sbjct: 465 ISLWGKGTPR---GVNPNLLLSTMN 486
>gi|11467595 NADH dehydrogenase, subunit 4 [Allomyces macrogynus]
>gi|2147762|pir||S63659 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 4 - Allomyces macrogynus
mitochondrion >gi|1236425|gb|AAC49242.1| (U41288) NADH
dehydrogenase, subunit 4 [Allomyces macrogynus]
Length = 482
Score = 141 bits (351), Expect = 3e-32
Identities = 121/445 (27%), Positives = 199/445 (44%), Gaps = 49/445 (11%)
Query: 51 GQGVSYTIT-VGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLT 109
GQG+ + I V G L F++ + + + + IL + +L L+ L
Sbjct: 68 GQGLCHLIIGVDGISLFFVI---------LTSFLTIPIILTPPYNGESPTAYLITLLILE 118
Query: 110 GAL-GIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA-----ASLKYFLLSIMGAYAMLVA 163
L +F DL++F+I +E + F+++ + A+ +FL +++G+ ML+
Sbjct: 119 SMLIAVFVVLDLLLFYICFETVLIPMFLIIGIWGSKVRKIMAAYHFFLYTLLGSLFMLLG 178
Query: 164 IGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPL 223
I +IY +TG+ + + A G T S L++L F L+F VK MFP+
Sbjct: 179 IIVIYYQTGTTDYQYLLAVLG----------TAESSLTRENLLWLTFFLSFAVKVPMFPV 228
Query: 224 HVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIA 283
+ W P A+SE + I +G+L K YGF+ I ++ A Y
Sbjct: 229 YGWLPLAHSEAPTGGSMILAGILLKLSGYGFLRYSIPLFPN------------ASNYFTP 276
Query: 284 FLGGLTIIVGGILAAL-----QEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAI 338
F+ LT+ V GIL ++ Q D++ + AYSSIS + ++ + +GIE A++ I
Sbjct: 277 FV--LTLAVIGILYSIFACFRQTDLKSVIAYSSISHMNIVIAAIFSDNIIGIEGALFMMI 334
Query: 339 SHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFAS 398
SH + F V L RTG + GL MP FI IL+ +P +GF
Sbjct: 335 SHGIVSSALFFCVGALYDRTGTRILAYYRGLTMVMPLFSLCFFILILNNMAVPGGIGFIG 394
Query: 399 KWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLAIG 458
++L F + N PI+ + +G Y I T + FG + D +
Sbjct: 395 EFLCFLGIFKTN-PIICLLASLSIVLGAAYNIFLTNRLLFGSLSKYFKSYNDLTRREFMI 453
Query: 459 MAILGTLNVVFGVAPGIIAKELNAI 483
+ L+++ G+ P II LNAI
Sbjct: 454 LLPFVFLSILLGLCPNII---LNAI 475
>emb|CAB59298.1| (AJ236284) NADH dehydrogenase subunit F [Anthospermum herbaceum]
Length = 736
Score = 141 bits (351), Expect = 3e-32
Identities = 112/371 (30%), Positives = 180/371 (48%), Gaps = 40/371 (10%)
Query: 49 SLGQGVSYTITVGGFKL--GFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFA 104
S+ Q V + V F L G+++ L I S++ VG+ ++ GY FA
Sbjct: 67 SIYQYVWSWVIVNDFSLDFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQGYLRFFA 126
Query: 105 LMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGA 157
MS T LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G
Sbjct: 127 YMSFFSTSMLGLVTSSNLIEIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRIGD 186
Query: 158 YAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVK 217
+ +L+ I + TGSF F D+ F + + L V L +L K
Sbjct: 187 FGLLLGILGFFWITGSFEFRDLFEIFNNLIEDNEV------NFLFVTLCAVLXFAGAVAK 240
Query: 218 AGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPA 277
+ FPLHVW PDA + T I + + + V G I L + ++ P
Sbjct: 241 SAQFPLHVWLPDAM----EGPTPISALIPAATMVAGGIFLVARLLPLFIV-------IPY 289
Query: 278 FGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHA 337
I+ +G +T+++G LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A++H
Sbjct: 290 IMNFISLVGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSALFHL 346
Query: 338 ISHALFKGLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLA 388
I+HA K L FL ++I+ G + K GGL + +P T + + LSL
Sbjct: 347 ITHAYSKALLFLGSGSIIHSMETVVGYSPHKSQNMALMGGLTKHVPITKSTFLVGTLSLC 406
Query: 389 GIPPLVGFASK 399
GIPPL F SK
Sbjct: 407 GIPPLACFWSK 417
>gb|AAF22390.1|AF047783_1 (AF047783) NADH dehydrogenase [Hesperochiron pumilis]
Length = 696
Score = 141 bits (351), Expect = 3e-32
Identities = 113/374 (30%), Positives = 175/374 (46%), Gaps = 46/374 (12%)
Query: 49 SLGQGVSYTITVGGFKL--GFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFA 104
S+ Q V I F L G+++ L I S++ VG+ ++ + GY FA
