BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0492 (nuoH) DE:NADH dehydrogenase I, subunit H
         (309 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75113 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1...   603  e-172
pir||E71019 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1...   566  e-160
pir||C72281 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1...   215  7e-55
pir||T51315 probable CO-induced hydrogenase complex chain CooK [...   136  4e-31
gb|AAF65735.1|AF228525_5 (AF228525) F420H2 dehydrogenase subunit...   124  1e-27
pir||A75115 probable NADH dehydrogenase (ubiquinone) (EC 1.6.5.3...   118  6e-26
pir||B71018 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1...   117  1e-25
gi|11466757 ndh1 [Marchantia polymorpha] >gi|128619|sp|P06255|NU...   108  1e-22
emb|CAB44668.1| (AJ242867) NDH-A protein [Anabaena PCC7120]           106  3e-22
sp|P26522|NU1C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 >...   106  4e-22
pir||E70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain...   105  6e-22
gi|11466443 subunit 1 of NADH-plastoquinoneoxidoreductase [Mesos...   105  6e-22
emb|CAA76118.1| (Y16191) echB [Methanosarcina barkeri]                104  2e-21
gi|11499419 F420H2:quinone oxidoreductase, 41.2 kDa subunit, put...   103  2e-21
emb|CAA09812.1| (AJ011848) NADH dehydrogenase ND1 [Hordeum vulgare]   101  9e-21
gi|11467260 NADH dehydrogenase ND1 [Zea mays] >gi|400636|sp|P257...   100  3e-20
gi|11466852 NADH dehydrogenase ND1 [Oryza sativa] >gi|128620|sp|...   100  3e-20
sp|Q00242|NU1C_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 H...    99  5e-20
gi|11467870 subunit 1 of NADH-plastoquinoneoxidoreductase [Nephr...    97  2e-19
pir||H64364 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) - Metha...    97  3e-19
pir||F75060 probable hydrogenase (EC 1.18.99.1) chain 4 PAB1393 ...    96  4e-19
pir||E81991 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain...    96  4e-19
gi|11497586 NADH dehydrogenase ND1 subunit [Spinacia oleracea] >...    96  4e-19
gi|11466175 NADH dehydrogenase subunit 1 [Naegleria gruberi] >gi...    95  9e-19
pir||S37065 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain H...    95  1e-18
gb|AAG23680.1|AF288091_25 (AF288091) NADH dehydrogenase subunit ...    95  1e-18
emb|CAB67225.1| (AJ271079) NADH-plastoquinone oxidoreductase sub...    95  1e-18
gb|AAF03197.1|AF110138_29 (AF110138) NADH dehydrogenase subunit ...    94  2e-18
pir||E81219 NADH dehydrogenase I, H chain NMB0250 [imported] - N...    94  2e-18
sp|P33603|NUOH_ECOLI NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO...    94  2e-18
pir||H83314 NADH dehydrogenase I chain H PA2643 [imported] - Pse...    94  3e-18
pir||B65024 probable hydrogenase (EC 1.18.99.1) chain 4 b2483 [s...    92  6e-18
sp|P77858|HYFC_ECOLI HYDROGENASE-4 COMPONENT C >gi|1616952|gb|AA...    92  6e-18
gi|11466020 NADH dehydrogenase ND1 subunit [Nicotiana tabacum] >...    92  8e-18
sp|Q37165|NU1C_ARATH NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, ...    92  1e-17
sp|P16430|HYCD_ECOLI FORMATE HYDROGENLYASE SUBUNIT 4 (FHL SUBUNI...    91  2e-17
gi|7525090 NADH dehydrogenase ND1 [Arabidopsis thaliana] >gi|588...    91  2e-17
pir||B82822 NADH-ubiquinone oxidoreductase, NQO8 subunit XF0312 ...    90  2e-17
emb|CAC12095.1| (AL445066) NADH dehydrogenase, subunit I related...    90  3e-17
gi|9653247 NADH dehydrogenase subunit 1 [Chondrus crispus] >gi|1...    90  4e-17
pir||D75387 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1...    90  4e-17
gb|AAG19140.1| (AE005012) NADH dehydrogenase/oxidoreductase; Ndh...    90  4e-17
gi|11497479 NADH dehydrogenase (ubiquinone), subunit 1 [Protothe...    89  9e-17
pir||A71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N...    88  1e-16
sp|P06254|NU1C_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, ...    88  2e-16
pir||C64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N...    88  2e-16
gi|11465632 NADH dehydrogenase subunit 1 [Porphyra purpurea] >gi...    88  2e-16
sp|P48899|NU1M_CYACA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    87  3e-16
gi|8954370 NADH dehydrogenase subunit 1 [Cyanidioschyzon merolae...    87  3e-16
gi|9695396 NADH dehydrogenase subunit 1 [Phytophthora infestans]...    87  3e-16
emb|CAA69811.2| (Y08502) NADH dehydrogenase subunit 1 [Arabidops...    87  3e-16
sp|P57258|NUOH_BUCAI NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO...    87  3e-16
pir||B40358 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1...    86  5e-16
sp|Q60010|NUOH_SALTY NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO...    86  5e-16
sp|Q9ZCF7|NUOH_RICPR NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO...    86  6e-16
emb|CAC14152.1| (AJ245399) putative NADH-ubiquinone oxidoreducta...    86  6e-16
pir||S49576 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1...    85  8e-16
pir||E70419 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain...    85  1e-15
gb|AAF66631.1| (AF143001) NADH dehydrogenase subunit 1 [Rhinolop...    85  1e-15
gi|11467140 nad1 [Marchantia polymorpha] >gi|462756|sp|P26845|NU...    85  1e-15
sp|P31839|NU1M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    84  2e-15
gb|AAC69445.1| (AF009349) NADH dehydrogenase subunit 1 [Cucumari...    84  2e-15
gi|7524983 NADH dehydrogenase subunit 1 [Dictyostelium discoideu...    84  2e-15
sp|Q01148|NU1M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    84  2e-15
pir||A69151 NADH dehydrogenase (ubiquinone), subunit 1 related p...    83  3e-15
gi|5834982 NADH dehydrogenase subunit 1 [Xenopus laevis] >gi|128...    83  4e-15
pir||S34389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1...    83  4e-15
gi|5835067 NADH dehydrogenase subunit 1 [Petromyzon marinus] >gi...    83  4e-15
gi|11466642 NADH dehydrogenase subunit 1 [Malawimonas jakobiform...    83  4e-15
gi|11466583 NADH dehydrogenase subunit 1 [Rhodomonas salina] >gi...    83  4e-15
gi|11466477 NADH dehydrogenase subunit 1 [Chrysodidymus synuroid...    83  5e-15
emb|CAB52765.1| (AJ243655) transmembrane protein 31.3 kDa (conse...    82  9e-15
gi|11466331 NADH dehydrogenase subunit 1 [Cafeteria roenbergensi...    82  9e-15
gi|6137789 NADH dehydrogensae subunit 1 [Metridium senile] >gi|3...    82  1e-14
emb|CAA75485.1| (Y15186) NADH dehydrogenase subunit 1 [Myxine gl...    82  1e-14
gi|5835555 NADH dehydrogenase subunit 1 [Ovis aries] >gi|6093557...    82  1e-14
gb|AAF97804.1|AF281148_8 (AF281148) NADH dehydrogenase I subunit...    82  1e-14
gi|5834858 NADH dehydrogenase subunit 1 [Phoca vitulina] >gi|128...    81  2e-14
gi|5834898 NADH dehydrogenase subunit 1 [Strongylocentrotus purp...    81  2e-14
gi|5835010 NADH dehydrogenase subunit 1 [Halichoerus grypus] >gi...    80  3e-14
gi|5835835 NADH dehydrogenase subunit 1 [Pongo pygmaeus abelii] ...    80  3e-14
gi|5835693 NADH dehydrogenase subunit 1 [Ixodes hexagonus] >gi|7...    80  3e-14
sp|P42032|NUOH_RHOCA NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO...    80  3e-14
gi|5835086 NADH dehydrogenase subunit 1 [Asterina pectinifera] >...    80  3e-14
sp|P23650|NU1M_ASTPE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    80  3e-14
sp|O21077|NU1M_MYXGL NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    80  3e-14
pir||T34617 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1...    80  3e-14
gb|AAF66632.1| (AF143002) NADH dehydrogenase subunit 1 [Hipposid...    80  3e-14
gi|5835108 NADH dehydrogenase subunit 1 [Equus caballus] >gi|135...    80  4e-14
gi|5835346 NADH dehydrogenase subunit 1 [Equus asinus] >gi|31224...    80  4e-14
gi|11466505 NADH dehydrogenase, subunit 1 [Reclinomonas american...    80  4e-14
gi|6691423 NADH dehydrogenase subunit 1 [Lampetra fluviatilis] >...    80  4e-14
gi|5835639 NADH dehydrogenase subunit 1 [Papio hamadryas] >gi|66...    80  4e-14
gi|5835332 NADH dehydrogenase subunit 1 [Rhinoceros unicornis] >...    79  6e-14
gi|5834940 NADH dehydrogenase subunit 1 [Bos taurus] >gi|128632|...    79  8e-14
gi|5835318 NADH dehydrogenase subunit 1 [Polypterus ornatipinnis...    79  8e-14
gi|9801571 NADH dehydrogenase subunit 1 [Lama pacos] >gi|9558344...    79  8e-14
gi|5835477 NADH dehydrogenase subunit 1 [Balanoglossus carnosus]...    78  1e-13
gi|5836073 NADH dehydrogenase subunit 1 [Raja radiata] >gi|74319...    78  1e-13
gi|5835889 NADH dehydrogenase subunit 1 [Ceratitis capitata] >gi...    78  1e-13
gi|11386119 NADH dehydrogenase subunit 1 [Pteropus dasymallus] >...    78  1e-13
gi|5835402 NADH dehydrogenase subunit 1 [Ceratotherium simum] >g...    78  1e-13
pir||D72620 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1...    78  2e-13
gb|AAF61231.1|AF234899_1 (AF234899) NADH dehydrogenase I [Haemul...    78  2e-13
gi|5835304 NADH dehydrogenase subunit 1 [Arbacia lixula] >gi|743...    77  2e-13
sp|O78694|NU1M_SAGOE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    77  2e-13
gi|5835155 NADH dehydrogenase subunit 1 [Gorilla gorilla] >gi|60...    77  2e-13
gb|AAG28190.1|AF304201_1 (AF304201) NADH1 [Sus scrofa]                 77  2e-13
sp|P92718|NU1M_PONPP NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    77  3e-13
gi|5835360 NADH dehydrogenase subunit 1 [Macropus robustus] >gi|...    77  3e-13
sp|O78710|NU1M_PERGU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    77  3e-13
gi|5836031 NADH dehydrogenase subunit 1 [Hippopotamus amphibius]...    76  4e-13
gi|11465884 NADH dehydrogenase subunit 1 [Ochromonas danica] >gi...    76  4e-13
sp|O78705|NU1M_MACRU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    76  5e-13
gi|5835127 NADH dehydrogenase subunit 1 [Pan troglodytes] >gi|60...    76  5e-13
gb|AAF66626.1| (AF142996) NADH dehydrogenase subunit 1 [Pteronot...    76  5e-13
gi|5834968 NADH dehydrogenase subunit 1 [Paracentrotus lividus] ...    76  7e-13
pir||S34388 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1...    76  7e-13
sp|O78708|NU1M_VOMUR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    76  7e-13
gi|10803739 NADH dehydrogenase subunit 1 [Gonostoma gracile] >gi...    76  7e-13
gb|AAF66628.1| (AF142998) NADH dehydrogenase subunit 1 [Pteronot...    76  7e-13
emb|CAA66299.1| (X97713) NADH1 [Pongo pygmaeus pygmaeus]               75  9e-13
sp|O78701|NU1M_BRAVA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    75  1e-12
gi|5835653 NADH dehydrogenase subunit 1 [Canis familiaris] >gi|7...    75  1e-12
gi|5835206 NADH dehydrogenase subunit 1 [Felis catus] >gi|135253...    75  2e-12
gi|11465930 NADH dehydrogenase subunit 1 [Pedinomonas minor] >gi...    75  2e-12
gb|AAF61229.1|AF234897_1 (AF234897) NADH dehydrogenase I [Haemul...    75  2e-12
gi|5835251 NADH dehydrogenase subunit 1 [Locusta migratoria] >gi...    74  2e-12
sp|P92604|NU1M_CANFA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    74  2e-12
pir||T14245 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1...    74  2e-12
gi|11602892 NADH dehydrogenase subunit 1 [Pteropus scapulatus] >...    74  2e-12
pir||C69032 NADH dehydrogenase (ubiquinone), subunit 1 related p...    74  3e-12
gi|5835459 NADH dehydrogenase subunit 1 [Florometra serratissima...    74  3e-12
gi|5835667 NADH dehydrogenase subunit 1 [Artibeus jamaicensis] >...    74  3e-12
gb|AAF66625.1| (AF142995) NADH dehydrogenase subunit 1 [Artibeus...    74  3e-12
emb|CAA10597.1| (AJ132137) NADH dehydrogenase subunit 1 [Littori...    73  3e-12
gb|AAF61228.1|AF234896_1 (AF234896) NADH dehydrogenase I [Haemul...    73  3e-12
gb|AAF66629.1| (AF142999) NADH dehydrogenase subunit 1 [Pteronot...    73  3e-12
gi|5835220 NADH dehydrogenase subunit 1 [Protopterus dolloi] >gi...    73  4e-12
sp|O78704|NU1M_MACEU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    73  6e-12
sp|O78712|NU1M_SMIMA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    73  6e-12
gb|AAF66624.1| (AF142994) NADH dehydrogenase subunit 1 [Noctilio...    73  6e-12
gb|AAF66630.1| (AF143000) NADH dehydrogenase subunit 1 [Mormoops...    73  6e-12
gi|5835140 NADH dehydrogenase subunit 1 [Pan paniscus] >gi|60451...    72  8e-12
gb|AAF61225.1|AF234893_1 (AF234893) NADH dehydrogenase I [Haemul...    72  8e-12
gi|9653260 NADH dehydrogenase subunit 1 [Physeter catodon] >gi|9...    72  8e-12
gb|AAC28344.1| (AF065103) NADH dehydrogenase subunit 1 [Nyctalus...    72  1e-11
sp|O80003|NUM1_NYCNO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    72  1e-11
sp|O78707|NU1M_TRIVU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    72  1e-11
gi|7374120 NADH dehydrogenase subunit 1 [Penaeus monodon] >gi|72...    72  1e-11
gb|AAF66627.1| (AF142997) NADH dehydrogenase subunit 1 [Pteronot...    72  1e-11
emb|CAC08255.1| (AL392146) NADH dehydrogenase subunit [Streptomy...    72  1e-11
gb|AAK40660.1| NADH dehydrogenase subunit H  (NuoH) [Sulfolobus ...    71  1e-11
emb|CAA70708.1| (Y09524) NADH dehydrogenase subunit 1 [Branchios...    71  1e-11
gi|5835807 NADH dehydrogenase subunit 1 [Gadus morhua] >gi|24992...    71  1e-11
emb|CAA27295.1| (X03660) NADH hydrogenase subunit I (aa 1-359) [...    71  1e-11
gi|5835514 NADH dehydrogenase subunit 1 [Branchiostoma lanceolat...    71  1e-11
sp|O78702|NU1M_MANTE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|...    71  1e-11
gb|AAF78602.1|AF260826_1 (AF260826) NADH subunit 1 [Cochliomyia ...    71  1e-11
emb|CAA23994.1| (V00650) URF 1 [Emericella nidulans]                   71  2e-11
gi|5835374 NADH dehydrogenase subunit 1 [Latimeria chalumnae] >g...    71  2e-11
gi|5835541 NADH dehydrogenase subunit 1 [Alligator mississippien...    71  2e-11
gb|AAF61226.1|AF234894_1 (AF234894) NADH dehydrogenase I [Haemul...    71  2e-11
gb|AAF81391.1|AF164590_2 (AF164590) NADH dehydrogenase subunit 1...    71  2e-11
gi|5835597 NADH dehydrogenase subunit 1 [Scyliorhinus canicula] ...    70  3e-11
gi|5835861 NADH dehydrogenase subunit 1 [Daphnia pulex] >gi|7431...    70  3e-11
gi|8844984 NADH dehydrogenase subunit 1 [Typhlonectes natans] >g...    70  3e-11
gi|5835709 NADH dehydrogenase subunit 1 [Squalus acanthias] >gi|...    70  4e-11
pir||B81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1...    70  4e-11
gi|5835975 NADH dehydrogenase subunit 1 [Vidua chalybeata] >gi|7...    69  5e-11
gi|5836045 NADH dehydrogenase subunit 1 [Mustelus manazo] >gi|74...    69  7e-11
gi|5835765 NADH dehydrogenase subunit 1 [Orycteropus afer] >gi|7...    69  7e-11
gb|AAA65487.1| (M57527) NDI [Rana catesbeiana]                         69  9e-11
sp|P16672|NU1M_RANCA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1            69  9e-11
gb|AAF81367.1|AF164578_2 (AF164578) NADH dehydrogenase subunit 1...    69  9e-11
gb|AAF81369.1|AF164579_2 (AF164579) NADH dehydrogenase subunit 1...    69  9e-11

>pir||H75113 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PAB0492
           [similarity] - Pyrococcus abyssi (strain Orsay)
           >gi|5458136|emb|CAB49625.1| (AJ248285) NADH
           dehydrogenase I, subunit H [Pyrococcus abyssi]
           Length = 309
           
 Score =  603 bits (1538), Expect = e-172
 Identities = 309/309 (100%), Positives = 309/309 (100%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTH 60
           MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTH
Sbjct: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTH 60

Query: 61  GVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNP 120
           GVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNP
Sbjct: 61  GVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNP 120

Query: 121 YAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAI 180
           YAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAI
Sbjct: 121 YAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAI 180

Query: 181 AYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFL 240
           AYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFL
Sbjct: 181 AYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFL 240

Query: 241 GGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPTIIA 300
           GGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPTIIA
Sbjct: 241 GGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPTIIA 300

Query: 301 ALGAILASL 309
           ALGAILASL
Sbjct: 301 ALGAILASL 309


>pir||E71019 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PH1450
           [similarity] - Pyrococcus horikoshii
           >gi|3257874|dbj|BAA30557.1| (AP000006) 309aa long
           hypothetical NADH-ubiquinone oxidoreductase subunit
           [Pyrococcus horikoshii]
           Length = 309
           
 Score =  566 bits (1443), Expect = e-160
 Identities = 279/309 (90%), Positives = 298/309 (96%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTH 60
           MLRV+++A+LIL+YATFVGFMFMGIIRK  AR+HRRIGPPIYQPIIDTIKLF KKEN+TH
Sbjct: 1   MLRVVIDALLILIYATFVGFMFMGIIRKTVARIHRRIGPPIYQPIIDTIKLFAKKENITH 60

Query: 61  GVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNP 120
           GVI+DFG+VFALGATILALMFIPLG++SVLRAYGDLILITFLLEIPMLGIMFAAMSSGNP
Sbjct: 61  GVIYDFGVVFALGATILALMFIPLGNVSVLRAYGDLILITFLLEIPMLGIMFAAMSSGNP 120

Query: 121 YAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAI 180
           YAGIGAQRALLTLLA+QVPLGFAIV L EYYGTFSTYEIVMAQQ+HGWSIFHLPLLLAAI
Sbjct: 121 YAGIGAQRALLTLLAVQVPLGFAIVTLGEYYGTFSTYEIVMAQQLHGWSIFHLPLLLAAI 180

Query: 181 AYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFL 240
           AYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGK+LGILQVQHAIGLFAETLFFSNIFL
Sbjct: 181 AYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKHLGILQVQHAIGLFAETLFFSNIFL 240

Query: 241 GGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPTIIA 300
           GGA +T FSS ILNTLAT+ +LLIKQL VLF+AI ISTIFPRFTIDQAA+FYWKWPTIIA
Sbjct: 241 GGAAVTAFSSSILNTLATITILLIKQLVVLFIAIFISTIFPRFTIDQAAEFYWKWPTIIA 300

Query: 301 ALGAILASL 309
           ALGAILASL
Sbjct: 301 ALGAILASL 309


>pir||C72281 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 TM1213
           [similarity] - Thermotoga maritima (strain MSB8)
           >gi|4981766|gb|AAD36288.1|AE001778_9 (AE001778) NADH
           dehydrogenase, putative [Thermotoga maritima]
           Length = 293
           
 Score =  215 bits (541), Expect = 7e-55
 Identities = 123/307 (40%), Positives = 173/307 (56%), Gaps = 20/307 (6%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTHGVIF 64
           ++ A+  L+ A F+     GI RK+ ARV RRIGPP YQ  ID  K   K    ++G +F
Sbjct: 1   MIKALFNLVLAFFLVLSLEGIARKIVARVQRRIGPPWYQNFIDVFKALSKHP-FSNGWVF 59

Query: 65  DFGIVFALGATILALMFIPLGSI--SVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYA 122
           DFG++ ALG ++   M +PLGS+  +      +  +IT+L  +  LG+    + SGNP+A
Sbjct: 60  DFGVLMALGGSVATAMLMPLGSLKWTPFPNTDNFFVITYLFTVGALGMAMGMVGSGNPWA 119

Query: 123 GIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAIAY 182
            IG  RAL  +L  ++P    + ++   Y T S ++++  Q    W++F +PL   AI  
Sbjct: 120 SIGISRALTQMLGYELPFLVVMASVIFNYKTASIHQLITFQG-EKWNLFSMPL--GAIVA 176

Query: 183 DIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGG 242
            I L  M GK+PFDI IAP EI+ GPMVE  GKYLG+LQ+ H   LF E   F N+FLGG
Sbjct: 177 FISLIGMMGKKPFDIAIAPAEIASGPMVELSGKYLGLLQIMHDFSLFVEISLFVNVFLGG 236

Query: 243 AVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPTIIAAL 302
                          +LG  L+K + V  VA+LIS++ PRF I+Q  KFYW  P  +A L
Sbjct: 237 --------------GSLGWFLVKFVTVWVVAVLISSVLPRFRIEQMLKFYWGVPLGLAFL 282

Query: 303 GAILASL 309
            A+   L
Sbjct: 283 NALFVVL 289


>pir||T51315 probable CO-induced hydrogenase complex chain CooK [imported] -
           Rhodospirillum rubrum >gi|1515467|gb|AAC45117.1|
           (U65510) CooK [Rhodospirillum rubrum]
           Length = 323
           
 Score =  136 bits (338), Expect = 4e-31
 Identities = 94/309 (30%), Positives = 149/309 (47%), Gaps = 21/309 (6%)

Query: 13  LYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTHG---VIFDFGIV 69
           ++A  +G    G  R+V AR+ RR+G P+ QP  D +KL  K+  V      V+F    +
Sbjct: 22  IFAITLGLALKGFDRRVFARLQRRVGAPLLQPFYDVLKLMTKRTLVPENANLVVFLMVPL 81

Query: 70  FALGATILALMFIPL-GSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQR 128
             L +  +A   IP+ G      A+GDL+++ +LL +P + +M A  +SG+P+ GIG  R
Sbjct: 82  LGLASMGVAAAMIPIPGLYDPSPAFGDLLVLFYLLSVPAVMLMLAGSASGSPFGGIGFSR 141

Query: 129 ALLTLLAIQVPLGFAIVALAEYYGT-------FSTYEIVMAQQVHGWSIFHLPLLLAAIA 181
            +  +LA + P+   IV++A   G         S  EIV  QQ HG  +F   +  A + 
Sbjct: 142 EMAIMLAYEGPILLVIVSVALKTGAALGQPICLSLSEIVRYQQAHGAYLFDPWMWPAVLT 201

Query: 182 YDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLG 241
           Y   + A  G  PFDI  A  E+  GP++E+ G  LG+L++  A+          ++ + 
Sbjct: 202 YIAFIPANLGISPFDIPEAESEVLEGPLIEYSGVALGLLKLTSAV---------KSVVVI 252

Query: 242 GAVITTFSSPILNTLATLGVLLIKQLAVLFVAI-LISTIFPRFTIDQAAKFYWKWPTIIA 300
           G  I  F       L  L V  +K L +    + ++     R  IDQA  FY KWP ++ 
Sbjct: 253 GLGIVLFFPNGPEGLFGLVVFALKCLVITVCGVSVLRAAVGRMRIDQAVIFYLKWPELLG 312

Query: 301 ALGAILASL 309
                L ++
Sbjct: 313 IASLALVAM 321


>gb|AAF65735.1|AF228525_5 (AF228525) F420H2 dehydrogenase subunit FpoH [Methanosarcina mazei]
           Length = 347
           
 Score =  124 bits (309), Expect = 1e-27
 Identities = 95/307 (30%), Positives = 152/307 (48%), Gaps = 25/307 (8%)

Query: 10  LILLYATFVGFMF-MGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHG- 61
           L+L+ A F+G M  + I RK++A +  R GP       + Q + D IKLF  KE+V  G 
Sbjct: 22  LVLVGAIFLGGMAAVWIERKLSADIQLRYGPSRVGKFGLLQLVADAIKLF-TKEDVRPGN 80

Query: 62  ---VIFDFGIVFALGATILALMFIPLGSI---------SVLRAYGDLILITFLLEIPMLG 109
               ++D   VF L +  L L+ IP+G++         +V      ++ I  +  I + G
Sbjct: 81  ADRFLYDNAPVFMLTSLFLMLVAIPVGAVFIDGNLYPLAVTEMDISILFIEAVSAINIFG 140

Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
           I  AA  S N Y+ +GA R    ++  +VPLG AIV++A   G+ +  +I  AQ    W+
Sbjct: 141 IFMAAYGSNNKYSLLGAFRNFARMIGYEVPLGIAIVSVAVMTGSLNIIDITSAQGSFVWN 200

Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
           IF  P  +  + + I L A  G+ PFD   +  E+  G + E+ G   G++     + + 
Sbjct: 201 IFLQP--IGFVVFFIALMADLGRLPFDQNESEEELVAGWVTEYTGMRFGLVFFAEYMHMI 258

Query: 230 AETLFFSNIFLGGAVITTF--SSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
             +   + +FLGG  +  F  ++ +L  +A  G+LL+K + VL   I +    PRF IDQ
Sbjct: 259 LGSFLVALLFLGGWNVPAFVANNAVLGLIAPTGILLLKTVLVLMTIIGMRWAVPRFRIDQ 318

Query: 288 AAKFYWK 294
                WK
Sbjct: 319 VVDMSWK 325


>pir||A75115 probable NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1
           PAB1893 [similarity] - Pyrococcus abyssi (strain Orsay)
           >gi|5458145|emb|CAB49634.1| (AJ248285) CO-induced
           hydrogenase related, subunit K [Pyrococcus abyssi]
           Length = 321
           
 Score =  118 bits (294), Expect = 6e-26
 Identities = 94/323 (29%), Positives = 154/323 (47%), Gaps = 22/323 (6%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENV-- 58
           ++  ++  IL+  Y + +  +F GI RK+ AR+ RRIGPPI QP  D +KL  K+  +  
Sbjct: 3   VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPN 62

Query: 59  THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
           T   +F    V  L   I  L + P+G   +    GD+I+  +LL +    ++   MSSG
Sbjct: 63  TANFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMSSG 122

Query: 119 NPYAGIGAQRALLTLLAIQ--VPLG-FAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
           +PY  IGA R +  L++ +  + LG FA++      G    + +    + + W +  + +
Sbjct: 123 SPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPM-V 181

Query: 176 LLAAIAYDIVLQAMFGKEP----FDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF-A 230
            +A +    V  +    E     F+I  A  EI+ G +VE+ G+YLGI+++  +I  F A
Sbjct: 182 WVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIA 241

Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIF----PRFTID 286
            +L  + +F     I      I+N       LLI    V  V ++  TIF     R  I 
Sbjct: 242 ASLVVAVLFPWQVGIPGIQGYIVN-------LLIHTAKVFIVLLVAKTIFRTVTGRLKIT 294

Query: 287 QAAKFYWKWPTIIAALGAILASL 309
           QA    W      + +GA+L +L
Sbjct: 295 QAVNLLWTRVFAASIVGALLLAL 317


>pir||B71018 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PH1439
           [similarity] - Pyrococcus horikoshii
           >gi|3257863|dbj|BAA30546.1| (AP000006) 321aa long
           hypothetical NADH-ubiquinone oxidoreductase subunit
           [Pyrococcus horikoshii]
           Length = 321
           
 Score =  117 bits (291), Expect = 1e-25
 Identities = 93/316 (29%), Positives = 152/316 (47%), Gaps = 16/316 (5%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENV--THGV 62
           ++  IL+ +Y +    +F GI RK+ AR+ RRIGPPI QP  D +KL  K+  +  T   
Sbjct: 7   LIGLILLYIYVSITSLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPNTANF 66

Query: 63  IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYA 122
           +F    +  L   I  L + PLG   +    GD+I+  +LL +    ++   +SSG+PY 
Sbjct: 67  MFRAAPILMLATVIALLAYTPLGFPPLFATKGDIIVFIYLLTLADFFLILGVISSGSPYG 126

Query: 123 GIGAQRALLTLLAIQ--VPLG-FAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
            IGA R +  L++ +  + LG F+++      G    + +    + + W +  + + +A 
Sbjct: 127 KIGAAREVAMLISREPAMMLGVFSVMWGISKLGVKRPFSLGSLYEHNIWELGPM-VWVAG 185

Query: 180 IAYDIVLQAMFGKEP----FDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF-AETLF 234
           I    V  A    E     F+I  A  EI+ G +VE+ G+YLGI+++  +I  F A +L 
Sbjct: 186 IILIYVFMAWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIATSLV 245

Query: 235 FSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVA-ILISTIFPRFTIDQAAKFYW 293
            + +F     I      I N    L +  +K   VLF+A  +  T+  R  I QA    W
Sbjct: 246 VAVLFPWQVRIPGIEGYITN----LMIHTLKVFIVLFIAKTVFRTVTGRLRITQAVNLLW 301

Query: 294 KWPTIIAALGAILASL 309
                 + +GA+L  L
Sbjct: 302 TRVFAASVVGALLLVL 317


>gi|11466757 ndh1 [Marchantia polymorpha] >gi|128619|sp|P06255|NU1C_MARPO
           NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
           >gi|66138|pir||DELVN1 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - liverwort (Marchantia polymorpha)
           chloroplast >gi|456521|emb|CAA28139.1| (X04465) ndh1
           [Marchantia polymorpha]
           Length = 368
           
 Score =  108 bits (266), Expect = 1e-22
 Identities = 88/333 (26%), Positives = 157/333 (46%), Gaps = 35/333 (10%)

Query: 5   IVNAILILLYATFVGFMFM-GIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKEN 57
           I+ +ILIL+    +G + +  + RK++A + +RIGP       I Q + D IKLF K++ 
Sbjct: 30  IIFSILILMLGVTIGVLVLVWLERKISAAIQQRIGPEYAGPLGIIQALADGIKLFLKEDI 89

Query: 58  V-THGVI--FDFGIVFALGATILALMFIPLGSISVLRAY--GDLILITFLLEIPMLGIMF 112
           V   G +  F+ G +  L    L+ + IP     +L  +  G    I     +P LG++ 
Sbjct: 90  VPAQGDVWLFNIGPILVLIPVFLSYLVIPFEYNVILANFSIGVFFWIAVSSVVP-LGLLM 148

Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG---WS 169
           A   S N Y+ +G  RA    ++ ++PL  +++++A    + ST +IV AQ  +G   W+
Sbjct: 149 AGYGSNNKYSFLGGLRAAAQSISYEIPLALSVLSIALLSNSLSTVDIVEAQSKYGFLSWN 208

Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
           ++  P  +  I + I   A   + PFD+  A  E+  G   E+ G       +   + L 
Sbjct: 209 LWRQP--IGFIVFFIASLAECERLPFDLPEAEEELVAGYQTEYSGMKFAFFYLASYLNLL 266

Query: 230 AETLFFSNIFLGG----------------AVITTFSSPILNTLATLGVLLIKQLAVLFVA 273
             +LF + ++LGG                 +++   S +++ +  + + L+K    LF++
Sbjct: 267 VSSLFVTILYLGGWHFSIPFFSLFKNFEWNLMSNGISEVISIIIGIVITLVKSYLFLFIS 326

Query: 274 ILISTIFPRFTIDQAAKFYWKWPTIIAALGAIL 306
           I+     PR  IDQ     WK+  +  ALG +L
Sbjct: 327 IMTRWTLPRIRIDQLLNLGWKF-LLPIALGNLL 358


>emb|CAB44668.1| (AJ242867) NDH-A protein [Anabaena PCC7120]
           Length = 372
           
 Score =  106 bits (263), Expect = 3e-22
 Identities = 84/315 (26%), Positives = 147/315 (46%), Gaps = 30/315 (9%)

Query: 9   ILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHGV 62
           IL+L+ AT    + + + RK++A   +RIGP       +  P+ D +KL  K++ V    
Sbjct: 35  ILMLIGATVGVLVCVWLERKISAAAQQRIGPEYIGPLGLLAPVADGLKLVFKEDIVPAQA 94

Query: 63  ---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAMSSG 118
              +F  G +  +    L+ + +P G   V+   G  I +   L  I  +G++ A  SS 
Sbjct: 95  DPWLFTLGPILVVLPVFLSYLIVPFGQNIVITNVGTGIFLWIALSSIQPIGLLMAGYSSN 154

Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ---VHGWSIFHLPL 175
           N Y+ +G  RA    ++ ++PL  +++A+     + ST +IV  Q    + GW+I+  P 
Sbjct: 155 NKYSLLGGLRAAAQSISYEIPLALSVLAIVMMSNSLSTVDIVNQQSGYGILGWNIWRQP- 213

Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
            L  + + I   A   + PFD+  A  E+  G   E+ G    +  +   + L    L  
Sbjct: 214 -LGFMIFWIAALAECERLPFDLPEAEEELVAGYQTEYSGMKFALFYLSSYVNLILSALLV 272

Query: 236 SNIFLGG------------AVITTFSSPILNTL-ATLGV--LLIKQLAVLFVAILISTIF 280
           + ++LGG             V  + ++P+L  + A LG+   L+K   ++F+AIL+    
Sbjct: 273 AVLYLGGWDFPIPINVLANLVGVSEANPVLQVVSAALGITMTLVKAYFLVFIAILLRWTV 332

Query: 281 PRFTIDQAAKFYWKW 295
           PR  IDQ     WK+
Sbjct: 333 PRVRIDQLLDLGWKF 347


>sp|P26522|NU1C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 >gi|319842|pir||QXYB1
           NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
           Synechocystis sp. (strain PCC 6803)
           >gi|47555|emb|CAA44374.1| (X62517) NDHA [Synechocystis
           sp.] >gi|1001395|dbj|BAA10885.1| (D64006) NADH
           dehydrogenase subunit 1 [Synechocystis sp.]
           Length = 372
           
 Score =  106 bits (262), Expect = 4e-22
 Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 36/332 (10%)

Query: 8   AILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHG 61
           +IL+++ AT    + + + RK++A   +RIGP       + QP+ D IKL  K++ V   
Sbjct: 34  SILMIIGATVGVLVVVWLERKISAAAQQRIGPEYAGPLGVLQPVADGIKLVFKEDVVPAK 93

Query: 62  V---IFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSS 117
               +F  G V  +    L+ + +P G   V+      + L   L  I  +G++ +  +S
Sbjct: 94  ADPWLFTLGPVLVVLPVFLSYLIVPFGQNLVITDINVGIFLWIALSSIAPIGLLMSGYAS 153

Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ---VHGWSIFHLP 174
            N Y+ +G  RA    ++ ++PL  A++A+     + ST +IV  Q    + GW+I+  P
Sbjct: 154 NNKYSLLGGLRAAAQSISYEIPLSLAVLAIVMMSNSLSTIDIVDQQSGYGILGWNIWRQP 213

Query: 175 LLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLF 234
             +  + + I   A   + PFD+  A  E+  G   E+ G    +  +   + L    L 
Sbjct: 214 --VGFLIFWIAALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYVNLVLSALV 271

Query: 235 FSNIFLGGAVITTFSSPILNTLATLGV------------------LLIKQLAVLFVAILI 276
           FS ++LGG     F  P+ N    LGV                   ++K   ++F+AIL+
Sbjct: 272 FSVLYLGG---WDFPIPLENVANWLGVAPTTSWLQVLMAALGITMTVLKSYFLIFIAILL 328

Query: 277 STIFPRFTIDQAAKFYWKWPTIIAALGAILAS 308
               PR  IDQ     WK+   +A    ++ +
Sbjct: 329 RWTVPRVRIDQLLNLGWKFLLPVALANLLITA 360


>pir||E70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoH1 -
           Aquifex aeolicus >gi|2983738|gb|AAC07299.1| (AE000734)
           NADH dehydrogenase I chain H [Aquifex aeolicus]
           Length = 336
           
 Score =  105 bits (260), Expect = 6e-22
 Identities = 92/323 (28%), Positives = 146/323 (44%), Gaps = 29/323 (8%)

Query: 9   ILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHGV 62
           +++   A  +G       RK+   +  R+GP       I QP+ D +KL  K+  +  G 
Sbjct: 16  VIVFSLALGIGAYLTWFERKLAGHIQNRLGPTVVGKFGILQPLADALKLATKEVIIPRGA 75

Query: 63  ---IFDFGIVFALGATILALMFIPLG-SISVLRAYGDLIL----ITFLL-----EIPMLG 109
              ++   +V AL  +IL L  IP G    V   Y + I+    I  LL      + + G
Sbjct: 76  DKPVYYAAVVMALVPSILLLTIIPFGPGFRVGNTYIEPIIADVNIALLLAFAFGSLSVYG 135

Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG-W 168
            +F+  +S + YA IG+ R    ++A +V LGF+++ +    GT ST  IV AQ   G W
Sbjct: 136 TIFSGWASNSKYAFIGSLRKAAVVIAYEVVLGFSVLGVILLAGTLSTVGIVEAQIQKGVW 195

Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQV-QHAIG 227
            IF+ P  +A I Y   + A  G+ PFDI  A  E+  G  VE+GG   G   + +  + 
Sbjct: 196 FIFYQP--VAFILYLFCMLAESGRVPFDIQEAEAELVTGYNVEYGGMKFGAFPLAEWYVN 253

Query: 228 LFAETLFFSNIFLGGAVITTFSSP-ILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
           + A +     +F GG     +  P I   L+     + K  A++F  + +    PRF   
Sbjct: 254 VIALSAIAVVLFFGG-----WDGPHIFGPLSPYFWFVFKTFALVFFTLWLHWTLPRFQAK 308

Query: 287 QAAKFYWKWPTIIAALGAILASL 309
              +  WK    IA L  I+ ++
Sbjct: 309 DITEIAWKILLPIAILNVIITAV 331


>gi|11466443 subunit 1 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
           >gi|7259586|gb|AAF43887.1|AF166114_99 (AF166114) subunit
           1 of NADH-plastoquinoneoxidoreductase [Mesostigma
           viride]
           Length = 367
           
 Score =  105 bits (260), Expect = 6e-22
 Identities = 84/317 (26%), Positives = 144/317 (44%), Gaps = 33/317 (10%)