Sbjct: 59 SIYQSVWSWIINNNFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQGYLRFFA 118
Query: 105 LMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGA 157
MS T LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G
Sbjct: 119 YMSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFVTNRVGD 178
Query: 158 YAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVK 217
+ +L+ I Y TGSF F D+ F L T + L +L K
Sbjct: 179 FGLLLGILGFYWITGSFEFRDLFEVFNN------LISTNEVNFCFTTLCAVLLFAGAVAK 232
Query: 218 AGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRS 274
+ FPLHVW PDA I + + AG++ + L+I++
Sbjct: 233 SAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVI------------- 279
Query: 275 APAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAI 334
P IA +G +T+ +G LA Q+DI+R AYS++SQ+GY+++ LG+G A+
Sbjct: 280 -PYIMNFIALIGIITVFLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGX---YRNAL 335
Query: 335 YHAISHALFKGLFFLIVATLI--------YRTGKTE-FKDFGGLAEKMPFTFTMAFIAIL 385
+H I+HA K L FL ++I Y K++ GGL + +P T + L
Sbjct: 336 FHLITHAYSKALLFLGSGSVIHSMETVVGYSPNKSQNMVLMGGLTKHVPITKAAFLLGTL 395
Query: 386 SLAGIPPLVGFASK 399
SL GIPPL F SK
Sbjct: 396 SLCGIPPLACFWSK 409
>gb|AAF79010.1| (L75881) NADH dehydrogenase F [Tillandsia funckiana]
Length = 691
Score = 141 bits (351), Expect = 3e-32
Identities = 123/445 (27%), Positives = 205/445 (45%), Gaps = 58/445 (13%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I S++ VG+ ++ GY FA MS T LG+ T+ +
Sbjct: 73 EFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTSSN 132
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ +IFWE++ S++++ F R +A K F+ + +G + +L+ I Y TGS
Sbjct: 133 LIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITGSL 192
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F + E + ++ S LLF+ A K+ FPLHVW PDA
Sbjct: 193 EFRYLL-----EITNNLIQNNGVNSLFATLCASLLFVGAVA-KSAQFPLHVWLPDAMEGP 246
Query: 235 DQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTII 291
I + G++ + L+I++ P I+ +G +T++
Sbjct: 247 TPISALIHXATMVXXGIFLVARLLPLFIVI--------------PYIMNFISLIGVITLL 292
Query: 292 VGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIV 351
+G LA Q DI++ AYS++SQ+GYI++ LGIG+ AA++H I+HA K L FL
Sbjct: 293 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIGS---YRAALFHLITHAYSKALLFLGS 349
Query: 352 ATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLI 402
++I+ G + K GGL +P T T + LSL GIPPL F SK
Sbjct: 350 GSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSK--- 406
Query: 403 FEAVISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPLPLA 456
+ +++ + PI + +F + + Y+ R T+ +F + TK+ +
Sbjct: 407 -DDILNDSWLYSPIFAVIAYFTAGLTAFYMFRVYLLTFDGYFRVHFQNYSSTKNGXF-YS 464
Query: 457 IGMAILGTLNVVFGVAPGIIAKELN 481
I + GT GV P ++ +N
Sbjct: 465 ISLWGKGTPR---GVNPNLLLSTMN 486
>pir||T13503 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Olyra
latifolia chloroplast (fragment)
>gi|755835|gb|AAA64776.1| (U21971) NADH dehydrogenase F
[Olyra latifolia]
Length = 704
Score = 140 bits (350), Expect = 4e-32
Identities = 117/414 (28%), Positives = 196/414 (47%), Gaps = 49/414 (11%)
Query: 64 KLGFMMSHLNWIFSMIAAVVGVSAILGM--VSTAKDGYEWLFALMSL--TGALGIFTAQD 119
+ G+++ L I ++ VGV ++ + +GY F +S T LG+ + +
Sbjct: 77 EFGYLIDPLTSIMLILITTVGVLVLIYSDDYMSHDEGYLRFFVYISFFNTSMLGLVISSN 136
Query: 120 LVVFFIFWEIMTFASFMMV-LKFNR----AASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
L+ + FWE++ S++++ F R +A K F+ + +G + +L+ I + TGS
Sbjct: 137 LIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFFWITGSL 196
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
F D+ + + + S L +LLFL A K+ FPLHVW PDA E
Sbjct: 197 EFRDLF-----KIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLHVWLPDAM-EG 249
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGG 294
+A+ + AG++ L+ L S P ++ +G +T+ +G
Sbjct: 250 PTPISALIHATMVAAGIFLLARLFPLFI-----------SLPLIMSFVSLVGTITLFLGA 298
Query: 295 ILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATL 354
LA Q DI+R AYS++SQ+GY+++ LGIG+ +AA++H I+HA K L FL ++
Sbjct: 299 TLALAQRDIKRSLAYSTMSQLGYMMLALGIGS---YQAALFHLITHAYSKALLFLGSGSV 355
Query: 355 IYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEA 405
I+ G + K GGL + +P T T LSL GIPPL F SK +
Sbjct: 356 IHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPLACFWSK----DE 411
Query: 406 VISQN---LPILGGMVFFGSAIGFVYLIR---FTYAVWFGQRPSDIEDTKDAPL 453
++S + P G + F + + Y+ R T+ + R + +TK+ L
Sbjct: 412 ILSNSWLYSPFFGIIASFTAGLTAFYMFRIYLLTFDGYLRVRFQNYSNTKEGSL 465
>gi|11467058 NADH dehydrogenase, subunit 2 [Acanthamoeba castellanii]
>gi|3122448|sp|Q37376|NU2M_ACACA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 2 >gi|1078741|pir||S53835 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2 -
Acanthamoeba castellanii mitochondrion
>gi|562039|gb|AAD11827.1| (U12386) NADH dehydrogenase,
subunit 2 [Acanthamoeba castellanii]
Length = 527
Score = 140 bits (349), Expect = 5e-32
Identities = 105/390 (26%), Positives = 179/390 (44%), Gaps = 21/390 (5%)
Query: 99 YEWLFAL-MSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVLK-----FNRAASLKYFLL 152
+E++ L +SL +L I + DL+ F E+ + +++V F+ + LKYF+L
Sbjct: 138 FEFILVLFISLFSSLLILNSNDLISLFFIIELQSLTFYILVASKQTSSFSTESGLKYFIL 197
Query: 153 SIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLL 212
+ +L I LIY TG S++D++ F + V+ + + FS + +LL +
Sbjct: 198 GCFSSGIILFGISLIYGFTGLLSYTDLTLFLSEVYVTNFILDSSFFSFSGFLIGFLLLTV 257
Query: 213 AFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYG-FILLYILMYGKLLIDLGQ 271
F K G P H+W PD Y + TA S + + ++ F L Y + + L G
Sbjct: 258 GFLFKLGSAPFHMWMPDVYEGSPLLITAYLSTLPKISLIFVIFKLYYYVFFEVFLFSQGL 317
Query: 272 VRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIE 331
F +I++G I A Q ++R+ YS I+ GY+L+GL G GI
Sbjct: 318 FTLTALF----------SILLGSIAAIYQVKLKRMLTYSMITNTGYLLLGLSFGDISGIY 367
Query: 332 AAIYHAISHA-LFKGLFFLIVATLIYRTG--KTEFKDFGGLAEKMPFTFTMAFIAILSLA 388
I++ IS+ + GLFF ++ +G F L E P FI + S+A
Sbjct: 368 ITIFYLISYIFIMIGLFFCFLSLRDRSSGLLVKRINLFSNLLEVNPSLSFSIFILLFSIA 427
Query: 389 GIPPLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDT 448
GIPPL+GF SK+ +F + + + + S + Y IR ++F + I
Sbjct: 428 GIPPLLGFYSKFFLFLFSLKYKMYWMTILFVIFSVVSVFYYIRLVKLMYFNRTTGWI-FL 486
Query: 449 KDAPLPLAIGMAILGTLNVVFGVAPGIIAK 478
D P ++ ++ + +N +F P ++ K
Sbjct: 487 YDIPFLNSLIISFITIINCLFFFNPNLLFK 516
>sp|P50367|NU5M_RHIST NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|7432483|pir||T14202 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Rhizopus stolonifer mitochondrion
>gi|604924|gb|AAA99062.1| (U17011) NADH dehydrogenase,
subunit 5 [Rhizopus stolonifer]
Length = 654
Score = 140 bits (349), Expect = 5e-32
Identities = 127/498 (25%), Positives = 233/498 (46%), Gaps = 60/498 (12%)
Query: 4 LLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGA----LIPLIGLIKLYPS--LGQGVSYT 57
+ LA++ PL++ +A K + G +I L L+ L+ Y G VS
Sbjct: 1 MYLAILTLPLLSATVAGFLGRKIGKTGSHLITCSSLVLTALLALVAFYEVGLCGSPVSIK 60
Query: 58 ITVGGFKLGFMMSHLNWIF-----SMIAAVVGVSAILGMVST---AKDGY-EWLFALMSL 108
+ + F++ +I+ SM+ V+ VSA++ + ST ++D + + FA +S+
Sbjct: 61 L-MSWIDSEFLLVSWGFIYDSLTVSMLLPVLIVSALVHIYSTNYMSEDPHNQRFFAYLSM 119
Query: 109 TG--ALGIFTAQDLVVFFIFWEIMTFASFMMV------LKFNRAASLKYFLLSIMGAYAM 160
L + T + +V FI WE + +S++++ L+ N+AA +K +++ +G +
Sbjct: 120 FTFFMLMLVTGDNYLVMFIGWEGVGISSYLLINFWFTRLQANKAA-IKALVMNRVGDWGF 178
Query: 161 LVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGM 220
+ + I+ G+ F+ T+ P ++ + +I + L+A K+
Sbjct: 179 SIGLWAIFWTFGNLDFT------------TVFSLAPFINEELITIISICLLVAAMGKSAQ 226
Query: 221 FPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGY 280
LH W PDA I + + AGVY +L+ +++ G
Sbjct: 227 IGLHTWLPDAMEGPTPVSALIHAATMVTAGVY------LLLRSSPILEFGSTALI----- 275