Query: 9   ILILLYATFVGFMFM-GIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHG 61
           IL+L+    VG + +  + RK++A V +RIGP       + QP+ D +KL  K++ +   
Sbjct: 34  ILLLIILAVVGVLVVVWLERKISAAVQQRIGPEYAGPLGVLQPLADGLKLAFKEDIIPSK 93

Query: 62  ---VIFDFGIVFALGATILALMFIPLGSISVLRAY--GDLILITFLLEIPMLGIMFAAMS 116
              ++F  G    +    L+ + +P G   ++     G    IT     P LG++ +   
Sbjct: 94  GDVLLFTLGPAIVVIPIFLSYLIVPFGENLIVSNINLGIFFWITVSSVAP-LGLLMSGYG 152

Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GWSIFHL 173
           S N Y+ +G  RA    L+ ++PL   ++++     + ST +IV  Q  +   GW+I+  
Sbjct: 153 SNNKYSFLGGLRATAQSLSYEIPLALCVLSICLLSDSLSTIDIVQKQSTYGILGWNIWRQ 212

Query: 174 PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETL 233
           P  +  IA+ I   A   + PFD+  A  E+  G   E+ G   G+  +   + L    L
Sbjct: 213 P--IGFIAFIIAALAECERLPFDLPEAEEELVAGYQTEYTGMKFGLFYIGSYVNLLVSAL 270

Query: 234 FFSNIFLGGAVITTFSSPILNTLAT---------------LGVLLIKQLAVLFVAILIST 278
           F S ++LGG  +      +LN ++                +G+ L+K    LF++IL   
Sbjct: 271 FASVLYLGGWSLPIPIEFLLNKMSLNASDSEVQVISAFLGIGMTLLKTYLFLFLSILTRW 330

Query: 279 IFPRFTIDQAAKFYWKW 295
             PR  IDQ     WK+
Sbjct: 331 TMPRVRIDQLLDLGWKF 347


>emb|CAA76118.1| (Y16191) echB [Methanosarcina barkeri]
           Length = 285
           
 Score =  104 bits (256), Expect = 2e-21
 Identities = 80/295 (27%), Positives = 138/295 (46%), Gaps = 43/295 (14%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTHGVIF 64
           I+  IL+L+ A  +G +  GI RK+TAR+  R+GPP+ QP  D  KL   K+N+      
Sbjct: 4   ILTIILVLIGAPIIGCLASGIDRKITARLQGRVGPPLLQPYYDVKKLL-SKDNMVVNPSQ 62

Query: 65  DFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYAGI 124
           +F +V  L   IL+L  +            D ++I F+  +  + ++   MS+G+PYA I
Sbjct: 63  NFYVVVYLAFIILSLFMLVFKQ--------DFLMIIFVYTVASVALVVGGMSTGSPYARI 114

Query: 125 GAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAIAYDI 184
           G+ R ++ +L+ +  L    +A+    GTF    ++ A       + + PL+   IA  +
Sbjct: 115 GSSREIMAILSYEPVLILYALAIYLLTGTFKLSALLDASSP---LLMYTPLIF--IAMIV 169

Query: 185 VLQAMFGKEPFDIMIA---PGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLG 241
           VL     K PFD   +     E+  G   E+GG     +++ H         F+  +FL 
Sbjct: 170 VLNIKLKKSPFDYSTSHHGHQELIKGMTTEYGGPGFATIEIAH---------FYEYVFLT 220

Query: 242 GAVITTF-SSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKW 295
           G +   + S+P++  L  +G+          +A L+  +    T    A+ YW+W
Sbjct: 221 GLIFLFWASTPVIGVL--IGI----------IAYLLVIVIDNIT----ARVYWQW 259


>gi|11499419 F420H2:quinone oxidoreductase, 41.2 kDa subunit, putative
           [Archaeoglobus fulgidus] >gi|7431961|pir||F69478 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 AF1831
           [similarity] - Archaeoglobus fulgidus
           >gi|2648714|gb|AAB89419.1| (AE000976) F420H2:quinone
           oxidoreductase, 41.2 kDa subunit, putative
           [Archaeoglobus fulgidus]
           Length = 369
           
 Score =  103 bits (255), Expect = 2e-21
 Identities = 81/279 (29%), Positives = 136/279 (48%), Gaps = 18/279 (6%)

Query: 27  RKVTARVHRRIGP-----PI---YQPIIDTIKLFGKKENV---THGVIFDFGIVFALGAT 75
           RK+TAR+  R+GP     PI    Q + D I+ F ++  V    H   F    + A    
Sbjct: 75  RKLTARIQWRVGPLEVARPIRGAIQALADGIRYFFQEAIVHREAHRPYFVQLPILAFIPV 134

Query: 76  ILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLL 134
           +L +MFIP GS + +       + +TF+  IP+  I+    +S + +A IG+ R      
Sbjct: 135 LLPIMFIPAGSAVGIYTPNAIQLTVTFIALIPIT-IVAIGWASNSRFAYIGSVREAFMYF 193

Query: 135 AIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAIAYDIVLQAMFGKEP 194
           A +VP   A++++   YG+   Y  V  Q     ++ +    +A I Y I +     + P
Sbjct: 194 AYEVPFIIAVISMIFLYGSGDAYVAVEKQSAIPGALLNP---IAFIVYLIAMLMATSRLP 250

Query: 195 FDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGGAVITTFSSPILN 254
           F+I  A  EI+ GP VE+ G   G++ V     L+  TL F+ +FLGG   +    P+L 
Sbjct: 251 FEIPEADQEIAFGPFVEYSGILFGLVMVLAYEKLYIMTLLFTILFLGG--WSGIYCPLLG 308

Query: 255 TLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
            L     + IK + V+ + +++ +I+ R+ +DQA +  W
Sbjct: 309 DLNGPLWMFIKTIVVISILVIVRSIYARYRLDQALRIGW 347


>emb|CAA09812.1| (AJ011848) NADH dehydrogenase ND1 [Hordeum vulgare]
           Length = 362
           
 Score =  101 bits (250), Expect = 9e-21
 Identities = 90/322 (27%), Positives = 149/322 (45%), Gaps = 39/322 (12%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENV 58
           I+  + +LL  T    + + + R+++A + +RIGP       + Q I D  KL  K++ +
Sbjct: 29  ILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDIL 88

Query: 59  -THGVI--FDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLL----EIPMLGIM 111
            + G I  F  G   A+ + +L+ + IPLG   VL    DL +  FL      I  +G++
Sbjct: 89  PSRGDISLFSIGPSIAVISVLLSFLVIPLGYHFVL---ADLSIGVFLWIAISSIAPIGLL 145

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GW 168
            A  SS N Y+  G  RA    ++ ++PL F ++A++    + ST +IV AQ  +   GW
Sbjct: 146 MAGYSSNNKYSFSGGLRAAAQSISYEIPLTFCVLAISLLSNSSSTVDIVEAQSKYGFFGW 205

Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
           +I+  P  +  + + I   A   + PFD+  A  E+  G   E+ G   G+  +   + L
Sbjct: 206 NIWRQP--IGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNL 263

Query: 229 FAETLFFSNIFLGGAVITTFSSP---------------ILNTLATLGVLLIKQLAVLFVA 273
              +LF + ++LGG     FS P               IL     + + L K    LF++
Sbjct: 264 LVSSLFVTVLYLGG---WNFSIPYISFFDFFQMNKAVGILEMTMGIFITLTKAYLFLFIS 320

Query: 274 ILISTIFPRFTIDQAAKFYWKW 295
           I I    PR  +DQ     WK+
Sbjct: 321 ITIRWTLPRMRMDQLLNLGWKF 342


>gi|11467260 NADH dehydrogenase ND1 [Zea mays] >gi|400636|sp|P25706|NU1C_MAIZE
           NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
           >gi|320098|pir||JQ1671 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - maize chloroplast
           >gi|12420|emb|CAA44228.1| (X62370) NADH Dehydrogenase
           subunit  A [Zea mays] >gi|902289|emb|CAA60353.1|
           (X86563) NADH dehydrogenase ND1 [Zea mays]
           Length = 362
           
 Score =  100 bits (246), Expect = 3e-20
 Identities = 89/322 (27%), Positives = 149/322 (45%), Gaps = 39/322 (12%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENV 58
           I+    +LL  T    + + + R+++A + +RIGP       + Q I D  KL  K++ +
Sbjct: 29  ILPIFALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDIL 88

Query: 59  -THGVI--FDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLL----EIPMLGIM 111
            + G I  F  G   A+ + +L+ + IPLG   VL    DL +  FL      I  +G++
Sbjct: 89  PSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVL---ADLSIGVFLWIAISSIAPIGLL 145

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GW 168
            A  SS N Y+  G  RA    ++ ++PL F ++A++    + ST +IV AQ  +   GW
Sbjct: 146 MAGYSSNNKYSFSGGLRAAAQSISYEIPLTFCVLAISLLSNSSSTVDIVEAQSKYGFFGW 205

Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
           +++  P  +  + + I   A   + PFD+  A  E+  G   E+ G   G+  +   + L
Sbjct: 206 NLWRQP--IGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNL 263

Query: 229 FAETLFFSNIFLGGAVITTFSSP---------------ILNTLATLGVLLIKQLAVLFVA 273
              +LF + ++LGG     FS P               IL  +  + + L K    LF++
Sbjct: 264 LVSSLFVTVLYLGG---WNFSIPYISFFGFFQMNKIIGILEMVIGIFITLTKAYLFLFIS 320

Query: 274 ILISTIFPRFTIDQAAKFYWKW 295
           I I    PR  +DQ     WK+
Sbjct: 321 ITIRWTLPRMRMDQLLNLGWKF 342


>gi|11466852 NADH dehydrogenase ND1 [Oryza sativa]
           >gi|128620|sp|P12124|NU1C_ORYSA NADH-PLASTOQUINONE
           OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
           >gi|66139|pir||DERZN1 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - rice chloroplast
           >gi|669087|emb|CAA33910.1| (X15901) NADH dehydrogenase
           ND1 [Oryza sativa] >gi|226676|prf||1603356DD NADH
           dehydrogenase ND1 [Oryza sativa]
           Length = 362
           
 Score =  100 bits (246), Expect = 3e-20
 Identities = 88/319 (27%), Positives = 150/319 (46%), Gaps = 33/319 (10%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENV 58
           I+  + +LL  T    + + + R+++A + +RIGP       + Q I D  KL  K++ +
Sbjct: 29  ILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDIL 88

Query: 59  -THGVI--FDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLL----EIPMLGIM 111
            + G I  F  G   A+ + +L+ + IPLG   VL    DL +  FL      I  +G++
Sbjct: 89  PSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVL---ADLSIGVFLWIAISSIAPIGLL 145

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GW 168
            A  SS N Y+  G  RA    ++ ++PL F ++A++    + ST +IV AQ  +   GW
Sbjct: 146 MAGYSSNNKYSFSGGLRAAAQSISYEIPLTFCVLAISLLSNSSSTVDIVEAQSKYGFFGW 205

Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
           +++  P  +  + + I   A   + PFD+  A  E+  G   E+ G   G+  +   + L
Sbjct: 206 NLWRQP--IGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNL 263

Query: 229 FAETLFFSNIFLGG-----AVITTFS-------SPILNTLATLGVLLIKQLAVLFVAILI 276
              +LF + ++LGG       I+ F          IL    ++ + L K    LF++I I
Sbjct: 264 LVSSLFVTVLYLGGWNLSIPYISFFGFFQMNKMVGILEMTMSIFITLTKAYLFLFISITI 323

Query: 277 STIFPRFTIDQAAKFYWKW 295
               PR  +DQ     WK+
Sbjct: 324 RWTLPRMRMDQLLNLGWKF 342


>sp|Q00242|NU1C_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 HOMOLOG
           >gi|541331|pir||JQ2135 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - Plectonema boryanum
           >gi|216818|dbj|BAA00814.1| (D01014) NADH-ubiquinone
           oxidoreductase chain 1 homolog [Plectonema boryanum]
           Length = 372
           
 Score = 99.5 bits (244), Expect = 5e-20
 Identities = 82/328 (25%), Positives = 155/328 (47%), Gaps = 30/328 (9%)

Query: 9   ILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENV---T 59
           +++LL AT    + + + RK++A   +RIGP       +  P+ D +KL  K++ V    
Sbjct: 35  LIMLLAATVSVLVVVWLERKISAAAQQRIGPEFIGPLGVLAPLADGLKLVLKEDVVPAKA 94

Query: 60  HGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSG 118
             ++F  G    +    L+ + +P G    +   G  + L   L  +  +G++ +  +S 
Sbjct: 95  DKLLFTLGPAIVVIPVFLSYLILPFGQNLQITDVGLGIFLWIALSSVVPIGLLMSGYASN 154

Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ---VHGWSIFHLPL 175
           N Y+ +G  RA    ++ ++PL  +++A+     + ST +IV  Q    + GW+I+  P 
Sbjct: 155 NKYSLLGGLRAAAQSISYELPLALSVLAVVMMSNSLSTVDIVNQQAGYGILGWNIWRQP- 213

Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
            +  I + I   A   + PFD+  A  E+  G   E+ G    +  +   + L    L F
Sbjct: 214 -VGFIIFWIAALAECERIPFDLPEAEEELVAGYQTEYSGMKFALFYLGSYVNLTLSALLF 272

Query: 236 SNIFLGG-------AVITTF-----SSPILNTL-ATLGV--LLIKQLAVLFVAILISTIF 280
           + ++LGG       +VI+       S+P L  + AT+G+   L+K   ++F+AIL+    
Sbjct: 273 AVLYLGGWEFPISLSVISGLIGVPESTPWLQLIFATIGIGMTLLKAYFLIFLAILMRWTV 332

Query: 281 PRFTIDQAAKFYWKWPTIIAALGAILAS 308
           PR  IDQ     WK+   ++ +  ++ +
Sbjct: 333 PRVRIDQLLDLGWKFLLPVSLVNLLITA 360


>gi|11467870 subunit 1 of NADH-plastoquinoneoxidoreductase [Nephroselmis
           olivacea] >gi|5880799|gb|AAD54892.1|AF137379_115
           (AF137379) subunit 1 of NADH-plastoquinoneoxidoreductase
           [Nephroselmis olivacea]
           Length = 362
           
 Score = 97.1 bits (238), Expect = 2e-19
 Identities = 88/331 (26%), Positives = 153/331 (45%), Gaps = 31/331 (9%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
           +L V +  + +++ AT    + + + RK++A V +R+GP       + QP+ D +KL  K
Sbjct: 29  VLWVPLPILSLVIVATLGVLVIVWLERKISAGVQQRVGPEYGGALGLLQPLADGLKLVFK 88

Query: 55  KENV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITF----LLEIPM 107
           ++ V   +   +F  G    +    LA + +P G   ++    DL +  F    +  I  
Sbjct: 89  EDVVPAKSDTWLFTLGPAVVVIPIFLAYLVVPFGQQLII---ADLRIGIFFWIAISSIAP 145

Query: 108 LGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
           +G++ +   S N Y+ +G  RA    ++ ++PL   ++++     + ST +IV +Q   G
Sbjct: 146 IGLLMSGYGSNNKYSFLGGLRAAAQSISYELPLAICVLSVCLLADSLSTVDIVESQSSWG 205

Query: 168 ---WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQH 224
              W+I+  P  +  +A+ I   A   + PFD+  A  E+  G   E+ G   G+  V  
Sbjct: 206 ILTWNIWRQP--IGFVAFLIAALAECERLPFDLPEAEEELVAGYQTEYTGMKFGLFYVGS 263

Query: 225 AIGLFAETLFFSNIFLGG-----AV--ITTFSSPILNTLATLGV--LLIKQLAVLFVAIL 275
            + L     F + ++LGG     A+  I   S P     A LG+   L+K    LF AIL
Sbjct: 264 YVNLLVSGCFVTVLYLGGWHGPFAIDGILPDSPPFQVLDAFLGITWTLLKTFLFLFAAIL 323

Query: 276 ISTIFPRFTIDQAAKFYWKWPTIIAALGAIL 306
                PR  IDQ     WK+  +  +LG +L
Sbjct: 324 TRWTLPRVRIDQLLDLGWKF-LLPVSLGNLL 353


>pir||H64364 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) - Methanococcus
           jannaschii >gi|1591222|gb|AAB98508.1| (U67501)
           NADH-ubiquinone oxidoreductase, subunit 1 [Methanococcus
           jannaschii]
           Length = 295
           
 Score = 96.7 bits (237), Expect = 3e-19
 Identities = 85/291 (29%), Positives = 143/291 (48%), Gaps = 35/291 (12%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTHGVIF 64
           ++ AI + ++A  VG + +G+ RK+ AR+  R GPPI Q ++ T+K + K+         
Sbjct: 8   LIGAINLTIHAFLVGSLLLGLHRKIMARIQGRPGPPIIQYLLHTLKFYVKE--------- 58

Query: 65  DFGIVFALGATILALMFIPLGSISVLRA--------YGDLILITFLLEIPMLGIMFAAMS 116
              I F + A     +F+ L  I++  A           L++I  +  +  +      +S
Sbjct: 59  ---ITFPITAGNPLYIFVALLDIAIWLAALIIAIDFKSSLLIIIGIYVLQKIVEHGCGLS 115

Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTY--EIVMAQQVHGWSIFHLP 174
           SG+PY  IG  R++ +  A +VPL FA+VA A Y  T S    +I+  Q++HG  +F +P
Sbjct: 116 SGSPYGKIGGVRSVFS-AAAEVPL-FAVVA-AIYLTTHSVLISDILSYQEIHGSLLFKMP 172

Query: 175 LLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLF 234
             + A A+ I+L +     PF I +   +I  G M E  G    I+ +  AI  F     
Sbjct: 173 --ICAFAFFILLVSKAPNSPFGI-VKGKDIVSGYMTEHYGLLGAIIYIAEAIAYFVLLWL 229

Query: 235 FSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTI 285
           F  +F+G  VI   +SP+L    TL V+++  + + FV  L   + P  ++
Sbjct: 230 FIAVFIGPLVI---NSPVL----TLAVMVVMTVILAFVNGLTPLLAPHHSV 273


>pir||F75060 probable hydrogenase (EC 1.18.99.1) chain 4 PAB1393 [similarity] -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458892|emb|CAB50379.1| (AJ248287) HYDROGENASE-4
           COMPONENT C (EC 1.-.-.-) [Pyrococcus abyssi]
           Length = 299
           
 Score = 96.3 bits (236), Expect = 4e-19
 Identities = 87/293 (29%), Positives = 135/293 (45%), Gaps = 20/293 (6%)

Query: 4   VIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENV-THGV 62
           +I   IL L    F+     GI RKV AR+  R GPP+ Q   D +KL      + T   
Sbjct: 1   MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTRNW 60

Query: 63  IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYA 122
           +F      A  + I+A + +P G +  L+   +LI+  + + +  + +M A  S  N ++
Sbjct: 61  LFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFS 120

Query: 123 GIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHL-PLLLAAIA 181
            +G+ R ++ +L ++  L      LA   G+    EI+        S  HL P L+  +A
Sbjct: 121 HLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII--------SNLHLTPSLI--VA 170

Query: 182 YDIVLQAMF---GKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF-SN 237
           Y I+  +M+   G  PFD+  A  E+  GP+ E+ G+ LGI      I  FA   FF S 
Sbjct: 171 YAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSL 230

Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
           + L    ITT +  +L  L    + L+  LA+  V   +     R  IDQ AK
Sbjct: 231 VVLPLVPITTQAKALLALL----LQLLLTLALYPVIASLEATNARLRIDQVAK 279


>pir||E81991 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain H NMA0009
           [imported] - Neisseria meningitidis (group A strain
           Z2491) >gi|7378787|emb|CAB83329.1| (AL162752) NADH
           dehydrogenase I chain H [Neisseria meningitidis Z2491]
           Length = 358
           
 Score = 96.3 bits (236), Expect = 4e-19
 Identities = 82/314 (26%), Positives = 137/314 (43%), Gaps = 25/314 (7%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPI------YQPIIDTIKLFGK 54
           ++ VIV  ++IL+             RKV   +  R+GP +       QP  D  KL  K
Sbjct: 25  VVSVIVKIVIILIPLILTVAYLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFK 84

Query: 55  ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGI 110
              +  +++  +F  G + +L  +  A   IP     VL      L+ I  +  + + G+
Sbjct: 85  EVTRPRLSNKALFYIGPIMSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGV 144

Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ--VHGW 168
           + A  +S + Y+ +GA RA    ++ ++ +  A+V +    G+ +  +IV AQ   + G 
Sbjct: 145 IIAGWASNSKYSFLGAMRASAQSISYEIAMSAALVCVVMVSGSMNFSDIVAAQAKGIAGG 204

Query: 169 SIFH---LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHA 225
           S+F    LPL    I Y I   A   + PFD+     EI  G  VE+ G    +  +   
Sbjct: 205 SVFSWNWLPLFPIFIVYLISAVAETNRAPFDVAEGESEIVAGHHVEYSGFAFALFFLAEY 264

Query: 226 IGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGV-----LLIKQLAVLFVAILISTIF 280
           I +   +   S +FLGG     + SP   +   +G      + +K  AVL+  + I   F
Sbjct: 265 IFMILISALTSLMFLGG-----WLSPFPQSWGFIGTPSAFWMFVKMAAVLYWYLWIRATF 319

Query: 281 PRFTIDQAAKFYWK 294
           PR+  DQ  +  WK
Sbjct: 320 PRYRYDQIMRLGWK 333


>gi|11497586 NADH dehydrogenase ND1 subunit [Spinacia oleracea]
           >gi|7636167|emb|CAB88789.1| (AJ400848) NADH
           dehydrogenase ND1 subunit [Spinacia oleracea]
           Length = 365
           
 Score = 96.3 bits (236), Expect = 4e-19
 Identities = 85/317 (26%), Positives = 144/317 (44%), Gaps = 36/317 (11%)

Query: 9   ILILLYATFVGFM-FMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHG 61
           ILIL+    +G +  + + R+++A + +RIGP       I Q + D  KL  K EN+   
Sbjct: 35  ILILVLGITIGVLVIVWLEREISASIQQRIGPEYAGPLGILQALADGTKLLFK-ENLLPS 93

Query: 62  ----VIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLL----EIPMLGIMFA 113
                +F  G   A+ + +L  + IP GS  VL    DL +  FL      I  +G++ +
Sbjct: 94  RGDTYLFSIGPSIAVISILLGYLIIPFGSRLVL---ADLSIGVFLWIAVSSIAPIGLLMS 150

Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GWSI 170
              S N Y+ +G  RA    ++ ++PL   +++++    + ST +IV AQ  +   GW++
Sbjct: 151 GYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSSSTVDIVEAQSKYGFWGWNL 210

Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
           +  P  +  I + I   A   + PFD+  A  E+  G   E+ G   G+  V   + L  
Sbjct: 211 WRQP--IGFIVFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLI 268

Query: 231 ETLFFSNIFLGG---AVITTFSSP---------ILNTLATLGVLLIKQLAVLFVAILIST 278
            +LF + ++LGG   ++   F S          +  T   + + L K    LF+ I    
Sbjct: 269 SSLFVTVLYLGGWNLSIPYIFISEFFEINKIDGVFGTTIGIFITLAKTFLFLFIPITTRW 328

Query: 279 IFPRFTIDQAAKFYWKW 295
             PR  +DQ     WK+
Sbjct: 329 TLPRLRMDQLLNLGWKF 345


>gi|11466175 NADH dehydrogenase subunit 1 [Naegleria gruberi]
           >gi|10444210|gb|AAG17776.1|AF288092_1 (AF288092) NADH
           dehydrogenase subunit 1 [Naegleria gruberi]
           Length = 327
           
 Score = 95.2 bits (233), Expect = 9e-19
 Identities = 82/314 (26%), Positives = 139/314 (44%), Gaps = 21/314 (6%)

Query: 11  ILLYATFVGFMFMGII------RKVTARVHRRIGPPIY------QPIIDTIKLFGKK--- 55
           I+ +  F+ F+ + I       RK  A + RR GP +       QPI D +K F K+   
Sbjct: 9   IIFFLLFLVFLLLTIALTTLVERKAMASIQRRRGPNVVGFFGFLQPIADGLKAFIKEIVL 68

Query: 56  ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAA 114
            + ++  IF    VF    +IL  + IP G   VL  +   L+ +  +  + + GI+F+ 
Sbjct: 69  PSNSNLFIFLLAPVFTFFCSILLWVVIPFGENKVLIDFPFSLLYLLTISSLSVYGIIFSG 128

Query: 115 MSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLP 174
            SS + YA +G  R+   +++ +V +GF  + +     +F+  ++V+ Q+ + W  F LP
Sbjct: 129 WSSNSKYAFLGGLRSAAQMISYEVCIGFVFIVMIMMTDSFNLIDVVINQE-YVW--FILP 185

Query: 175 LLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLF 234
           L    + + I   A   + PFD+  A  E+  G  VE+      +  +     +   +  
Sbjct: 186 LFPLWLIFFISALAETNRAPFDLPEAEAELVAGYNVEYSSIAFALFFLAEYGNIVLMSSL 245

Query: 235 FSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
            S  F GG +      P+ N L       +K    +F+ + I   FPR+  DQ  K  WK
Sbjct: 246 LSIFFWGGWL--AIPLPLFNLLPDFFTFALKVTLHVFIFVWIRAAFPRYRYDQLMKLGWK 303

Query: 295 WPTIIAALGAILAS 308
               I+ L   L S
Sbjct: 304 VLMPISVLFVYLIS 317


>pir||S37065 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain H - Escherichia
           coli >gi|397905|emb|CAA48367.1| (X68301) NADH
           dehydrogenase I, subunit nuoH [Escherichia coli]
           Length = 325
           
 Score = 94.8 bits (232), Expect = 1e-18
 Identities = 80/304 (26%), Positives = 135/304 (44%), Gaps = 21/304 (6%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
           +L  I+ A++ILL     G       R++      R GP         Q + D IK+F K
Sbjct: 11  ILLTILKAVVILLVVVTCGAFMSFAKRRLLGLFQNRYGPNRVAWGGSLQLVADMIKMFFK 70

Query: 55  KENV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGI 110
           ++ +   +  VIF    + A  + +LA   +P+    V+      IL   ++  + +  +
Sbjct: 71  EDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAV 130

Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
           +FA  SS N Y+ +GA RA    L+ +V LG +++ +    G+F+  +IV + Q H W++
Sbjct: 131 LFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQAGSFNMTDIVNS-QAHVWNV 189

Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
             +P     I + I   A+  + PFD   A  E++ G  +E+ G   G+  V   IG+  
Sbjct: 190 --IPQFFGFITFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVT 247

Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
            +     +F GG     +  P+L          +K    + + ILI    PR   DQ   
Sbjct: 248 ISALMVTLFFGG-----WQGPLLPPFIWFA---LKTAFFMMMFILIRASLPRPRYDQVMS 299

Query: 291 FYWK 294
           F WK
Sbjct: 300 FGWK 303


>gb|AAG23680.1|AF288091_25 (AF288091) NADH dehydrogenase subunit 1 [Thraustochytrium aureum]
           Length = 321
           
 Score = 94.8 bits (232), Expect = 1e-18
 Identities = 82/307 (26%), Positives = 139/307 (44%), Gaps = 24/307 (7%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
           M++  +    I+L        F    RK+   + RR GP       + Q + D +KLF K
Sbjct: 1   MIKFFLKTFSIILPLLIAIAFFTVAERKIIGSIQRRRGPNTVGLFGVTQALADGLKLFLK 60

Query: 55  KE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLIL-ITFLLEIPMLG- 109
           +    + ++ ++F F  +     +++     P+   SV   Y DL L I FLL I  LG 
Sbjct: 61  ESILPSSSNKLLFMFAPIITFFLSLIGWAIFPINENSV---YSDLNLGILFLLAISSLGV 117

Query: 110 --IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
             I+ A  SS + YA +GA R+   +++ ++ +GF ++++    G+ +   IV+AQ+   
Sbjct: 118 YGIIIAGWSSNSKYAFLGALRSAAQMVSYEISIGFILISVIISCGSLNLIRIVIAQE-KI 176

Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
           W  F +PL    I + I   A   + PFD+  A  E+  G  VE+ G    +  +     
Sbjct: 177 W--FFIPLFPMFILFFIACLAETNRHPFDLPEAEAELVSGYNVEYSGIGFALFFLGEYGN 234

Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
           +   + F S +FLGG +      P  N ++   +  IK    + + I     FPR+  DQ
Sbjct: 235 IILISAFCSLLFLGGWLF-----PYFNFISGSIIFSIKTFFFITLFIWARAAFPRYRYDQ 289

Query: 288 AAKFYWK 294
             +  WK
Sbjct: 290 LMRLGWK 296


>emb|CAB67225.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit 1 [Oenothera
           elata subsp. hookeri]
           Length = 363
           
 Score = 94.8 bits (232), Expect = 1e-18
 Identities = 83/321 (25%), Positives = 145/321 (44%), Gaps = 35/321 (10%)

Query: 4   VIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKEN 57
           ++V  + ++L  T    + + + R+++A + +RIGP       I QP+ D IKL  K EN
Sbjct: 29  MLVPILSLVLGITLGVLVIVWLEREISAGIQQRIGPEYAGPMGILQPLADGIKLIFK-EN 87

Query: 58  VTHGV----IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLL----EIPMLG 109
           +        +F  G   A+ + +L+   IP  S  VL    DL +  FL      I  +G
Sbjct: 88  LLPSRGDTRLFSIGPSIAVISILLSYSVIPFSSHLVL---SDLNIGVFLWIAVSSIAPIG 144

Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH--- 166
           ++ +   S N Y+ +G  RA    ++ ++PL   +++++    + ST +IV AQ  +   
Sbjct: 145 LLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCLLSISLLSNSLSTVDIVEAQSKYGLW 204

Query: 167 GWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAI 226
           GW+++  P  +  + + I   A   + PFD+  A  E+  G   E+ G   G+  V   +
Sbjct: 205 GWNLWRQP--IGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYL 262

Query: 227 GLFAETLFFSNIFLGGAVIT------------TFSSPILNTLATLGVLLIKQLAVLFVAI 274
            L   +LF + ++LGG  I+            T    +  T   +   L K    LF++I
Sbjct: 263 NLLVSSLFVTVLYLGGWNISISYIFVPGLFEITKVGRVFGTTIGIFTTLAKTYLFLFISI 322

Query: 275 LISTIFPRFTIDQAAKFYWKW 295
                 PR  +DQ     WK+
Sbjct: 323 TTRWTLPRLRMDQLLNLGWKF 343


>gb|AAF03197.1|AF110138_29 (AF110138) NADH dehydrogenase subunit 1 [Nephroselmis olivacea]
           Length = 329
           
 Score = 94.4 bits (231), Expect = 2e-18
 Identities = 82/297 (27%), Positives = 135/297 (44%), Gaps = 15/297 (5%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKENVTHG 61
           IL ++    VG  ++ +  RKV   + RR GP +       QP+ D +KL  K+  +   
Sbjct: 12  ILGIIVPLLVGVAYLTLAERKVMGSMQRRKGPNVVGIFGLLQPLADGLKLLIKEPVLPSN 71

Query: 62  ---VIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAMSS 117
              +IF F  V      ++A   IP G   +L      +L  F +  + + GI+ A  SS
Sbjct: 72  ANIIIFLFAPVITFVLALVAWAVIPFGEGLLLADVNVGVLYLFAISSLGVYGIIMAGWSS 131

Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
            + YA +GA R+   +++ +V +G  I+ +    G+ +  EIVMAQQ   + I   PL  
Sbjct: 132 NSKYAFLGALRSAAQMVSYEVSIGLIIITVLMCAGSLNLSEIVMAQQTIWYCI---PLFP 188

Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
             I + I   A   + PFD+  A  E+  G  VE+      +  +     +   +   S 
Sbjct: 189 LMILFYISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMIMMSAVCSV 248

Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           +FLGG  +  F+  I + +     L +K +  LF+ I +   FPR+  DQ  +  WK
Sbjct: 249 LFLGG-WLPPFNLVIFSWIPGGVWLGLKVVFFLFIFIWVRAAFPRYRYDQLMRLGWK 304


>pir||E81219 NADH dehydrogenase I, H chain NMB0250 [imported] - Neisseria
           meningitidis (group B strain MD58)
           >gi|7225473|gb|AAF40704.1| (AE002382) NADH dehydrogenase
           I, H subunit [Neisseria meningitidis MC58]
           Length = 358
           
 Score = 94.4 bits (231), Expect = 2e-18
 Identities = 82/314 (26%), Positives = 135/314 (42%), Gaps = 25/314 (7%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPI------YQPIIDTIKLFGK 54
           ++ VIV  ++IL+             RKV   +  R+GP +       QP  D  KL  K
Sbjct: 25  VVSVIVKIVIILIPLILTVAYLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFK 84

Query: 55  ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGI 110
              +  +++  +F  G + +L  +  A   IP     VL      L+ I  +  + + G+
Sbjct: 85  EVTRPKLSNKALFYIGPIMSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGV 144

Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ--VHGW 168
           + A  +S + Y+ +GA RA    ++ ++ +  A+V +    G+ +  +IV AQ   + G 
Sbjct: 145 IIAGWASNSKYSFLGAMRASAQSISYEIAMSAALVCVVMVSGSMNFSDIVAAQAKGIAGG 204

Query: 169 SIFH---LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHA 225
           S+F    LPL    I Y I   A   + PFD+     EI  G  VE+ G    +  +   
Sbjct: 205 SVFSWNWLPLFPIFIVYLISAVAETNRAPFDVAEGESEIVAGHHVEYSGFAFALFFLAEY 264

Query: 226 IGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGV-----LLIKQLAVLFVAILISTIF 280
           I +       S +FLGG     + SP   +   +G      +  K  AVL+  + I   F
Sbjct: 265 IFMILIAALTSLMFLGG-----WLSPFPQSWGIVGTPSAFWMFAKMAAVLYWYLWIRATF 319

Query: 281 PRFTIDQAAKFYWK 294
           PR+  DQ  +  WK
Sbjct: 320 PRYRYDQIMRLGWK 333


>sp|P33603|NUOH_ECOLI NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
           8) (NUO8) >gi|7431904|pir||H64999 NADH dehydrogenase
           (ubiquinone) (EC 1.6.5.3) I chain H - Escherichia coli
           >gi|1788618|gb|AAC75342.1| (AE000317) NADH dehydrogenase
           I chain H [Escherichia coli K12]
           >gi|1799642|dbj|BAA16110.1| (D90859) NADH DEHYDROGENASE
           I CHAIN H (EC 1.6.5.3) (NADH-UBIQUINONE OXIDOREDUCTASE
           CHAIN 8) (NUO8). [Escherichia coli]
           Length = 325
           
 Score = 94.0 bits (230), Expect = 2e-18
 Identities = 83/305 (27%), Positives = 138/305 (45%), Gaps = 23/305 (7%)

Query: 1   MLRVIVNAILILLYATFVG-FMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFG 53
           +L  I+ A++ILL     G FM  G  R++      R GP         Q + D IK+F 
Sbjct: 11  ILLTILKAVVILLVVVTCGAFMSFGE-RRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFF 69

Query: 54  KKENV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLG 109
           K++ +   +  VIF    + A  + +LA   +P+    V+      IL   ++  + +  
Sbjct: 70  KEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYA 129

Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
           ++FA  SS N Y+ +GA RA    L+ +V LG +++ +    G+F+  +IV + Q H W+
Sbjct: 130 VLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQAGSFNMTDIVNS-QAHVWN 188

Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
           +  +P     I + I   A+  + PFD   A  E++ G  +E+ G   G+  V   IG+ 
Sbjct: 189 V--IPQFFGFITFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIV 246

Query: 230 AETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAA 289
             +     +F GG     +  P+L          +K    + + ILI    PR   DQ  
Sbjct: 247 TISALMVTLFFGG-----WQGPLLPPFIWFA---LKTAFFMMMFILIRASLPRPRYDQVM 298

Query: 290 KFYWK 294
            F WK
Sbjct: 299 SFGWK 303


>pir||H83314 NADH dehydrogenase I chain H PA2643 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9948712|gb|AAG06031.1|AE004693_2 (AE004693) NADH
           dehydrogenase I chain H [Pseudomonas aeruginosa]
           Length = 331
           
 Score = 93.6 bits (229), Expect = 3e-18
 Identities = 78/306 (25%), Positives = 133/306 (42%), Gaps = 19/306 (6%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPI------IDTIKLFGK 54
           ++  +V AI++LL     G +   + R++      R GP    P        D +K+F K
Sbjct: 11  IILTVVKAIVVLLAVVICGALLSWVERRLLGLWQDRYGPNRVGPFGAFQLGADMVKMFFK 70

Query: 55  KE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGI 110
           ++        +IF    V A+GA ++A   +P+     +      IL  F +  + +  +
Sbjct: 71  EDWTPPFADKMIFTLAPVIAMGALLVAFAIVPITPTWGVADLNIGILFFFAMAGLTVYAV 130

Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
           +FA  SS N +A +G+ RA    ++ +V L  +++ +    G+F+  +IV  Q  + W  
Sbjct: 131 LFAGWSSNNKFALLGSLRASAQTISYEVFLALSLMGIVAQVGSFNMRDIVQYQIDNVW-- 188

Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
           F +P       + I   A+  + PFD   A  E++ G  +E+ G   G+  V   IG+  
Sbjct: 189 FIIPQFFGFCTFIIAGVAVTHRHPFDQPEAEQELADGYHIEYAGMKWGMFFVGEYIGIVL 248

Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVA--ILISTIFPRFTIDQA 288
            +   + +F GG     +  P L+TL  L           F+   ILI    PR   DQ 
Sbjct: 249 VSALLATLFFGG-----WHGPFLDTLPWLSFFYFAAKTGFFIMLFILIRASLPRPRYDQV 303

Query: 289 AKFYWK 294
             F WK
Sbjct: 304 MAFSWK 309


>pir||B65024 probable hydrogenase (EC 1.18.99.1) chain 4 b2483 [similarity] -
           Escherichia coli (strain K-12)
           >gi|1788828|gb|AAC75536.1| (AE000335) hydrogenase 4
           membrane subunit [Escherichia coli K12]
           >gi|1799911|dbj|BAA16361.1| (D90876) FORMATE
           HYDROGENLYASE SUBUNIT 4 (FHL SUBUNIT 4) (HYDROGENASE 4,
           SUBUNIT 4). [Escherichia coli]
           >gi|1805542|dbj|BAA16371.1| (D90877) FORMATE
           HYDROGENLYASE SUBUNIT 4 (FHL SUBUNIT 4) (HYDROGENASE 4,
           SUBUNIT 4). [Escherichia coli]
           Length = 322
           
 Score = 92.4 bits (226), Expect = 6e-18
 Identities = 75/277 (27%), Positives = 138/277 (49%), Gaps = 16/277 (5%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKE--NVTHGV 62
           +  A+++L+       +F GI R++ AR+H R GP I+Q   D  KLF ++E    + G+
Sbjct: 22  LAQAVILLMLTP----LFTGISRQIRARMHSRRGPGIWQDYRDIHKLFKRQEVAPTSSGL 77

Query: 63  IFDFGIVFALGATILALMFIPLG-SISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPY 121
           +F       + + ++  M +PL  ++S     GDLI + +LL +       + + +G+P+
Sbjct: 78  MFRLMPWVLISSMLVLAMALPLFITVSPFAGGGDLITLIYLLALFRFFFALSGLDTGSPF 137

Query: 122 AGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAIA 181
           AG+GA R L   + ++  L  +++ LA   G+ +  E++      GW+   L  +LA +A
Sbjct: 138 AGVGASRELTLGILVEPMLILSLLVLALIAGS-THIEMISNTLAMGWN-SPLTTVLALLA 195

Query: 182 YDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLG 241
                    GK PFD+  A  E+  GP+ E+ G  L + +     GL  + +  +++F+ 
Sbjct: 196 CGFACFIEMGKIPFDVAEAEQELQEGPLTEYSGAGLALAK----WGLGLKQVVMASLFV- 250

Query: 242 GAVITTFS-SPILNTLATLGVLLIKQLAVLFVAILIS 277
            A+   F  +  L+    L  L++  L VL + +L S
Sbjct: 251 -ALFLPFGRAQELSLACLLTSLVVTLLKVLLIFVLAS 286


>sp|P77858|HYFC_ECOLI HYDROGENASE-4 COMPONENT C >gi|1616952|gb|AAB88565.1| (M63654) HyfC
           [Escherichia coli]
           Length = 315
           
 Score = 92.4 bits (226), Expect = 6e-18
 Identities = 75/277 (27%), Positives = 138/277 (49%), Gaps = 16/277 (5%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKE--NVTHGV 62
           +  A+++L+       +F GI R++ AR+H R GP I+Q   D  KLF ++E    + G+
Sbjct: 15  LAQAVILLMLTP----LFTGISRQIRARMHSRRGPGIWQDYRDIHKLFKRQEVAPTSSGL 70

Query: 63  IFDFGIVFALGATILALMFIPLG-SISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPY 121
           +F       + + ++  M +PL  ++S     GDLI + +LL +       + + +G+P+
Sbjct: 71  MFRLMPWVLISSMLVLAMALPLFITVSPFAGGGDLITLIYLLALFRFFFALSGLDTGSPF 130

Query: 122 AGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAIA 181
           AG+GA R L   + ++  L  +++ LA   G+ +  E++      GW+   L  +LA +A
Sbjct: 131 AGVGASRELTLGILVEPMLILSLLVLALIAGS-THIEMISNTLAMGWN-SPLTTVLALLA 188

Query: 182 YDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLG 241
                    GK PFD+  A  E+  GP+ E+ G  L + +     GL  + +  +++F+ 
Sbjct: 189 CGFACFIEMGKIPFDVAEAEQELQEGPLTEYSGAGLALAK----WGLGLKQVVMASLFV- 243

Query: 242 GAVITTFS-SPILNTLATLGVLLIKQLAVLFVAILIS 277
            A+   F  +  L+    L  L++  L VL + +L S
Sbjct: 244 -ALFLPFGRAQELSLACLLTSLVVTLLKVLLIFVLAS 279


>gi|11466020 NADH dehydrogenase ND1 subunit [Nicotiana tabacum]
           >gi|2924282|emb|CAA77435.1| (Z00044) NADH dehydrogenase
           ND1 subunit [Nicotiana tabacum]
           Length = 363
           
 Score = 92.1 bits (225), Expect = 8e-18
 Identities = 80/317 (25%), Positives = 140/317 (43%), Gaps = 36/317 (11%)

Query: 9   ILILLYATFVGFM-FMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHG 61
           IL L+    +G +  + + R+++A + +RIGP       I Q + D  KL   KEN+   
Sbjct: 33  ILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLL-LKENLIPS 91

Query: 62  V----IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITF----LLEIPMLGIMFA 113
                +F  G   A+ +  L+   IP G   VL    DL +  F    +  I  +G++ +
Sbjct: 92  TGDTRLFSIGPSIAVISIFLSYSVIPFGDHLVL---ADLSIGVFFWIAISSIAPVGLLMS 148

Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GWSI 170
              S N Y+ +G  RA    ++ ++PL   +++++    + ST +IV AQ  +   GW++
Sbjct: 149 GYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLLSNSLSTVDIVEAQSKYGFWGWNL 208

Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
           +  P  +  I + I   A   + PFD+  A  E+  G   E+ G   G+  +   + L  
Sbjct: 209 WRQP--IGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLV 266

Query: 231 ETLFFSNIFLGGAVIT------------TFSSPILNTLATLGVLLIKQLAVLFVAILIST 278
            +LF + ++LGG  ++                 +  TL  + + L K    LF+ I    
Sbjct: 267 SSLFVTVLYLGGWNLSIPYIFVPELFGINKRGKVFGTLIGIFITLAKTYLFLFIPIATRW 326

Query: 279 IFPRFTIDQAAKFYWKW 295
             PR  +DQ     WK+
Sbjct: 327 TLPRLRMDQLLNLGWKF 343


>sp|Q37165|NU1C_ARATH NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
           >gi|1419474|emb|CAA66944.1| (X98298) ndhA [Arabidopsis
           thaliana]
           Length = 360
           
 Score = 91.7 bits (224), Expect = 1e-17
 Identities = 79/295 (26%), Positives = 135/295 (44%), Gaps = 32/295 (10%)

Query: 27  RKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVT----HGVIFDFGIVFALGATI 76
           R+++A + +RIGP       I Q + D  KL  K EN+     +  +F  G   A+ + +
Sbjct: 52  REISAGIQQRIGPEYAGPLGILQALADGTKLLFK-ENLRPSRGNTPLFSIGPSIAVISIL 110

Query: 77  LALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLA 135
           L+   IP  +  VL      + L   +  I  +G++ +   S N Y+ +G  RA    ++
Sbjct: 111 LSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSIS 170

Query: 136 IQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GWSIFHLPLLLAAIAYDIVLQAMFGK 192
            ++PL   +++++    + ST +IV AQ  +   GW+++  P  +  I + I   A   +
Sbjct: 171 YEIPLTLCVLSISLLSNSLSTVDIVEAQSKYGFWGWNLWRQP--IGFIIFLISSLAESER 228

Query: 193 EPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGGAVITTFSSPI 252
            PFD+  A  E+  G   E+ G   G+  V   + L   +LF + ++LGG      SSP 
Sbjct: 229 LPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGG---WNISSPY 285

Query: 253 LNTL----------ATLGVL--LIKQLAVLFVAILISTIFPRFTIDQAAKFYWKW 295
           ++ L           T+G+   L K    LFV+I      PR  +DQ     WK+
Sbjct: 286 ISILELFQRDQIFATTIGIFITLAKTYLFLFVSIATRWTLPRLRMDQLLNLGWKF 340


>sp|P16430|HYCD_ECOLI FORMATE HYDROGENLYASE SUBUNIT 4 (FHL SUBUNIT 4) (HYDROGENASE 3
           COMPONENT D) >gi|78774|pir||S08622 hydrogenase (EC
           1.18.99.1) 3 chain 4 - Escherichia coli
           >gi|41683|emb|CAA35549.1| (X17506) hycD [Escherichia
           coli] >gi|882615|gb|AAA69232.1| (U29579) formate
           hydrogenlyase subunit 4 [Escherichia coli]
           >gi|1789077|gb|AAC75764.1| (AE000356) membrane-spanning
           protein of hydrogenase 3 (part of FHL complex)
           [Escherichia coli K12] >gi|1093497|prf||2104213D hycD
           gene [Escherichia coli]
           Length = 307
           
 Score = 90.9 bits (222), Expect = 2e-17
 Identities = 72/287 (25%), Positives = 127/287 (44%), Gaps = 10/287 (3%)

Query: 11  ILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKE--NVTHGVIFDFGI 68
           ++L+A  V  +  GI R   AR+H R GP + Q   D IKL G++       G +F    
Sbjct: 11  LVLFA--VAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSVGPDASGWVFRLTP 68

Query: 69  VFALGATILALMFIPLGSI-SVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQ 127
              +G  +     +P+ ++ S L   GDLI + +L  I       + + +G+P+  IGA 
Sbjct: 69  YVMVGVMLTIATALPVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGSPFTAIGAS 128

Query: 128 RALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFH-LPLLLAAIAYDIVL 186
           R  +  + ++  L   +   A+  G+ +   I     V+ W +   +PL+LA  A     
Sbjct: 129 REAMLGVLVEPMLLLGLWVAAQVAGSTNISNIT--DTVYHWPLSQSIPLVLALCACAFAT 186

Query: 187 QAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGGAVIT 246
               GK PFD+  A  E+  GP+ E+ G   G+++   ++        F  +F+    + 
Sbjct: 187 FIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVFIPWGQME 246

Query: 247 TFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
           TF++  L  L  L + ++K +  + V  L      R  +D   +  W
Sbjct: 247 TFTAGGL--LLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITW 291


>gi|7525090 NADH dehydrogenase ND1 [Arabidopsis thaliana]
           >gi|5881751|dbj|BAA84442.1| (AP000423) NADH
           dehydrogenase ND1 [Arabidopsis thaliana]
           Length = 360
           
 Score = 90.9 bits (222), Expect = 2e-17
 Identities = 76/292 (26%), Positives = 133/292 (45%), Gaps = 26/292 (8%)

Query: 27  RKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVT----HGVIFDFGIVFALGATI 76
           R+++A + +RIGP       I Q + D  KL  K EN+     +  +F  G   A+ + +
Sbjct: 52  REISAGIQQRIGPEYAGPLGILQALADGTKLLFK-ENLRPSRGNTPLFSIGPSIAVISIL 110

Query: 77  LALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLA 135
           L+   IP  +  VL      + L   +  I  +G++ +   S N Y+ +G  RA    ++
Sbjct: 111 LSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSIS 170

Query: 136 IQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GWSIFHLPLLLAAIAYDIVLQAMFGK 192
            ++PL   +++++    + ST +IV AQ  +   GW+++  P  +  I + I   A   +
Sbjct: 171 YEIPLTLCVLSISLLSNSLSTVDIVEAQSKYGFWGWNLWRQP--IGFIIFLISSLAECER 228

Query: 193 EPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGG--------AV 244
            PFD+  A  E+  G   E+ G   G+  V   + L   +LF + ++LGG        ++
Sbjct: 229 LPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNISIPYISI 288

Query: 245 ITTFS-SPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKW 295
           +  F    I  T   + + L K    LFV+I      PR  +DQ     WK+
Sbjct: 289 LELFQRDQIFGTTIGIFITLAKTYLFLFVSIATRWTLPRLRMDQLLNLGWKF 340


>pir||B82822 NADH-ubiquinone oxidoreductase, NQO8 subunit XF0312 [imported] -
           Xylella fastidiosa (strain 9a5c)
           >gi|9105135|gb|AAF83123.1|AE003884_8 (AE003884)
           NADH-ubiquinone oxidoreductase, NQO8 subunit [Xylella
           fastidiosa]
           Length = 330
           
 Score = 90.5 bits (221), Expect = 2e-17
 Identities = 76/287 (26%), Positives = 127/287 (43%), Gaps = 19/287 (6%)

Query: 27  RKVTARVHRRIGPP-----IYQPIIDTIKLFGKK---ENVTHGVIFDFGIVFALGATILA 78
           RK+   +H R GP      ++Q   D  KL  K+    +  H  IF    +  L  +  A
Sbjct: 18  RKLIGWMHVRHGPMYVGMGLFQAFADVFKLLFKEVLYPSKAHKAIFVIAPLLTLAPSFAA 77

Query: 79  LMFIPLGSISVL-RAYGDLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLAIQ 137
              +P  +  VL  A   L+ +  +  + + GI+ A  +S + YA +GA R+   +++ +
Sbjct: 78  WAVVPFDTKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYE 137

Query: 138 VPLGFAIVALAEYYGTFSTYEIVMAQQVHG--WSIFHLPLLLAAIAYDIVLQAMFGKEPF 195
           + +GFA+V +    G+ +  +IVMAQ      +  F +PL    I Y +   A   + PF
Sbjct: 138 IAMGFALVGVMIAAGSLNLSQIVMAQAGSSGFFDWFLIPLFPLFIVYWVSGVAETNRSPF 197

Query: 196 DIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGGAV------ITTFS 249
           D++    EI  G MVE+ G    +  +     +   +   S  FLGG +      ++   
Sbjct: 198 DVVEGESEIVAGHMVEYSGSVFALFFLAEYANMILVSFLISIFFLGGWLSPIQGWVSGQV 257

Query: 250 SPILNTLATLG--VLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           SP+++ +   G   LL K L      I     FPR+  DQ  +  WK
Sbjct: 258 SPLIDWVWNGGWPWLLFKVLFFASAYIWFRASFPRYRYDQIMRLGWK 304


>emb|CAC12095.1| (AL445066) NADH dehydrogenase, subunit I related protein
           [Thermoplasma acidophilum]
           Length = 340
           
 Score = 90.1 bits (220), Expect = 3e-17
 Identities = 91/328 (27%), Positives = 145/328 (43%), Gaps = 34/328 (10%)

Query: 2   LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKK 55
           L  I   I  L++        + I RK  AR+  RIGP       + Q I D +KL GK 
Sbjct: 16  LAYIFETIFFLIFVVVALIAMIYIFRKYMARLQLRIGPNRVGKFGLLQLIADALKLVGK- 74

Query: 56  ENVTHGVIFDFG------IVFALGATILALMFIPLGSI----SVLRAYGDLILITFLLEI 105
           E++   +  DF       IVF     ++  + IP GS     S+   + ++ LI F   I
Sbjct: 75  ESIIPKLRDDFAYKAAPYIVFI--GLVVGFVLIPYGSFYWIGSLTITHSNVSLILFFGAI 132

Query: 106 PML--GIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFS----TYEI 159
            M+  G + A +SS N YA IGA R +   ++ +VP+  + V+L       S     +E 
Sbjct: 133 AMMPIGEVLAGISSHNKYAVIGAFRGIAKDVSFEVPMMISAVSLVMMDSALSRTPLNFET 192

Query: 160 VMAQQVHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGI 219
           +++ Q   + I      L    + + + A     PFD+  +  EI  G   E+ G   G+
Sbjct: 193 LVSTQFIPFGILQ---PLGLFVFMVAMIARSSYTPFDLSESDSEIVSGYSTEYSGMRFGL 249

Query: 220 LQVQHAIGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTI 279
             +     +F  +L  S ++LGG     F+ P  ++ A    LLIK L ++ ++ LI   
Sbjct: 250 FYMGMFGSIFLGSLVVSLLYLGG-----FNGP-YSSYAGFIYLLIKGLILVLISFLIWLS 303

Query: 280 FPRFTIDQAAKFYWKWPTIIAALGAILA 307
            PR  +D+   F WK    I+ +  I A
Sbjct: 304 MPRIRVDRFINFGWKILLPISIINLIWA 331


>gi|9653247 NADH dehydrogenase subunit 1 [Chondrus crispus]
           >gi|1352537|sp|P48898|NU1M_CHOCR NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431891|pir||S59101 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - red
           alga (Chondrus crispus) mitochondrion
           >gi|1334495|emb|CAA87617.1| (Z47547) NADH dehydrogenase
           (ubiquinone), subunit 1 [Chondrus crispus]
           Length = 326
           
 Score = 89.7 bits (219), Expect = 4e-17
 Identities = 88/307 (28%), Positives = 144/307 (46%), Gaps = 23/307 (7%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           +L  I+  IL LL A  V +M +   RKV A + RR GP I       QP+ D +KLF K
Sbjct: 6   LLIKIITIILPLLVA--VAYMTLAE-RKVMAAIQRRKGPNIVGVFGLLQPLADGLKLFVK 62

Query: 55  KENVTHG---VIFDFGIVFALGATILALMFIPLGSISVLRAYGDL-ILITFLLEIPMLG- 109
           +  +      +IF    +      +++   IPLG   V   Y D+ I + ++L I  LG 
Sbjct: 63  ETILPSSANIIIFILAPILTFLLALVSWCVIPLGEGMV---YSDINIGVLYILAISSLGV 119

Query: 110 --IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
             I+ +  +S + YA +GA R+   +++ +V +G  ++ +    G+ +  EIV+AQQ   
Sbjct: 120 YGIITSGWASNSKYAFLGALRSAAQMVSYEVSIGLILINVLLCSGSLNFTEIVLAQQ-SI 178

Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
           W  F +PL    I + I + A   + PFD+  A  E+  G  VE+      +  +     
Sbjct: 179 W--FVIPLFPIFIMFYISILAETNRAPFDLPEAEAELVAGYNVEYSAMGFALFFLGEYAN 236

Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
           +       + +F GG  +  F+  IL  ++      +K   +LF  I I + FPR+  DQ
Sbjct: 237 MILMCSLTTILFFGG-WLPPFNLTILYWISPTVWFGLKTTFLLFGFIWIRSSFPRYRYDQ 295

Query: 288 AAKFYWK 294
             +  WK
Sbjct: 296 LMRLGWK 302


>pir||D75387 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 DR1498
           [similarity] - Deinococcus radiodurans (strain R1)
           >gi|6459260|gb|AAF11065.1|AE001994_1 (AE001994) NADH
           dehydrogenase I, H subunit [Deinococcus radiodurans]
           Length = 397
           
 Score = 89.7 bits (219), Expect = 4e-17
 Identities = 74/334 (22%), Positives = 148/334 (44%), Gaps = 32/334 (9%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFG 53
           +L  ++ A+L+ L A    F +M +I R++  R+  R GP       + QP+ D IK   
Sbjct: 8   LLITLLKAVLVAL-ALLTAFAYMTLIERRLLGRIQLRPGPNRVGPMGLLQPLADAIKSIF 66

Query: 54  KKE---NVTHGVIFDFGIVFALGATILALMFIPLGSIS--------VLRAYGDLILITFL 102
           K++    +   +++    + A+G  + A   IP G           V      ++ +  L
Sbjct: 67  KEDVTVTLADKLVYTLAPILAIGMALTAFGGIPAGPPGSLFGTDPWVYNLDAGILALLAL 126

Query: 103 LEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMA 162
             + + GI     +SG+ Y  +G+ R+   +++ ++ +G +++ L    G+ +  +IV  
Sbjct: 127 TSMGVYGIFLGGWASGSKYPMLGSLRSSAQMISYELGMGLSVLGLLMLVGSTNFLDIVEW 186

Query: 163 Q---QVHGWSIFHLPLLLAAIAYDIVLQAMFG---KEPFDIMIAPGEISLGPMVEFGGKY 216
           Q   + HGW I     L    A+ + + + F    + PFD+  A  E+  G + E+    
Sbjct: 187 QAGPRGHGWLI-----LFQVFAFALFMVSSFAEVNRTPFDLPEAEQELVAGYLTEYSSIK 241

Query: 217 LGILQVQHAIGLFAETLFFSNIFLGGAVITTFSSPILNTLAT--LGVLLIKQLAVLFVAI 274
             + Q+   + +   +   S +F GG    TF  P++  +++  L  L+ K    +F+ I
Sbjct: 242 WALFQMAEYVNIMTASALMSTLFFGGYRGPTFLEPLIPGISSWPLVWLIAKIAFFMFLFI 301

Query: 275 LISTIFPRFTIDQAAKFYWKWPTIIAALGAILAS 308
            +    PR   DQ  +  WK    +A +  ++ +
Sbjct: 302 WVRATLPRLRYDQLMRLGWKLTLPLALVNTLVVA 335


>gb|AAG19140.1| (AE005012) NADH dehydrogenase/oxidoreductase; NdhG4 [Halobacterium
           sp. NRC-1]
           Length = 314
           
 Score = 89.7 bits (219), Expect = 4e-17
 Identities = 79/305 (25%), Positives = 125/305 (40%), Gaps = 35/305 (11%)

Query: 27  RKVTARVHRRIGPPIYQP------IIDTIKLFGKKENVTHGV---IFDFGIVFALGATIL 77
           RK+TA    RI      P      ++D+++L  K+  +  GV    +D   +   G+ + 
Sbjct: 14  RKITAAFTDRISVNRVGPWGLGTIVVDSVRLLSKELVIPEGVDRPAYDLAPIVLAGSALF 73

Query: 78  ALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLAI 136
           A   IP+G+ I +      L+ +  +  I  LG++    +S N Y+ +G  RA+   +A 
Sbjct: 74  AFAVIPMGNGIQLADPEVGLVFVFAIASIASLGLIMGGYASNNKYSLLGGLRAVAQNIAY 133

Query: 137 QVPLGFAIVALAEYYGTFSTYEIVMAQQ-----------VHGWSIFHLPLLLAAIAYDIV 185
           ++PL     ++  + GT    EIV  QQ           +  W  F  P   A + + + 
Sbjct: 134 EIPLVLTAASVVLFTGTLQLSEIVAIQQNTTLATIAGVRIPAWFAFVNP--FAFVLFVVA 191

Query: 186 LQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGGAVI 245
             A  G+ PFD   AP EI  G   E+   Y  +  +            F +IFLGGA+I
Sbjct: 192 NLAEVGRNPFDTPEAPTEIVAGYQTEYSSAYFVLFYLGE----------FIHIFLGGAII 241

Query: 246 TT--FSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPTIIAALG 303
            T     P    L       IK  AV F      +  PR  IDQ     WK   +++   
Sbjct: 242 ATLFLGGPGGPFLPGFVWFTIKIWAVYFFTQWCRSAIPRVRIDQLIGIGWKGLLVLSFAN 301

Query: 304 AILAS 308
            +L +
Sbjct: 302 LVLTA 306


>gi|11497479 NADH dehydrogenase (ubiquinone), subunit 1 [Prototheca wickerhamii]
           >gi|7431941|pir||T11938 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - Prototheca wickerhamii
           mitochondrion >gi|467870|gb|AAD12657.1| (U02970) NADH
           dehydrogenase (ubiquinone), subunit 1 [Prototheca
           wickerhamii]
           Length = 328
           
 Score = 88.5 bits (216), Expect = 9e-17
 Identities = 82/308 (26%), Positives = 138/308 (44%), Gaps = 21/308 (6%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFG 53
           ++  IV  IL L     +   F+ +  RKV A + RR GP       I+QPI D +KL  
Sbjct: 4   LISSIVLKILALTVPLILSVAFLVLAERKVLASMQRRKGPNVVGIYGIFQPIADGLKLIV 63

Query: 54  KKENVTHG---VIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLG 109
           K+  +      VIF F  V     + +A   IP G  + +   +  L+ +  +  + + G
Sbjct: 64  KEPVLPSSANLVIFLFAPVLTFLLSQVAWASIPFGEGLVIADIHAGLLYVFAISSLGIYG 123

Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
           ++ A  SS + YA +G+ R+   +++ +V +G  ++ +    G+ +  EIV+AQ    + 
Sbjct: 124 VITAGWSSNSKYAFLGSCRSAAQMVSYEVSIGLILITVCICAGSLNLTEIVIAQTQIWYC 183

Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
           I   PLL   I + I   A   + PFD+  A  E+  G  VE+      +      +G +
Sbjct: 184 IPLFPLL---IMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALF----FLGEY 236

Query: 230 AETLFFSN---IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
           A  +  S+   IF  G  +  F   I   +  +    +K +  LF  I +   FPR+  D
Sbjct: 237 ANMIVMSSLCCIFFLGGWLPPFDFAIFYWIPGVFWFSLKVVFFLFAFIWVRAAFPRYRYD 296

Query: 287 QAAKFYWK 294
           Q  +  WK
Sbjct: 297 QLMRLGWK 304


>pir||A71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO8 -
           Helicobacter pylori (strain J99)
           >gi|4155778|gb|AAD06754.1| (AE001545) NADH
           oxidoreductase I [Helicobacter pylori J99]
           Length = 329
           
 Score = 88.2 bits (215), Expect = 1e-16
 Identities = 90/322 (27%), Positives = 139/322 (42%), Gaps = 31/322 (9%)

Query: 9   ILILLYATFVGFMFMGIIRKVTARVHRRIGP------PIYQPIIDTIKLFGKKENVTHGV 62
           IL+ +++   GF    I RKV A   RR+GP       + Q   D IKLF K++ +  G 
Sbjct: 14  ILVAVFSALGGFATY-IERKVLAYFQRRLGPCYVGPFGLLQVAADGIKLFTKEDIIPQGA 72

Query: 63  ---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILIT-------FLLEIPMLGI-- 110
              IF    + A+ +  +++  IP      L  Y    LI+       F L +   GI  
Sbjct: 73  NKFIFTLAPIIAMVSAFVSMAPIPFFPNFTLFGYEIKPLISDINIGFLFFLAVGSAGIYA 132

Query: 111 -MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ--VHG 167
            + A ++S N Y+ IG+ RA + LL+ +V     I+A     G+ S  EI   Q      
Sbjct: 133 PILAGLASNNKYSLIGSARATIQLLSFEVVSTLTILAPLMVVGSLSLVEINHYQSGGFLD 192

Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
           W +F  P  LA + + I   A   + PFD++    EI  G   E+ G   G+  +     
Sbjct: 193 WLVFKQP--LAFVLFLIASYAELNRTPFDLLEHEAEIVAGYCTEYSGLKWGMFFLAEYAH 250

Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
           LFA +   S +F GG     F   I   +A    +LIK    +F+++ +   +P    DQ
Sbjct: 251 LFAFSFVISIVFFGGFNAWGF---IPGGIA----ILIKAGFFVFLSMWVRATYPHVRPDQ 303

Query: 288 AAKFYWKWPTIIAALGAILASL 309
                WK    +A L  +L  +
Sbjct: 304 LMNMCWKIMLPLALLNIVLTGI 325


>sp|P06254|NU1C_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
           Length = 367
           
 Score = 87.8 bits (214), Expect = 2e-16
 Identities = 81/321 (25%), Positives = 140/321 (43%), Gaps = 40/321 (12%)

Query: 9   ILILLYATFVGFM-FMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHG 61
           IL L+    +G +  + + R+++A + +RIGP       I Q + D  KL   KEN+   
Sbjct: 33  ILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLL-LKENLIPS 91

Query: 62  V----IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITF----LLEIPMLGIMFA 113
                +F  G   A+ +  L+   IP G   VL    DL +  F    +  I  +G++ +
Sbjct: 92  TGDTRLFSIGPSIAVISIFLSYSVIPFGDHLVL---ADLSIGVFFWIAISSIAPVGLLMS 148

Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALA----EYYGTFSTYEIVMAQQVHG-- 167
              S N Y+ +G  RA    ++ ++PL   +++++        + ST +IV AQ  +G  
Sbjct: 149 GYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLRVIRLSNSLSTVDIVEAQSKYGFW 208

Query: 168 -WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAI 226
            W+++  P+    I + I   A   + PFD+  A  E+  G   E+ G   G+  V   +
Sbjct: 209 GWNLWRQPI--GFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFTVASYL 266

Query: 227 GLFAETLFFSNIFLGGAVIT------------TFSSPILNTLATLGVLLIKQLAVLFVAI 274
            L   +LF + ++LGG  ++                 +  TL  + + L K    LF+ I
Sbjct: 267 NLLVSSLFVTVLYLGGWNLSIPYIFVPELFGINKRGKVFGTLIGIFITLAKTYLFLFIPI 326

Query: 275 LISTIFPRFTIDQAAKFYWKW 295
                 PR  +DQ     WK+
Sbjct: 327 ATRWTLPRLRMDQLLNLGWKF 347


>pir||C64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO8 -
           Helicobacter pylori (strain 26695)
           >gi|2314432|gb|AAD08311.1| (AE000631) NADH-ubiquinone
           oxidoreductase, NQO8 subunit (NQO8) [Helicobacter pylori
           26695]
           Length = 329
           
 Score = 87.8 bits (214), Expect = 2e-16
 Identities = 90/322 (27%), Positives = 139/322 (42%), Gaps = 31/322 (9%)

Query: 9   ILILLYATFVGFMFMGIIRKVTARVHRRIGP------PIYQPIIDTIKLFGKKENVTHGV 62
           IL+ +++   GF    I RKV A   RR+GP       + Q   D IKLF K++ +  G 
Sbjct: 14  ILVAVFSALGGFATY-IERKVLAYFQRRLGPCYVGPFGLLQVAADGIKLFTKEDIIPQGA 72

Query: 63  ---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILIT-------FLLEIPMLGI-- 110
              IF    + A+ +  +++  IP      L  Y    LI+       F L +   GI  
Sbjct: 73  NKFIFTLAPIIAMVSAFVSMAPIPFFPNFTLFGYEIKPLISDINIGFLFFLAVGSAGIYA 132

Query: 111 -MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ--VHG 167
            + A ++S N Y+ IG+ RA + LL+ +V     I+A     G+ S  EI   Q      
Sbjct: 133 PILAGLASNNKYSLIGSARATIQLLSFEVVSTLTILAPLMVVGSLSLVEINHYQSGGFLD 192

Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
           W +F  P  LA + + I   A   + PFD++    EI  G   E+ G   G+  +     
Sbjct: 193 WLVFKQP--LAFVLFLIASYAELNRTPFDLLEHEAEIVAGYCTEYSGLKWGMFFLAEYAH 250

Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
           LFA +   S +F GG     F   I   +A    +LIK    +F+++ +   +P    DQ
Sbjct: 251 LFAFSFVISIVFFGGFNAWGF---IPGGIA----ILIKAGFFVFLSMWVRATYPHVRPDQ 303

Query: 288 AAKFYWKWPTIIAALGAILASL 309
                WK    +A L  +L  +
Sbjct: 304 LMDMCWKIMLPLALLNIVLTGI 325


>gi|11465632 NADH dehydrogenase subunit 1 [Porphyra purpurea]
           >gi|7431949|pir||T11227 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - red alga (Porphyra purpurea)
           mitochondrion >gi|4106939|gb|AAD03106.1| (AF114794) NADH
           dehydrogenase subunit 1 [Porphyra purpurea]
           Length = 328
           
 Score = 87.8 bits (214), Expect = 2e-16
 Identities = 85/310 (27%), Positives = 142/310 (45%), Gaps = 29/310 (9%)

Query: 4   VIVNAILIL--LYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           +I+N I I+  +    +   +M +  RKV A + RR GP +       QP+ D +KLF K
Sbjct: 5   IIINIIKIITIIIPLLIAVAYMTLAERKVMAAMQRRKGPNVVGIFGLLQPLADGLKLFSK 64

Query: 55  KENVTHGV---IFDFGIVFALGATILALMFIPLGSISVLRAYGDL-ILITFLLEIPMLG- 109
           +  +       IF    V      +LA   +PL    V   + DL + + ++L I  LG 
Sbjct: 65  ETVLPSSANISIFLAAPVLTFLLAMLAWCVLPLDEGKV---FSDLNVGVLYILAISSLGV 121

Query: 110 --IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
             I+ A  SS + YA +GA R+   +++ +V +G  ++ +    GT +  +IV+AQQ + 
Sbjct: 122 YGIITAGWSSNSKYAFLGALRSAAQMVSYEVSIGLILINVLLCAGTLNLTQIVLAQQ-NI 180

Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
           W I  +PL    I + I + A   + PFD+  A  E+  G  VE+      +      +G
Sbjct: 181 WYI--VPLFPVFIMFYISILAETNRAPFDLPEAEAELVAGYNVEYSAMGFALF----FLG 234

Query: 228 LFAETLF---FSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFT 284
            +A  +     + IF  G  +  F+ P    +  +    +K   +LF  I +   FPR+ 
Sbjct: 235 EYANMILMCSLTTIFFFGGWLPLFNIPPFYWIPPVIWFGLKTTLLLFGFIWVRAAFPRYR 294

Query: 285 IDQAAKFYWK 294
            DQ  +  WK
Sbjct: 295 YDQLMRLGWK 304


>sp|P48899|NU1M_CYACA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|2147754|pir||S62765 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - red
           alga (Cyanidium caldarium) mitochondrion
           >gi|758181|emb|CAA88775.1| (Z48930) NADH dehydrogenase
           subunit 1 [Cyanidium caldarium]
           Length = 344
           
 Score = 87.0 bits (212), Expect = 3e-16
 Identities = 81/310 (26%), Positives = 139/310 (44%), Gaps = 23/310 (7%)

Query: 4   VIVNAILILLYATFVGFMFMGII---------RKVTARVHRRIGPPIY------QPIIDT 48
           +I N I+ILL+   + ++   II         RK+   + +R GP I       QPI D 
Sbjct: 14  LIFNFIIILLFIKSLSYIIPLIIAIAYLTLIERKIIGSIQKRKGPNIVGIFGLLQPIADG 73

Query: 49  IKLFGKKENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDL-ILITFLLEIPM 107
           +KL  K+ ++ +       I+  +    LAL    +   + +  Y +L I I +LL I  
Sbjct: 74  LKLLLKETSLPNSANIFIFIIAPILTFFLALCAWAIMPFNEINFYSNLNIGILYLLAISS 133

Query: 108 LG---IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ 164
           LG   I+ +  +S + YA +G  R+   +++ +V +G  I+ +    GT +  EIV+AQQ
Sbjct: 134 LGVYGIIISGWASNSKYAFLGGLRSAAQIISYEVSIGLIIINVLLCSGTLNLKEIVLAQQ 193

Query: 165 VHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQH 224
            + W IF  PL    + + I   A   + PFD+  A  E+  G  VE+      +  +  
Sbjct: 194 -NIWYIF--PLFPLFLMFFISSLAETNRSPFDLPEAEAELVAGYNVEYSAMGFALFFLGE 250

Query: 225 AIGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFT 284
              +   +   + +FL G  +  F   + N +        K + +L + I +   FPR+ 
Sbjct: 251 YTNIILISAVSTILFLAG-WLPPFDIFLFNWIPNSIWFGFKTIIILVLFIWVRAAFPRYR 309

Query: 285 IDQAAKFYWK 294
            DQ  +  WK
Sbjct: 310 YDQLIQLGWK 319


>gi|8954370 NADH dehydrogenase subunit 1 [Cyanidioschyzon merolae]
           >gi|7431915|pir||C58931 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - Cyanidioschyzon merolae
           mitochondrion >gi|4115783|dbj|BAA36521.1| (D89861)
           NADH-ubiquinone oxidoreductase chain 1 [Cyanidioschyzon
           merolae]
           Length = 330
           
 Score = 87.0 bits (212), Expect = 3e-16
 Identities = 77/305 (25%), Positives = 138/305 (45%), Gaps = 19/305 (6%)

Query: 4   VIVNAI--LILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           VI+N I  ++++    V   ++ +  RK+   + +R GP +       QP+ D +KLF K
Sbjct: 6   VIINLIKGILIIVPLLVSVAYLILAERKIIGAIQKRKGPNVVGMFGLLQPLADGLKLFVK 65

Query: 55  KE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGI 110
           +    N  +  I+    +     ++ +   IP     VL      L+ +  +  + + GI
Sbjct: 66  ETILPNSANIFIYIIAPIITFFLSLASWAVIPFDEGFVLTDLSMGLLYLLAISSLAVYGI 125

Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
           + A  SS + YA +G  R+   +++ +V +GF I+ +    G+ +  EIV+AQQ    SI
Sbjct: 126 IIAGWSSNSKYAFLGGLRSAAQIISYEVSIGFIIINVLLCAGSLNLSEIVLAQQ----SI 181

Query: 171 FH-LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
           ++ +PL    + + I   A   + PFD+  A  E+  G  VE+      +  +     + 
Sbjct: 182 WYIIPLFPLFLLFFISSLAETNRAPFDLPEAEAELVAGYNVEYSAITFALFFLGEYTNII 241

Query: 230 AETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAA 289
             + F + IF GG  +  F+  IL  +       IK   +LF  + +   FPR+  DQ  
Sbjct: 242 LISSFITTIFFGG-WLPPFNMIILQWIPGTIWFGIKVTLLLFAFVWVRAAFPRYRYDQLI 300

Query: 290 KFYWK 294
              WK
Sbjct: 301 YLSWK 305


>gi|9695396 NADH dehydrogenase subunit 1 [Phytophthora infestans]
           >gi|6692648|gb|AAF24791.1|U17009_24 (U17009) NADH
           dehydrogenase subunit 1 [Phytophthora infestans]
           Length = 326
           
 Score = 87.0 bits (212), Expect = 3e-16
 Identities = 82/311 (26%), Positives = 141/311 (44%), Gaps = 26/311 (8%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           M+  I+  ++++L        F  + RKV A + RR GP +       QP+ D +KLF K
Sbjct: 1   MIYTILKFLILVLPLLIAVAYFTLVERKVLASIQRRRGPNVVGTFGLLQPLADGLKLFVK 60

Query: 55  KENVTHG---VIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLG-- 109
           +  +      ++F F  + A   ++L+   IPLG           I I +LL I  LG  
Sbjct: 61  ETILPSNADVILFIFAPILAFFLSLLSWTVIPLGFGMFFTELN--IGILYLLAISSLGVY 118

Query: 110 -IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
            I+    SS + Y+ +GA R+   +++ ++ +GF+I+++     + +   IV+AQ+   W
Sbjct: 119 GIIIGGWSSNSKYSFLGALRSTAQMISYELTIGFSILSVIICAKSLNLISIVLAQKT-VW 177

Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
             F  PL    + + I   A   + PFD+  A  E+  G  VE+      +      +G 
Sbjct: 178 YCF--PLFPIFLIFFISCLAETNRHPFDLPEAEAELVSGYNVEYSAMGFALF----FLGE 231

Query: 229 FAETLFFSN----IFLGGAVIT-TFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRF 283
           +A  L  S+    +FLGG +    FS   +N L       IK    + + ++   + PR+
Sbjct: 232 YANMLLMSSLTTILFLGGWLAPFPFSIKFINFLPGSFWFSIKVCFFVVLFVVARAVLPRY 291

Query: 284 TIDQAAKFYWK 294
             DQ  +  WK
Sbjct: 292 RYDQLMRLGWK 302


>emb|CAA69811.2| (Y08502) NADH dehydrogenase subunit 1 [Arabidopsis thaliana]
           Length = 325
           
 Score = 87.0 bits (212), Expect = 3e-16
 Identities = 84/301 (27%), Positives = 135/301 (43%), Gaps = 23/301 (7%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NV 58
           IL ++    +G  F+ +  RKV A V RR GP +       QP+ D +KL  K+    + 
Sbjct: 9   ILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSS 68

Query: 59  THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAMSS 117
            +  +F    V     +++A   +P     VL      +L  F +  + + GI+ A  SS
Sbjct: 69  ANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSS 128

Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
            + YA +GA R+   +++ +V +G  ++ +    G+ +  EIVMAQ+   W  F +PL  
Sbjct: 129 NSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQK-QIW--FGIPLFP 185

Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
             + + I   A   + PFD+  A  E+  G  VE    Y  +      +G +A  +  S 
Sbjct: 186 VLVMFFISCLAETNRAPFDLPEAEAELVAGYNVE----YSSMGSALFFLGEYANMILMSG 241

Query: 238 I----FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
           +    FLGG  +     PI   +  L    IK L  LF+ I +   FPR+  DQ     W
Sbjct: 242 LCTLFFLGG-WLPILDLPIFKKIPGLIWFSIKVLFFLFLYIWVRAAFPRYRYDQLMGLGW 300