Query: 281 VIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISH 340
+I ++G LT LQ D++R+ AYS+ SQ+G + + G+ A++H ++H
Sbjct: 276 LITWVGALTAFFAATTGLLQNDLKRVIAYSTCSQLGLLFLVCGLSQ---YNVALFHLVNH 332
Query: 341 ALFKGLFFLIVATLIYRTG-KTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASK 399
A FK L FL ++I+ + + + FGGL+ +PFT++M I LSL +P L GF SK
Sbjct: 333 AWFKALLFLSAGSVIHAMNDEQDLRKFGGLSRLLPFTYSMMVIGSLSLMALPFLTGFYSK 392
Query: 400 WLIFEAVISQNLPILGGMVFFGSAIGFV----YLIRFTYAVWFGQRPS---DIEDTKDAP 452
LI E + G +V++ +++ V Y IR Y + G + + +AP
Sbjct: 393 DLIIELAYG-HYSFSGNLVYWLASVAAVFTAMYSIRSLYLTFLGYPNGPKINYNNIHEAP 451
Query: 453 LPLAIGMAILGTLNVVFG 470
L +AI + +L ++ FG
Sbjct: 452 LIMAIPLVVLAVFSIFFG 469
>pir||B82495 probable NADH dehydrogenase VCA0157 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657546|gb|AAF96070.1|
(AE004356) NADH dehydrogenase, putative [Vibrio
cholerae]
Length = 891
Score = 140 bits (349), Expect = 5e-32
Identities = 112/446 (25%), Positives = 203/446 (45%), Gaps = 52/446 (11%)
Query: 65 LGFMMSHLNWIFSM----IAAVVGVSAILGMVSTAKDGYEWLFALMSLTGALGIFTAQDL 120
L F + L+++F+ I A++ + A+ M A L+ + + LG+ + ++
Sbjct: 57 LSFRLDGLSFLFASLITGIGALIQIYALAYMKEKAARFSFHLYLTLFMLAMLGVVVSDNI 116
Query: 121 VVFFIFWEIMTFASFMMVLKFN------RAASLKYFLLSIMGAYAMLVAIGLIYAKTGSF 174
++ FIFWE+ T S++++ FN R +L+ L++ G A+L + L+ S+
Sbjct: 117 LLLFIFWELTTITSYLLI-GFNHDKPVSRKNALQSLLVTGAGGLALLAGLILLGLMANSY 175
Query: 175 SFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSET 234
S I + + P F +L LL K+ FP H W P+A +
Sbjct: 176 QISVIIEH------ADHIAQHPWFMPS-----LILVLLGAFTKSAQFPFHFWLPNAMAAP 224
Query: 235 DQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAFG-YVIAFLGGLTIIVG 293
+ S + KAG+Y LL L + ++ F Y + +G +T +
Sbjct: 225 TPVSAYLHSATMVKAGIY------------LLARLSPIYASSDFWFYCLTIVGAVTALWC 272
Query: 294 GILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVAT 353
+LA Q D++ + AYS+ +G + + LG+GT + + AA+ +H+ +K F++V
Sbjct: 273 ALLAFKQTDLKLMLAYSTNVALGKLTLLLGLGTEVALTAAVLFIFAHSFYKAALFMVVGN 332
Query: 354 LIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPI 413
+ TG E + G L + + A IA LS +G+ P++GF SK ++++ + +
Sbjct: 333 IDKATGTREREKLGNLKSVLLLSLIAAVIAALSKSGVAPMLGFLSKEYMYKSSVESGIAW 392
Query: 414 LGGMVFFGSAIGFVYLIRFTYAVWFGQR--------PSDIEDTKDAPLPLAIGMAILGTL 465
+ ++ +A+ I Y +FGQ P IE K LP A+G+AI L
Sbjct: 393 ISLVLLLINALMVALAIALLYKPFFGQATKESESHPPKAIEQKKSLWLP-AMGLAIASFL 451
Query: 466 NVVFG--------VAPGIIAKELNAI 483
VF V P ++A + N++
Sbjct: 452 LPVFALDWINQHLVIPAVMAMDPNSV 477
>pir||S38322 NADH dehydrogenase I chain nuoM - Escherichia coli (strain AN387)
Length = 458
Score = 139 bits (348), Expect = 7e-32
Identities = 101/393 (25%), Positives = 179/393 (44%), Gaps = 37/393 (9%)
Query: 108 LTGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRAAS---------LKYFLLSIMGAY 158
L G +G+F A D+ +FF FWE+M + ++ + AS K+F+ +
Sbjct: 73 LGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYTQASGL 132
Query: 159 AMLVAIGLI----YAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAF 214
ML+AI + Y TG ++F+ L TP S ++ L+ L F +AF
Sbjct: 133 VMLIAILALVFVHYNATGVWTFN-----------YEELLNTPMSSGVEY-LLMLGFFIAF 180
Query: 215 GVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRS 274
VK + PLH W PDA+S+ + + +G+L K YG + + ++ +
Sbjct: 181 AVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPN---------A 231
Query: 275 APAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAI 334
+ F + +LG + I G +A Q DI+RL AY+S+S +G++L+ + G+ L + A+
Sbjct: 232 SAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAV 291
Query: 335 YHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLV 394
I+H L F++ L R + + GGL KM + ++ ++ G+P
Sbjct: 292 IQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTG 351
Query: 395 GFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDI--EDTKDAP 452
F +++I Q +P++ + FG VY + + +FG+ S I ++
Sbjct: 352 NFVGEFMILFGSF-QVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMS 410
Query: 453 LPLAIGMAILGTLNVVFGVAPGIIAKELNAIFG 485
L + +L L V+ G P I ++ G
Sbjct: 411 LRDVFMILLLVVLLVLLGFYPQPILDTSHSAIG 443
>pir||F71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO13 -
Helicobacter pylori (strain J99)
>gi|4155783|gb|AAD06759.1| (AE001545) NADH
oxidoreductase I [Helicobacter pylori J99]
Length = 512
Score = 139 bits (348), Expect = 7e-32
Identities = 123/505 (24%), Positives = 224/505 (44%), Gaps = 62/505 (12%)
Query: 4 LLLAVIFSPLVAGFLAWLFNVKGIREGIGVIGALIPLIGLIKLYPSLGQ----------- 52
LL VIF P+++ LA+ + + R ++ ALI L+ ++ L+
Sbjct: 8 LLSVVIFFPMLSALLAFFMSDQASR-AYAIVIALIELLLVLLLWHGFDIQTAGMQFEEMK 66
Query: 53 ------GVSYTITVGGFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALM 106
GV+Y + V G L ++ + A+V + +++ + KD ++ L+
Sbjct: 67 ELAYQIGVNYHVGVDGIALFLLL---------LNAIVVLLSVIYVKERRKD---FVICLL 114
Query: 107 SLTGAL-GIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA----ASLKYFLLSIMGAYAML 161
L G L G+F++ +++ F+ FWEI ++ +F R + +K+FL + + + ML
Sbjct: 115 LLEGILMGVFSSLNVIFFYAFWEISLLPVLYLIGRFGRNNKIYSGMKFFLYTFLASLCML 174
Query: 162 VAI---GLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKA 218
+ I G YA DI ++ FS +++ FL+ VK
Sbjct: 175 LGILYIGYDYANNYGMMSFDILDWYQLN-----------FSSGIKTWLFVAFLIGIAVKI 223
Query: 219 GMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAF 278
+FPLH W P AYS + + S +LSK G Y +L ++L L +L ++ P
Sbjct: 224 PLFPLHTWLPYAYSNAPTLGSVMLSALLSKMGTYA-LLRFLL---PLFPELSEIYLTP-- 277
Query: 279 GYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAI 338
IA + II GG LA Q+D++ L AYSS S +G +++G+ G+ A++
Sbjct: 278 ---IAIVALCMIIYGGFLAYAQKDLKTLIAYSSFSHMGVVVLGVFSFNVEGVSGAVFMMF 334
Query: 339 SHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFAS 398
+H + FL+ L R E FG +A+ P I +++ G+P +GF
Sbjct: 335 AHGVIVMGLFLLAGILEERASSLEIARFGSIAKSAPVFAAFFMIVLMANVGMPLSIGFVG 394
Query: 399 KWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRP---SDIEDTKDAPLPL 455
++L + P+L + + VY++ V+FG + I +D
Sbjct: 395 EFLSLLGFFA-TYPLLAIIAGTSIILSAVYMLTSYKDVFFGNLKTGNNQISVFEDLNARE 453
Query: 456 AIGMAILGTLNVVFGVAPGIIAKEL 480
++++ L ++ G+ P + K +
Sbjct: 454 VGVLSVILALILILGIYPKALLKPI 478
>gb|AAF22389.1|AF047782_1 (AF047782) NADH dehydrogenase [Nemophila parviflora]
Length = 696
Score = 139 bits (348), Expect = 7e-32
Identities = 113/377 (29%), Positives = 180/377 (46%), Gaps = 52/377 (13%)
Query: 49 SLGQGVSYTITVGGFKL--GFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFA 104
S+ Q V I F L G+++ L I S++ VG+ ++ + GY FA
Sbjct: 59 SIYQSVWSWIINNNFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQGYLRFFA 118
Query: 105 LMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGA 157
MSL T LG+ T+ +L+ +IFWE++ S++++ F R A K + + +G
Sbjct: 119 YMSLFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANAXQKAXITNRVGX 178
Query: 158 YAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFG-- 215
+ +L+ I Y TGSF F D+ A F ++ ++++ L +L FG
Sbjct: 179 FGLLLGILGFYWITGSFEFRDLFAIFNNLILT---------NEVNFFFATLCAVLLFGGA 229
Query: 216 -VKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQ 271
K+ FPLHVW PDA I + + AG++ + L+I++
Sbjct: 230 VAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVI---------- 279
Query: 272 VRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIE 331
P IA +G +T+ +G LA Q+DI+ AYS++SQ+GY+++ LG+G
Sbjct: 280 ----PYIMNFIALIGIITLFLGASLAIAQKDIKXGLAYSTMSQLGYMMLALGMGX---YR 332
Query: 332 AAIYHAISHALFKGLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFI 382
A++H I+HA K L FL ++I+ G + K GGL + + T T +
Sbjct: 333 NALFHLITHAYSKALLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVSITKTAFLL 392
Query: 383 AILSLAGIPPLVGFASK 399
LSL GIPPL F SK
Sbjct: 393 GTLSLCGIPPLACFWSK 409
>pir||D70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoN2 -
Aquifex aeolicus >gi|2983796|gb|AAC07354.1| (AE000737)