Query: 294 K 294
           K
Sbjct: 301 K 301


>sp|P57258|NUOH_BUCAI NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
           H) >gi|10038843|dbj|BAB12878.1| (AP001118) NADH
           dehydrogenase I chain H [Buchnera sp. APS]
           Length = 322
           
 Score = 86.6 bits (211), Expect = 3e-16
 Identities = 78/297 (26%), Positives = 131/297 (43%), Gaps = 21/297 (7%)

Query: 9   ILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENV---T 59
           I ILL   F   M   + R++ A    R GP         Q   D IK+  K++ +   +
Sbjct: 19  IFILLLIVFSSAMLSIVERRLLAVFQNRYGPNRVGWMGSLQLCADMIKILFKEDWIPPFS 78

Query: 60  HGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLL-EIPMLGIMFAAMSSG 118
              IF    V A  + +  +  IP  S  V+      IL   ++  + +  I+FA  SS 
Sbjct: 79  RKFIFVLSPVIAFTSLLCVIPIIPFTSHFVIIDLNIGILFFLMMASLSVYAILFAGWSSN 138

Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
           N YA +GA RA +  L+ +V LG +++ +    G+F   +IV +Q+ + W++F  P    
Sbjct: 139 NKYALLGAMRACVQTLSYEVFLGLSLMGVVAQSGSFKISDIVNSQK-YIWNVF--PQFFG 195

Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
            + + I   A+  + PFD   +  E++ G  +E+ G   G+  +   I +   +     +
Sbjct: 196 FLTFLIAGLAVCHRHPFDQPESEQELADGYHIEYSGMKFGLFFIGEYISIITVSSLIVTL 255

Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKW 295
           F GG +     S I          ++K +  +F+ ILI    PR   DQ   F WK+
Sbjct: 256 FFGGWLGPWIPSCIW--------FILKIIFFIFLFILIRAALPRPRYDQVLLFGWKF 304


>pir||B40358 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - garden
           petunia mitochondrion
           Length = 325
           
 Score = 86.2 bits (210), Expect = 5e-16
 Identities = 78/297 (26%), Positives = 133/297 (44%), Gaps = 15/297 (5%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NV 58
           IL ++    +G  F+ +  RKV A V RR GP +       QP+ D +KL  K+    + 
Sbjct: 9   ILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSS 68

Query: 59  THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAMSS 117
            +  +F    V     +++A   +P     VL      +L  F +  + + GI+ A  SS
Sbjct: 69  ANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSS 128

Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
            + YA +GA R+   +++ +V +G  ++ +    G+ +  EIVMAQ+   W  F +PL  
Sbjct: 129 NSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQK-QIW--FGIPLFP 185

Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
             + + I   A   + PFD+  A  E+  G  VE+      +  +     +   +   ++
Sbjct: 186 VLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSGLCTS 245

Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           +FLGG  +     PI   +       IK +  LF+ I +   FPR+  DQ     WK
Sbjct: 246 LFLGG-WLPILDLPIFKKIPGSIWFSIKVIFFLFLYIWVRAAFPRYRYDQLMGLGWK 301


>sp|Q60010|NUOH_SALTY NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
           H) (NUO8) >gi|897636|gb|AAC37140.1| (L42521) NADH
           dehydrogenase subunit [Salmonella typhimurium]
           Length = 325
           
 Score = 86.2 bits (210), Expect = 5e-16
 Identities = 74/304 (24%), Positives = 133/304 (43%), Gaps = 22/304 (7%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
           +L ++   +++L+  T   FM  G  R++      R GP         Q + D IK+F K
Sbjct: 12  LLSILKAVVILLVVVTCGAFMSFGE-RRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFK 70

Query: 55  KENV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGI 110
           ++ +   +  VIF    + A  + +L+   +P+    V+      I    ++  + +  +
Sbjct: 71  EDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGIWFFLMMAGLAVYAV 130

Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
           +FA  SS N Y+ +GA RA    ++ +V LG +++ +    G+F+  +IV   Q H W++
Sbjct: 131 LFAGWSSNNKYSLLGAMRASAQTVSYEVFLGLSLMGVVAQAGSFNMTDIV-NNQAHLWNV 189

Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
             +P     + + I   A+  + PFD      E++ G  +E+ G   G+  V   IG+  
Sbjct: 190 --IPQFFGFVTFAIAGVAVCHRHPFDHPETEQELADGYHIEYSGMKFGLFFVGEYIGIVT 247

Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
            +     +F GG     +  P L          +K    + + ILI    PR   DQ   
Sbjct: 248 VSALMVTLFFGG-----WHGPFLPPFVWFA---LKTAFFMMMFILIRASLPRPRYDQVMS 299

Query: 291 FYWK 294
           F WK
Sbjct: 300 FGWK 303


>sp|Q9ZCF7|NUOH_RICPR NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
           H) >gi|7431892|pir||F71640 NADH dehydrogenase
           (ubiquinone) (EC 1.6.5.3) I chain H RP796 - Rickettsia
           prowazekii >gi|3861323|emb|CAA15222.1| (AJ235273) NADH
           DEHYDROGENASE I CHAIN H (nuoH) [Rickettsia prowazekii]
           Length = 339
           
 Score = 85.8 bits (209), Expect = 6e-16
 Identities = 74/313 (23%), Positives = 138/313 (43%), Gaps = 9/313 (2%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGP-PIYQPIIDTIKLFGKKENV- 58
           ++ + +  IL + Y T+     +G+++    R    +GP  + QPI D +KL  K+  + 
Sbjct: 19  VVAITIPLILCVAYLTYAERRVIGLMQ--LRRGPNVVGPFGLLQPIADAVKLLFKEPIIP 76

Query: 59  --THGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAM 115
                ++F    +     +++    IP  S  VL      ++ I  +  + + GI+ A  
Sbjct: 77  TDADKILFILAPIITFVLSLIGWAVIPFSSGVVLADINVGVLYILAISSLSVYGIIIAGW 136

Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
           +S + YA +GA R+   +++ +V +G  I+ +    GT +   I+ AQ+   W I  L L
Sbjct: 137 ASNSKYAFLGAIRSSAQMISYEVSMGLVIITVLLTTGTLNLSGIIEAQKTLPWWI-DLML 195

Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
           L  +I + I + A   + PFD+  A  E+  G  VE+      +  +     +   +   
Sbjct: 196 LPMSIVFFISVLAETNRLPFDLPEAESELVAGYNVEYSSMGFALFFLGEYANMILVSAMT 255

Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKW 295
           + +FLGG  +  F+   L+ +      + K   +LF  + I    PR+  DQ  +  WK 
Sbjct: 256 TTLFLGG-YLPPFNLSFLDCIPGFFWFVFKVGFLLFCFLWIRATLPRYRYDQLMRLGWKV 314

Query: 296 PTIIAALGAILAS 308
                  G +L S
Sbjct: 315 FLPFTLFGVVLVS 327


>emb|CAC14152.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
           [Sinorhizobium meliloti]
           Length = 328
           
 Score = 85.8 bits (209), Expect = 6e-16
 Identities = 66/310 (21%), Positives = 135/310 (43%), Gaps = 28/310 (9%)

Query: 4   VIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKEN 57
           ++    L++     +      + RK+   + +R+GP       + QP+ D IKL  K+++
Sbjct: 10  IVFKVALVIAILLLLPLPLTWLERKIAGHMQQRMGPMRVGWHGLLQPVADGIKLLTKEDH 69

Query: 58  V---THGVIFDFGIVFALGATILALMFIPLG-SISVL---------RAYGDLILITFLLE 104
           +       +F    + AL    +    IP G S+SVL              L+ +  ++ 
Sbjct: 70  IPAEADRFLFKLAPILALAPPFVVFAAIPFGESVSVLGNEITLYISNLNVALLFVFAVIG 129

Query: 105 IPMLGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ 164
           + + G++F   ++ + YA +G+ R    +++ ++P+GFA++ +     + S  +IV A Q
Sbjct: 130 LEVYGVIFGGWAANSKYAVLGSLRTCAQMISYEIPMGFAVIGVVMLAQSMSLLDIVRA-Q 188

Query: 165 VHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQH 224
              W++ + P  +    + +   A   + PFD+  A G++  G   E+ G    +  V  
Sbjct: 189 TDVWNVVYQP--IGFFVFFVAGLAEAQRIPFDLAEAEGDLGAGFHTEYSGIRFALFMVSE 246

Query: 225 AIGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFT 284
            + +   ++    +F GG       + +L  L  L   L+K    +++ +     FPR+ 
Sbjct: 247 YVVMVLVSVLTVILFFGG------WNGVLIPLPPLLWFLLKVAFFVYLFMWFRFTFPRYR 300

Query: 285 IDQAAKFYWK 294
            DQ     WK
Sbjct: 301 YDQLMAIGWK 310


>pir||S49576 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - Arabidopsis
           thaliana mitochondrion >gi|572521|emb|CAA57940.1|
           (X82618) mitochondrial NADH dehydrogenase [Arabidopsis
           thaliana]
           Length = 325
           
 Score = 85.4 bits (208), Expect = 8e-16
 Identities = 82/301 (27%), Positives = 134/301 (44%), Gaps = 23/301 (7%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NV 58
           IL ++    +G  F+ +  RKV A V RR GP +       QP+ D +KL  K+    + 
Sbjct: 9   ILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSS 68

Query: 59  THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAMSS 117
            +  +F    V     +++A   +P     VL      +L  F +  + + GI+ A  SS
Sbjct: 69  ANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSS 128

Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
            + YA +GA R+   +++ +V +G  ++ +    G+ +  EIVMAQ+   W  F +PL  
Sbjct: 129 NSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQK-QIW--FGIPLFP 185

Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
             + + I   A   + PFD+  A  E+  G  VE+      +      +G +A  +  S 
Sbjct: 186 VLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALF----FLGEYANMILMSG 241

Query: 238 I----FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
           +    FLGG  +     PI   +       IK L  LF+ I +   FPR+  DQ     W
Sbjct: 242 LCTLFFLGG-WLPILDLPIFKKIPGSIWFSIKVLFFLFLYIWVRAAFPRYRYDQLMGLGW 300

Query: 294 K 294
           K
Sbjct: 301 K 301


>pir||E70419 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoH2 -
           Aquifex aeolicus >gi|2983789|gb|AAC07347.1| (AE000737)
           NADH dehydrogenase I chain H [Aquifex aeolicus]
           Length = 259
           
 Score = 85.0 bits (207), Expect = 1e-15
 Identities = 65/239 (27%), Positives = 108/239 (44%), Gaps = 22/239 (9%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           +L  ++  ++ILL A  +G     + RKV A + RR GP +       QP+ + +KL  K
Sbjct: 8   LLFAVIKIVVILLIALGIGAFLTWVERKVAAHIQRRPGPMVVGWHGLLQPLANGLKLLTK 67

Query: 55  KE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG----------DLILITF 101
           ++         ++   I+ AL    L    +P G    +  Y            L+L+  
Sbjct: 68  EDLFPRYGDKFLYHLAIILALVPATLVFSVVPFGPEFEVFGYKVKPILSDVNVGLLLVFA 127

Query: 102 LLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVM 161
           L  + +  +  A  +S + Y  I + R    L++ +V + FA++      GT STYEIV 
Sbjct: 128 LGSMAVYAVALAGWASNSKYPLIASMRKAGVLVSYEVVITFAVMGPIMLAGTLSTYEIVQ 187

Query: 162 AQ-QVHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGI 219
            Q + + W I+  P  +A + Y     A  G+ PFD+  A  E+  G  VE+GG   G+
Sbjct: 188 KQIEQNLWYIWVQP--IAFVVYMFAALAEMGRVPFDVQEAEAELVTGFTVEYGGMKFGL 244


>gb|AAF66631.1| (AF143001) NADH dehydrogenase subunit 1 [Rhinolophus ferrumequinum]
           Length = 318
           
 Score = 85.0 bits (207), Expect = 1e-15
 Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 18/295 (6%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-NVTH 60
           +L+L+    +   F+ +I RKV   +  R GP +       QPI D +KLF K+      
Sbjct: 6   LLLLIVPILLAVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPIADAVKLFTKEPLRPLT 65

Query: 61  GVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGN 119
             I  F I   L  T+   M+ PL     L      ++ +  +  + +  I+++  +S +
Sbjct: 66  SSISMFIIAPVLALTLALTMWTPLPMPHPLINLNLGVLFMLAMSSLAVYSILWSGWASNS 125

Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
            YA IGA RA+   ++ +V L   ++++    G+FS    ++ Q+ H W IF  P    A
Sbjct: 126 KYALIGALRAVAQTISYEVTLAIILLSVLLLSGSFSLSNPIITQE-HMWLIF--PSWPLA 182

Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
           + + I   A   + PFD+     E+  G  VE+ G    +  +     +    +F + +F
Sbjct: 183 MMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNIFTTTLF 242

Query: 240 LGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           LG      + +PI+  L T   +L K L +    + I   +PRF  DQ     WK
Sbjct: 243 LG-----AYHNPIMPELYTTNFVL-KSLLLTISGLWIRASYPRFRYDQLMHLLWK 291


>gi|11467140 nad1 [Marchantia polymorpha] >gi|462756|sp|P26845|NU1M_MARPO
           NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1
           >gi|282795|pir||S25993 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - liverwort (Marchantia polymorpha)
           mitochondrion >gi|404357|gb|AAB27398.1| NADH
           dehydrogenase subunit 1=nad1 gene product [Marchantia
           polymorpha=liverworts, Peptide Mitochondrial, 328 aa]
           >gi|786224|gb|AAC09438.1| (M68929) nad1 [Marchantia
           polymorpha]
           Length = 328
           
 Score = 84.7 bits (206), Expect = 1e-15
 Identities = 79/301 (26%), Positives = 131/301 (43%), Gaps = 15/301 (4%)

Query: 5   IVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKEN 57
           +V  IL ++    +G  F+ +  RKV A + RR GP +       QP+ D +KL  K+  
Sbjct: 8   LVAKILGIIIPLLLGVAFLVLAERKVMASMQRRKGPNVVGILGLLQPLADGLKLMIKEPI 67

Query: 58  VTHGV---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFA 113
           +       IF    V      + A   IP     V       +L  F +  + + GI+ A
Sbjct: 68  LPSSANIFIFLMAPVLTFTLALCAWAVIPFDYGMVFSDLNIGVLYLFAISSLGVYGIITA 127

Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHL 173
             +S + YA +GA R+   +++ +V +G  ++++    G+ +  EIV+A Q   W +F  
Sbjct: 128 GWASNSKYAFLGALRSAAQMVSYEVSIGLLLISVILCAGSCNFSEIVLA-QTRIWFVF-- 184

Query: 174 PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETL 233
           PL    + + I   A   + PFD+  A  E+  G  VE+      +  +     +   + 
Sbjct: 185 PLFPVFLMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSS 244

Query: 234 FFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
             + +FLGG  +     PI   +       IK L  LFV I +   FPR+  DQ  +  W
Sbjct: 245 LCTLLFLGG-WLPILDIPIFQVIPGSIWFSIKVLFFLFVYIWVRAAFPRYRYDQLMRLGW 303

Query: 294 K 294
           K
Sbjct: 304 K 304


>sp|P31839|NU1M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|66136|pir||DNOBU1 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
           evening primrose mitochondrion
           Length = 331
           
 Score = 84.3 bits (205), Expect = 2e-15
 Identities = 78/297 (26%), Positives = 132/297 (44%), Gaps = 15/297 (5%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NV 58
           IL ++    +G  F+ +  RKV A V RR GP +       QP+ D +KL  K+    + 
Sbjct: 15  ILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSS 74

Query: 59  THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAMSS 117
            +  +F    V     +++A   +P     VL      +L  F +  + + GI+ A  SS
Sbjct: 75  ANFSLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSS 134

Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
            + YA +GA R+   +++ +V +G  ++ +    G+ +  EIVMAQ+   W  F +PL  
Sbjct: 135 NSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQK-QIW--FGIPLFP 191

Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
             + + I   A   + PFD+  A  E+  G  VE+      +  +     +   +   + 
Sbjct: 192 VLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSGLCTL 251

Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           +FLGG  +     PI   +       IK +  LF+ I +   FPR+  DQ     WK
Sbjct: 252 LFLGG-WLPILDLPIFKKIPGSIWFSIKVIFFLFLYIWVRAAFPRYRYDQLMGLGWK 307


>gb|AAC69445.1| (AF009349) NADH dehydrogenase subunit 1 [Cucumaria miniata]
           Length = 323
           
 Score = 84.3 bits (205), Expect = 2e-15
 Identities = 80/303 (26%), Positives = 135/303 (44%), Gaps = 24/303 (7%)

Query: 2   LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK- 54
           ++ ++  I ILL   F+      + RKV   +  R GP I       QP  D +KLF K 
Sbjct: 8   IQALIYIIPILLSVAFLTL----VERKVLGYMQFRKGPNIVGPYGILQPFADALKLFVKE 63

Query: 55  --KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMF 112
             K +     +F F     L   I     +PL + S L     L+LI  L  + +  ++ 
Sbjct: 64  TLKPSTASPFLFFFSPFLFLTLAITLWSLVPLPNTS-LNINLSLLLILGLSSLSVYSLIG 122

Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFH 172
           A  +S + Y+ IG  RA+   ++ ++ +G  I+++  +  +FS  +I   Q  + W I  
Sbjct: 123 AGWASNSKYSLIGGIRAIAQTISYEISMGLIILSILLWVNSFSLKDINEIQ--NNWWII- 179

Query: 173 LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAET 232
           LP     I + +   A   + PFD+     E+  G  VE+ G    +  +     +    
Sbjct: 180 LPYFSLFIMWIVSTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMN 239

Query: 233 LFFSNIFLGGAVITTFS-SPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
           L    IFLGG+  + FS +PI+++L     + +K L ++F  + +   +PRF  DQ    
Sbjct: 240 LLSVLIFLGGS--SPFSETPIISSL----TIALKTLLLVFWFLWVRASYPRFRYDQLMHL 293

Query: 292 YWK 294
            WK
Sbjct: 294 TWK 296


>gi|7524983 NADH dehydrogenase subunit 1 [Dictyostelium discoideum]
           >gi|3122447|sp|Q37313|NU1M_DICDI NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|2130173|pir||S68157 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - slime
           mold (Dictyostelium discoideum) mitochondrion
           >gi|699593|dbj|BAA03935.1| (D16466) NADH dehydrogenase
           subunit 1 [Dictyostelium discoideum]
           >gi|4958886|dbj|BAA78063.1| (AB000109) NADH
           dehydrogenase subunit 1 [Dictyostelium discoideum]
           Length = 317
           
 Score = 83.9 bits (204), Expect = 2e-15
 Identities = 81/308 (26%), Positives = 134/308 (43%), Gaps = 29/308 (9%)

Query: 1   MLRVIVNA---ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIK 50
           ML +I+      LI++    +G  F  ++ RKV A + +R GP +       QP+ D +K
Sbjct: 4   MLYIIIEGGLKSLIVIIGLLIGVAFATLLERKVMAAMQKRRGPNVVGFVGLLQPLADGLK 63

Query: 51  LFGKKEN---VTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGD-LILITFLLEIP 106
           L  K+     V   +I+    +     +I+    I +G  SV  +    +I I  +  I 
Sbjct: 64  LVLKETIIPIVADKLIYAIAPILTFTISIVLWSVIAVGVQSVFASINSGVIFILAISSIG 123

Query: 107 MLGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH 166
           + GI+ A  +S + YA +G  R+   +++ +V LG  I+++  Y GT +  EI M  Q  
Sbjct: 124 VYGIILAGWASNSKYAFLGGLRSAAQMVSYEVALGLIILSIITYAGTVNLQEI-MENQEK 182

Query: 167 GWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAI 226
            W  F +PLL   +   I       + PFD+  A  E+  G  VE+      +  +    
Sbjct: 183 VW--FIIPLLPGFLLAFISALTETNRPPFDLPEAEAELVSGYNVEYSSTGFALFFLGEYA 240

Query: 227 GLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
            +   ++  S  FLGG V    S+ IL  +  +G+L           I +    PR+  D
Sbjct: 241 NIILMSVLLSVFFLGGIV----SNKILGAMKGVGMLC--------SFIWVRATLPRYRYD 288

Query: 287 QAAKFYWK 294
           Q     WK
Sbjct: 289 QLMYLGWK 296


>sp|Q01148|NU1M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|66135|pir||DNWTU1 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - wheat
           mitochondrion
           Length = 325
           
 Score = 83.9 bits (204), Expect = 2e-15
 Identities = 78/290 (26%), Positives = 130/290 (43%), Gaps = 15/290 (5%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NV 58
           IL L+    +G  F+ +  RKV A V RR GP +       QP+ D +KL  K+    + 
Sbjct: 9   ILCLILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSS 68

Query: 59  THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAMSS 117
            +  +F    V     +++A   +P     VL      +L  F +  + + GI+ A  SS
Sbjct: 69  ANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSS 128

Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
            + YA +GA R+   +++ +V +G  ++ +    G+ +  EIVMAQ+   W  F +PL  
Sbjct: 129 NSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQK-QIW--FGIPLFP 185

Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
             + + I   A   + PFD+  A  E+  G  VE+      +  +     +   +   + 
Sbjct: 186 VLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSGLCTL 245

Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
           +FLGG  +     PI   +       IK L  LF+ I +   FPR+  DQ
Sbjct: 246 LFLGG-WLPILDLPISKKIPCSIWFSIKVLLFLFLYIWVRAAFPRYRYDQ 294


>pir||A69151 NADH dehydrogenase (ubiquinone), subunit 1 related protein -
           Methanobacterium thermoautotrophicum (strain Delta H)
           >gi|2621455|gb|AAB84899.1| (AE000824) NADH dehydrogenase
           (ubiquinone), subunit 1 related protein
           [Methanobacterium thermoautotrophicum]
           Length = 287
           
 Score = 83.5 bits (203), Expect = 3e-15
 Identities = 81/296 (27%), Positives = 139/296 (46%), Gaps = 32/296 (10%)

Query: 2   LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTHG 61
           + ++ N I+ +L A  +G + +G  RKV AR+ RR GPP+ Q ++ T+K + K+ +    
Sbjct: 1   MNLMGNIIVNVLIAFLIGSLLLGFQRKVMARIQRRPGPPVIQHLLHTLKFYVKESSFPRT 60

Query: 62  VIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPY 121
               F I  A+ AT+  +    +    VL   G L+L   +  +  +    A  SSG+PY
Sbjct: 61  AAMPFYI--AIAATLCGIWISAVIIGPVLE--GSLLLFFGIYALHKIVEHNAGSSSGSPY 116

Query: 122 AGIGAQRALLTLLAIQVPLGFAIVALAEYYGT--FSTYEIVMAQQVHGWSIFHLPLLLAA 179
             +   RA+ +  A ++PL FA++A+  Y  T      +I+  Q +HG  +  LP  LAA
Sbjct: 117 GKLSCVRAVFS-AAAEMPL-FAVLAII-YLQTRKMIISDIIGYQSIHGPLLLKLP--LAA 171

Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
           + + +++ +     PF I      IS G   E  G   G L +  +I  +     F  +F
Sbjct: 172 MMFFVLILSKAPYSPFSITKGKDIIS-GYETEHFGVLRGYLMISESIAWYMLLWIFLTVF 230

Query: 240 LGG----------AVITTF------SSPILNTLATLGVLLIKQLAVLFVAILISTI 279
           +GG           +ITT       ++P+LN   ++ +    Q+ + FV I  S +
Sbjct: 231 IGGLSLPLYILGMVIITTITAFINATTPMLNPNHSVAI----QVILAFVGIAGSIV 282


>gi|5834982 NADH dehydrogenase subunit 1 [Xenopus laevis]
           >gi|128655|sp|P03890|NU1M_XENLA NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|66134|pir||QXXL1M NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
           African clawed frog mitochondrion
           >gi|807683|gb|AAA66458.1| (M10217) NADH dehydrogenase 1
           [Xenopus laevis]
           Length = 323
           
 Score = 83.1 bits (202), Expect = 4e-15
 Identities = 85/307 (27%), Positives = 137/307 (43%), Gaps = 24/307 (7%)

Query: 1   MLRVIVNAILILLYAT--FVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKL 51
           ML +I + I  LLY     +   F+ +I RKV   +  R GP I       QPI D +KL
Sbjct: 1   MLTIITHLINPLLYMIPILLAVAFLTLIERKVLGYMQHRKGPNIVGPTGLIQPIADGVKL 60

Query: 52  FGK---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPML 108
           F K   + + +   +F      AL   +     +P+   S+      ++ I  L  + + 
Sbjct: 61  FIKEPVRPSTSSQTMFLIAPTMALALAMSIWAPLPM-PFSLADLNLGILFILALSSLAVY 119

Query: 109 GIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
            I+ +  SS + YA IGA RA+   ++ +V LG  ++ +    G F TY  +M  Q   W
Sbjct: 120 TILGSGWSSNSKYALIGALRAVAQTISYEVTLGLILLCMIMLAGGF-TYTTLMTTQEQMW 178

Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIG 227
            I  +P    A  + I   A   + PFD+     E+  G  VE+ GG +      ++A  
Sbjct: 179 LI--IPGWPMAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFSLAEYANI 236

Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
           L   TL +  +FLG + +   + P L T++    L+IK   +  + + +   +PRF  DQ
Sbjct: 237 LMMNTLSYLILFLGSSFM---NQPELTTIS----LMIKSSILSMIFLWVRASYPRFRYDQ 289

Query: 288 AAKFYWK 294
                WK
Sbjct: 290 LMHLVWK 296


>pir||S34389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - jelly fungus
           (Trimorphomyces papilionaceus) mitochondrion  (fragment)
           >gi|393384|emb|CAA52038.1| (X73821) NADH dehydrogenase
           subunit 1 [Trimorphomyces papilionaceus]
           Length = 332
           
 Score = 83.1 bits (202), Expect = 4e-15
 Identities = 86/320 (26%), Positives = 139/320 (42%), Gaps = 18/320 (5%)

Query: 1   MLRVIVNA--ILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKL 51
           ML V+ N   +LI+L    +   FM II RKV A + RR+GP       + QP  D +KL
Sbjct: 1   MLAVLYNLLEVLIVLVPILLSVAFMTIIERKVLAAMQRRVGPNKVGYYGVLQPFADALKL 60

Query: 52  FGKKENVTHGV---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPM 107
             K+  +       +F    V  L  ++L    IP G+   L  +   IL T  +  + +
Sbjct: 61  VVKETVIPAQATKSLFFLAPVITLIFSLLGWGVIPFGAGLTLSDFSLGILYTLAISSVGV 120

Query: 108 LGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
            G++FA  S+ + YA +G+ R+   +++ ++ L  AI+ +    G+F+   I+  Q+   
Sbjct: 121 YGVLFAGWSANSKYAFLGSLRSTAQMISYELILSSAILTVILLTGSFNIISIIENQEAI- 179

Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
           W  F +PLL   I + I   A   + PFD+  A  E+  G   E  G       +     
Sbjct: 180 W--FVVPLLPMFIIFFISALAETNRTPFDLPEAESELVAGFFTEHSGMIFVFFFLGEYCS 237

Query: 228 LFAETLFFSNIFLGG-AVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
           +   +   + +F GG  +   F +     L ++ VL +K     F+ +      PR   D
Sbjct: 238 IVLMSTLTAILFFGGYNMPELFVNDTFINLQSI-VLGLKTCMFCFLFVWFRATLPRLRYD 296

Query: 287 QAAKFYWKWPTIIAALGAIL 306
           Q   F W     IA    IL
Sbjct: 297 QLMVFCWTGMLPIAIALVIL 316


>gi|5835067 NADH dehydrogenase subunit 1 [Petromyzon marinus]
           >gi|3122452|sp|Q37603|NU1M_PETMA NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|1085193|pir||S55004 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - sea
           lamprey mitochondrion >gi|515486|gb|AAB08738.1| (U11880)
           NADH dehydrogenase subunit 1 [Petromyzon marinus]
           Length = 321
           
 Score = 83.1 bits (202), Expect = 4e-15
 Identities = 82/297 (27%), Positives = 135/297 (44%), Gaps = 24/297 (8%)

Query: 9   ILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKEN---VT 59
           IL+L+    V F+ M + RK    +  R GP +       QPI D +KLF K+       
Sbjct: 10  ILVLMVLLAVAFLTM-VERKTLGYMQLRKGPNVVGFMGLLQPIADGVKLFLKEPVWPLAA 68

Query: 60  HGVIFDFGIVFALGATILALMFIPLG-SISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
             ++F    + AL   +   M IP+  SIS +     L++I  +  + +  I+ +  +S 
Sbjct: 69  SPILFIVAPIMALTLALSLWMLIPMPQSISTINI--TLLVIMAISSLSVYAILGSGWASN 126

Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
           + YA IGA RA+   ++ +V LG  ++ L    G+FS    +  Q+ H W  F L     
Sbjct: 127 SKYALIGALRAVAQTISYEVSLGLILLCLVILTGSFSLQAFIYTQE-HTW--FLLSSWPL 183

Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFAETLFFSN 237
           A  + +   A   + PFD+     E+  G  VE+ GG +      +++  LF  TL  + 
Sbjct: 184 AAMWFVSTLAETNRTPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILFMNTL-TAI 242

Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           +FLG        S  LN L  + +++ K   ++ + + I   +PRF  DQ     WK
Sbjct: 243 MFLG-----PLGSNNLNILPIINIMM-KATPLIILFLWIRASYPRFRYDQLMHLMWK 293


>gi|11466642 NADH dehydrogenase subunit 1 [Malawimonas jakobiformis]
           >gi|10178680|gb|AAG13692.1|AF295546_18 (AF295546) NADH
           dehydrogenase subunit 1 [Malawimonas jakobiformis]
           Length = 323
           
 Score = 83.1 bits (202), Expect = 4e-15
 Identities = 79/310 (25%), Positives = 145/310 (46%), Gaps = 31/310 (10%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFG 53
           +L +I+  I I++    +G  ++ +  RK+ + V  R GP I       QP+ D +KLF 
Sbjct: 5   ILNIIIKIISIIV-PLLLGIAYLTLAERKILSAVQIRKGPNIIGFYGVLQPLADGLKLFL 63

Query: 54  KKE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLG 109
           K+    N  + +IF    +     + L    IP     VL      IL  F +  + + G
Sbjct: 64  KETILPNRANLIIFIIAPILTFSLSFLGWAVIPFNHGLVLADLNIGILYLFAVSSLGVYG 123

Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
           I+ +  +S + YA +G+ R+   +++ +V +G  ++++    G+ +  +IV++Q+    S
Sbjct: 124 IITSGWASNSKYAFLGSLRSTAQMISYEVSIGLILISVLLCSGSLNLTQIVLSQK----S 179

Query: 170 IFHL-PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
           ++++ PL    + + I + A   + PFD+     EI  G  VE+      +      +G 
Sbjct: 180 VWYMIPLFPLFVLFFISILAETNRPPFDLPEGESEIVAGYNVEYSSMGSALF----FLGE 235

Query: 229 FAETLFFSNI----FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFT 284
           +   +  S++    F+GG +   F  P  N LA      IK L  LF+ IL+   +PR+ 
Sbjct: 236 YGNIILMSSLCVVLFVGGWLSPIFFLP--NILA----FSIKVLFFLFLFILVRATYPRYR 289

Query: 285 IDQAAKFYWK 294
            DQ  +  WK
Sbjct: 290 YDQLMRLGWK 299


>gi|11466583 NADH dehydrogenase subunit 1 [Rhodomonas salina]
           >gi|10444170|gb|AAG17744.1|AF288090_20 (AF288090) NADH
           dehydrogenase subunit 1 [Rhodomonas salina]
           Length = 328
           
 Score = 83.1 bits (202), Expect = 4e-15
 Identities = 79/308 (25%), Positives = 139/308 (44%), Gaps = 33/308 (10%)

Query: 2   LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK 55
           L +IV  ++ + Y T +        RKV A + +R GP +       QP  D +KL  K+
Sbjct: 15  LAIIVPVLIAVAYLTLLE-------RKVMASMQQRRGPNVVGFFGLLQPFADGLKLLIKE 67

Query: 56  E---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIM 111
               +  +  IF F  +F    ++L+   IP G   V   +   +LI F +  + + G++
Sbjct: 68  TILPSSANTFIFIFAPIFTFLLSLLSWCVIPFGIDCVFLDFNIGVLIIFAISSLGVYGVV 127

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
            A  SS + Y+ +G  R+   +++ +V +G  I+ +    G+ +  +I+ AQ      +F
Sbjct: 128 LAGWSSNSKYSFLGGLRSAAQMISYEVSIGLLIMPVLICAGSLNLSKIIEAQN----DVF 183

Query: 172 HL-PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
           ++ PL    I + I   A   + PFD+  A  E+  G    F  +Y  +      +G ++
Sbjct: 184 YIIPLFPVFIMFFISALAETNRAPFDLPEAEAELVSG----FNTEYSAMAFALFFLGEYS 239

Query: 231 ETLFFSNI----FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
             +   ++    FLGG V   FS   LN +  +    +K   +LF  I +   FPR+  D
Sbjct: 240 NIILICSVTTIFFLGGWV-PVFS--FLNFIPGVVWFGLKTTFLLFAFIWVRAAFPRYRYD 296

Query: 287 QAAKFYWK 294
           Q  +  WK
Sbjct: 297 QLMRLGWK 304


>gi|11466477 NADH dehydrogenase subunit 1 [Chrysodidymus synuroideus]
           >gi|7110474|gb|AAF36946.1|AF222718_20 (AF222718) NADH
           dehydrogenase subunit 1 [Chrysodidymus synuroideus]
           Length = 326
           
 Score = 82.7 bits (201), Expect = 5e-15
 Identities = 78/306 (25%), Positives = 135/306 (43%), Gaps = 25/306 (8%)

Query: 4   VIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE 56
           +I   IL ++    +   +  +  RK+   +HRR GP +       QP+ D  KLF K+ 
Sbjct: 6   IIFIKILFIIVPLLISVAYFTLAERKILGAIHRRRGPNVVGVMGLLQPLSDGFKLFVKEA 65

Query: 57  NV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLL--EIPMLGIM 111
            V   ++ +IF          ++L    +P    S L A  +L ++ FL    + + GI+
Sbjct: 66  IVPSSSNKLIFILSPAVTFIISLLGWAIVPFNKYSTL-AEINLGILYFLAISSLGIYGII 124

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
            +  SS + YA +G+ R+   +++ +V +GF I  +    G+F+  EI+ +Q+   + I 
Sbjct: 125 MSGWSSNSKYAFLGSLRSTAQMISYEVAIGFIITTIIISVGSFNLQEIIDSQKFCWFIIT 184

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
             PL L    + I   A   + PFD+  A  E+  G  VE+      +  +     +   
Sbjct: 185 FFPLFL---MFSISGLAETNRHPFDLPEAESELVSGYNVEYSAMSFALFSLGEYSNMLLM 241

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL---ISTIFPRFTIDQA 288
           + F + +FLGG     + SP L+ L  +       + + F  IL   I    PR+  DQ 
Sbjct: 242 SSFVTILFLGG-----WQSP-LSLLIFIPNSFWFGIKISFFVILFVWIRAALPRYRYDQL 295

Query: 289 AKFYWK 294
               WK
Sbjct: 296 MSLGWK 301


>emb|CAB52765.1| (AJ243655) transmembrane protein 31.3 kDa (conserved)
           [Methanobacterium thermoautotrophicum]
           Length = 287
           
 Score = 81.9 bits (199), Expect = 9e-15
 Identities = 76/295 (25%), Positives = 137/295 (45%), Gaps = 26/295 (8%)

Query: 2   LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTHG 61
           + ++ N I+ +  A  VG + +G  R+V AR+ RR GPP+ Q ++ T+K + K+ +    
Sbjct: 1   MNLMGNIIVNVTIAFLVGSLLLGFQREVMARIQRRPGPPVIQHLLHTLKFYIKESSFPRT 60

Query: 62  VIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPY 121
               F +  A+ AT+  +    +    VL   G L+L   +  +  +    A  SSG+PY
Sbjct: 61  AAMPFYV--AIAATLCGIWISAVIVGPVLE--GSLLLFFGIYALHKIVEHNAGSSSGSPY 116

Query: 122 AGIGAQRALLTLLAIQVPLGFAIVALAEYY-GTFSTYEIVMAQQVHGWSIFHLPLLLAAI 180
             +   RA+ +  A ++PL FA++A+      T    +I+  Q +HG  I  LP  LAA+
Sbjct: 117 GKLSCVRAVFS-AAAELPL-FAVLAIIYLQTRTMMISDIIGYQSIHGPLILKLP--LAAM 172

Query: 181 AYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFL 240
            + +++ +     PF I      IS G   E  G   G L +  +I  +     F  +F+
Sbjct: 173 MFFVLILSKAPYSPFSITKGKDIIS-GYETEHFGVLRGYLMISESIAWYMLLWIFLTVFI 231

Query: 241 GG-------------AVITTF---SSPILNTLATLGVLLIKQLAVLFVAILISTI 279
           GG               +T F   ++P+LN   ++ + +I   A +  +I++  +
Sbjct: 232 GGLSLPLYILGMVIITAVTAFINATTPMLNPNHSVAIQVILAFAGIAGSIILMLV 286


>gi|11466331 NADH dehydrogenase subunit 1 [Cafeteria roenbergensis]
           >gi|6180113|gb|AAF05810.1|AF193903_33 (AF193903) NADH
           dehydrogenase subunit 1 [Cafeteria roenbergensis]
           Length = 336
           
 Score = 81.9 bits (199), Expect = 9e-15
 Identities = 69/314 (21%), Positives = 142/314 (44%), Gaps = 23/314 (7%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
           +L+ I+  + ++++       ++ + R++   V RR GP       + Q I D +KL  K
Sbjct: 5   ILKQILYFLALIIFVLLSVAFYVLLERQILGHVTRRQGPSTVGIFGLLQTIADALKLLAK 64

Query: 55  KE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGI 110
           +       + ++F F  +F  G  +   + IP G+   +  +   ++ +  L  + +  I
Sbjct: 65  ESVFPRSINTIVFIFAPIFTCGLALANWVVIPFGNGWAVADFNLGVLYLLALSSLSVHSI 124

Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
           + A  SS + YA +GA R+   +++ ++ +G  ++++     + +  +IVMA Q + W  
Sbjct: 125 IMAGWSSNSKYAFLGALRSAAQMISYEIAMGLILLSVILLSQSLNLTDIVMA-QYNVW-- 181

Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
           F +PL    + + I + A   + PFD+  A  E+  G  VE+      +  +     +  
Sbjct: 182 FFIPLFPLFLMFLICILAETNRHPFDLPEAEAELVSGYNVEYSAVGFVLFFLAEYNNIIM 241

Query: 231 ETLFFSNIFLGGAVITTFS-----SPILNTLATLGV-----LLIKQLAVLFVAILISTIF 280
            + F + +FLGG  +  +S       IL  +    +       +K + V+   ++I T  
Sbjct: 242 MSAFTNILFLGGWNVPFYSFWFFGDGILRNIFESYLWPSLFFSLKTILVMIFFVIIRTAL 301