NADH dehydrogenase I chain N [Aquifex aeolicus]
Length = 488
Score = 139 bits (347), Expect = 9e-32
Identities = 99/413 (23%), Positives = 189/413 (44%), Gaps = 37/413 (8%)
Query: 75 IFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTGALGIF---TAQDLVVFFIFWEIMT 131
IF+++ + + S K Y + +++ T LG+F + +L++ ++ E+++
Sbjct: 88 IFAVLITLAILPFASSYFSAKKSFYGEFYYILAFT-LLGVFVLASTYNLIILYVALELVS 146
Query: 132 FASFMMVLKFN-----RAASLKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKE 186
+++ + + KY +L + +Y +GS +I + GK+
Sbjct: 147 VGFYILTALLRGSTEAKEGAFKYLILGGLSIALASYGAAFMYIYSGSLDLREILTYQGKD 206
Query: 187 AVSTMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVL 246
+LG + FL+ VK G P H W PDAY TA+ + V
Sbjct: 207 IHYLVLG-------------LVFFLIGLAVKIGAVPFHYWVPDAYQGAPTPVTALMASV- 252
Query: 247 SKAGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRL 306
G F + + + + L Q + + + + + LT++ G ++A +Q+D++RL
Sbjct: 253 ---GKLAFFIPLVRV-----MPLVQEKFSLVWTITVGVIAALTMLYGNLVALVQKDVKRL 304
Query: 307 FAYSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYR-TGKTEFKD 365
AYSSI+ GYI+ G + +G++A IY +++A+ FL++A + + ++
Sbjct: 305 LAYSSIAHSGYIMAGAAVAKVIGMKAVIYFLVAYAVMSAGAFLVLALMEKNPEWQNYMEN 364
Query: 366 FGGLAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPILGGMVFFGSAIG 425
F GL P+ F+ +++L G+PP VGF K L+F A+ L L ++ +AI
Sbjct: 365 FYGLRFNAPYIAFAFFVYMVALLGVPPTVGFVGKALVFMALSFDKLWWLAFIMILSAAIS 424
Query: 426 FVYLIRFTYAVWFGQRPSDIEDTKDAPLPLA--IGMAILGTLNVVFGVAPGII 476
Y IR ++ +R +I + AP L + L +V+ GV P ++
Sbjct: 425 TGYYIRLVVVMYMHEREKEI---RSAPSHLGEKFSLFALTLASVLLGVLPSLV 474
>pir||F82822 NADH-ubiquinone oxidoreductase, NQO12 subunit XF0316 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105139|gb|AAF83127.1|AE003884_12 (AE003884)
NADH-ubiquinone oxidoreductase, NQO12 subunit [Xylella
fastidiosa]
Length = 713
Score = 139 bits (347), Expect = 9e-32
Identities = 118/441 (26%), Positives = 205/441 (45%), Gaps = 56/441 (12%)
Query: 4 LLLAVIFSPLVAGFLAWLFNVKGIREG---IGVIGALIPL-IGLIKLYPSLGQGVS---- 55
+L+AV+ +PL +A L + R+G + ++G + + Y +GQG +
Sbjct: 9 MLIAVVLAPLFGSIIAGLLGRQVGRKGAHCVTLLGVAVSCALSCWTFYQLVGQGAAPFNQ 68
Query: 56 --YTI-TVGGFK--LGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKD--GYEWLFALMSL 108
YT VG + +GFM+ L + ++ V + L + ++ GY+ F+ +SL
Sbjct: 69 NLYTFFQVGEYSAHVGFMIDRLTAVMMVVVTFVSLLVHLYTIGYMEEDPGYQRFFSYISL 128
Query: 109 T--GALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGAYAML 161
L + + + + F WE + S++++ F R A++K FL++ +G + L
Sbjct: 129 FTFSMLTLVMSNNFLQLFFGWEAVGLVSYLLIGFWFKRPSAIFANMKAFLVNRVGDFGFL 188
Query: 162 VAIGLIYAKTGSFSFSDISAFFGK---EAVSTMLGGTPAFSKL-----------DVALIY 207
+ I L+ G+ +S + A G + + G F + +
Sbjct: 189 LGISLVLYTFGTLDYSVVFANVGSLVGQTTNVWSGNVDVFGSIIHIMGPVSWSTATLVCI 248
Query: 208 LLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKL-- 265
LF+ A G K+ PLHVW PD+ I + + AG++ M ++
Sbjct: 249 CLFIGAMG-KSAQVPLHVWLPDSMEGPTPISALIHAATMVTAGIF--------MVARMSP 299
Query: 266 LIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIG 325
L L +V A +V+ F+G T G++ +Q DI+R+ AYS++SQ+GY+ V LG+
Sbjct: 300 LFQLSEV----ALQFVL-FVGATTAFFTGLIGIVQNDIKRVVAYSTLSQLGYMTVALGVS 354
Query: 326 TSLGIEAAIYHAISHALFKGLFFLIVATLIY-RTGKTEFKDFGGLAEKMPFTFTMAFIAI 384
AA++H ++HA FK L FL ++I + + + GGL + MP T+ + I
Sbjct: 355 ---AYSAAVFHLMTHAFFKALLFLAAGSVIIGMHHEQDMRKMGGLRKYMPITYITSVIGT 411
Query: 385 LSLAGIPPLVGFASKWLIFEA 405
L+L G P GF SK I EA
Sbjct: 412 LALVGTPFFSGFYSKDTIIEA 432
>emb|CAA76117.1| (Y16191) echA [Methanosarcina barkeri]
Length = 639
Score = 139 bits (346), Expect = 1e-31
Identities = 141/620 (22%), Positives = 253/620 (40%), Gaps = 94/620 (15%)
Query: 33 VIGALIPLIGLIKLYPSLGQGV--------SYTITVGGFKLGFMMSHLNWIFSMIAAVVG 84
VI ++ + K +P+LG G+ +Y G F + L + +I +VG
Sbjct: 75 VILYILAVSAKYKNWPTLGLGIISAALFAYTYANVPGAEGASFNIDPLAQLMILIVNIVG 134
Query: 85 VSAILGMVSTAKDGYE----------WLFALMSLTGAL-GIFTAQDLVVFFIFWEIMTFA 133
+ IL + D YE + F + A+ G+ + L ++FWE+ T
Sbjct: 135 TAIIL-FATGYMDQYEEHRHLNRQKIFYFTMSFFLAAMNGLVMSDTLGWLYLFWELTTLC 193
Query: 134 SFMMVLKFNRAAS-----LKYFLLSIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAV 188
SF+++ +N + L+++G AM + I L+ S + I+ + G +AV
Sbjct: 194 SFVLI-SYNMDEEGINNGFRALSLNLVGGVAMSIGIILLATNYNISSLTGIATYAGTDAV 252
Query: 189 STMLGGTPAFSKLDVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSK 248
+ +AL L + K+ P H W A + S +
Sbjct: 253 ALAA----------LALPVALLCIGGFAKSAQMPFHSWLLGAMVAPTPVSALLHSSTMVN 302
Query: 249 AGVYGFILLYILMYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFA 308
AGV+ L++ L + + G IA G T ++ LA Q + +R+ A
Sbjct: 303 AGVF------------LVVKLVPAYANTSLGTAIAVYGSFTFVICSALALSQRNAKRVLA 350
Query: 309 YSSISQVGYILVGLGIGTSLGIEAAIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGG 368
YS+I+ +G I+ GIGT L + A++ + HA+ KGL FL + + G + +D G
Sbjct: 351 YSTIANLGLIIASAGIGTPLAVAASMMLILFHAISKGLLFLCTGEIEHTIGSRDIEDMSG 410
Query: 369 LAEKMPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVY 428
L +K P ++A + ++S+ +PP +KW+ EA + N P++ + GSA+ VY
Sbjct: 411 LIKKAPLLTSIAALGMVSML-LPPFGVLLTKWVSMEA--ASNNPVVIIFIVLGSALTTVY 467
Query: 429 LIRFTYAVWFGQRPSDIEDTKDAP-------LPLAI-GMAILGTLNVVFGVAPGIIAKEL 480
Y+ W G S D P PL++ G++I+GT +F + I ++
Sbjct: 468 -----YSKWLGTILSTSMDKNAVPHKKLETYFPLSVLGLSIIGTSIFIFSIYDYFIRPQV 522
Query: 481 NAIF--GRTVIG-GNIWELELGFGRYNALLVTIWLVIGLLIAGILYFLGASTRKVPVTDT 537
+ V G + E+G Y A + +L IL +L P T
Sbjct: 523 EILLKVAPAVTGQAGQFTSEIGAFAYAA-------IFAVLALAILIYLATKNMFTPRTAG 575
Query: 538 YQSGNPVTMDYNLTIRRNFFLPLKEAVAFWLRISFDKLYRDVWKSIEDFAETARNYIYNG 597
Y ++ + + RN + + + S +Y +N
Sbjct: 576 YYMCGENNLEKDRLMFRN-------GLCSYEKCSVSNIY-------------LQNIFGES 615
Query: 598 NVQAYAWYLAIILLILAAMG 617
+ + + ++IIL+++A G
Sbjct: 616 KLTTFGYAISIILIVIALAG 635
>emb|CAB59326.1| (AJ236307) NADH dehydrogenase subunit F [Psychotria kirkii]
Length = 735
Score = 139 bits (346), Expect = 1e-31
Identities = 111/374 (29%), Positives = 179/374 (47%), Gaps = 46/374 (12%)
Query: 49 SLGQGVSYTITVGGFKL--GFMMSHLNWIFSMIAAVVGVSAIL--GMVSTAKDGYEWLFA 104
S+ Q V I + F L G+++ L I ++ VG+ ++ Y FA
Sbjct: 67 SIYQYVWSWIIINDFSLEFGYLIDSLTSIMLVLITTVGIMVLIYSDNYMAHDQAYLRFFA 126
Query: 105 LMSL--TGALGIFTAQDLVVFFIFWEIMTFASFMMV-LKFNRA----ASLKYFLLSIMGA 157
MS LG+ T+ +L+ +IFWE++ S++++ F R A K F+ + +G
Sbjct: 127 YMSFFSVSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRIGD 186
Query: 158 YAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVK 217
+ +L+ I + TGSF F D+ F + +L F L V L +L K
Sbjct: 187 FGLLLGILGFFWITGSFEFRDLFEIFN----NLLLNNEVNF--LFVTLCAVLLFAGAIAK 240
Query: 218 AGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVY---GFILLYILMYGKLLIDLGQVRS 274
+ FPLHVW PDA I + + AG++ + L+I++
Sbjct: 241 SAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVI------------- 287
Query: 275 APAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAI 334
P I+ +G +T++VG LA Q+DI+R AYS++SQ+GY+++ LG+G+ +A+
Sbjct: 288 -PYIMNFISLVGIITVLVGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRSAL 343
Query: 335 YHAISHALFKGLFFLIVATLIYR----TGKTEFKD-----FGGLAEKMPFTFTMAFIAIL 385
+H I+HA K L FL ++I+ G + K GGL + +P T + I L
Sbjct: 344 FHLITHAYSKALLFLGSGSIIHSMETVVGYSPHKSQNMALMGGLTKHVPITKSTFLIGTL 403
Query: 386 SLAGIPPLVGFASK 399
S+ GIPPL F SK
Sbjct: 404 SICGIPPLACFWSK 417
>pir||A75390 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 DR1494
[similarity] - Deinococcus radiodurans (strain R1)
>gi|6459251|gb|AAF11057.1|AE001993_7 (AE001993) NADH
dehydrogenase I, L subunit [Deinococcus radiodurans]
Length = 645
Score = 139 bits (346), Expect = 1e-31
Identities = 122/461 (26%), Positives = 216/461 (46%), Gaps = 61/461 (13%)
Query: 62 GFKLGFMMSHLNWIFSMIAAVVGVSAILGMVSTAKDGYEWLFALMSLTGALGIFTAQDLV 121
GF L + S + I + I ++ V ++ M AK + F ++ L + A