Query: 281 PRFTIDQAAKFYWK 294
           PR+  DQ  +  WK
Sbjct: 302 PRYRYDQLMRLGWK 315


>gi|6137789 NADH dehydrogensae subunit 1 [Metridium senile]
           >gi|3122451|sp|Q37556|NU1M_METSE NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431940|pir||T11890 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - sea
           anemone (Metridium senile) mitochondrion
           >gi|1353406|gb|AAC47100.1| (U36784) NADH dehydrogenase
           subunit 1 [Metridium senile] >gi|2920991|gb|AAC04636.1|
           (AF000023) NADH dehydrogensae subunit 1 [Metridium
           senile]
           Length = 334
           
 Score = 81.5 bits (198), Expect = 1e-14
 Identities = 80/317 (25%), Positives = 136/317 (42%), Gaps = 19/317 (5%)

Query: 5   IVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKEN 57
           I+  ILI++    V   ++ +  RKV   +  R GP +       QP+ D IKLF K+  
Sbjct: 15  IILKILIIVIPLLVAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPLADGIKLFTKELV 74

Query: 58  VTHGV---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFA 113
           + H     I+    V +    ++A   IP     V+      IL T  +  I +  I+ +
Sbjct: 75  IPHYANLFIYVAAPVLSFTLALIAWGVIPYDKGVVISDLKIGILFTLAVSSISVYAILMS 134

Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHL 173
             +S + YA +GA RA   +++ +V +G  I+ +    G+ +  EIV+AQ    W  F  
Sbjct: 135 GWASQSKYAFLGAIRAAAQMISYEVSIGLIIITVILCVGSLNITEIVLAQSSGIW--FFF 192

Query: 174 PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETL 233
           PL   A+ +     A   + PFD+     E+  G  VE+      +  +     +   + 
Sbjct: 193 PLFPVAMMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSC 252

Query: 234 FFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
             + +FLGG     + SPI+          +K   ++ + I +   FPR   DQ     W
Sbjct: 253 LTTILFLGG-----WLSPIVFFKGGPAWFGLKTSFIILLFIWVRASFPRMRYDQLMALLW 307

Query: 294 K-WPTIIAALGAILASL 309
           K +  +  A   ++ASL
Sbjct: 308 KSYLPLSLAFVVLVASL 324


>emb|CAA75485.1| (Y15186) NADH dehydrogenase subunit 1 [Myxine glutinosa]
           Length = 317
           
 Score = 81.5 bits (198), Expect = 1e-14
 Identities = 81/305 (26%), Positives = 142/305 (46%), Gaps = 26/305 (8%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           M ++I + +  ++    V F+ + I RKV   +  R GP I       QP  D IKLF K
Sbjct: 1   MSQIISSLLTFVMILIAVAFLTL-IERKVLGYMQLRKGPNIVGPFGLLQPFADGIKLFIK 59

Query: 55  KE-NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLIL-ITFLLEIPMLGI-- 110
           +    ++  IF F +  AL  ++  +++I   S+ +  A  D+ L + F+L I  L +  
Sbjct: 60  EPLQPSYASIFLFILAPALAISLALILWI---SLPLPLALSDMNLGLMFILAISSLSVYS 116

Query: 111 -MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
            + +  +S + YA +GA RA+   ++ +V LG  IVAL    G F   ++ +  Q   W 
Sbjct: 117 LLTSGWASNSKYALMGALRAVAQTISYEVTLGLMIVALTILSGGFD-LKLFIDLQNKIWL 175

Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
           +F  P+    + + I   A   + PFD+     E+  G  VEF G    +      +  +
Sbjct: 176 LF--PMWPIFLMWFISTLAETNRSPFDLTEGESELVSGFNVEFSGGLFALF----FLAEY 229

Query: 230 AETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAA 289
           A  LF +++     V+    S  L++L     + +K + ++F+ + +   +PRF  DQ  
Sbjct: 230 ANILFMNSL----TVVLFMGSSNLSSLYFSASMTMKTMFLIFLFLWVRASYPRFRYDQLM 285

Query: 290 KFYWK 294
              WK
Sbjct: 286 HLMWK 290


>gi|5835555 NADH dehydrogenase subunit 1 [Ovis aries]
           >gi|6093557|sp|O78747|NU1M_SHEEP NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431945|pir||T11050 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - sheep
           mitochondrion >gi|3366623|gb|AAD10096.1| (AF010406) NADH
           dehydrogenase subunit 1 [Ovis aries]
           Length = 318
           
 Score = 81.5 bits (198), Expect = 1e-14
 Identities = 77/302 (25%), Positives = 132/302 (43%), Gaps = 21/302 (6%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           M+ V+   I ILL   F+      + RKV   +  R GP +       QPI D IKLF K
Sbjct: 3   MINVLTLIIPILLAVAFLTL----VERKVLGYMQFRKGPNVVGPYGLLQPIADAIKLFIK 58

Query: 55  KE-NVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMF 112
           +        I  F +   L  T+   M+IPL     ++     ++ +  +  + +  I++
Sbjct: 59  EPLRPATSSISMFILAPILALTLALTMWIPLPMPYPLINMNLGVLFMLAMSSLAVYSILW 118

Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFH 172
           +  +S + YA IGA RA+   ++ +V L   ++++    G+F+   +++ Q+   W IF 
Sbjct: 119 SGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLIITQE-QVWLIF- 176

Query: 173 LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAET 232
            P    A+ + I   A   + PFD+     E+  G  VE+      +  +     +    
Sbjct: 177 -PAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMN 235

Query: 233 LFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFY 292
           +F + +FLG      F +P +  L T+    IK L +    + I   +PRF  DQ     
Sbjct: 236 IFTTTLFLG-----AFHNPYMPELYTIN-FTIKSLLLSITFLWIRASYPRFRYDQLMHLL 289

Query: 293 WK 294
           WK
Sbjct: 290 WK 291


>gb|AAF97804.1|AF281148_8 (AF281148) NADH dehydrogenase I subunit H [Pseudomonas fluorescens]
           Length = 331
           
 Score = 81.5 bits (198), Expect = 1e-14
 Identities = 77/307 (25%), Positives = 137/307 (44%), Gaps = 20/307 (6%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
           ++  ++ AI+ILL     G +   + R++      R GP       ++Q   D IK+F K
Sbjct: 11  VILTVLKAIVILLAVVVAGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMIKMFFK 70

Query: 55  KE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGI 110
           ++        VIF    V A+ A ++A   IP+     +      +L  F +  + +  +
Sbjct: 71  EDWTPPFADKVIFTLAPVVAMSALLIAFAIIPITPTWGVADLNIGLLFFFAMAGLSVYPV 130

Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
           +FA  SS N +A +G+ RA    ++ +V +G +++ +    G+F+  +IV  Q  + W  
Sbjct: 131 LFAGWSSNNKFALLGSLRASAQTVSYEVFMGLSLMGIVIQAGSFNMRDIVEYQAQNLW-- 188

Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
           F +P       + I   A+  + PFD   A  E++ G  +E+ G   G+  V   IG+  
Sbjct: 189 FIIPQFFGFCTFFIAGVAVTHRHPFDQPEAEQELADGYHIEYAGMKWGMFFVGEYIGIIL 248

Query: 231 ETLFFSNIFLGGAVITTFSSP--ILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQA 288
            +     +F GG     +  P  IL  L+ +   L K    + + +L +   PR   DQ 
Sbjct: 249 ISALLVTLFFGG-----WHGPFDILPQLSFVWFAL-KTAFFIMLFVLCAPRTPRPRYDQV 302

Query: 289 AKFYWKW 295
             F WK+
Sbjct: 303 MDFSWKF 309


>gi|5834858 NADH dehydrogenase subunit 1 [Phoca vitulina]
           >gi|128649|sp|Q00505|NU1M_PHOVI NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|284542|pir||S26151 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - harbor
           seal mitochondrion >gi|13432|emb|CAA45257.1| (X63726)
           NADH dehydrogenase subunit 1 [Phoca vitulina]
           Length = 318
           
 Score = 81.1 bits (197), Expect = 2e-14
 Identities = 74/303 (24%), Positives = 133/303 (43%), Gaps = 23/303 (7%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           M+ +I   I ILL   F+      + RKV   +  R GP I       QPI D +KLF K
Sbjct: 3   MINIISLIIPILLAVAFLTL----VERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTK 58

Query: 55  ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
              +   +   +F    + AL   +   + +P+    +    G L ++  +  + +  I+
Sbjct: 59  EPLRPLTSSTTMFIMAPILALALALTMWVPLPMPYPLINMNLGVLFMLA-MSSLAVYSIL 117

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
           ++  +S + YA IGA RA+   ++ +V L   ++++    G+F+   +++ Q+ H W IF
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLIITQE-HLWLIF 176

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
             P    A+ + I   A   + PFD+     E+  G  VE+      +  +     +   
Sbjct: 177 --PAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIIMM 234

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
            +F + +F G      F +P +  L  +    +K LA+  + + I   +PRF  DQ    
Sbjct: 235 NIFTTLLFFG-----AFHNPYMPELYVIN-FTVKTLALTILFLWIRASYPRFRYDQLMHL 288

Query: 292 YWK 294
            WK
Sbjct: 289 LWK 291


>gi|5834898 NADH dehydrogenase subunit 1 [Strongylocentrotus purpuratus]
           >gi|128654|sp|P15548|NU1M_STRPU NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|85385|pir||S01499 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - sea
           urchin (Strongylocentrotus purpuratus) mitochondrion
           >gi|13665|emb|CAA31151.1| (X12631) NADH dehydrogenase
           (ND1) subunit 1 [Strongylocentrotus purpuratus]
           Length = 322
           
 Score = 81.1 bits (197), Expect = 2e-14
 Identities = 83/319 (26%), Positives = 142/319 (44%), Gaps = 27/319 (8%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           +L +I   I ILL   F+      + RKV   +  R GP +       QP  D +K+F K
Sbjct: 7   ILELISFLIPILLSVAFLTL----VERKVLGYMQFRNGPNVVGPFGLLQPFADGMKVFIK 62

Query: 55  KENV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
           +E     +   +F F  +  L   +L   F+P+ +   L     L+L+  L  + +  I+
Sbjct: 63  EELKPVNSSPYLFFFSPLLFLALALLLWNFMPVHT-PTLDLQLSLLLVLGLSSLSVYAIL 121

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
            +  +S + Y+ +GA RA+   ++ ++ L   +++L  +  +F+   I+  Q+   +S+ 
Sbjct: 122 GSGWASNSKYSLLGAIRAVAQTISYEISLALILLSLIIFSSSFNLTYIMNTQEFSWFSLS 181

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
            LPL      + +   A   + PFD+     EI  G  VE+ G    +  +     +   
Sbjct: 182 CLPLFYI---WFVSTLAETNRAPFDLTEGESEIVSGYNVEYAGGPFVLFFIAEYANIILM 238

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIK-QLAVLFVAILISTIFPRFTIDQAAK 290
             F   +FLGG       SP LN L  + ++++  +   LF  + +   +PRF  DQ   
Sbjct: 239 NYFSVVLFLGG------PSP-LNNLFPISIIIVGIKTTFLFSVLWVRAAYPRFRYDQLMF 291

Query: 291 FYWK--WPTIIAALGAILA 307
             WK   P  I AL AILA
Sbjct: 292 LTWKSYLPLSIGALCAILA 310


>gi|5835010 NADH dehydrogenase subunit 1 [Halichoerus grypus]
           >gi|585590|sp|P38598|NU1M_HALGR NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|543077|pir||S41835 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - gray
           seal mitochondrion >gi|414758|emb|CAA50877.1| (X72004)
           NADH-ubiquinone oxidoreductase subunit 1 [Halichoerus
           grypus]
           Length = 318
           
 Score = 80.4 bits (195), Expect = 3e-14
 Identities = 75/304 (24%), Positives = 135/304 (43%), Gaps = 25/304 (8%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           M+ +I   I ILL   F+      + RKV   +  R GP I       QPI D +KLF K
Sbjct: 3   MINIISLIIPILLAVAFLTL----VERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTK 58

Query: 55  ---KENVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGI 110
              +   +   +F    + AL  T+   M++PL     ++     ++ +  +  + +  I
Sbjct: 59  EPLRPLTSSTTMFIMAPILAL--TLALTMWVPLPMPYPLINMNLGVLFMLAMSSLAVYSI 116

Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
           +++  +S + YA IGA RA+   ++ +V L   ++++    G+F+   +++ Q+ H W I
Sbjct: 117 LWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLIITQE-HLWLI 175

Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
           F  P    A+ + I   A   + PFD+     E+  G  VE+      +  +     +  
Sbjct: 176 F--PAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIIM 233

Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
             +F + +F G      F +P +  L  +    +K LA+  + + I   +PRF  DQ   
Sbjct: 234 MNIFTTLLFFG-----AFHNPYMPELYVVN-FTVKTLALTILFLWIRASYPRFRYDQLMH 287

Query: 291 FYWK 294
             WK
Sbjct: 288 LLWK 291


>gi|5835835 NADH dehydrogenase subunit 1 [Pongo pygmaeus abelii]
           >gi|2829775|sp|P92690|NU1M_PONPA NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|1743295|emb|CAA66283.1|
           (X97707) NADH1 [Pongo pygmaeus abelii]
           Length = 318
           
 Score = 80.4 bits (195), Expect = 3e-14
 Identities = 76/298 (25%), Positives = 131/298 (43%), Gaps = 24/298 (8%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPI------YQPIIDTIKLFGKKE-NVTH 60
           +L+L+ +  +   F+ +  RK+      R GP I       QP  D +KLF K+    + 
Sbjct: 6   LLLLIMSILIAMAFLMLTERKILGHTQLRKGPNIVGPYGLLQPFADALKLFTKEPLKPST 65

Query: 61  GVIFDFGIVFALGATILALMFIPLG-SISVLRAYGDLILITFLLEIPMLGIMFAAMSSGN 119
             I  + I  AL  TI  L++ PL   I ++     L+ I     + +  I+++  +S +
Sbjct: 66  STITLYIISPALALTIALLLWTPLPMPIPLINLNLGLLFILAASSLTVYSILWSGWASNS 125

Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
            YA IGA RA+   ++ ++ L   ++++    G+F+   ++  Q+ H W +  LP    A
Sbjct: 126 NYALIGALRAVAQTISYEITLALILLSVLLMSGSFNLSALITTQE-HSWLL--LPSWPLA 182

Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
           + + I   A   + PFD+     E+  G   E+      +  +     +       + IF
Sbjct: 183 LMWFISTLAETNRAPFDLTEGESELVSGFNTEYAAGPFALFFMAEYTNIILMNALTTMIF 242

Query: 240 LGGAVITTF---SSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           LG    TTF   S  +  TL T+  LL+  L      + I + +PRF  DQ     WK
Sbjct: 243 LG----TTFNIHSPELYTTLFTIKTLLLTSL-----FLWIRSTYPRFRYDQLMHLLWK 291


>gi|5835693 NADH dehydrogenase subunit 1 [Ixodes hexagonus]
           >gi|7431928|pir||T11272 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - hardbacked tick (Ixodes
           hexagonus) mitochondrion >gi|4164555|gb|AAD05516.1|
           (AF081828) NADH dehydrogenase 1 [Ixodes hexagonus]
           Length = 313
           
 Score = 80.4 bits (195), Expect = 3e-14
 Identities = 69/295 (23%), Positives = 130/295 (43%), Gaps = 30/295 (10%)

Query: 10  LILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHGV 62
           + L+    V   F  ++ RK+   +H R GP       ++QP  D IKLF K+ N+   +
Sbjct: 8   IFLIMCVLVSVAFFTLLERKILGYIHIRKGPNKVGFIGVFQPFSDAIKLFSKEMNMMFYI 67

Query: 63  IFDFGIVFALGATILALMFIPLGS---ISVLRAYGDLILITFLLEIPMLGIMFAAMSSGN 119
              F I+ ++   IL +    L S     +L  YG ++ +  +  + +  I+F   SS +
Sbjct: 68  NMIFYIISSVVLLILMMSLWFLFSWDYNQILIEYG-MVFLLCISSLSVYVILFGGWSSNS 126

Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
            YA +G+ R    +++ +V L   ++++  + G++S  +I M Q +    +    LL   
Sbjct: 127 KYALLGSYRGGAQVISYEVSLSLWLISVIFFCGSYSIMKIEMFQNLWIMLVGFFNLL--- 183

Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
           I + +   A   + PFD+     E+  G  +E+G     +L +     +   ++  +N+F
Sbjct: 184 IVWMVSCFAETNRSPFDLSEGESELVSGFNIEYGSWNFAVLFIAEYGNIILISVITTNLF 243

Query: 240 LGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
            G                 +GV++I  L V+ + ILI     R+  D+     WK
Sbjct: 244 FG----------------DMGVMMINVLVVMVLFILIRGTLVRYRYDKLMMLAWK 282


>sp|P42032|NUOH_RHOCA NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
           8) (NUO8) >gi|282170|pir||S22368 NADH dehydrogenase
           (ubiquinone) (EC 1.6.5.3) chain 1 - Rhodobacter
           capsulatus >gi|3282571|gb|AAC24997.1| (AF029365) NUOH
           [Rhodobacter capsulatus] >gi|1586520|prf||2204231A NADH
           ubiquinone oxidoreductase [Rhodobacter capsulatus]
           Length = 345
           
 Score = 80.0 bits (194), Expect = 3e-14
 Identities = 77/322 (23%), Positives = 136/322 (41%), Gaps = 35/322 (10%)

Query: 9   ILILLYATFVGFMFMGII------RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE 56
           IL+      + F+ +G++      RK+ A V  R GP +       Q + D  K   K+ 
Sbjct: 14  ILLAQGLGIIAFVMIGLLLLVWGDRKIWAAVQMRKGPNVVGAFGLLQSVADAAKYVFKEI 73

Query: 57  NVTHGV---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMF 112
            V  GV   ++    + +L   +LA + +P     V+      +L  F +  + + G++ 
Sbjct: 74  VVPAGVDKPVYFLAPMLSLVLALLAWVVVPFNEGWVMADINVAVLFVFAVSSLEVYGVIM 133

Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ----VHGW 168
              +S + Y  +G+ R+   +++ +V +G  IV +    G+ +   IV AQ+    +  W
Sbjct: 134 GGWASNSKYPFLGSLRSAAQMISYEVSMGLIIVGVIISTGSMNLSAIVEAQRGDFGLLNW 193

Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
             + LP L     + I   A   + PFD+  A  E+  G MVE+      +      I +
Sbjct: 194 --YWLPHLPMVALFFISALAETNRPPFDLPEAESELVAGFMVEYSSTPYLLFMAGEYIAV 251

Query: 229 FAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQA 288
           +      S +F GG     + SPI      +  ++ K  AV FV  ++  I PR+  DQ 
Sbjct: 252 WLMCALTSVLFFGG-----WLSPIPGVPDGVLWMVAKMAAVFFVFAMVKAIVPRYRYDQL 306

Query: 289 AKFYWK--------WPTIIAAL 302
            +  WK        W  ++A L
Sbjct: 307 MRIGWKVFLPLSLAWVVVVAFL 328


>gi|5835086 NADH dehydrogenase subunit 1 [Asterina pectinifera]
           >gi|1542806|dbj|BAA03879.1| (D16387) NADH-dehydrogenase
           subunit 1 [Asterina pectinifera]
           Length = 326
           
 Score = 80.0 bits (194), Expect = 3e-14
 Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 22/300 (7%)

Query: 6   VNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK---KE 56
           VN+IL ++       +   + RKV   +  R GP I       QPI D  KL  K   K 
Sbjct: 8   VNSILFIVPVLLAVALLTLVERKVLGYMQLRKGPNIVGPFGLLQPIADGFKLLIKETLKP 67

Query: 57  NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMS 116
           +     +F F  V  LG  ++    IP+   SV+     L+LI  L  + +  ++ +  S
Sbjct: 68  SNASPYLFFFSPVLFLGIALVLWSVIPV-KYSVVSVNLSLMLIIGLSSLSVYSLLGSGWS 126

Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
           S + Y+ +GA RA+   ++ ++ LG  ++ +  + G F+  E++ + Q   W +F    L
Sbjct: 127 SNSNYSFLGAVRAVAQTVSYEISLGLILLGVVLFAGGFNV-EVIESSQSWSWLMFSCFPL 185

Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
            A   + +   A   + PFD+     EI  G  VE+ G    +  +     +    L   
Sbjct: 186 FAI--WFVSTLAETNRAPFDLTEGESEIVSGYNVEYAGGPFAMFFIAEYANIIFINLLSV 243

Query: 237 NIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL--ISTIFPRFTIDQAAKFYWK 294
            +FLGG      SSP +     + VL++   A + V +   +   +PRF  DQ     WK
Sbjct: 244 LLFLGG------SSP-MGEFFPVNVLVVSLKAGVLVLLFLWVRASYPRFRYDQLMYLTWK 296


>sp|P23650|NU1M_ASTPE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|2133767|pir||S70596 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
           starfish (Asterina pectinifera) mitochondrion
           Length = 326
           
 Score = 80.0 bits (194), Expect = 3e-14
 Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 22/300 (7%)

Query: 6   VNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK---KE 56
           VN+IL ++       +   + RKV   +  R GP I       QPI D  KL  K   K 
Sbjct: 8   VNSILFIVPVLLAVALLTLVERKVLGYMQLRKGPNIVGPFGLLQPIADGFKLLIKETLKP 67

Query: 57  NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMS 116
           +     +F F  V  LG  ++    IP+   SV+     L+LI  L  + +  ++ +  S
Sbjct: 68  SNASPYLFFFSPVLFLGIALVLWSVIPV-KYSVVSVNLSLMLIIGLSSLSVYSLLGSGWS 126

Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
           S + Y+ +GA RA+   ++ ++ LG  ++ +  + G F+  E++ + Q   W +F    L
Sbjct: 127 SNSNYSFLGAVRAVAQTVSYEISLGLILLGVVLFAGGFNV-EVIESSQSWSWLMFSCFPL 185

Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
            A   + +   A   + PFD+     EI  G  VE+ G    +  +     +    L   
Sbjct: 186 FAI--WFVSTLAETNRAPFDLTEGESEIVSGYNVEYAGGPFAMFFIAEYANIIFINLLSV 243

Query: 237 NIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL--ISTIFPRFTIDQAAKFYWK 294
            +FLGG      SSP +     + VL++   A + V +   +   +PRF  DQ     WK
Sbjct: 244 LLFLGG------SSP-MGEFFPVNVLVVSLKAGVLVLLFLWVRASYPRFRYDQLMYLTWK 296


>sp|O21077|NU1M_MYXGL NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|7431965|pir||T13816 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
           Atlantic hagfish mitochondrion
           >gi|2340020|emb|CAA70716.1| (Y09527) NADH dehydrogenase
           subunit 1 [Myxine glutinosa]
           Length = 318
           
 Score = 80.0 bits (194), Expect = 3e-14
 Identities = 80/303 (26%), Positives = 141/303 (46%), Gaps = 26/303 (8%)

Query: 3   RVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKE 56
           ++I + +  ++    V F+ + I RKV   +  R GP I       QP  D IKLF K+ 
Sbjct: 4   QIISSFLTFVMILIAVAFLTL-IERKVLGYMQLRKGPNIVGPFGLLQPFADGIKLFIKEP 62

Query: 57  -NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLIL-ITFLLEIPMLGI---M 111
              ++  IF F +  AL  ++  +++I   S+ +  A  D+ L + F+L I  L +   +
Sbjct: 63  LQPSYASIFLFILAPALAISLALILWI---SLPLPLALSDMNLGLMFILAISSLSVYSLL 119

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
            +  +S + YA +GA RA+   ++ +V LG  IVAL    G F   ++ +  Q   W +F
Sbjct: 120 TSGWASNSKYALMGALRAVAQTISYEVTLGLMIVALTILSGGFD-LKLFIDLQNKIWLLF 178

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
             P+    + + I   A   + PFD+     E+  G  VEF G    +      +  +A 
Sbjct: 179 --PMWPIFLMWFISTLAETNRSPFDLTEGESELVSGFNVEFSGGLFALF----FLAEYAN 232

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
            LF +++     V+    S  L++L     + +K + ++F+ + +   +PRF  DQ    
Sbjct: 233 ILFMNSL----TVVLFMGSSNLSSLYFSASMTMKTMFLIFLFLWVRASYPRFRYDQLMHL 288

Query: 292 YWK 294
            WK
Sbjct: 289 MWK 291


>pir||T34617 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 SC10A7.14c
           [similarity] - Streptomyces coelicolor
           >gi|5042270|emb|CAB44524.1| (AL078618) nuoH, NADH
           dehydrogenase subunit [Streptomyces coelicolor]
           Length = 467
           
 Score = 80.0 bits (194), Expect = 3e-14
 Identities = 78/336 (23%), Positives = 142/336 (42%), Gaps = 37/336 (11%)

Query: 4   VIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQP------IIDTIKLFGKKEN 57
           V++ A+    +        +   RKV A +  RIGP  + P      + D IKL  K++ 
Sbjct: 21  VVIKAVFCFAFLMVTVLFSIVWERKVVAWMQLRIGPNRHGPWGMLQSLADGIKLMLKEDV 80

Query: 58  VTHGV---IFDFGIVFALGATILALMFIPLGSI-SVLRAYGD------------LILITF 101
           +       ++    + A     +A+  IP G   + +  +G             ++ I  
Sbjct: 81  IVKRADKAVYVLAPIVAAIPAFMAIAVIPFGPAGNEVSIFGHRTAMQLTDLPIAMLFILA 140

Query: 102 LLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVM 161
           +  + + GI+ A  SSG+ Y  +G  R+   +++ ++ +G A  ++  Y G+ ST EIV 
Sbjct: 141 VASVGIYGIVLAGWSSGSTYPLLGGLRSCAQMISYEIAMGAAFASVFLYSGSMSTSEIV- 199

Query: 162 AQQVHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQ 221
           AQQ   W I  LP  ++ I Y + +     + PFD+  + G++  G   E+      +  
Sbjct: 200 AQQDDRWYIVLLP--VSFILYIVTMVGETNRAPFDMPESEGDLVGGFNTEYSSIKFAMFM 257

Query: 222 VQHAIGLFAETLFFSNIFLGG----AVITTFSSPILNTLATLGVLLIKQLAVLFVAILIS 277
           +   + +   +   + +FLGG      I+TF     +    L   ++K   +LF  I + 
Sbjct: 258 LAEYVNMVTVSAVATTLFLGGWRAPWPISTFWEGANHGWWPLLWFVVKVQLLLFFFIWLR 317

Query: 278 TIFPRFTIDQAAKFYWK--------WPTIIAALGAI 305
              PR   DQ  K  WK        W  ++A + A+
Sbjct: 318 GTLPRVRYDQLMKLGWKVLIPVSLVWLMLVATVRAL 353


>gb|AAF66632.1| (AF143002) NADH dehydrogenase subunit 1 [Hipposideros diadema]
           Length = 318
           
 Score = 80.0 bits (194), Expect = 3e-14
 Identities = 72/303 (23%), Positives = 136/303 (44%), Gaps = 23/303 (7%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           M+ +++  + ILL   F+      + RKV   +  R GP +       QPI D IKLF K
Sbjct: 3   MINLLLMIVPILLAVAFLTL----VERKVLGYMQLRKGPNVVGPYGLLQPIADAIKLFTK 58

Query: 55  K--ENVTHGV-IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
           +    +T  + +F    + AL   +     +P+    +    G L ++  +  + +  I+
Sbjct: 59  EPLRPLTSSISMFIIAPILALALALTMWTPLPMPYPLINMNLGVLFMLA-MSSLAVYSIL 117

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
           ++  +S + YA IGA RA+   ++ +V L   ++++    G+F+   ++  Q+ H W I 
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLLNGSFTLPTLITTQE-HMWLI- 175

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
            +P    A+ + I   A   + PFD+     E+  G  VE+ G    +  +     +   
Sbjct: 176 -IPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMM 234

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
            +F + +FLG      F +P++  L T+   + K + +    + +   +PRF  DQ    
Sbjct: 235 NIFTTILFLG-----AFHNPLMPELYTIN-FVTKSMLLTISFLWVRASYPRFRYDQLMHL 288

Query: 292 YWK 294
            WK
Sbjct: 289 LWK 291


>gi|5835108 NADH dehydrogenase subunit 1 [Equus caballus]
           >gi|1352541|sp|P48652|NU1M_HORSE NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431939|pir||T11857 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - horse
           mitochondrion >gi|577572|emb|CAA56079.1| (X79547) NADH
           dehydrogenase [Equus caballus]
           Length = 318
           
 Score = 79.6 bits (193), Expect = 4e-14
 Identities = 74/296 (25%), Positives = 134/296 (45%), Gaps = 20/296 (6%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKK--ENVT 59
           +L+L+    +   F+ ++ RKV   +  R GP I       QPI D +KLF K+  + +T
Sbjct: 6   VLLLIVPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADALKLFIKEPLQPLT 65

Query: 60  HGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
                 F I   L  T+   M+IPL     ++     ++ +  +  + +  I+++  +S 
Sbjct: 66  SSTSM-FIIAPILALTLALTMWIPLPMPYPLINMNLGILFMLAMSSLAVYSILWSGWASN 124

Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
           + YA IGA RA+   ++ +V L   ++++    G+F+   +++ Q+ + W IF  P    
Sbjct: 125 SKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFTLSTLIITQE-YLWLIF--PSWPL 181

Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
           A+ + I   A   + PFD+     E+  G  VE+      +  +     +    +F + +
Sbjct: 182 AMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNIFTTTL 241

Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           FLG      F +P L  L ++    IK L +    + I   +PRF  DQ     WK
Sbjct: 242 FLG-----AFHNPYLPELYSIN-FTIKALLLTCSFLWIRASYPRFRYDQLMHLLWK 291


>gi|5835346 NADH dehydrogenase subunit 1 [Equus asinus]
           >gi|3122445|sp|P92475|NU1M_EQUAS NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431955|pir||T11363 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - donkey
           mitochondrion >gi|1805747|emb|CAA66014.1| (X97337) NADH
           dehydrogenase subunit 1 [Equus asinus]
           Length = 318
           
 Score = 79.6 bits (193), Expect = 4e-14
 Identities = 77/303 (25%), Positives = 136/303 (44%), Gaps = 23/303 (7%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           M+ V++  I ILL   F+      + RK+   +  R GP I       QPI D +KLF K
Sbjct: 3   MINVLLLIIPILLAVAFLTL----VERKILGYMQLRKGPNIVGPYGLLQPIADALKLFIK 58

Query: 55  K--ENVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIM 111
           +  + +T      F I   L  T+   M+IPL     ++     ++ +  +  + +  I+
Sbjct: 59  EPLQPLTSSTSM-FIIAPILALTLALTMWIPLPMPYPLINMNLGILFMLAMSSLAVYSIL 117

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
           ++  +S + YA IGA RA+   ++ +V L   ++++    G+F+   +++ Q+ + W IF
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFTLSTLIITQE-YLWLIF 176

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
             P    A+ + I   A   + PFD+     E+  G  VE+      +  +     +   
Sbjct: 177 --PSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMM 234

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
            +F + +FLG      F SP L  L ++    +K L +    + I   +PRF  DQ    
Sbjct: 235 NIFTTTLFLG-----AFHSPYLPELYSIN-FTMKTLLLTCSFLWIRASYPRFRYDQLMHL 288

Query: 292 YWK 294
            WK
Sbjct: 289 LWK 291


>gi|11466505 NADH dehydrogenase, subunit 1 [Reclinomonas americana]
           >gi|7431897|pir||S78136 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - Reclinomonas americana (ATCC
           50394) mitochondrion >gi|2258335|gb|AAD11869.1|
           (AF007261) NADH dehydrogenase, subunit 1 [Reclinomonas
           americana]
           Length = 333
           
 Score = 79.6 bits (193), Expect = 4e-14
 Identities = 73/303 (24%), Positives = 137/303 (45%), Gaps = 17/303 (5%)

Query: 4   VIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE 56
           +I+  IL L+    +   ++ ++ RKV A + +R GP +       QP+ D +KL  K+ 
Sbjct: 6   IILGKILGLVLPLLICVAYLTLLERKVIAAMQQRKGPNVVGVFGLLQPLADGLKLLLKET 65

Query: 57  NV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMF 112
            V    +  IF    +     ++++   IP+    V+      L+ I  +  + + GI+ 
Sbjct: 66  IVPTRANSAIFILAPILTFMLSLVSWAVIPIDDGMVIADLNIGLLYILSVSSLGVYGIIT 125

Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFH 172
           +  SS + YA +G+ R+   +++ +V +G  I+ +    G+ +  +IV  Q+   W I  
Sbjct: 126 SGWSSNSKYAFLGSLRSAAQMVSYEVSIGLIIITVLMCAGSLNLTQIVRCQESM-WYI-- 182

Query: 173 LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAET 232
           +PL    + + I + A   + PFD+  A  E+  G  VE+      +  +     +    
Sbjct: 183 IPLFPLFVMFFISILAETNRSPFDLPEAEAELVAGYNVEYSAMGFALFFLGEYANMILMC 242

Query: 233 LFFSNIFLGGAVITTFSSPILNTLATLGVLL-IKQLAVLFVAILISTIFPRFTIDQAAKF 291
              + +FLGG +      P   TL    +   +K + +LFV I +   FPR+  DQ  + 
Sbjct: 243 SMCTILFLGGWLAPLNILPF--TLIPGSIWFGLKVVFLLFVFIWVRATFPRYRYDQLMRL 300

Query: 292 YWK 294
            WK
Sbjct: 301 GWK 303


>gi|6691423 NADH dehydrogenase subunit 1 [Lampetra fluviatilis]
           >gi|3122440|sp|O21069|NU1M_LAMFL NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431967|pir||T13811 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - river
           lamprey mitochondrion >gi|2340017|emb|CAA70719.1|
           (Y09528) NADH dehydrogenase subunit 1 [Lampetra
           fluviatilis] >gi|6523330|emb|CAB62214.1| (Y18683) NADH
           dehydrogenase subunit 1 [Lampetra fluviatilis]
           Length = 321
           
 Score = 79.6 bits (193), Expect = 4e-14
 Identities = 82/297 (27%), Positives = 132/297 (43%), Gaps = 24/297 (8%)

Query: 9   ILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NVT 59
           IL+L+    V F+ M + RK    +  R GP +       QPI D +KLF K+       
Sbjct: 10  ILVLMVLLAVAFLTM-VERKTLGYMQLRKGPNVVGFMGLLQPIADGVKLFLKEPVWPTAA 68

Query: 60  HGVIFDFGIVFALGATILALMFIPLG-SISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
              +F    + AL   +   MFIP+  SIS +     L++I  +  + +   + +  +S 
Sbjct: 69  SPALFIAAPIMALTLALSLWMFIPMPQSISTINL--TLLVILAISSLSVYASLGSGWASN 126

Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
           + YA IGA RA+   ++ +V LG  ++ L    G FS    +  Q+ H W  F L     
Sbjct: 127 SKYALIGALRAVAQTISYEVSLGLILLCLIILTGGFSLQAFIYTQE-HTW--FLLSSWPL 183

Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFAETLFFSN 237
           A  + +   A   + PFD+     E+  G  VE+ GG +      +++  LF  TL  + 
Sbjct: 184 AAMWFVSTLAETNRTPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILFMNTLT-AI 242

Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           +FLG           LN L  + V++ K   ++ + + I   +PRF  DQ     WK
Sbjct: 243 MFLG-----PLGPNNLNILPIINVMM-KATPLIILFLWIRASYPRFRYDQLMHLMWK 293


>gi|5835639 NADH dehydrogenase subunit 1 [Papio hamadryas]
           >gi|6685702|sp|Q9ZXY4|NU1M_PAPHA NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7520025|pir||T11506 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - baboon
           mitochondrion (fragment) >gi|4049476|emb|CAA76994.1|
           (Y18001) NADH dehydrogenase subunit 1 [Papio hamadryas]
           Length = 318
           
 Score = 79.6 bits (193), Expect = 4e-14
 Identities = 74/297 (24%), Positives = 133/297 (43%), Gaps = 22/297 (7%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK---KENV 58
           +L+L+ +T     F+ ++ RK+   +  R GP I       QP  D +KLF K   K + 
Sbjct: 6   LLLLIMSTLAAMAFLTLVERKLLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPST 65

Query: 59  THGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSS 117
           +  +++      AL  +I  L++ PL   + L  +   L+ I     + +  I+++  +S
Sbjct: 66  SSTILYITAP--ALAFSIALLLWTPLPMPNPLINFNLGLLFILATSSLTVYSILWSGWAS 123

Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
            + YA IGA RA+  +++ +V L   ++++    G+F+   ++  Q+ H W I  LP   
Sbjct: 124 NSNYALIGALRAVAQMISYEVTLSIILLSILLTSGSFNLNMLITTQE-HLWLI--LPSWP 180

Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
            A+ +     A   + PFD+M    E+  G  +E+      +  +   + +       + 
Sbjct: 181 LAMMWFTSTLAETNRTPFDLMEGESELVSGFNIEYSAGPFALFFMAEYMNIIMMNALTTT 240

Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           IFL G    T S  +  T  T+  LL+  L      + I   +PRF  DQ     WK
Sbjct: 241 IFL-GTFYPTHSPELFTTSFTIKTLLLTSL-----FLWIRAAYPRFRYDQLMHLLWK 291


>gi|5835332 NADH dehydrogenase subunit 1 [Rhinoceros unicornis]
           >gi|2499234|sp|Q96189|NU1M_RHIUN NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431950|pir||T11247 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
           greater Indian rhinoceros mitochondrion
           >gi|1666194|emb|CAA66001.1| (X97336) NADH subunit 1
           [Rhinoceros unicornis]
           Length = 318
           
 Score = 79.2 bits (192), Expect = 6e-14
 Identities = 73/296 (24%), Positives = 130/296 (43%), Gaps = 20/296 (6%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NV 58
           IL+L+    +   F+ ++ RKV   +  R GP I       QPI D IKLF K+    + 
Sbjct: 6   ILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAIKLFTKEPLQPST 65

Query: 59  THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
           +   +F    + AL   +   + +P+    +    G L ++  +  + +  I+++  +S 
Sbjct: 66  SSTSMFIIAPIMALTLALTMWVPLPMPHPLINMNLGVLFMLA-MSSLAVYSILWSGWASN 124

Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
           + YA IGA RA+   ++ +V L   ++++    G+F+   ++  Q+ H W IF  P    
Sbjct: 125 SKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQE-HLWLIF--PSWPL 181

Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
            + + I   A   + PFD+     E+  G  VE+      +  +     +     F + +
Sbjct: 182 TMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNAFTTIL 241

Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           FLG      F +P +  L T+    IK L +    + I   +PRF  DQ     WK
Sbjct: 242 FLG-----AFHNPYMPELYTVN-FTIKTLLLTISFLWIRASYPRFRYDQLMHLLWK 291


>gi|5834940 NADH dehydrogenase subunit 1 [Bos taurus]
           >gi|128632|sp|P03887|NU1M_BOVIN NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|66131|pir||QXBO1M NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - bovine
           mitochondrion >gi|12801|emb|CAA23997.1| (V00654) U.R.F.
           1 [Bos taurus] >gi|336431|gb|AAB59268.1| (J01394)
           protein 1; putative [Bos taurus]
           Length = 318
           