Sbjct: 78 GFYLDRLSSLMTLIITGIGFLIHVYSVSYMAHDAKFTRFFAFLNFFVSMMLILVLADSYP 137
Query: 122 VFFIFWEIMTFASFMMVL-----------------------KFNRAASLKYFLLSIMGAY 158
+ F+ WE + ASF+++ + N A+ K F+++ +G
Sbjct: 138 LMFVGWEGVGVASFLLIGFWHSGRNSEASDKDVRDASTSEGRANSNAARKAFIMNRIGDL 197
Query: 159 AMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLLAFGVKA 218
++ + L+Y G+ S +++ +A T + A S +++A ++LL + A G K+
Sbjct: 198 GFMLGMFLLYKLYGTLSIPELAG----QAAGTRV----AQSAIELACLFLL-VGAVG-KS 247
Query: 219 GMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQVRSAPAF 278
G PL W PDA + I + + AGVY ++ L +L AP
Sbjct: 248 GQLPLTTWLPDAMAGPTPVSALIHAATMVTAGVY------LVTRSHFLYEL-----APVA 296
Query: 279 GYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEAAIYHAI 338
+A++GGLT + G + A Q DI+++ AYS++SQ+GY+ + +G+G A ++H +
Sbjct: 297 SNWVAWVGGLTALYGALSALNQHDIKKILAYSTVSQLGYMFMAVGLG---AYSAGVFHLL 353
Query: 339 SHALFKGLFFLIVATLIYRT-GKTEFKDFGGLAEKMPFTFTMAFIAILSLAGIPPLVGFA 397
+HA FK L FL +I+ + + + GG+ MPFT A + +L+++GIP GF
Sbjct: 354 THAFFKALLFLCAGAVIHALHEEQDVRAMGGMRRFMPFTHVAALMGVLAISGIPIWSGFF 413
Query: 398 SKWLIFEAVISQN--LPILGGMVFFGSAIGFVYLIRFTYAVWFGQ------RPSDIEDTK 449
SK I A +Q+ L ++G V +A Y+ R+ + VW G+ P + +
Sbjct: 414 SKDAILAAAWAQSPWLYVIGLGVALLTAF---YMGRWYFLVWRGEYRGQVAHPHEADGLM 470
Query: 450 DAPLPLAIGMAIL-GTLNV-VFGVAPGIIAKELNAIFGRTV 488
PL + +A L G LN+ F + G+ + GR +
Sbjct: 471 RFPLGVLAALATLGGFLNIPAFLPSLGLPKHAFDTYLGRAI 511
>pir||F81220 NADH dehydrogenase I, N chain NMB0259 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225482|gb|AAF40713.1| (AE002382) NADH dehydrogenase
I, N subunit [Neisseria meningitidis MC58]
Length = 480
Score = 138 bits (345), Expect = 1e-31
Identities = 103/386 (26%), Positives = 184/386 (46%), Gaps = 36/386 (9%)
Query: 98 GYEWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVLK-----FNRAASLKYFLL 152
G + +L +L G + +A + +I E+++ A + ++ F A+LKYF+L
Sbjct: 106 GEFYTLSLFALLGMSVMVSAGHFLTAYIGLELLSLALYALIALRRDSGFAAEAALKYFVL 165
Query: 153 SIMGAYAMLVAIGLIYAKTGSFSFSDISAFFGKEAVSTMLGGTPAFSKLDVALIYLLFLL 212
+ + +L I ++Y TGS F+ + A E + L L + L++++ +
Sbjct: 166 GALASGLLLYGISMVYGATGSLEFAGVLASSFNEEANEWL--------LKLGLVFIVVAV 217
Query: 213 AFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSKAGVYGFILLYILMYGKLLIDLGQV 272
AF K G P H+W PD Y S TA+ G I + + L+ LG V
Sbjct: 218 AF--KLGAVPFHMWVPDVYHGAPTSVTAL-------VGTAPKIAAVVFTFRILVTGLGTV 268
Query: 273 RSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILVGLGIGTSLGIEA 332
+ + A L +++VG + A +Q +I+R+FAYS++S +G+IL+ G ++G A
Sbjct: 269 HHD--WSLMFALLAAASLLVGNLAAIMQTNIKRMFAYSTVSHMGFILLAFMAG-AVGFAA 325
Query: 333 AIYHAISHALFKGLFFLIVATLIYRTGKTE-FKDFGGLAEKMPFTFTMAFIAILSLAGIP 391
+Y+AI++AL F ++ L + E D GL + + + + + S+AGIP
Sbjct: 326 GLYYAITYALMAAAGFGVLMVLSDGDNECENISDLAGLNQHRVWLAFLMLLVMFSMAGIP 385
Query: 392 PLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDA 451
PL+GF +K+ + A++ Q L S IG Y +R ++F D+ D D
Sbjct: 386 PLMGFYAKFGVIMALLKQGHVWLSVFAVIMSLIGAFYYLRVVKVIYF-----DVPD-HDQ 439
Query: 452 PLPLAIGMAILGTLN----VVFGVAP 473
P+ + T+N +++G+ P
Sbjct: 440 PVGSNYAAKFVLTVNAFLLLLWGIMP 465
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.329 0.146 0.439
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218728069
Number of Sequences: 2977
Number of extensions: 9405062
Number of successful extensions: 49240
Number of sequences better than 1.0e-10: 3259
Number of HSP's better than 0.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 3187
Number of HSP's that attempted gapping in prelim test: 37970
Number of HSP's gapped (non-prelim): 3999
length of query: 618
length of database: 189,106,746
effective HSP length: 53
effective length of query: 565
effective length of database: 157,386,935
effective search space: 88923618275
effective search space used: 88923618275
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 168 (69.9 bits)