 Score = 78.8 bits (191), Expect = 8e-14
 Identities = 73/296 (24%), Positives = 131/296 (43%), Gaps = 20/296 (6%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK---KENV 58
           IL+L+    +   F+ ++ RKV   +  R GP +       QPI D IKLF K   +   
Sbjct: 6   ILMLIIPILLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADAIKLFIKEPLRPAT 65

Query: 59  THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
           +   +F    + ALG  +   + +P+    +    G L ++  +  + +  I+++  +S 
Sbjct: 66  SSASMFILAPIMALGLALTMWIPLPMPYPLINMNLGVLFMLA-MSSLAVYSILWSGWASN 124

Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
           + YA IGA RA+   ++ +V L   ++++    G+F+   ++  Q+   W I  LP    
Sbjct: 125 SKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFTLSTLITTQE-QMWLI--LPAWPL 181

Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
           A+ + I   A   + PFD+     E+  G  VE+      +  +     +    +F + +
Sbjct: 182 AMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNIFTAIL 241

Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           FLG     T  +P +  L T+    IK L +    + I   +PRF  DQ     WK
Sbjct: 242 FLG-----TSHNPHMPELYTIN-FTIKSLLLTMSFLWIRASYPRFRYDQLMHLLWK 291


>gi|5835318 NADH dehydrogenase subunit 1 [Polypterus ornatipinnis]
           >gi|2499233|sp|Q96182|NU1M_POLOR NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431934|pir||T11454 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
           Polypterus ornatipinnis mitochondrion
           >gi|1663750|gb|AAC60305.1| (U62532) NADH dehydrogenase
           subunit 1 [Polypterus ornatipinnis]
           Length = 319
           
 Score = 78.8 bits (191), Expect = 8e-14
 Identities = 87/308 (28%), Positives = 137/308 (44%), Gaps = 32/308 (10%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           ++ +I+N ++ ++           + RK+   +  R GP I       QPI D +KLF K
Sbjct: 3   LITLIINPLMYIIPILLAMAFLTLVERKMLGYMQLRKGPNIVGPYGLLQPIADGVKLFIK 62

Query: 55  ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLIL-ITFLLEIPMLG- 109
              K + +   +F      AL  T+  +++IPL    +  A  DL L I F+L +  L  
Sbjct: 63  EPVKPSTSSPTLFLLTPTLAL--TLALILWIPL---PMPLALTDLNLTILFILAVSSLSV 117

Query: 110 --IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
             I+ +  +S + YA IGA RA+   ++ +V LG  I++L  + G F+      AQ+   
Sbjct: 118 YSILGSGWASNSKYALIGALRAVAQTISYEVTLGLIIISLIMFTGGFTLTTFNTAQEA-V 176

Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
           W I  LP    A  + I   A   + PFD+     E+  G  VE+ G          A+ 
Sbjct: 177 WLI--LPAWPLAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGG-------PFALF 227

Query: 228 LFAETLFFSNIFLGGAVIT-TFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
             AE   ++NI L  A+ T  F  P  NTL       IK + +  + + +   +PRF  D
Sbjct: 228 FLAE---YTNILLMNALSTILFLGPSFNTLTINLNWAIKTMILASMFLWVRASYPRFRYD 284

Query: 287 QAAKFYWK 294
           Q     WK
Sbjct: 285 QLMHLVWK 292


>gi|9801571 NADH dehydrogenase subunit 1 [Lama pacos]
           >gi|9558344|emb|CAC00502.1| (Y19184) NADH1 [Lama pacos]
           Length = 319
           
 Score = 78.8 bits (191), Expect = 8e-14
 Identities = 79/298 (26%), Positives = 132/298 (43%), Gaps = 24/298 (8%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-NVTH 60
           IL L+    +   F+ ++ RKV   +  R GP +       QPI D IKLF K+      
Sbjct: 6   ILTLIVPILLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADAIKLFTKEPLRPAT 65

Query: 61  GVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLIL-ITFLLEIPMLG---IMFAAMS 116
             I  F +   L  T+   M+IPL   S+ +   D+ L + F+L +  L    I+++  +
Sbjct: 66  SSITMFILAPILALTLALTMWIPL---SMPQPLVDMNLGVLFMLAMSSLAVYSILWSGWA 122

Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
           S + YA IGA RA+   ++ +V L   ++++    G+F+   ++  Q+ H W I  +P  
Sbjct: 123 SNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQE-HMWMI--IPAW 179

Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
             A+ + I   A   + PFD+     E+  G  VE+      +  +     +     F +
Sbjct: 180 PLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFMAEYANIIMMNAFTT 239

Query: 237 NIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
            +F G      F +P +  L T   +L K L +    + I   +PRF  DQ     WK
Sbjct: 240 ILFFG-----AFHNPYMPELYTANFVL-KTLLLTVTFLWIRASYPRFRYDQLMHLLWK 291


>gi|5835477 NADH dehydrogenase subunit 1 [Balanoglossus carnosus]
           >gi|7431924|pir||T11127 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - acorn worm mitochondrion
           >gi|3065687|gb|AAD11950.1| (AF051097) NADH dehydrogenase
           subunit 1 [Balanoglossus carnosus]
           Length = 322
           
 Score = 78.4 bits (190), Expect = 1e-13
 Identities = 76/305 (24%), Positives = 136/305 (43%), Gaps = 28/305 (9%)

Query: 4   VIVNAILILLYATF-VGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK-- 54
           +I++A+++++     V F+ +G  RK+   +  R GP +       QPI D +KLF K  
Sbjct: 6   IIIHALILIVPVLLAVAFITLGE-RKIIGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEP 64

Query: 55  -KENVTHGVIFDFGIVFALGATILALMFIPL----GSISVLRAYGDLILITFLLEIPMLG 109
            K    +  +F    + AL   ++    IPL     SI++      +ILI  L  + +  
Sbjct: 65  VKPTTANPQLFILCPILALAIALVLWTPIPLPFQFSSINL-----SIILILALSSLAVYS 119

Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
           I+ +  SS + YA IG+ RA+   ++ +V LG  ++ +    G+F+   IV +Q    +S
Sbjct: 120 ILGSGWSSNSKYALIGSIRAVAQTISYEVSLGLIVLCVVILAGSFNLSTIVDSQD---FS 176

Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
            F L     A  + +   A   + PFD+     E+  G  VE+ G    +  +     + 
Sbjct: 177 WFILTCTPIAFIWYVSTLAETNRTPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNII 236

Query: 230 AETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAA 289
              +  + +FLGG         IL + A   ++ +K   +  + + +   +PRF  DQ  
Sbjct: 237 FMNVLSTVLFLGGG-----GPSILFSWAQTPIIALKATFLSLLFLWVRASYPRFRYDQLM 291

Query: 290 KFYWK 294
              WK
Sbjct: 292 HLAWK 296


>gi|5836073 NADH dehydrogenase subunit 1 [Raja radiata] >gi|7431929|pir||T11287
           NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
           Raja radiata mitochondrion >gi|4406270|gb|AAD19929.1|
           (AF106038) NADH dehydrogenase subunit 1 [Raja radiata]
           Length = 324
           
 Score = 78.4 bits (190), Expect = 1e-13
 Identities = 80/307 (26%), Positives = 139/307 (45%), Gaps = 23/307 (7%)

Query: 1   MLRVIVNAI---LILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIK 50
           ML+ I+  I   L  +    +   F+ ++ RK+   +  R GP +       QPI D +K
Sbjct: 1   MLKTIITQIIHPLTYIIPVLLATAFLTLVERKILGYMQLRKGPNVVGPYGLLQPIADGLK 60

Query: 51  LFGKKE-NVTHGVIFDFGIVFALGATILALMFIPLG-SISVLRAYGDLILITFLLEIPML 108
           LF K+    +H   F F        T+  LM++PL    S+L     L+ I  +  + + 
Sbjct: 61  LFTKEPIRPSHSSHFLFLATPTAALTLALLMWMPLPLPHSILNLNLGLLFILAISSLTVY 120

Query: 109 GIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
            I+ +  +S + YA +GA RA+   ++ +V LG  +++L    G F+ +     Q+   W
Sbjct: 121 TILGSGWASNSKYALMGALRAVAQTISYEVTLGLILLSLVIMAGGFTLHTFNFTQETI-W 179

Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIG 227
            +  +P    A+ + I   A   + PFD+     E+  G  +E+ GG +   L  +++  
Sbjct: 180 LL--IPAWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNIEYAGGPFALFLLAEYSNI 237

Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
           L   TL   ++ L   V    S P ++TL+    L+IK   +  + + I   +PRF  DQ
Sbjct: 238 LMMNTL---SVILFMGVSYNPSLPQISTLS----LMIKATMLTILFLWIRASYPRFRYDQ 290

Query: 288 AAKFYWK 294
                WK
Sbjct: 291 LMHLVWK 297


>gi|5835889 NADH dehydrogenase subunit 1 [Ceratitis capitata]
           >gi|5101677|emb|CAB45100.1| (AJ242872) NADH
           dehydrogenase (ubiquinone) chain 1 [Ceratitis capitata]
           Length = 343
           
 Score = 78.4 bits (190), Expect = 1e-13
 Identities = 76/299 (25%), Positives = 133/299 (44%), Gaps = 35/299 (11%)

Query: 10  LILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFGKKEN---VT 59
           LIL+    V   F+ ++ RKV   +  R GP       I QP  D IKLF K++    ++
Sbjct: 11  LILVICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLS 70

Query: 60  HGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGI---MFAAMS 116
           + + + F  +F+L  +++A + IPL     ++ +   + I F L    LG+   M A  S
Sbjct: 71  NYISYYFSPIFSLFISLIAWLCIPL----FIKLFSFNLGILFFLCCTSLGVYTVMIAGWS 126

Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
           S + YA +G  RA+   ++ +V +   +++     G+++  +    Q    + IF  P+ 
Sbjct: 127 SNSNYALLGGLRAVAQTISYEVSMALILLSFVFLIGSYNILDFYYYQSYIWFLIFLFPI- 185

Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFG-GKYLGILQVQHAIGLFAETLFF 235
             ++ +  +  A   + PFD      E+  G  +E+  G +  I   ++A  LF   LF 
Sbjct: 186 --SLVWFCICLAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFMAEYASILFMSMLF- 242

Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           S IFLG  + +              +  +K   + FV I +    PRF  D+     WK
Sbjct: 243 SVIFLGCDLFSL-------------MFYLKLTFISFVFIWVRGTLPRFRYDKLMYLAWK 288


>gi|11386119 NADH dehydrogenase subunit 1 [Pteropus dasymallus]
           >gi|11231067|dbj|BAB18172.1| (AB042770) NADH
           dehydrogenase subunit 1 [Pteropus dasymallus]
           Length = 318
           
 Score = 78.4 bits (190), Expect = 1e-13
 Identities = 82/303 (27%), Positives = 136/303 (44%), Gaps = 23/303 (7%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           M+ ++   + ILL   F+      I RKV   +  R GP +       QP+ D +KLF K
Sbjct: 3   MINLLTMIVPILLAVAFLTL----IERKVLGYMQLRKGPNVVGPYGLLQPMADALKLFTK 58

Query: 55  KENVTHGVIFDFGIVFALGATILAL-MFIPLGSISVLRAYGDLILITFLLE-IPMLGIMF 112
           +            I+  + A  LAL M+IPL     L      +L    +  + +  I++
Sbjct: 59  EPLRPLASSPSMFIIAPIMALTLALTMWIPLPMPHPLINMNLAVLFMLAMSSLAVYSILW 118

Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFH 172
           +  +S + YA IGA RA+   ++ +V L   ++++    G+FS   +++ Q+ H W +  
Sbjct: 119 SGWASNSKYALIGAMRAVAQTISYEVTLAIILLSVLLLSGSFSLSTLIITQE-HAWLM-- 175

Query: 173 LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFAE 231
           L     A+ + I   A   + PFD+     E+  G  VE+ GG +      ++A  +   
Sbjct: 176 LSSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFMAEYANIIMMN 235

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
           TL  + I   GA    F +P+   L T+  L+IK L +    + I   +PRF  DQ    
Sbjct: 236 TL--TAILFTGA----FHNPLTPELYTIN-LIIKTLLLTVFFLWIRASYPRFRYDQLMHL 288

Query: 292 YWK 294
            WK
Sbjct: 289 LWK 291


>gi|5835402 NADH dehydrogenase subunit 1 [Ceratotherium simum]
           >gi|3122438|sp|O03850|NU1M_CERSI NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|2052152|emb|CAA69006.1|
           (Y07726) NADH-ubiquinone oxidoreductase subunit I
           [Ceratotherium simum]
           Length = 318
           
 Score = 78.0 bits (189), Expect = 1e-13
 Identities = 73/296 (24%), Positives = 130/296 (43%), Gaps = 20/296 (6%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NV 58
           IL+L+    +   F+ ++ RKV   +  R GP I       QPI D IKLF K+    + 
Sbjct: 6   ILLLVIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAIKLFTKEPLQPST 65

Query: 59  THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
           +   +F    + AL   +   + +P+    +    G L ++  +  + +  I+++  +S 
Sbjct: 66  SSTTMFIIAPILALTLALTMWIPLPMPHPLINMNLGVLFMLA-MSSLAVYSILWSGWASN 124

Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
           + YA IGA RA+   ++ +V L   ++++    G+F+   ++  Q+ H W IF  P    
Sbjct: 125 SKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQE-HLWLIF--PSWPL 181

Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
           A+ + I   A   + PFD+     E+  G  VE+      +  +     +     F + +
Sbjct: 182 AMMWFISTLAETNRAPFDLAEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNAFTTIL 241

Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           FLG      F +P +  L T+     K L +    + I   +PRF  DQ     WK
Sbjct: 242 FLG-----AFHNPHMPELYTIN-FTTKTLLLTTSFLWIRASYPRFRYDQLMHLLWK 291


>pir||D72620 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PAB1393
           [similarity] - Aeropyrum pernix (strain K1)
           >gi|5105104|dbj|BAA80418.1| (AP000061) 383aa long
           hypothetical NADH dehydrogenase (ubiquinone) chain 1
           [Aeropyrum pernix]
           Length = 383
           
 Score = 77.6 bits (188), Expect = 2e-13
 Identities = 79/320 (24%), Positives = 135/320 (41%), Gaps = 27/320 (8%)

Query: 12  LLYATFVGFMFMGII-----RKVTARVHRRIGPPIYQP--------IIDTIKLFGKKENV 58
           LL   F G + + I+     RK  ARV RRIGP    P        + D ++   ++  +
Sbjct: 27  LLILGFGGALLIAIVAVWFERKAAARVQRRIGPYWASPRLGGLLHLVADMMRYMFQQVII 86

Query: 59  THGV-IFDFGI--VFALGATILALMFIPLGSISV-------LRAYGDLILITFLLEIPML 108
              V  F F +  +  +  +IL    +PL +          L  Y  L+L   +  +P +
Sbjct: 87  PRTVDYFPFLVAPIVGMAVSILPFAVVPLTANPSYWPLPPGLMEYS-LLLALAISTLPPI 145

Query: 109 GIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
            ++ A  ++ NP+  +G  R    +LA ++    +++A A   G+F+  EIV AQ    W
Sbjct: 146 FLIVAGWAANNPFTIVGGVREAFIILAYELIAILSLLAPAITVGSFNIVEIVQAQGFFKW 205

Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
            I   P  LA +A  I +       PF+I  +  E+  GP  E+ G    +      +  
Sbjct: 206 FIILNP--LAFLAAVIAIAMSTSAFPFEIPESEPEVVAGPFTEYSGILYALNMGGAYMRR 263

Query: 229 FAETLFFSNIFLGG-AVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
           FA +L  S + LGG   +      ++  L    V++ K   V      +  ++ R+ +DQ
Sbjct: 264 FAFSLIASLVLLGGWYPVVPGEGVVMGYLLPSLVVVAKAALVTLAISFLRAVYGRYRLDQ 323

Query: 288 AAKFYWKWPTIIAALGAILA 307
           A    W+    +  L  +LA
Sbjct: 324 ALDLAWRLVLPLTLLAILLA 343


>gb|AAF61231.1|AF234899_1 (AF234899) NADH dehydrogenase I [Haemulon plumieri]
           Length = 324
           
 Score = 77.6 bits (188), Expect = 2e-13
 Identities = 79/305 (25%), Positives = 141/305 (45%), Gaps = 26/305 (8%)

Query: 4   VIVNAI--LILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           VIV+ I  L L+    +   F+ ++ RKV   +  R GP +       QPI D +KLF K
Sbjct: 5   VIVHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64

Query: 55  ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
              + + +  ++F    +  L   +     +PL S+ ++     ++ I  L  + +  I+
Sbjct: 65  EPVRPSTSSTLLFLLATMLTLSLALTLWAPMPL-SMPMMDLNLGILFILALSNLTVYSIL 123

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
            +  +S + YA IGA RA+  + +++V LG  +     + G F+   + +AQ+   W I 
Sbjct: 124 GSGWASNSKYAFIGAMRAVAQMFSVEVSLGLILFGAIIFTGAFTLQTLNVAQE-SVWLI- 181

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFA 230
            LP    A  + +   A   + PFD+     E+  G  VE+ GG +      ++A  L  
Sbjct: 182 -LPAWPLAAMWYVSTFAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL-ISTIFPRFTIDQAA 289
            TL  + +F+G +      +P+   L  + +++  + A+L VA L +   +PRF  DQ  
Sbjct: 241 NTL-SATLFMGAS-----HAPLYPELTAINLMI--KAALLSVAFLWVRASYPRFRYDQLM 292

Query: 290 KFYWK 294
              WK
Sbjct: 293 HLIWK 297


>gi|5835304 NADH dehydrogenase subunit 1 [Arbacia lixula]
           >gi|7431902|pir||T11793 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - sea urchin (Arbacia lixula)
           mitochondrion >gi|1480388|emb|CAA56608.1| (X80396) NADH1
           [Arbacia lixula]
           Length = 323
           
 Score = 77.3 bits (187), Expect = 2e-13
 Identities = 77/306 (25%), Positives = 130/306 (42%), Gaps = 21/306 (6%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK---KENV 58
           ++  L    +   F+ ++ RKV   +  R GP +       QP  D +KLF K   K + 
Sbjct: 10  LITFLVPVLLAVAFLTLVERKVLGYMQFRKGPKVVGPYGLLQPFADGLKLFIKETLKPSS 69

Query: 59  THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
               +F    V  L   +L   F+P+ S   L     L+L+  L  + +  I+ +  +S 
Sbjct: 70  ASPYLFFASPVLFLTLALLLWNFMPVTS-PALDLQLSLLLVLGLSSLSVYAILGSGWASN 128

Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
           + Y+ IGA RA+   ++ ++ L    V++     +F+   IV A +   +S+  LPL   
Sbjct: 129 SKYSLIGAIRAVAQTISYEISLALIFVSIILLVSSFNLIYIVTAGEFSWFSMSCLPLFYI 188

Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
            +   +   A   + PFD+     EI     VE+ G    +  +     +    LF   +
Sbjct: 189 WLVSTL---AETNRAPFDLTEGESEIVSAINVEYAGGPFALFFIAEYANIILMNLFSVVL 245

Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK--WP 296
           FLGG +    + P+      L +L IK   ++F  + +   +PRF  DQ     WK   P
Sbjct: 246 FLGGTLPINNNYPL-----NLLLLGIKTTLLVFFFLWVRAAYPRFRYDQLMFLTWKSYLP 300

Query: 297 TIIAAL 302
             I AL
Sbjct: 301 FAIGAL 306


>sp|O78694|NU1M_SAGOE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399714|dbj|BAA32097.1|
           (AB010972) NADH dehydrogenase subunit 1 [Saguinus
           oedipus]
           Length = 318
           
 Score = 77.3 bits (187), Expect = 2e-13
 Identities = 82/304 (26%), Positives = 137/304 (44%), Gaps = 36/304 (11%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKENV-TH 60
           +L+++ +  V   F+ +  RKV   +  R GP I       QPI D +KLF K+  + T 
Sbjct: 6   LLVVILSALVAMAFLTLTERKVLGYMQFRKGPNIVGPYGTLQPIADAMKLFTKEPLLPTS 65

Query: 61  GVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGN 119
                + I   L  +I  L++ PL     L  +   L+ I     + +  I+++  +S +
Sbjct: 66  STSTLYLIAPTLALSISLLLWTPLPMPYPLMNFNLGLLFILATSSLAVYSILWSGWASNS 125

Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
            YA IGA RA+   ++ +V L   ++++    G+F+   ++  Q+ H W +F  P    A
Sbjct: 126 NYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFNLQSLITTQE-HSWLLF--PSWPLA 182

Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF---- 235
           + + I   A   + PFD+     E+  G              +++A G FA  LFF    
Sbjct: 183 MMWFISTLAETNRAPFDLTEGESELVSG------------FNIEYAAGSFA--LFFMAEY 228

Query: 236 SNIFLGGAVITT-FSSPILNTLA----TLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
            NI +  A+ TT F +   NT A    T+   + K L +  + + I T +PRF  DQ   
Sbjct: 229 MNIIMMNALTTTIFLAAPHNTAAPETYTIN-FMTKTLLLTTLFLWIRTAYPRFRYDQLMH 287

Query: 291 FYWK 294
             WK
Sbjct: 288 LLWK 291


>gi|5835155 NADH dehydrogenase subunit 1 [Gorilla gorilla]
           >gi|6045104|dbj|BAA85277.1| (D38114) NADH dehydrogenase
           subunit 1 (ND1) [Gorilla gorilla]
           Length = 318
           
 Score = 77.3 bits (187), Expect = 2e-13
 Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 22/297 (7%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-NVTH 60
           +L+L+    +   F+ +  RK+   +  R GP +       QP  D +KLF K+    + 
Sbjct: 6   LLLLIVPILIAMAFLMLTERKILGYMQLRKGPNVVGPYGLLQPFADAMKLFTKEPLKPST 65

Query: 61  GVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGN 119
             I  +     L  TI  L++ PL   + L      L+ I     + +  I+++  +S +
Sbjct: 66  STITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSILWSGWASNS 125

Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
            YA IGA RA+   ++ +V L   +++     G+F+   ++M Q+ H W +  LP    A
Sbjct: 126 NYALIGALRAVAQTISYEVTLAIILLSTLLMNGSFNLSTLIMTQE-HLWLL--LPTWPLA 182

Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
           + + I   A   + PFD+     E+  G  +E+    L +  +   + +       + IF
Sbjct: 183 MMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPLALFFMAEYMNIIMMNTLTTMIF 242

Query: 240 LGGAVITTFS--SPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           LG    TT++  SP L T+      + K L +  + + I T +PRF  DQ     WK
Sbjct: 243 LG----TTYNAHSPELYTVC----FITKTLLLTSLFLWIRTAYPRFRYDQLMHLLWK 291


>gb|AAG28190.1|AF304201_1 (AF304201) NADH1 [Sus scrofa]
           Length = 318
           
 Score = 77.3 bits (187), Expect = 2e-13
 Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 21/300 (7%)

Query: 5   IVNAI-LILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKEN 57
           ++NA+ LI+     V F+ + + RKV   +  R GP +       QPI D +KLF K+  
Sbjct: 3   MINALSLIIPILLAVAFLTL-VERKVLGYMQLRKGPNVVGPYGLLQPIADALKLFTKEPL 61

Query: 58  VTHGVIFDFGIVFALGATILAL-MFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMFAAM 115
                 F   I+  + A  LAL M+IPL     ++     ++ +  +  + +  I+++  
Sbjct: 62  RPATSSFSMFIIAPILALSLALTMWIPLPMPYPLINMNLGVLFMLAMSSLAVYSILWSGW 121

Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF-HLP 174
           +S + YA IGA RA+   ++ +V L   ++++    G+++   ++  Q+ H W IF   P
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSYTLSTLITTQE-HIWMIFTSWP 180

Query: 175 LLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLF 234
           L   A+ + I   A   + PFD+     E+  G  VE+      +  +     +     F
Sbjct: 181 L---AMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFMAEYANIIMMNAF 237

Query: 235 FSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
            + +FLG     T   P    L T+  +L K LA+    + I   +PRF  DQ     WK
Sbjct: 238 TAILFLG-----TSHDPHTPELYTINFVL-KTLALTITFLWIRASYPRFRYDQLMHLLWK 291


>sp|P92718|NU1M_PONPP NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|1743309|emb|CAA66304.1|
           (X97718) NADH1 [Pongo pygmaeus pygmaeus]
           Length = 318
           
 Score = 76.9 bits (186), Expect = 3e-13
 Identities = 74/300 (24%), Positives = 129/300 (42%), Gaps = 21/300 (7%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-N 57
           ++N +L+ +         M   RK+      R GP I       QP  D +KLF K+   
Sbjct: 3   VINLLLLTMSILIAMAFLMLTERKILGYTQLRKGPNIVGPCGLLQPFADALKLFTKEPLK 62

Query: 58  VTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMS 116
            +   I  + +  AL  TI  L++ PL   + L      L+ I     + +  I+++  +
Sbjct: 63  PSTSTIILYIVSPALALTIALLLWTPLPMPNPLINLNLGLLFILATSSLTVYSILWSGWA 122

Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
           S + YA IG  RA+   ++ ++ L   ++++    G+F+   ++  Q+ H W +  LP  
Sbjct: 123 SNSNYALIGTLRAVAQTISYEITLALILLSVLLMSGSFNLSTLITTQE-HSWLL--LPSW 179

Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
             A+ + I   A   + PFD+     E+  G   E+      +  +     +       +
Sbjct: 180 PLALMWFISTLAETNRAPFDLTEGESELVSGFNTEYAAGPFALFFMAEYTNIILMNALTA 239

Query: 237 NIFLGGAVITTFS--SPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
            IFLG    TTF+  SP L+T     +  IK L +  + + I + +PRF  DQ     WK
Sbjct: 240 MIFLG----TTFNIHSPELHTT----LFTIKTLLLTSLFLWIRSTYPRFRYDQLMHLLWK 291


>gi|5835360 NADH dehydrogenase subunit 1 [Macropus robustus]
           >gi|2829762|sp|P92659|NU1M_MACRO NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431957|pir||T11428 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
           wallaroo mitochondrion >gi|1850862|emb|CAA71536.1|
           (Y10524) NADH dehydrogenase subunit 1 [Macropus
           robustus]
           Length = 318
           
 Score = 76.9 bits (186), Expect = 3e-13
 Identities = 75/296 (25%), Positives = 132/296 (44%), Gaps = 20/296 (6%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKK--ENVT 59
           +L+ +    +   F+ ++ RKV   +  R GP I       QPI D +KLF K+    +T
Sbjct: 6   LLLYIVPILLAVAFLTLVERKVLGYMQFRKGPNIVGPYGLLQPIADAVKLFTKEPLRPLT 65

Query: 60  HGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSG 118
             V   F I   L  T+   ++ PL     L      L+ I  L  + +  I+++  +S 
Sbjct: 66  SSVSM-FIIAPILALTLALTIWTPLPMPHALIDLNLGLLFILSLSGLSVYSILWSGWASN 124

Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
           + YA IGA RA+   ++ +V L   ++++    G+F+   +++ Q+     +   PL   
Sbjct: 125 SKYALIGALRAVAQTISYEVTLAIILLSIMLINGSFTLKNLIITQENMWLIVATWPL--- 181

Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
           A+ + I   A   + PFD+     E+  G  VE+      +  +     + A     + +
Sbjct: 182 AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIMAMNAMTAIL 241

Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           FLG ++    S   LNTL+     ++K L + F+ + I   +PRF  DQ     WK
Sbjct: 242 FLGSSLNHNLSH--LNTLS----FMLKTLFLTFMFLWIRASYPRFRYDQLMHLLWK 291


>sp|O78710|NU1M_PERGU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3401925|dbj|BAA32119.1|
           (AB011227) NADH dehydrogenase subunit 1 [Perameles
           gunnii]
           Length = 318
           
 Score = 76.9 bits (186), Expect = 3e-13
 Identities = 74/298 (24%), Positives = 129/298 (42%), Gaps = 17/298 (5%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-N 57
           I+N +L ++           I RKV   +  R GP I       QP  D +KLF K+   
Sbjct: 3   IINLLLYIVPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAVKLFTKEPLR 62

Query: 58  VTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMFAAMS 116
                I  F I   L  T+   +++PL    S++     L+ I  L  + +  I+++  +
Sbjct: 63  PLTSSISMFIIAPILALTLALTIWVPLPMPYSLIDLNMGLLFILALSGLSVYSILWSGWA 122

Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
           S + YA IGA RA+   ++ +V L   ++++    G+F+   ++  Q+     +   PL 
Sbjct: 123 SNSKYALIGALRAVAQTISYEVTLAIILLSIMLINGSFTLKTLITTQENMWLIVTTWPL- 181

Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
             A+ + I   A   + PFD+     E+  G  VE+      +  +     +       +
Sbjct: 182 --AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIIVMNAMTT 239

Query: 237 NIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
            +FLG ++   F+   LNTL+     ++K L +  V + I   +PRF  DQ     WK
Sbjct: 240 ILFLGTSINQNFTH--LNTLS----FMMKTLTLTIVFLWIRASYPRFRYDQLMHLLWK 291


>gi|5836031 NADH dehydrogenase subunit 1 [Hippopotamus amphibius]
           >gi|6647645|sp|Q9ZZZ1|NU1M_HIPAM NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|4127864|emb|CAA09428.1|
           (AJ010957) NADH1 [Hippopotamus amphibius]
           Length = 318
           
 Score = 76.5 bits (185), Expect = 4e-13
 Identities = 76/299 (25%), Positives = 132/299 (43%), Gaps = 19/299 (6%)

Query: 5   IVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE- 56
           I+N  L+L+    +   F+ ++ RK+   +  R GP I       QP  D IKLF K+  
Sbjct: 3   IINT-LMLVAPILLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPL 61

Query: 57  NVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMFAAM 115
             +   +  F I   L  T+   M+IPL     ++     ++ +  +  + +  I+++  
Sbjct: 62  RPSTSSVSMFIIAPILALTLALTMWIPLPMPYPLINMNLGVLFMLAMSSLAVYSILWSGW 121

Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
           +S + YA IGA RA+   ++ +V L   ++++    G+F+   ++  Q+   W IF  P 
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSILLMNGSFTLSTLITTQE-KLWLIF--PS 178

Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
              A+ + I   A   + PFD+     E+  G  VE+      +  +   I +     F 
Sbjct: 179 WPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFMAEYINIIMMNAFT 238

Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           + +FLG     T  +P L  L T+    IK L +    + I   +PRF  DQ     WK
Sbjct: 239 TVLFLG-----TCYNPYLPELYTIN-FTIKTLLLTMSFLWIRASYPRFRYDQLMHLLWK 291


>gi|11465884 NADH dehydrogenase subunit 1 [Ochromonas danica]
           >gi|10505217|gb|AAG18399.1|AF287134_24 (AF287134) NADH
           dehydrogenase subunit 1 [Ochromonas danica]
           Length = 325
           
 Score = 76.5 bits (185), Expect = 4e-13
 Identities = 72/301 (23%), Positives = 125/301 (40%), Gaps = 16/301 (5%)

Query: 4   VIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKEN 57
           +++  +LI+L        F    RK+   +HRR GP +       QP+ D  KLF K+  
Sbjct: 6   ILIKILLIILPLLISVAYFTLAERKILGAIHRRRGPNVVGVYGLLQPLSDGFKLFVKETV 65

Query: 58  V---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITF-LLEIPMLGIMFA 113
           +    + VIF    +     +++    IP    + L      IL  F +  + + G++ +
Sbjct: 66  IPSSANKVIFIISPMIFFVVSLMGWAIIPFDKYAYLADMNIGILYLFGVSSLGVYGVVMS 125

Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHL 173
             SS + YA +GA R+   +++ +V +GF I+++    G+F    I+  Q+   + I   
Sbjct: 126 GWSSNSKYAFLGALRSTAQMVSYEVSIGFIIISIVLCCGSFELQTIISCQKNVWFVIPFF 185

Query: 174 PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETL 233
           PL L      +   A   + PFD+  A  E+  G  VE+      +  +     + + + 
Sbjct: 186 PLFLMFFTSAL---AETNRHPFDLPEAEAELVSGYNVEYSAMGFALFSLGEYSNMLSMSA 242

Query: 234 FFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
               +F GG +       IL      GV  I    +L+V        PR+  DQ     W
Sbjct: 243 INVILFFGGWLAPLSFFDILPGSFWFGV-KISFFVILYV--WARAALPRYRYDQLMNIGW 299

Query: 294 K 294
           K
Sbjct: 300 K 300


>sp|O78705|NU1M_MACRU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3401915|dbj|BAA32114.1|
           (AB011222) NADH dehydrogenase subunit 1 [Macropus rufus]
           Length = 318
           
 Score = 76.1 bits (184), Expect = 5e-13
 Identities = 77/299 (25%), Positives = 132/299 (43%), Gaps = 19/299 (6%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK--E 56
           I+N +L ++           + RKV   +  R GP I       QPI D IKLF K+   
Sbjct: 3   IINLLLYIVPILLAVAFLTLVERKVLGYMQFRKGPNIVGPYGLLQPIADGIKLFTKEPLR 62

Query: 57  NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAM 115
            +T  V   F I   L  T+   ++ PL     L      L+ I  L  + +  I+++  
Sbjct: 63  PLTSSVSM-FIIAPILALTLALTIWTPLPMPHTLIDLNLGLLFILSLSGLSVYSILWSGW 121

Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
           +S + YA IGA RA+   ++ +V L   ++++    G+F+   +++ Q+     +   PL
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSIMLINGSFTLKNLLITQENMWLIVSTWPL 181

Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
              A+ + I   A   + PFD+     E+  G  VE+      +  +     + A     
Sbjct: 182 ---AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIMAMNAMT 238

Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           + +FLG ++   FS   L+TL+     ++K L + F+ + I   +PRF  DQ     WK
Sbjct: 239 AILFLGSSLNHNFSH--LSTLS----FMLKTLFLTFMFLWIRASYPRFRYDQLMYLLWK 291


>gi|5835127 NADH dehydrogenase subunit 1 [Pan troglodytes]
           >gi|6045095|dbj|BAA85268.1| (D38113) NADH dehydrogenase
           subunit 1 [Pan troglodytes]
           Length = 318
           
 Score = 76.1 bits (184), Expect = 5e-13
 Identities = 78/305 (25%), Positives = 130/305 (42%), Gaps = 20/305 (6%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-NVTH 60
           +L+L+    +   F+ +  RK+   +  R GP I       QP  D +KLF K+    + 
Sbjct: 6   LLLLIVPILIAMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPST 65

Query: 61  GVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGN 119
             I  +     L  TI  L++ PL   + L      L+ I     + +  I+++  +S +
Sbjct: 66  STITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSILWSGWASNS 125

Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
            YA IGA RA+   ++ +V L   +++     G+F+   +V  Q+ H W I  LP    A
Sbjct: 126 NYALIGALRAVAQTISYEVTLAIILLSTLLMSGSFNLSTLVTTQE-HLWLI--LPTWPLA 182

Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
           + + I   A   + PFD+     E+  G  +E+      +  +   + +       + IF
Sbjct: 183 MMWFISTLAETNRTPFDLTEGESELVSGFNIEYAAGPFALFFMAEYMNIIMMNTLTATIF 242

Query: 240 LGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK--WPT 297
           L GA   T S  +  T      LL+  L      + I T +PRF  DQ     WK   P 
Sbjct: 243 L-GATYNTHSPELYTTYFVTKALLLTSL-----FLWIRTAYPRFRYDQLMHLLWKNFLPL 296

Query: 298 IIAAL 302
            +A+L
Sbjct: 297 TLASL 301


>gb|AAF66626.1| (AF142996) NADH dehydrogenase subunit 1 [Pteronotus davyi]
           Length = 302
           
 Score = 76.1 bits (184), Expect = 5e-13
 Identities = 73/303 (24%), Positives = 134/303 (44%), Gaps = 23/303 (7%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           ++ ++   I ILL   F+      I RK+   +  R GP +       QPI D +KLF K
Sbjct: 3   LINLLAMIIPILLAVAFLTL----IERKILGYMQLRKGPNVVGPYGLLQPIADAVKLFTK 58

Query: 55  K--ENVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIM 111
                +T  +   F I   L  T+   M+IPL     ++      + +  +  + +  I+
Sbjct: 59  DPLRPLTSSITM-FIIAPILALTLALTMWIPLPMPYPLINMNLSELFMLAMSSLAVYAIL 117

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
           ++  +S + YA IGA RA+   ++ +V L   ++++    G+++   +++ Q+ + W I 
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSYTLSTLIITQE-YTWLI- 175

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
            +P    A+ + I   A   + PFD+     E+  G  VE+ G    +  +     +   
Sbjct: 176 -IPACPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMM 234

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
               + +FLG      +++PI+  L T    +IK L +    + I   +PRF  DQ    
Sbjct: 235 NALTTILFLGA-----YNNPIMPELYTTN-FMIKTLLLTTFFLWIRASYPRFRYDQLMHL 288

Query: 292 YWK 294
            WK
Sbjct: 289 LWK 291


>gi|5834968 NADH dehydrogenase subunit 1 [Paracentrotus lividus]
           >gi|128647|sp|P12772|NU1M_PARLI NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431898|pir||A34284 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - sea
           urchin (Paracentrotus lividus) mitochondrion
           >gi|854686|gb|AAA68133.1| (J04815) NADH dehydrogenase
           subunit 1 [Paracentrotus lividus]
           >gi|7322052|gb|AAA65506.2| (M37162) NADH dehydrogenase
           [Paracentrotus lividus]
           Length = 323
           
 Score = 75.7 bits (183), Expect = 7e-13
 Identities = 76/311 (24%), Positives = 138/311 (43%), Gaps = 20/311 (6%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK---KENV 58
           +L  L    +   F+ ++ RKV   +  R GP I       QP  D +KLF K   K + 
Sbjct: 10  LLSFLVPVLLAVAFLTLVERKVLGYMQFRKGPNIVGPYGLLQPFADGLKLFIKETLKPST 69

Query: 59  THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
               +F    +  +   +L    +P+ +   L     L+L+  L  + +  I+ +  ++ 
Sbjct: 70  ASPYLFFLSPLLFMALALLLWNLMPVHT-PTLNFQLSLLLVLGLSSLSVYAILGSGWAAN 128

Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
           + Y+ IGA RA+   ++ ++ L   +++L     +F+   I+ AQ+   +++  LPL   
Sbjct: 129 SKYSLIGAIRAVAQTISYEISLALILLSLIIITSSFNLTYIMNAQEFSWFALSCLPLF-- 186

Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
              + +   A   + PFD+     EI  G  VE+ G    +  +     +    LF   I
Sbjct: 187 -YIWFVSTLAETNRAPFDLTEGESEIVSGYNVEYAGGPFALFFIAEYANIILMNLFSVVI 245

Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPTI 298
           FLGG        P LN L T+G   +K   ++F+ + +   +PRF  DQ     WK   +
Sbjct: 246 FLGGPWPANELFP-LNVL-TIG---LKTTLLVFLFLWVRAAYPRFRYDQLMFLTWK-SYL 299

Query: 299 IAALGAILASL 309
             ++GA+ A++
Sbjct: 300 PLSIGALCATI 310


>pir||S34388 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - jelly fungus
           (Trimorphomyces papilionaceus) mitochondrion
           >gi|393383|emb|CAA52037.1| (X73821) NADH dehydrogenase
           subunit 1 [Trimorphomyces papilionaceus]
           Length = 328
           
 Score = 75.7 bits (183), Expect = 7e-13
 Identities = 70/255 (27%), Positives = 116/255 (45%), Gaps = 16/255 (6%)

Query: 1   MLRVIVNA--ILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKL 51
           ML V+ N   +LI+L    +   FM II RKV A + RR+GP       + QP  D +KL
Sbjct: 1   MLAVLYNLLEVLIVLVPILLSVAFMTIIERKVLAAMQRRVGPNKVGYYGVLQPFADALKL 60

Query: 52  FGKKENVTHGV---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPM 107
             K+  +       +F    V  L  ++L    IP G+   L  +   IL T  +  + +
Sbjct: 61  VVKETVIPAQATKSLFFLAPVITLIFSLLGWGVIPFGAGLTLSDFSLGILYTLAISSVGV 120

Query: 108 LGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
            G++FA  S+ + YA +G+ R+   +++ ++ L  AI+ +    G+F+   I+  Q+   
Sbjct: 121 YGVLFAGWSANSKYAFLGSLRSTAQMISYELILSSAILTVILLTGSFNIISIIENQEAI- 179

Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
           W  F +PLL   I + I   A   + PFD+  A  E+  G   E  G       +     
Sbjct: 180 W--FVVPLLPMFIIFFISALAETNRTPFDLPEAESELVAGFFTEHSGMIFVFFFLGEYCS 237

Query: 228 LFAETLFFSNIFLGG 242
           +   +   + +F GG
Sbjct: 238 IVLMSTLTAILFFGG 252


>sp|O78708|NU1M_VOMUR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3401921|dbj|BAA32117.1|
           (AB011225) NADH dehydrogenase subunit 1 [Vombatus
           ursinus]
           Length = 318
           
 Score = 75.7 bits (183), Expect = 7e-13
 Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 17/298 (5%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-N 57
           I+N +L ++           + RKV   +  R GP I       QPI D +KLF K+   
Sbjct: 3   IINLLLYIVPILLAVAFLTLVERKVLGYMQFRKGPNIVGPYGLLQPIADAVKLFTKEPLR 62

Query: 58  VTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMS 116
                I  F I   L  TI   ++ PL     L      L+ I  L  + +  I+++  +
Sbjct: 63  PLTSSISMFIIAPILALTIALTIWTPLPMPHTLIDLNLGLLFILALSGLSVYSILWSGWA 122

Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
           S + YA IGA RA+   ++ +V L   ++++    G+F+   +++ Q+     +   PL 
Sbjct: 123 SNSKYALIGALRAVAQTISYEVTLAIILLSIMLINGSFTLKNLIITQENMELIVTTWPL- 181

Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
             A+ + +   A   + PFD+     E+  G  VE+      +  +     +       +
Sbjct: 182 --AMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIMVMNAMTT 239

Query: 237 NIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
            +FLG ++   F+   LNTL+     + K LA+  + + I   +PRF  DQ     WK
Sbjct: 240 ILFLGSSLNHNFTH--LNTLS----FMTKTLALTLLFLWIRASYPRFRYDQLMHLLWK 291


>gi|10803739 NADH dehydrogenase subunit 1 [Gonostoma gracile]
           >gi|5509866|dbj|BAA82485.1| (AB016274) NADH
           dehydrogenase subunit 1 [Gonostoma gracile]
           Length = 321
           
 Score = 75.7 bits (183), Expect = 7e-13
 Identities = 87/314 (27%), Positives = 143/314 (44%), Gaps = 45/314 (14%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
           ++  +V A+ +LL   F+  +     RK+   +  R GP       + QP+ D +KLF K
Sbjct: 6   LVNPLVLAVPVLLAVAFLTLLE----RKILGYMQLRKGPNTIGPYGLLQPVADGVKLFTK 61

Query: 55  ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGI 110
              + + +  ++F    + AL  T+  L++ PL +          L+ I  L  + +  I
Sbjct: 62  EPIRPSTSSPLMFLATPILAL--TLALLLWTPLPAPYPAADLNLGLLFILALSSLAVYSI 119

Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
           + +  +S + YA IGA RA+   ++ +V LG  ++    + G F T + + A Q + W I
Sbjct: 120 LGSGWASNSKYALIGALRAIAQTISYEVSLGLILLCTITFAGNF-TLQTLNAAQENMWLI 178

Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
             LP   AA  + +   A   + PFD+     E+  G              V++A G FA
Sbjct: 179 --LPAWPAAAMWLVSTLAETNRTPFDLAEGESELVSG------------FNVEYAAGPFA 224

Query: 231 ETLFF----SNIFLGGAVITT-FSSPILN----TLATLGVLLIKQLAVLFVAIL-ISTIF 280
             LFF    +NI    A+ TT F  P LN     L+TL ++L  + A+L ++ L +    
Sbjct: 225 --LFFLAEYANILFMNALSTTLFLGPSLNPHTPELSTLNLML--KTALLSISFLWVRATL 280

Query: 281 PRFTIDQAAKFYWK 294
           PRF  DQ     WK
Sbjct: 281 PRFRYDQLMHLIWK 294


>gb|AAF66628.1| (AF142998) NADH dehydrogenase subunit 1 [Pteronotus parnellii]
           Length = 297
           
 Score = 75.7 bits (183), Expect = 7e-13
 Identities = 72/303 (23%), Positives = 134/303 (43%), Gaps = 26/303 (8%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           +L +IV  +L + + T V        RK+   +  R GP +       QPI D +KLF K
Sbjct: 6   LLSMIVPILLAVAFLTLVE-------RKILGYMQLRKGPNVVGPHGLLQPIADAVKLFTK 58

Query: 55  K--ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIM 111
           +    +T  +   F I   L  T+   M++PL     L      ++ +  +  + +  I+
Sbjct: 59  EPLRPLTSSITM-FIIAPILALTLALTMWVPLPMPHPLINMNLGVLFMLAMSSLAVYAIL 117

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
           ++  +S + YA IGA RA+   ++ +V L   ++++    G+++   ++  Q+ + W I 
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSYTLSTLITTQE-YMWLI- 175

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
            +P    A+ + I   A   + PFD+     E+  G  VE+ G    +  +     +   
Sbjct: 176 -IPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMM 234

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
               + +FLG      +++PI+  L T    ++K L +    + I   +PRF  DQ    
Sbjct: 235 NALTTILFLGA-----YNNPIMPELYTTN-FMVKTLLLTMSFLWIRASYPRFRYDQLMHL 288

Query: 292 YWK 294
            WK
Sbjct: 289 LWK 291


>emb|CAA66299.1| (X97713) NADH1 [Pongo pygmaeus pygmaeus]
           Length = 318
           
 Score = 75.3 bits (182), Expect = 9e-13
 Identities = 71/301 (23%), Positives = 129/301 (42%), Gaps = 23/301 (7%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK---K 55
           ++N +L+ +         M   RK+      R GP I       QP  D +KLF K   K
Sbjct: 3   VINLLLLTMSILIAMAFLMLTERKILGYTQLRKGPNIVGPCGLLQPFADALKLFTKEPLK 62

Query: 56  ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAM 115
            + +  +++      AL   +L    +P+ +  +    G L+ I     + +  I+++  
Sbjct: 63  PSTSTTILYIVSPALALTIALLLWTPLPMPNPLINLNLG-LLFILATSSLTVYSILWSGW 121

Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
           +S + YA IG  RA+   ++ ++ L   ++++    G+F+   ++  Q+ H W +  LP 
Sbjct: 122 ASNSNYALIGTLRAVAQTISYEITLALILLSVLLMSGSFNLSTLITTQE-HSWLL--LPS 178

Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
              A+ + I   A   + PFD+     E+  G   E+      +  +     +       
Sbjct: 179 WPLALMWFISTLAETNRAPFDLTEGESELVSGFNTEYAAGPFALFFMAEYTNIILMNALT 238

Query: 236 SNIFLGGAVITTFS--SPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
           + IFLG    TTF+  SP L+T     +  IK L +  + + I + +PRF  DQ     W
Sbjct: 239 AMIFLG----TTFNIHSPELHTT----LFTIKTLLLTSLFLWIRSTYPRFRYDQLMHLLW 290

Query: 294 K 294
           K
Sbjct: 291 K 291


>sp|O78701|NU1M_BRAVA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399741|dbj|BAA32110.1|
           (AB011218) NADH dehydrogenase subunit 1 [Bradypus
           variegatus]
           Length = 318
           
 Score = 74.9 bits (181), Expect = 1e-12
 Identities = 80/310 (25%), Positives = 138/310 (43%), Gaps = 38/310 (12%)

Query: 4   VIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFGKK- 55
           +++  IL L+    +   F+ +  RK+   +  R GP       + QP+ D +KLF K+ 
Sbjct: 1   MLLTNILCLMMPILLAVAFLTLTERKILGHMQLRKGPNTVGPHGLLQPVADAVKLFTKEP 60

Query: 56  -ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFA 113
              +T   +  F I   L  T+   ++ PL     L      ++ I  +  + +  I+++
Sbjct: 61  LHPLTSSKLM-FIIAPTLAFTLALSLWAPLPMPHPLINLNLSILFILAMSSLAVHSILWS 119

Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHL 173
             +S + YA IGA RA+   ++ +V L   ++++    G+F+   + + Q+   W I  L
Sbjct: 120 GWASNSKYALIGALRAVAQTISYEVTLAIILLSIMLINGSFTLSTLTITQE-QMWLI--L 176

Query: 174 PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETL 233
           P    A+ + I   A   + PFD+     E+  G              V++A G FA  L
Sbjct: 177 PTWPLAMMWFISTLAETNRTPFDLSEGESELVSG------------FNVEYAAGPFA--L 222

Query: 234 FF----SNIFLGGAVITT-----FSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFT 284
           FF    +NI L  A+  T     F +P+   L T+  L  K L ++F+ + I   +PRF 
Sbjct: 223 FFMAEYTNIILMNALTATLFFGAFHNPLFPELHTIN-LTTKTLILVFLFLWIRASYPRFR 281

Query: 285 IDQAAKFYWK 294
            DQ     WK
Sbjct: 282 YDQLMHLLWK 291


>gi|5835653 NADH dehydrogenase subunit 1 [Canis familiaris]
           >gi|7431918|pir||T11493 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - dog mitochondrion
           >gi|4154171|gb|AAD04763.1| (U96639) NADH dehydrogenase
           subunit 1 [Canis familiaris]
           Length = 318
           
 Score = 74.9 bits (181), Expect = 1e-12
 Identities = 72/299 (24%), Positives = 135/299 (45%), Gaps = 22/299 (7%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK--E 56
           I++ I+ +L A  V F+ + + RKV   +  R GP I       QPI D +KLF K+   
Sbjct: 6   IISLIIPILLA--VAFLTL-VERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPLR 62

Query: 57  NVTHGV-IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAM 115
            +T  + +F    + AL   +   + +P+    +    G L ++  +  + +  I+++  
Sbjct: 63  PLTSSMSMFILAPILALSLALTMWIPLPMPYPLINMNLGVLFMLA-MSSLAVYSILWSGW 121

Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
           +S + YA IGA RA+   ++ +V L   ++++    G+F+   +++ Q+ H W IF  P 
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLIITQE-HMWLIF--PA 178

Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
              A+ + I   A   + PFD+     E+  G  VE+      +  +     +    +  
Sbjct: 179 WPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNILT 238

Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           + +F G      F +P +  L ++    +K L +    + I   +PRF  DQ     WK
Sbjct: 239 TILFFG-----AFHNPFMPELYSIN-FTMKTLLLTICFLWIRASYPRFRYDQLMHLLWK 291


>gi|5835206 NADH dehydrogenase subunit 1 [Felis catus]
           >gi|1352539|sp|P48900|NU1M_FELCA NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431956|pir||T11402 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - cat
           mitochondrion >gi|1098524|gb|AAC48569.1| (U20753) NADH
           dehydrogenase subunit 1 [Felis catus]
           >gi|1589115|prf||2210305A NADH dehydrogenase:SUBUNIT=1
           [Felis catus]
           Length = 318
           
 Score = 74.5 bits (180), Expect = 2e-12
 Identities = 74/303 (24%), Positives = 133/303 (43%), Gaps = 23/303 (7%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           M+ V+   I ILL   F+      + RKV   +  R GP +       QPI D +KLF K
Sbjct: 3   MINVLSLIIPILLAVAFLTL----VERKVLGYMQLRKGPNVVGPYGLLQPIADAVKLFTK 58

Query: 55  K--ENVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIM 111
           +    +T  ++  F +   L  T+   M+IPL     ++     ++ +  +  + +  I+
Sbjct: 59  EPLRPLTSSMLM-FIMAPILALTLALTMWIPLPMPYPLINMNLGVLFMLAMSSLAVYSIL 117

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
           ++  +S + YA IGA RA+   ++ +V L   ++++    G+F T  +++  Q + W I 
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF-TLAMLITTQEYMWLI- 175

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
            +P    A+ + I   A   + PFD+     E+  G  VE+      +  +     +   
Sbjct: 176 -IPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFDVEYAAGPFALFFLAEYANIIMM 234

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
            +  + +F G      F SP +  L T+    +K L +    + I   +PRF  DQ    
Sbjct: 235 NILTTILFFG-----AFHSPYMPELYTIN-FTVKTLLLTTTFLWIRASYPRFRYDQLMHL 288

Query: 292 YWK 294
            WK
Sbjct: 289 LWK 291


>gi|11465930 NADH dehydrogenase subunit 1 [Pedinomonas minor]
           >gi|7431930|pir||T11320 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - Pedinomonas minor mitochondrion
           >gi|4378774|gb|AAD19672.1| (AF116775) NADH dehydrogenase
           subunit 1 [Pedinomonas minor]
           Length = 310
           
 Score = 74.5 bits (180), Expect = 2e-12
 Identities = 84/317 (26%), Positives = 137/317 (42%), Gaps = 40/317 (12%)

Query: 10  LILLYATFVGFMFMGII-RKVTARVHRRIGPPI------YQPIIDTIKLFGKKENVTHGV 62
           LILL +  +   F+ +I RKV A + RR GP         Q I D +KL  K      G+
Sbjct: 16  LILLVSVLLSVAFLVLIERKVIAYIQRRRGPVFVGFWGALQSIADGLKLILKTNLSVFGI 75

Query: 63  ---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGN 119
              I+      +   ++L+ +FIPLG + +  +   L  I  L  I + GI+ A +SS +
Sbjct: 76  EKSIYYASPFISFFISLLSWVFIPLGFL-LQDSDISLFFILALNSIGVYGILLAGLSSSS 134

Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
            +A +G  R+   +++ ++ L   I ++    G  S  ++V  Q+     +   PLL   
Sbjct: 135 RWAFLGGLRSAAQIISYELSLNICIFSIILCVGGLSIIKVVSFQEN---ILLVFPLLPFI 191

Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
           +   I+  A   + PFD+  A  E+  G  V++G                   + F+  F
Sbjct: 192 LISFIISLAEINRAPFDLPEAEAELVAGYNVDYG------------------AINFTFFF 233

Query: 240 LGGAVITTFSSPILNTL--ATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPT 297
           LG        S I+  L   +L  +LI  +  +F+ I +    PR+  DQ  K  WK   
Sbjct: 234 LGEYTHIVLISFIMAKLFFGSLNTILI-PIFFIFLIIQVRAALPRYRYDQLMKLGWKELL 292

Query: 298 IIA-----ALGAILASL 309
           +I+      L  IL SL
Sbjct: 293 LISFSCMFILSMILLSL 309


>gb|AAF61229.1|AF234897_1 (AF234897) NADH dehydrogenase I [Haemulon plumieri]
           Length = 324
           
 Score = 74.5 bits (180), Expect = 2e-12
 Identities = 81/305 (26%), Positives = 139/305 (45%), Gaps = 26/305 (8%)

Query: 4   VIVNAI--LILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           VI++ I  L L+    +   F+ ++ RKV   +  R GP +       QPI D +KLF K
Sbjct: 5   VIIHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64

Query: 55  ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
              + + +  ++F    + AL   +     +PL    V    G L ++  L  + +  I+
Sbjct: 65  EPVRPSTSSPLLFLLAPMLALSLALTLWAPMPLPYPMVDLNLGILFILA-LSSLTVYSIL 123

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
            +  +S + YA IGA RA+   ++ +V LG  ++    + G F+     +AQ+   W I 
Sbjct: 124 GSGWASNSKYALIGALRAVAQTISYEVSLGLILLGTIIFIGGFTLQTFNVAQE-SVWLI- 181

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFA 230
            LP    A  + +   A   + PFD+     E+  G  VE+ GG +      ++A  L  
Sbjct: 182 -LPAWPLAAMWYVSTFAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL-ISTIFPRFTIDQAA 289
            TL  +N+F+G +      +P+   L  +   L+ + A+L +A L +   +PRF  DQ  
Sbjct: 241 NTL-SANLFMGAS-----HAPLYPELTAIN--LMTKAALLSIAFLWVRASYPRFRYDQLM 292

Query: 290 KFYWK 294
              WK
Sbjct: 293 HLIWK 297


>gi|5835251 NADH dehydrogenase subunit 1 [Locusta migratoria]
           >gi|128643|sp|P09045|NU1M_LOCMI NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|102855|pir||S06214 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
           migratory locust mitochondrion >gi|13088|emb|CAA28904.1|
           (X05286) ND-1 (URF-1) [Locusta migratoria]
           >gi|1182018|emb|CAA56530.1| (X80245) ND1 [Locusta
           migratoria]
           Length = 313
           
 Score = 74.1 bits (179), Expect = 2e-12
 Identities = 72/303 (23%), Positives = 125/303 (40%), Gaps = 28/303 (9%)

Query: 2   LRVIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
           L + V   L+L+    +   F+ ++ RKV   +H R GP       I QP  D IKLF K
Sbjct: 5   LFMFVLNFLLLIICVLISVAFLTLMERKVLGYIHIRKGPNKVGFLGIPQPFSDAIKLFCK 64

Query: 55  KENV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
           ++ +   ++  ++ F  VF L  ++L  +  P  +      YG   L    L +     M
Sbjct: 65  EQPIPFMSNYFLYYFSPVFNLMLSLLIWVIFPYLTYMCSFPYGFYFLCCTSLSV--YTFM 122

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
            A  SS + YA +G+ R++   ++ +V L   +++L    G+F+    +  Q    + +F
Sbjct: 123 IAGWSSNSNYALLGSLRSVAQTISYEVSLALILLSLIILIGSFNMLYFMNFQLYCWFIVF 182

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
             PL L+     +   A   + PFD      E+  G  +E+      ++ +     +   
Sbjct: 183 SFPLALSFFGSSL---AETNRTPFDFAEGESELVSGFNIEYSTGGFTLIFLAEYSSIIFM 239

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
           ++ FS IFLGG   + +                K   V F  + +    PRF  D+    
Sbjct: 240 SMLFSLIFLGGDFYSFY-------------FFFKLSLVSFFFVWVRGTLPRFRYDKLMYL 286

Query: 292 YWK 294
            WK
Sbjct: 287 AWK 289


>sp|P92604|NU1M_CANFA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|1809242|gb|AAB41650.1|
           (U41443) NADH dehydrogenase subunit 1 [Canis familiaris]
           Length = 318
           
 Score = 74.1 bits (179), Expect = 2e-12
 Identities = 72/299 (24%), Positives = 134/299 (44%), Gaps = 22/299 (7%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK--E 56
           I++ I+ +L A  V F+ + + RKV   +  R GP I       QPI D +KLF K+   
Sbjct: 6   IISLIIPILLA--VAFLTL-VERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPLR 62

Query: 57  NVTHGV-IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAM 115
            +T  + +F    + AL   +     +P+    +    G L ++  +  + +  I+++  
Sbjct: 63  PLTSSMSMFILAPILALSLALTMWSPLPMPYPLINMNLGVLFMLA-MSSLAVYSILWSGW 121

Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
           +S + YA IGA RA+   ++ +V L   ++++    G+F+   +++ Q+ H W IF  P 
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLIITQE-HMWLIF--PA 178

Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
              A+ + I   A   + PFD+     E+  G  VE+      +  +     +    +  
Sbjct: 179 WPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNILT 238

Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           + +F G      F +P +  L ++    +K L +    + I   +PRF  DQ     WK
Sbjct: 239 TVLFFG-----AFHNPFMPELYSIN-FTMKTLLLTICFLWIRASYPRFRYDQLMHLLWK 291


>pir||T14245 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
           dermatophytic fungus (Trichophyton rubrum) mitochondrion
           >gi|3947743|emb|CAA77189.1| (Y18476) NADH dehydrogenase
           subunit 1 [Trichophyton rubrum]
           Length = 343
           
 Score = 74.1 bits (179), Expect = 2e-12
 Identities = 80/301 (26%), Positives = 132/301 (43%), Gaps = 32/301 (10%)

Query: 27  RKVTARVHRRIGPPIY------QPIIDTIKLFGKK---ENVTHGVIFDFGIVFALGATIL 77
           RK  A + RR+G  I       Q   D +KL  K+       + ++   G +  L  ++L
Sbjct: 29  RKTMASMQRRLGQNIVGYYGLLQAFADALKLLLKEYVAPTQANIILLFLGPIITLIFSLL 88

Query: 78  ALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLAI 136
               IP GS   +  +   ++ I  +  +   GI+ A  S+ + YA +G+ R+   L++ 
Sbjct: 89  GYRVIPYGSGLFISDFNLGILYILAVSSLATYGILLAGWSANSKYAFLGSLRSTAQLISY 148

Query: 137 QVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFD 196
           ++ L F I+ +  + G+ +   I+ +Q+V     F LPLL   + + I   A   + PFD
Sbjct: 149 ELLLRFYILLVILFTGSLNLTTIIESQKV---VYFILPLLPIFLIFFIGCIAETNRAPFD 205

Query: 197 IMIAPGEISLGPMVEFGGKYLGIL--QVQHAIGLFAETLFFSNIFLGGAVI--------- 245
           +  A  E+  G M E       I     Q+A  +    +  S +FLGG +          
Sbjct: 206 LAEAESELVSGFMTEHSAVIFMIFFFLAQYA-SIVLICILSSVLFLGGYLNILPLNTYNV 264

Query: 246 ----TTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK--WPTII 299
               + FS  ++N L++L  L IK   ++FV I +   FPR   DQ     W    P II
Sbjct: 265 CDFNSLFSDYLINGLSSLN-LAIKTAFLIFVFIWVRASFPRIRFDQLMSVCWTILLPIII 323

Query: 300 A 300
           A
Sbjct: 324 A 324


>gi|11602892 NADH dehydrogenase subunit 1 [Pteropus scapulatus]
           >gi|11545676|gb|AAG37913.1|AF321050_1 (AF321050) NADH
           dehydrogenase subunit 1 [Pteropus scapulatus]
           Length = 318
           
 Score = 74.1 bits (179), Expect = 2e-12
 Identities = 80/304 (26%), Positives = 134/304 (43%), Gaps = 28/304 (9%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           +L VIV  +L + + T +        RKV   +  R GP +       QP+ D +KLF K
Sbjct: 6   LLTVIVPILLAVAFLTLLE-------RKVLGYMQLRKGPNVVGPYGLLQPMADALKLFIK 58

Query: 55  K--ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIM 111
           +    +T      F I   L  T+   M+IPL     L      +L    +  + +  I+
Sbjct: 59  EPLRPLTSSPSM-FIIAPILALTLALTMWIPLPMPHPLINMNLAVLFMLAMSSLAVYSIL 117

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
           ++  +S + YA IGA RA+   ++ +V L   ++++    G+FS   +++ Q+ H W + 
Sbjct: 118 WSGWASNSKYALIGAMRAVAQTISYEVTLAIILLSVLLLSGSFSLSTLIITQE-HAWLL- 175

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFA 230
            L     A+ + I   A   + PFD+     E+  G  VE+ GG +      ++A  +  
Sbjct: 176 -LSSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFMAEYANIIMM 234

Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
            TL  + +F+G      F  P +  L T   L+ K L +    + I   +PRF  DQ   
Sbjct: 235 NTL-TAILFMG-----AFHDPTMPELYTTN-LITKTLLLTVFFLWIRASYPRFRYDQLMH 287

Query: 291 FYWK 294
             WK
Sbjct: 288 LLWK 291


>pir||C69032 NADH dehydrogenase (ubiquinone), subunit 1 related protein -
           Methanobacterium thermoautotrophicum (strain Delta H)
           >gi|2622349|gb|AAB85726.1| (AE000891) NADH dehydrogenase
           (ubiquinone), subunit 1 related protein
           [Methanobacterium thermoautotrophicum]
           Length = 329
           
 Score = 73.7 bits (178), Expect = 3e-12
 Identities = 73/311 (23%), Positives = 130/311 (41%), Gaps = 39/311 (12%)

Query: 6   VNAILILLYATFVGFMFMGIIRK-VTARVHRRIGPPIYQP-IIDTIKLFGKK----ENVT 59
           V  +  ++    V     GI RK V AR+ +RIGPP+  P ++  +K F KK     +  
Sbjct: 8   VTVLGTVILGLLVSLWLPGIERKFVHARIQQRIGPPVSSPGLMAALKFFYKKTVRPSSPL 67

Query: 60  HGVIFDFGIVFALGATILALMFIP----LGSISVLRAYGDLILITFLLEIPMLGIMFAAM 115
             +     IV  + A ++ L  IP    LG+++ L A    + I  ++ + M  +  + M
Sbjct: 68  PRLYNSLPIVGFISALLILLFLIPPMYTLGALASLVAIVGFLKIEEVIYVFMGSLSRSVM 127

Query: 116 SSGNPYAGIG-----------------AQRALLTLLAIQVPLGFAIVALAEYYGTFSTYE 158
           S G P+  +                  + RA   +     P+  A+   A   G+    +
Sbjct: 128 SMGMPFPDLARGAKHPDLQRYFLEDLSSMRAFRLIAFGSFPIYIALFVPAVMSGSIFLKD 187

Query: 159 IVMAQQVHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLG 218
           IV  Q VHG  +F L  ++ A+ + I    +  + PF I+    ++  GP +E+  +Y  
Sbjct: 188 IVAYQAVHGPVLFTLAGVVGAVVFFIGYMILLNEYPFAILKTKADVIEGPYMEYAARYRA 247

Query: 219 ILQVQHAIGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLF--VAILI 276
            + +     +F     FS +FLG          +   + + G+L+   +A +F  +  + 
Sbjct: 248 FVYITRGFLMFTLGCLFSVLFLG----------VPPNILSWGILVNIAVAAVFPILMAIF 297

Query: 277 STIFPRFTIDQ 287
           S   P FT  Q
Sbjct: 298 SAFAPVFTFKQ 308


>gi|5835459 NADH dehydrogenase subunit 1 [Florometra serratissima]
           >gi|7431923|pir||T11116 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - Florometra serratissima
           mitochondrion >gi|2970423|gb|AAD05073.1| (AF049132) NADH
           dehydrogenase subunit 1 [Florometra serratissima]
           Length = 325
           
 Score = 73.7 bits (178), Expect = 3e-12
 Identities = 85/305 (27%), Positives = 138/305 (44%), Gaps = 26/305 (8%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQP------IIDTIKLFGK 54
           ML  IVN I+ +L A  V F+ + I RK+   +  R GP I  P      I D IKLF K
Sbjct: 7   MLINIVNIIIPILIA--VAFIVL-IERKILGYMQLRKGPSIVGPSGTMQTIADGIKLFIK 63

Query: 55  KE----NVTHGVIFDFGIVFALGATIL-ALMFIPLGSISVLRAYGDLILITFLLEIPMLG 109
           +     + T  + F    +F L A IL  ++  P  +I+V  +   LILI  +  + +  
Sbjct: 64  ENLKPSSATPTLFFLSPALFLLLALILWTIIPCPNPNINVNLS---LILILGISSLSVYS 120

Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
           ++    +S + Y+ IG  RA+   ++ ++ +   +++L    GTF+   I+ AQ  + W 
Sbjct: 121 LLGTGWASNSKYSLIGGIRAVAQTISYEISISIILLSLIILTGTFNLNAIINAQN-NSWL 179

Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
           IF   + L+ I Y I   A   + PFD+     E+  G  VE+ G    +  +     + 
Sbjct: 180 IFSC-IPLSYIWY-ISSLAETNRTPFDLTEGESELVSGYNVEYAGGPFALFFLAEYANII 237

Query: 230 AETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAA 289
              L  + +FLGG      + PI      + ++ IK   +    + +   FPRF  DQ  
Sbjct: 238 FINLLSTILFLGG------NLPINIFPINIIIIAIKTSILSSTFLWVRASFPRFRYDQLM 291

Query: 290 KFYWK 294
              WK
Sbjct: 292 FLTWK 296


>gi|5835667 NADH dehydrogenase subunit 1 [Artibeus jamaicensis]
           >gi|7431948|pir||T11140 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - fruit bat (Artibeus jamaicensis)
           mitochondrion >gi|4164475|gb|AAD05438.1| (AF061340) NADH
           dehydrogenase subunit 1 [Artibeus jamaicensis]
           Length = 318
           
 Score = 73.7 bits (178), Expect = 3e-12
 Identities = 75/303 (24%), Positives = 128/303 (41%), Gaps = 26/303 (8%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           +L  IV  +L + + T V        RK+   +  R GP +       QPI D +KLF K
Sbjct: 6   LLTTIVPVLLAVAFLTLVE-------RKILGYMQLRKGPNVVGPYGLLQPIADAVKLFIK 58

Query: 55  K--ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIM 111
           +    +T  +   F I   L  T+   M+ PL     L      IL    +  + +  I+
Sbjct: 59  EPLRPLTSSITM-FIIAPILALTLALTMWAPLPMPHPLINMNLSILFMLAMSSLAVYSIL 117

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
           ++  +S + YA IGA RA+   ++ +V L   ++++    G++S   ++  Q+ + W I+
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSYSLSTLITTQE-YMWLIY 176

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
             P     + + I   A   + PFD+     E+  G  VE+ G    +  +     +   
Sbjct: 177 --PSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMM 234

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
               + +FLG      + +PI   L T+    IK L +    + I   +PRF  DQ    
Sbjct: 235 NALTTTLFLGA-----YHNPIFPELYTIN-FAIKTLLLTTTFLWIRASYPRFRYDQLMHI 288

Query: 292 YWK 294
            WK
Sbjct: 289 LWK 291


>gb|AAF66625.1| (AF142995) NADH dehydrogenase subunit 1 [Artibeus lituratus]
           Length = 305
           
 Score = 73.7 bits (178), Expect = 3e-12
 Identities = 75/303 (24%), Positives = 128/303 (41%), Gaps = 26/303 (8%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           +L  IV  +L + + T V        RK+   +  R GP +       QPI D +KLF K
Sbjct: 6   LLTTIVPVLLAVAFLTLVE-------RKILGYMQLRKGPNVVGPYGLLQPIADAVKLFTK 58

Query: 55  K--ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIM 111
           +    +T  +   F I   L  T+   M++PL     L      IL    +  + +  I+
Sbjct: 59  EPLRPLTSSITM-FIIAPILALTLALTMWVPLPMPHPLINMNLSILFMLAMSSLAVYSIL 117

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
           ++  +S + YA IGA RA+   ++ +V L   ++++    G++S   ++  Q+ + W I+
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSYSLSTLITTQE-YMWLIY 176

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
             P     + + I   A   + PFD+     E+  G  VE+ G    +  +     +   
Sbjct: 177 --PSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMM 234

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
               + +FLG      + +PI   L T     IK L +    + I   +PRF  DQ    
Sbjct: 235 NALTTTLFLGA-----YHNPISPELYTTQ-FAIKTLXLTTTFLWIRASYPRFRYDQLMHL 288

Query: 292 YWK 294
            WK
Sbjct: 289 LWK 291


>emb|CAA10597.1| (AJ132137) NADH dehydrogenase subunit 1 [Littorina saxatilis]
           Length = 312
           
 Score = 73.4 bits (177), Expect = 3e-12
 Identities = 73/304 (24%), Positives = 132/304 (43%), Gaps = 27/304 (8%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
           +L  +V  I +LL   F    F  + RK  + +  R GP       + QP+ D  KL  K
Sbjct: 5   LLSSLVAYICVLLAVAF----FTLLERKGLSYIQIRKGPNKVGIAGLPQPLADAAKLLTK 60

Query: 55  KENVTHGVIFDFGIVFA--LGATILALMFIPLGSISVLRAYGDLILITFLLE--IPMLGI 110
           +  +   V+ ++   F   + + ILAL+   L       +Y    ++ FL    + + G 
Sbjct: 61  E--IAKPVMANYSPYFIAPIFSLILALLLWQLYPSLYSTSYFKWGILFFLCVSGLNVYGT 118

Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
           + A  SS + YA +G+ RA+   ++ +V +   ++      G+FS +E+  +Q+    S 
Sbjct: 119 LLAGWSSNSKYALLGSLRAIAQTISYEVSMALVLLFPLFLVGSFSFFEVGESQESIWLSF 178

Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
             LP+   +  + +   A   + PFD      E+  G  +E+G     ++ +     +  
Sbjct: 179 LMLPV---SFIWFVTCVAETNRAPFDFAEGESELVSGFNIEYGSAGFALIFLAEYANILV 235

Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
            +LF S +F GG+ +  F S I+         ++K L   F+ I +   +PRF  D    
Sbjct: 236 MSLFSSILFFGGSYMFFFESDIM--------FMLKILFFAFLFIWVRGSYPRFRYDLLMT 287

Query: 291 FYWK 294
             WK
Sbjct: 288 LTWK 291


>gb|AAF61228.1|AF234896_1 (AF234896) NADH dehydrogenase I [Haemulon plumieri]
           Length = 324
           
 Score = 73.4 bits (177), Expect = 3e-12
 Identities = 80/305 (26%), Positives = 137/305 (44%), Gaps = 26/305 (8%)

Query: 4   VIVNAI--LILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           VI++ I  L L+    +   F+ ++ RKV   +  R GP +       QPI D +KLF K
Sbjct: 5   VIIHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64

Query: 55  ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
              + + +  ++F    + AL   +     +PL    V    G L ++  L  + +  I+
Sbjct: 65  EPVRPSTSSPLLFLLAPMLALSLALTLWAPMPLPYPMVDLNLGILFILA-LSSLTVYSIL 123

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
            +  +S + YA IGA RA+   ++ +V LG  ++    + G F T++     Q   W IF
Sbjct: 124 GSGWASNSKYALIGALRAVAQTISYEVSLGLILLGTIIFIGGF-TFQTFNVAQESVWLIF 182

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFA 230
             P    A  + +   A   + PFD+     E+  G  VE+ GG +      ++A  L  
Sbjct: 183 --PAWPLAAMWYVSTFAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL-ISTIFPRFTIDQAA 289
            TL  + +F+G +      +P+   L  +   L+ + A+L +A L +   +PRF  DQ  
Sbjct: 241 NTL-SATLFMGAS-----HAPLYPELTAIN--LMTKAALLSIAFLWVRASYPRFRYDQLM 292

Query: 290 KFYWK 294
              WK
Sbjct: 293 HLIWK 297


>gb|AAF66629.1| (AF142999) NADH dehydrogenase subunit 1 [Pteronotus quadridens]
           Length = 300
           
 Score = 73.4 bits (177), Expect = 3e-12
 Identities = 70/299 (23%), Positives = 132/299 (43%), Gaps = 15/299 (5%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP--IYQPIIDTIKLFGKK--E 56
           ++ ++   + ILL   F+  +   I+  +  R    +  P  + QPI D +KLF K+   
Sbjct: 3   LINLLSXIVPILLAVAFLTLIXRXILGYMXLRKGPNVVGPYGLLQPIADAVKLFTKEPLR 62

Query: 57  NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAM 115
            +T  +   F I   L  T+   M+IPL     L      +L    +  + +  I+++  
Sbjct: 63  PLTSSIAM-FIIAPILALTLALTMWIPLPMPHPLINMNLSVLFMLAMSSLAVYSILWSGW 121

Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
           +S + YA IGA RA+   ++ +V L   ++++    G+++   +++AQ+   W I  +P 
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSYTLSTLIIAQECM-WLI--IPA 178

Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
              A+ + I   A   + PFD+     E+  G  VE+ G    +  +     +       
Sbjct: 179 WPLAMMWFISTLAETNRAPFDLTGGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALT 238

Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           + +FLG      +++PI+  L      +IK + +    + I    PRF  DQ  +  WK
Sbjct: 239 TILFLG-----AYNNPIMPELCPTN-FMIKTMLLTMSFLWIRASSPRFRYDQLLRLLWK 291


>gi|5835220 NADH dehydrogenase subunit 1 [Protopterus dolloi]
           >gi|2147753|pir||S68128 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - Protopterus dolloi mitochondrion
           >gi|1161204|gb|AAC38021.1| (L42813) NADH dehydrogenase
           subunit 1 [Protopterus dolloi]
           Length = 322
           
 Score = 73.0 bits (176), Expect = 4e-12
 Identities = 72/301 (23%), Positives = 125/301 (40%), Gaps = 17/301 (5%)

Query: 2   LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK 55
           L  I N+++ ++           + RK+   +  R GP +        PI D +KLF K+
Sbjct: 4   LPTITNSLMYIVPILLAVAFLTLVERKIIGYMQHRKGPNVVGPYGLLHPIADGVKLFIKE 63

Query: 56  E-NVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMFA 113
               T      F +   L  T+  L++ PL     +      L+ I  +  + +  I+ +
Sbjct: 64  PVRPTASSTTLFILAPTLALTLALLIWTPLPMPFPMANVNLTLLFIMAVSSLSVYSILTS 123

Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHL 173
             +S + YA IGA RA+   ++ +V LG  ++A   + G FS       Q+   W I  +
Sbjct: 124 GWASNSKYALIGALRAIAQTISYEVSLGLILLAAIIFMGNFSMLTFSTGQEAI-WLI--I 180

Query: 174 PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETL 233
           P    A  + +   A   + PFD+     E++ G  VE+ G  L    +     +     
Sbjct: 181 PAWPLATMWYVSTLAETNRSPFDLTEGESELASGFNVEYAGGPLASFYLAEYANIMLMNT 240

Query: 234 FFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
               IFLG ++     + +L  + T  +L+ K  A+  V + +   +PRF  DQ     W
Sbjct: 241 ISVIIFLGDSL-----NLLLPEMMT-SLLMFKTTALSLVFLWVRASYPRFRYDQLMHLIW 294

Query: 294 K 294
           K
Sbjct: 295 K 295


>sp|O78704|NU1M_MACEU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399747|dbj|BAA32113.1|
           (AB011221) NADH dehydrogenase subunit 1 [Macropus
           eugenii]
           Length = 318
           
 Score = 72.6 bits (175), Expect = 6e-12
 Identities = 73/298 (24%), Positives = 131/298 (43%), Gaps = 17/298 (5%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKENV 58
           ++N +L ++           + RK    +  R GP I       QP+ D IKLF K+   
Sbjct: 3   VINLLLYIIPILLAVAFLTLVERKDLGYMQFRKGPNIVGPYGLLQPVADGIKLFTKEPLR 62

Query: 59  THGVIFDFGIVFALGATILA-LMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMS 116
                F+  I+  + A  LA  ++ PL     L      L+ I  L  + +  I+++  +
Sbjct: 63  PLTSSFNMFIIAPILALTLARTIWTPLPMPHTLIDLNLGLLFILSLSGLSVYSILWSGWA 122

Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
           S + YA IGA RA+   ++ +V L   ++++    G+F+   +++ Q+     +   PL 
Sbjct: 123 SNSKYALIGALRAVAQTISYEVTLAIILLSIMLINGSFTLKNLLITQENMWLIVSTWPL- 181

Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
             A+ + I   A   + PFD+     E+  G  VE+      +  +     + A     +
Sbjct: 182 --AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIIAMNAMTA 239

Query: 237 NIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
            +FLG ++   FS   L+TL+     ++K L + F+ + I   +PRF  DQ     WK
Sbjct: 240 ILFLGSSLNHNFSQ--LSTLS----FMLKTLFLTFMFLWIRASYPRFRYDQLMYLLWK 291


>sp|O78712|NU1M_SMIMA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3401929|dbj|BAA32121.1|
           (AB011229) NADH dehydrogenase subunit 1 [Sminthopsis
           macroura]
           Length = 318
           
 Score = 72.6 bits (175), Expect = 6e-12
 Identities = 76/302 (25%), Positives = 131/302 (43%), Gaps = 23/302 (7%)

Query: 2   LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK 55
           L +++  I ILL   F+      I RKV   +  R GP I       QP  D +KLF K+
Sbjct: 4   LNLLLYIIPILLAVAFLTL----IERKVLGYMQFRKGPNIVGPYGLLQPFADAVKLFTKE 59

Query: 56  --ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMF 112
               +T  ++  F +   L  +I   ++ PL   + L      L+ I  L  + +  I++
Sbjct: 60  PLRPLTSSILM-FILAPILALSIALTIWTPLPMPNTLLDLNLGLLFILSLSGLSVYSILW 118

Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFH 172
           +  +S + YA IGA RA+   ++ +V L   ++++    G+F+   +   Q+   W +  
Sbjct: 119 SGWASNSKYALIGALRAVAQTISYEVSLAIILLSVMLINGSFTLKTLSTTQE--NWWLIT 176

Query: 173 LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAET 232
               LA + Y I   A   + PFD+     E+  G  VE+      +  +     + A  
Sbjct: 177 TTWPLAMMWY-ISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIIAMN 235

Query: 233 LFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFY 292
              + +FLG ++ T      LN + T+  +L K L +    + +   +PRF  DQ     
Sbjct: 236 AITTILFLGSSLTTN-----LNHIDTISFML-KTLLLTMAFLWVRASYPRFRYDQLMHLL 289

Query: 293 WK 294
           WK
Sbjct: 290 WK 291


>gb|AAF66624.1| (AF142994) NADH dehydrogenase subunit 1 [Noctilio leporinus]
           Length = 318
           
 Score = 72.6 bits (175), Expect = 6e-12
 Identities = 77/305 (25%), Positives = 133/305 (43%), Gaps = 30/305 (9%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           +L +I+  +L + + T          RKV   +  R GP +       QPI D +KLF K
Sbjct: 6   LLTMIIPILLAVAFLTLTE-------RKVLGYMQLRKGPNVVGPYGLLQPIADAVKLFTK 58

Query: 55  K--ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLG--- 109
           +  + +T  V   F I   L  T+   M+ PL   + L      + I F+L +  LG   
Sbjct: 59  EPLQPMTSSVTM-FIIAPILALTLALTMWTPLPMPNPLINMN--LGILFMLAMSSLGVYS 115

Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
           I+++  +S + YA IGA RA+   ++ +V L   ++++    G+F T   +   Q   W 
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSF-TLSTLNTTQNFIWL 174

Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
           I  +P    A+ + I   A   + PFD+     E+  G  VE+ G    +  +     + 
Sbjct: 175 I--IPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANII 232

Query: 230 AETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAA 289
                 + +FLG      ++ P++  L  L   ++K L +  + + +   +PRF  DQ  
Sbjct: 233 MMNALTTILFLG-----AYNHPVMPELYALN-FMMKTLLLTMLFLWVRASYPRFRYDQLM 286

Query: 290 KFYWK 294
              WK
Sbjct: 287 HLLWK 291


>gb|AAF66630.1| (AF143000) NADH dehydrogenase subunit 1 [Mormoops blainvillii]
           Length = 306
           
 Score = 72.6 bits (175), Expect = 6e-12
 Identities = 70/300 (23%), Positives = 133/300 (44%), Gaps = 21/300 (7%)

Query: 5   IVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKK-- 55
           I+N +L+++    +   F+ +I RK+   +  R GP +       QPI D +KLF K+  
Sbjct: 3   IIN-LLLMIVPILLAVAFLTLIERKILGYMQLRKGPNVVGPYGLLQPIADAVKLFVKEPL 61

Query: 56  ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAA 114
             +T  +   F I   L  T+   M++PL     L      +L    +  + +  I++  
Sbjct: 62  RPLTSSITM-FIIAPILALTLALTMWVPLPMPHPLINMNLSVLFMLAMSSLAVYAILWXG 120

Query: 115 MSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLP 174
            +S + YA IGA RA+   ++ +V L   ++++    G+++   +++ Q+ + W IF  P
Sbjct: 121 WASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSYTLSTLIITQE-YMWLIF--P 177

Query: 175 LLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLF 234
               A+ + I   A   + PFD+     E+  G  VE+ G    +  +     +      
Sbjct: 178 AWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNAL 237

Query: 235 FSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
            + +F+G      +++ +L  L T    +IK   +    + +   +PRF  DQ     WK
Sbjct: 238 TTILFMGA-----YNNSLLPELYTTN-FMIKTSLLTMSFLWVRASYPRFRYDQLMHLLWK 291


>gi|5835140 NADH dehydrogenase subunit 1 [Pan paniscus]
           >gi|6045121|dbj|BAA85294.1| (D38116) NADH dehydrogenase
           subunit 1 [Pan paniscus]
           Length = 318
           
 Score = 72.2 bits (174), Expect = 8e-12
 Identities = 77/307 (25%), Positives = 133/307 (43%), Gaps = 24/307 (7%)

Query: 9   ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-NVTH 60
           +L+L+    +   F+ +  RK+   +  R GP I       QP  D +KLF K+    + 
Sbjct: 6   LLLLIVPVLIAMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPST 65

Query: 61  GVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGN 119
             I  +     L  TI  L++ PL   + L      L+ I     + +  I+++  +S +
Sbjct: 66  STITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSILWSGWASNS 125

Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
            YA IGA RA+   ++ +V L   +++     G+F+   ++  Q+ H W I  LP    A
Sbjct: 126 NYALIGALRAVAQTISYEVTLAIILLSTLLMSGSFNLSTLITTQE-HLWLI--LPTWPLA 182

Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
           + + I   A   + PFD+     E+  G  +E+      +  +   + +       + IF
Sbjct: 183 MMWFISTLAETNRTPFDLTEGESELVSGFNIEYAAGPFALFFMAEYMNIIMMNTLTATIF 242

Query: 240 LGGAVITTFS--SPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK--W 295
           LG    TT++  SP L T       + K L +  + + I T +PR   DQ     WK   
Sbjct: 243 LG----TTYNTHSPELYTT----YFVTKALLLTSLFLWIRTTYPRLCYDQLMHLLWKNFL 294

Query: 296 PTIIAAL 302
           P  +A+L
Sbjct: 295 PLTLASL 301


>gb|AAF61225.1|AF234893_1 (AF234893) NADH dehydrogenase I [Haemulon plumieri]
           >gi|7341271|gb|AAF61227.1|AF234895_1 (AF234895) NADH
           dehydrogenase I [Haemulon plumieri]
           >gi|7341277|gb|AAF61230.1|AF234898_1 (AF234898) NADH
           dehydrogenase I [Haemulon plumieri]
           Length = 324
           
 Score = 72.2 bits (174), Expect = 8e-12
 Identities = 80/305 (26%), Positives = 138/305 (45%), Gaps = 26/305 (8%)

Query: 4   VIVNAI--LILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           VI++ I  L L+    +   F+ ++ RKV   +  R GP +       QPI D +KLF K
Sbjct: 5   VIIHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64

Query: 55  ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
              + + +  ++F    + AL   +     +PL    V    G L ++  L  + +  I+
Sbjct: 65  EPVRPSTSSPLLFLLAPMLALSLALTLWAPMPLPYPMVDLNLGILFILA-LSSLTVYSIL 123

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
            +  +S + YA IGA RA+   ++ +V LG  ++    + G F+     +AQ+   W I 
Sbjct: 124 GSGWASNSKYALIGALRAVAQTISYEVSLGLILLGTIIFTGGFTLQTFNVAQE-SVWLI- 181

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFA 230
            LP    A  + +   A   + PFD+     E+  G  VE+ GG +      ++A  L  
Sbjct: 182 -LPAWPLAAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL-ISTIFPRFTIDQAA 289
            TL  + +F+G +      +P+   L  +   L+ + A+L +A L +   +PRF  DQ  
Sbjct: 241 NTL-SATLFMGAS-----HAPLYPELTAIN--LMTKAALLSIAFLWVRASYPRFRYDQLM 292

Query: 290 KFYWK 294
              WK
Sbjct: 293 HLIWK 297


>gi|9653260 NADH dehydrogenase subunit 1 [Physeter catodon]
           >gi|9368963|emb|CAB98270.1| (AJ277029) NADH
           dehydrogenase 1 [Physeter catodon]
           Length = 318
           
 Score = 72.2 bits (174), Expect = 8e-12
 Identities = 74/302 (24%), Positives = 130/302 (42%), Gaps = 21/302 (6%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           M+ +++  + ILL   F+      + RK    +  R GP I       QP  D IKLF K
Sbjct: 3   MINILMLTLPILLAVAFLTL----VERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTK 58

Query: 55  KENVTHGVIFDFGIVFALGATILAL-MFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMF 112
           +            I+  + A ILAL M+ PL     ++  +  ++ +  +  + +  I++
Sbjct: 59  EPLRPATSSTTMFIIAPMLALILALTMWSPLPMPYPLINMHLGILFMLAMSSLTVYSILW 118

Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFH 172
           +  +S + YA IGA RA+   ++ +V L   ++++    G+F T   +   Q   W +  
Sbjct: 119 SGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSF-TLSALATTQEQLWLL-- 175

Query: 173 LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAET 232
           LPL    + + I   A   + PFD+     E+  G  VE+      +  +     +    
Sbjct: 176 LPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMN 235

Query: 233 LFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFY 292
           +  + +FLG     T+ +P    L T   L++K L +    + I   +PRF  DQ     
Sbjct: 236 MLSTILFLG-----TYHNPYTPELHTTN-LILKTLLLTMSFLWIRASYPRFRYDQLMHLL 289

Query: 293 WK 294
           WK
Sbjct: 290 WK 291


>gb|AAC28344.1| (AF065103) NADH dehydrogenase subunit 1 [Nyctalus noctula]
           >gi|3372826|gb|AAC28346.1| (AF065105) NADH dehydrogenase
           subunit 1 [Nyctalus noctula] >gi|3372829|gb|AAC28347.1|
           (AF065106) NADH dehydrogenase subunit 1 [Nyctalus
           noctula] >gi|3372832|gb|AAC28348.1| (AF065107) NADH
           dehydrogenase subunit 1 [Nyctalus noctula]
           Length = 301
           
 Score = 71.8 bits (173), Expect = 1e-11
 Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 23/299 (7%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK--E 56
           +   I ILL   F+  +     RKV   +  R GP I       QPI D +KLF K+  +
Sbjct: 1   LTTIIPILLAVAFLTLLE----RKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFIKEPLQ 56

Query: 57  NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAM 115
            +T  +   F I   L  T+  +M+IPL     L      IL    L  + +  I+++  
Sbjct: 57  PLTSSLTL-FIIAPTLALTLALMMWIPLPMPHPLINMNLSILFMLALSSLAVYAILWSGW 115

Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
           +S + YA IGA RA+   ++ +V L   I+++    G+F+   ++  Q+ + W I  +P 
Sbjct: 116 ASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSFTLSTLITTQE-YTWLI--MPS 172

Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
              A+ + I   A   + PFD+     E+  G  VE+ G    +  +     +       
Sbjct: 173 WPLAMMWFISTIAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALT 232

Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
             +FLG    +TF  P + T       ++K L      + I   +PRF  DQ     WK
Sbjct: 233 IILFLGAYNNSTF--PEMYT----ANFMLKALLFTTFFLWIRASYPRFRYDQLMHLLWK 285


>sp|O80003|NUM1_NYCNO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3372823|gb|AAC28345.1|
           (AF065104) NADH dehydrogenase subunit 1 [Nyctalus
           noctula] >gi|3372835|gb|AAC28349.1| (AF065108) NADH
           dehydrogenase subunit 1 [Nyctalus noctula]
           >gi|3372838|gb|AAC28350.1| (AF065109) NADH dehydrogenase
           subunit 1 [Nyctalus noctula]
           Length = 301
           
 Score = 71.8 bits (173), Expect = 1e-11
 Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 23/299 (7%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK--E 56
           +   I ILL   F+  +     RKV   +  R GP I       QPI D +KLF K+  +
Sbjct: 1   LTTIIPILLAVAFLTLLE----RKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFIKEPLQ 56

Query: 57  NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAM 115
            +T  +   F I   L  T+  +M+IPL     L      IL    L  + +  I+++  
Sbjct: 57  PLTSSLAL-FIIAPTLALTLALMMWIPLPMPHPLINMNLSILFMLALSSLAVYAILWSGW 115

Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
           +S + YA IGA RA+   ++ +V L   I+++    G+F+   ++  Q+ + W I  +P 
Sbjct: 116 ASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSFTLSTLITTQE-YTWLI--MPS 172

Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
              A+ + I   A   + PFD+     E+  G  VE+ G    +  +     +       
Sbjct: 173 WPLAMMWFISTIAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALT 232

Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
             +FLG    +TF  P + T       ++K L      + I   +PRF  DQ     WK
Sbjct: 233 IILFLGAYNNSTF--PEMYT----ANFMLKALLFTTFFLWIRASYPRFRYDQLMHLLWK 285


>sp|O78707|NU1M_TRIVU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3401919|dbj|BAA32116.1|
           (AB011224) NADH dehydrogenase subunit 1 [Trichosurus
           vulpecula]
           Length = 318
           
 Score = 71.8 bits (173), Expect = 1e-11
 Identities = 71/298 (23%), Positives = 128/298 (42%), Gaps = 17/298 (5%)

Query: 5   IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-N 57
           I+N +L ++           + RK    +  R GP I       QPI D +KLF K+   
Sbjct: 3   IINLLLYIIPILLAVAFLTLVERKALGYMQFRKGPNIVGPYGLLQPIADAVKLFTKEPLR 62

Query: 58  VTHGVIFDFGIVFALGATILALMFIPLGSI-SVLRAYGDLILITFLLEIPMLGIMFAAMS 116
                I  F I   L  T+   ++ PL    S++     L+ I  L  + +  I+++  +
Sbjct: 63  PLTSSISMFIIAPILALTLAFTIWTPLPMPHSLIDLNLGLLFILALSGLSVYSILWSGWA 122

Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
           S   YA +GA RA+   ++ +V L   ++++    G+F+   +++ Q+     +   PL 
Sbjct: 123 SNTKYALMGALRAVAQTISYEVTLAIILLSIMLINGSFTLKNLIITQENMWLIMTTWPL- 181

Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
              + + I   A   + PFD+     E+  G  VE+      +  +     + A     +
Sbjct: 182 --TMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIMAMNAMTT 239

Query: 237 NIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
            +FLG ++   F+   LNTL+     +IK   + F+ + +   +PRF  DQ     WK
Sbjct: 240 ILFLGSSINHNFTH--LNTLS----FVIKTALLTFMFLWVRASYPRFRYDQLMYLLWK 291


>gi|7374120 NADH dehydrogenase subunit 1 [Penaeus monodon]
           >gi|7243617|gb|AAF43378.1|AF217843_7 (AF217843) NADH
           dehydrogenase subunit 1 [Penaeus monodon]
           Length = 312
           
 Score = 71.8 bits (173), Expect = 1e-11
 Identities = 73/305 (23%), Positives = 130/305 (41%), Gaps = 29/305 (9%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFG 53
           M  ++V   L+L+    VG  F+ ++ RK+   +  R GP       + QP  D +KLF 
Sbjct: 1   MTLIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFT 60

Query: 54  KKENV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGI 110
           K++ +   ++ + + F  VF+L  +++  + +P   + ++      +       + +   
Sbjct: 61  KEQTLPVMSNFLPYYFSPVFSLFVSLIVWLVMPY-ELGLMNFTMSTLFFLCCTSLGVYTT 119

Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
           M A  SS + Y+ +G+ RA+   ++ +V L   +++     G F      + Q+      
Sbjct: 120 MSAGWSSNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGGFDLCLFSLYQRDVWLLW 179

Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFG-GKYLGILQVQHAIGLF 229
           F  PL L   A  +   A   + PFD      E+  G   E+  G +  I   ++A  LF
Sbjct: 180 FTFPLSLIWFASCL---AETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILF 236

Query: 230 AETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAA 289
              LF S IFLGG +I+ F               +K + V F  + +    PRF  D+  
Sbjct: 237 MSMLF-SLIFLGGDLISPF-------------YYLKLVMVAFAFVWVRGTLPRFRYDKLM 282

Query: 290 KFYWK 294
              WK
Sbjct: 283 YLAWK 287


>gb|AAF66627.1| (AF142997) NADH dehydrogenase subunit 1 [Pteronotus macleayii]
           Length = 293
           
 Score = 71.8 bits (173), Expect = 1e-11
 Identities = 71/303 (23%), Positives = 132/303 (43%), Gaps = 26/303 (8%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           +L +IV  +L + + T V        RK+   +  R GP +       QPI D +KLF K
Sbjct: 6   LLSMIVPVLLAVAFLTLVE-------RKILGYMQLRKGPNVVGPHGLLQPIADAVKLFTK 58

Query: 55  K--ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIM 111
           +    +T  +   F I   L  T+   M+IPL     L      +L    +  + +  I+
Sbjct: 59  EPLRPLTSSIAM-FIIAPILALTLALTMWIPLPMPHPLINMNLSVLFMLAMSSLAVYSIL 117

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
           ++  +S + YA IGA RA+   ++ +V L   ++++    G+++   +++ Q+ + W ++
Sbjct: 118 WSGWASXSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSYTLSTLIITQE-YMWLMY 176

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
             P    A+ + I   A   + PFD+     E+  G  VE+      +  +     +   
Sbjct: 177 --PAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYSXGXFALFFLAEYANIXMM 234

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
               + +FL       +++PI+  L T    +IK + +    + I   +PRF  DQ    
Sbjct: 235 NSLTTXLFL-----XAYNNPIMPELYTTN-FMIKTMLLTMSFLWIRASYPRFRYDQLMHL 288

Query: 292 YWK 294
            WK
Sbjct: 289 LWK 291


>emb|CAC08255.1| (AL392146) NADH dehydrogenase subunit [Streptomyces coelicolor]
           Length = 322
           
 Score = 71.8 bits (173), Expect = 1e-11
 Identities = 81/309 (26%), Positives = 134/309 (43%), Gaps = 34/309 (11%)

Query: 2   LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY-------QPIIDTIKLFGK 54
           LR++V  ++ L +   VG        KV A +  R+GP          Q + D +K F +
Sbjct: 9   LRLLVVFVVFLTFPLIVG----QTEHKVMAHMQGRLGPMYAGGFHGWAQLVADGVK-FAQ 63

Query: 55  KENVTHGV----IFDFGIVFALGATILALMFIPLGSISVLRAYGDLI-----LITFLLEI 105
           KE+V        IF      AL   +L L+ IP+G      A G ++      +  ++ +
Sbjct: 64  KEDVVPADADRRIFQLAPAVALLPYLLVLLAIPVGPGE--GAVGQVVDAGVFFVLAVMGV 121

Query: 106 PMLGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQV 165
            +LG + A  SS N ++ +G  R    LLA ++P+     ++A   GT S   I+ A + 
Sbjct: 122 GVLGSLMAGWSSANKFSLLGGLRTAAQLLAYELPMLLTAASVAMAAGTVSLVGILDAFE- 180

Query: 166 HGWSIFHLP-LLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQH 224
             W  + LP  ++ AI + +   A   + PFD+ +A  EI  G   E+ G    +  +  
Sbjct: 181 --W--WWLPWQIVGAIVFFVAGLAELQRPPFDMPVADSEIIFGAYTEYTGLRFALFLLAE 236

Query: 225 AIGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFT 284
             G+       + +FLGG     + +  L  + T    L+K   + FV I +   +PR  
Sbjct: 237 YAGIVVLCGLTTVLFLGG-WHGPWGADGLGWVWT----LLKAAVLAFVVIWLRVTYPRLR 291

Query: 285 IDQAAKFYW 293
            DQ  K  W
Sbjct: 292 EDQLQKLSW 300


>gb|AAK40660.1| NADH dehydrogenase subunit H  (NuoH) [Sulfolobus solfataricus]
           Length = 352
           
 Score = 71.4 bits (172), Expect = 1e-11
 Identities = 81/339 (23%), Positives = 141/339 (40%), Gaps = 54/339 (15%)

Query: 2   LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGP--------PIYQPIIDTIKLFG 53
           L VI   ++  L    V   F    RK  A V  R GP         I Q   D IK   
Sbjct: 18  LTVIFPGLIFTLIFLLVTIWFE---RKAAAIVQLRYGPYYASKRLGGILQLFADAIKFVF 74

Query: 54  KKENVTHGV---IFDFGIVFALGATILALMFIPLGSI----SVLRAYGDL---------I 97
            +  + +GV   ++    V  L    L +  IP+ +I    S+L  Y  +         I
Sbjct: 75  SEIIIPNGVNQTLYAISPVLVLIFAFLPMALIPISTIPTQGSILSVYHGIFYDTQIHQGI 134

Query: 98  LITFLLEIPMLGIM-----------FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVA 146
           L+ + +E  ++GI+           F A ++ N +A +G+ R     ++  V +  + +A
Sbjct: 135 LVPYFIEYNLIGIIALESLYPILVIFLAWNTNNRFAIVGSIREAYLSVSYDVLIIISTLA 194

Query: 147 LAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISL 206
           L   Y T    +IV +  + G+    +   +AA  + + +     + PF+I+ A  E+ +
Sbjct: 195 LGLEYHTLDVAKIVTSG-IPGF----IANPIAAFVFLVAMLIGSSRFPFEIVEAETELVI 249

Query: 207 GPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGGAV-ITTFSSPILNTLATLGVLLIK 265
           GP  E+ G    +      +      + F ++FLGG +  T F   I          + K
Sbjct: 250 GPYTEYSGFLFVLTMAGSYVANLVYAILFVDLFLGGWLPFTGFVGAIFT--------VFK 301

Query: 266 QLAVLFVAILISTIFPRFTIDQAAKFYWKW--PTIIAAL 302
              V+F A+ +  ++ R+ IDQA +  WK+  P  +A+L
Sbjct: 302 AAIVVFFAVFLRAVYGRYRIDQALRGSWKYFFPLALASL 340


>emb|CAA70708.1| (Y09524) NADH dehydrogenase subunit 1 [Branchiostoma lanceolatum]
           Length = 313
           
 Score = 71.4 bits (172), Expect = 1e-11
 Identities = 86/308 (27%), Positives = 137/308 (43%), Gaps = 39/308 (12%)

Query: 4   VIVNAILILLY--ATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           +I++ I I LY     +   F+ +  RKV   V  R GP +       QPI D +KLF K
Sbjct: 1   MILSVIHIFLYFVPVLLAVAFLTLTERKVIGYVQLRKGPNVVGPYGLLQPIADGVKLFIK 60

Query: 55  ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDL-ILITFLLEIPMLG- 109
              K + ++  +F F  + AL   +L  M +PL     + A+ +L   + F+L IP L  
Sbjct: 61  EPIKPSSSNPSVFFFAPMLALILALLLWMPVPL-----MDAFIELNFAVLFVLAIPSLSV 115

Query: 110 --IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
             IM +  SS + YA +GA RA+  +++ +V LG  I++L    G F+  +   AQ+   
Sbjct: 116 YSIMASGWSSNSKYALLGALRAVAQMVSYEVSLGLIILSLICLVGGFNLAQFFSAQEEVM 175

Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAI 226
             +   PL    I + I   A   + PFD+     E+  G  VE+ GG +      ++A 
Sbjct: 176 LMLSCWPL---GIMWFISTVAETNRSPFDLTEGESELVSGFNVEYSGGPFALFFLAEYA- 231

Query: 227 GLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
                 + F N+ L   +       +L     +G+     LA L++    S  +P F  D
Sbjct: 232 -----NILFMNV-LSALLFLAAHFSLLGVAVKVGL-----LAGLYLWFRAS--YPSFRYD 278

Query: 287 QAAKFYWK 294
           Q     WK
Sbjct: 279 QLMHLAWK 286


>gi|5835807 NADH dehydrogenase subunit 1 [Gadus morhua]
           >gi|2499230|sp|P55779|NU1M_GADMO NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431936|pir||T11820 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
           Atlantic cod mitochondrion >gi|3805890|emb|CAA68106.1|
           (X99772) NADH dehydrogenase 1 [Gadus morhua]
           Length = 323
           
 Score = 71.4 bits (172), Expect = 1e-11
 Identities = 81/309 (26%), Positives = 136/309 (43%), Gaps = 28/309 (9%)

Query: 1   MLRVIVNAIL---ILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIK 50
           M  ++V+ IL   I +    +   F+ +I RKV   +  R GP I       QPI D +K
Sbjct: 1   MTNIVVSYILNPLIYMVPVLLAVAFLTLIERKVLGYMQLRKGPNIVGPYGLLQPIADGVK 60

Query: 51  LFGK---KENVTHGVIFDFGIV-FALGATILALMFIPLGSISVLRAYGDLILITFLLEIP 106
           LF K   + + +   +F   ++   L  T+ A M +P     V      ++ +  L  + 
Sbjct: 61  LFIKEPIRPSTSSPSLFVLPVLALTLALTLWAPMPMPF---PVADLNLSILFVLALSSLA 117

Query: 107 MLGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH 166
           +  I+ +  +S + YA +GA RA+   ++ +V LG  ++++  + G F+       Q+  
Sbjct: 118 VYSILGSGWASNSKYALVGALRAVAQTISYEVSLGLILLSVIIFSGGFTLQTFSTTQEAT 177

Query: 167 GWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHA 225
             ++   PL  AA+ Y   L+    + PFD+     E+  G  VE+ GG +      ++A
Sbjct: 178 WLALPAWPL--AAMWYISTLEET-NRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYA 234

Query: 226 IGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTI 285
             L   TL  + +FLG +  TT       TL T   LL        V + +   +PRF  
Sbjct: 235 NILLMNTLS-AVLFLGSSYSTTMPEFTSLTLMTKAALLS------MVFLWVRASYPRFRY 287

Query: 286 DQAAKFYWK 294
           DQ     WK
Sbjct: 288 DQLMHLVWK 296


>emb|CAA27295.1| (X03660) NADH hydrogenase subunit I (aa 1-359) [Acremonium
           chrysogenum] >gi|7544703|gb|AAA32171.2| (M24233) NADH
           dehydrogenase [Acremonium chrysogenum]
           Length = 359
           
 Score = 71.4 bits (172), Expect = 1e-11
 Identities = 83/331 (25%), Positives = 134/331 (40%), Gaps = 45/331 (13%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
           M+ ++ N IL+L     V ++ +   RK  A + RR+GP       + Q   D +KL  K
Sbjct: 7   MISILENLILMLPALLVVAYVTVAE-RKTMASMQRRLGPNAVGYYGLLQAFADALKLILK 65

Query: 55  K---ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLIL-ITFLLEIPML-- 108
           +       + ++F  G +  L   +L    IP G    L    D+ L I F+L +  L  
Sbjct: 66  EYVAPTQANIILFFLGPIVTLVFALLGYAVIPYGPGLSL---SDMELGILFMLAVSSLAT 122

Query: 109 -GIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
            GI+ A  S+ + YA +G+ R+   L++ ++ L   ++ +     + +    V  Q++  
Sbjct: 123 YGILLAGWSANSKYAFLGSLRSTAQLISYELVLSSVLLIIILITNSLNLNLNVQFQKII- 181

Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
           W    LPLL   I + I   A   + PFD+  A  E+  G M E          +     
Sbjct: 182 W--LALPLLCILIIFFIGSVAETNRAPFDLAEAESELVSGFMTEHAAVIFVFFFLAEYAS 239

Query: 228 LFAETLFFSNIFLGGAVIT-------------------------TFSSPILNTLATLGVL 262
           +    +  S +FLGG +I                            +S   N L T   L
Sbjct: 240 IVLMCILTSILFLGGYLIEFDYSYLLYNYYYFDIGSSYSLMREELLNSTSFNGLLTSITL 299

Query: 263 LIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
            IK  A++F+ I +   FPR   DQ   F W
Sbjct: 300 GIKTSAMVFIFIWVRASFPRIRFDQLMSFCW 330


>gi|5835514 NADH dehydrogenase subunit 1 [Branchiostoma lanceolatum]
           >gi|5881426|ref|NP_007768.1| NADH dehydrogenase subunit
           1 [Branchiostoma floridae]
           >gi|8488994|sp|O21000|NU1M_BRALA NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431899|pir||B71390 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - common
           lancelet mitochondrion >gi|2655392|gb|AAB88002.1|
           (AF098298) NADH dehydrogenase subunit 1 [Branchiostoma
           floridae] >gi|3292991|emb|CAA76247.1| (Y16474) NADH
           dehydrogenase subunit 1 [Branchiostoma lanceolatum]
           Length = 313
           
 Score = 71.4 bits (172), Expect = 1e-11
 Identities = 81/304 (26%), Positives = 134/304 (43%), Gaps = 31/304 (10%)

Query: 4   VIVNAILILLY--ATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           +I++ I I LY     +   F+ +  RKV   V  R GP +       QPI D +KLF K
Sbjct: 1   MILSVIHIFLYFVPVLLAVAFLTLTERKVIGYVQLRKGPNVVGPYGLLQPIADGVKLFIK 60

Query: 55  ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
              K + ++  +F F  + AL   +L  M +PL    +   +  L ++  +  + +  IM
Sbjct: 61  EPIKPSSSNPSVFFFAPMLALILALLLWMPVPLMDAFIELNFAVLFVLA-ISSLSVYSIM 119

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
            +  SS + YA +GA RA+  +++ +V LG  I++L    G F+  +   AQ+     + 
Sbjct: 120 ASGWSSNSKYALLGALRAVAQMVSYEVSLGLIILSLICLVGGFNLAQFFSAQEEVMLMLS 179

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFA 230
             PL    I + I   A   + PFD+     E+  G  VE+ GG +      ++A     
Sbjct: 180 CWPL---GIMWFISTVAETNRSPFDLTEGESELVSGFNVEYSGGPFALFFLAEYA----- 231

Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
             + F N+ L   +       +L     +G+     LA L++    S  +PRF  DQ   
Sbjct: 232 -NILFMNV-LSALLFLAAHFSLLGVAVKVGL-----LAGLYLWFRAS--YPRFRYDQLMH 282

Query: 291 FYWK 294
             WK
Sbjct: 283 LAWK 286


>sp|O78702|NU1M_MANTE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399743|dbj|BAA32111.1|
           (AB011219) NADH dehydrogenase subunit 1 [Manis
           tetradactyla]
           Length = 318
           
 Score = 71.4 bits (172), Expect = 1e-11
 Identities = 72/303 (23%), Positives = 131/303 (42%), Gaps = 26/303 (8%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           +L  I+  +L + + T          RKV   +  R GP I       QPI D +KLF K
Sbjct: 6   LLTTIIPVLLAVAFLTLAE-------RKVLGYMQLRKGPNIVGPWGLLQPIADAVKLFTK 58

Query: 55  K--ENVTHGVI-FDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
           +    +T  ++ F    + AL   +   M +P+    +    G L ++  +  + +  I+
Sbjct: 59  EPLRPLTSSIMMFIMAPILALALALTMWMPLPMPYPLINMNLGVLFMLA-MSSLAVYSIL 117

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
           ++  +S + YA IGA RA+   ++ +V L   ++++    G+F+   +++ Q+   W + 
Sbjct: 118 WSGWASNSKYALIGANRAVAQTISYEVTLAIILLSVLLMSGSFTLSTLIITQE-KLWLL- 175

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
            +P    A+ + I   A   + PFD+     E+  G  VE+      +  +     +   
Sbjct: 176 -VPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMM 234

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
               + +FLGG       +P L T   +  +LI  +A L+    I   +PRF  DQ    
Sbjct: 235 NALSTTLFLGG--FHNSYNPSLYTTNFIMKVLILTMAFLW----IRASYPRFRYDQLMHL 288

Query: 292 YWK 294
            WK
Sbjct: 289 LWK 291


>gb|AAF78602.1|AF260826_1 (AF260826) NADH subunit 1 [Cochliomyia hominivorax]
           Length = 312
           
 Score = 71.4 bits (172), Expect = 1e-11
 Identities = 78/307 (25%), Positives = 137/307 (44%), Gaps = 35/307 (11%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
           +L +I + +LI+     V F+ + + RKV   +  R GP       I QP  D IKLF K
Sbjct: 4   LLFIISSLLLIIFVLVSVAFLTL-LERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTK 62

Query: 55  KEN---VTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGI- 110
           ++    +++ + + F  +F+L  ++L  M +P+     ++ +   + + F L    LG+ 
Sbjct: 63  EQTYPLLSNYISYYFSPIFSLFLSLLVWMCMPM----FVKLFSFNLGLLFFLCCTSLGVY 118

Query: 111 --MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
             M A  SS + YA +G  RA+   ++ +V L   +++     G ++   +    Q+  W
Sbjct: 119 TVMIAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFIFLIGGYNML-MFYKYQMFIW 177

Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFG-GKYLGILQVQHAIG 227
            +F +   +A + + I L A   + PFD      E+  G  VE+  G +  I   ++A  
Sbjct: 178 FLF-IMFPMALVWFSISL-AETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASI 235

Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
           LF   LF   +FLG  + +              +  IK   V F+ I +    PRF  D+
Sbjct: 236 LFMSMLFC-VMFLGSDIFSF-------------LFYIKLTFVSFMFIWVRGTLPRFRYDK 281

Query: 288 AAKFYWK 294
                WK
Sbjct: 282 LMYLAWK 288


>emb|CAA23994.1| (V00650) URF 1 [Emericella nidulans]
           Length = 352
           
 Score = 71.0 bits (171), Expect = 2e-11
 Identities = 85/340 (25%), Positives = 136/340 (40%), Gaps = 61/340 (17%)

Query: 2   LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKK 55
           L VIV A+L + + T          RK  A + RR+GP       + Q   D +KL  K+
Sbjct: 11  LLVIVPALLSVAFVTVAE-------RKTMASMQRRLGPNAVGYYGLLQAFADALKLLLKE 63

Query: 56  ---ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPML---G 109
                  + ++F  G +  L  ++L  + IP GS   +  Y   + I ++L +  L   G
Sbjct: 64  YIAPTQANILLFFLGPIITLIFSLLGYLVIPFGSGLDISDYN--LGILYMLAVSSLATYG 121

Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
           I+ A  S+ + YA +G+ R+   L++ ++ L   I+ +    G+ +   I+ +Q+V    
Sbjct: 122 ILLAGWSANSKYAFLGSLRSTAQLISYELILSSVILLVILLTGSLNIITIIESQRVVNLL 181

Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVE------------------ 211
               PL L      I   A   + PFD+  A  E+  G M E                  
Sbjct: 182 FPLFPLFLVFFIGSI---AETNRAPFDLAEAESELVSGFMTEHSASIFVFFFLAEYASIV 238

Query: 212 ---------FGGKYLGILQVQHAIGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVL 262
                    F G YL I+ +   + +    +  +N  L    +   SSPI         L
Sbjct: 239 LICILNSILFLGGYLSIIPLDFIVNILNLFVITNNTILFDIFVHISSSPIN--------L 290

Query: 263 LIKQLAVLFVAILISTIFPRFTIDQAAKFYWK--WPTIIA 300
            +K   ++FV I +   FPR   DQ     W    P IIA
Sbjct: 291 ALKTAFLIFVFIWVRASFPRIRFDQLMSVCWTVLLPIIIA 330


>gi|5835374 NADH dehydrogenase subunit 1 [Latimeria chalumnae]
           >gi|3122437|sp|O03847|NU1M_LATCH NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431901|pir||A58892 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
           coelacanth mitochondrion >gi|1916818|gb|AAC60318.1|
           (U82228) NADH dehydrogenase subunit 1 [Latimeria
           chalumnae]
           Length = 323
           
 Score = 71.0 bits (171), Expect = 2e-11
 Identities = 82/308 (26%), Positives = 136/308 (43%), Gaps = 38/308 (12%)

Query: 2   LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK- 54
           L VI+  +L + + T +        RKV   +  R GP I       QP+ D +KLF K 
Sbjct: 12  LAVIIPILLAVAFLTLIE-------RKVLGYMQLRKGPNIVGPYGLLQPLADGLKLFIKE 64

Query: 55  --KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMF 112
             + + +  ++F    + AL   +   + +PL         G L ++  +  + +  I+ 
Sbjct: 65  PVRPSTSSPLLFITTPMLALTMALTLWLPLPLPHPMTNLNLGMLFILA-ISSLTVYSILG 123

Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYG-----TFSTYEIVMAQQVHG 167
           +  +S   YA IGA RA+   ++ +V LG  ++A+  + G     TF+T +  +     G
Sbjct: 124 SGWASNLKYALIGALRAVAQTISYEVSLGLILLAMIIFAGGFTLTTFNTSQETIWLLTPG 183

Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAI 226
           W        LAA+ Y   L A   + PFD+     E+  G  VE+ GG +      ++A 
Sbjct: 184 WP-------LAAMWYISTL-AETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 235

Query: 227 GLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
            L   TL  S I   GA+     +PI   L ++  L+IK  A+  + + +   +PRF  D
Sbjct: 236 ILLMNTL--STILFMGAM----HNPITPELTSIN-LMIKASALSMLFLWVRASYPRFRYD 288

Query: 287 QAAKFYWK 294
           Q     WK
Sbjct: 289 QLMHLVWK 296


>gi|5835541 NADH dehydrogenase subunit 1 [Alligator mississippiensis]
           >gi|6093544|sp|O47868|NU1M_ALLMI NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431951|pir||T11274 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1
           [similarity] - American alligator mitochondrion
           >gi|2916729|emb|CAA73561.1| (Y13113) NADH dehydrogenase
           subunit 1 [Alligator mississippiensis]
           >gi|3219515|gb|AAD09980.1| (AF069428) NADH dehydrogenase
           subunit I [Alligator mississippiensis]
           Length = 321
           
 Score = 71.0 bits (171), Expect = 2e-11
 Identities = 73/307 (23%), Positives = 129/307 (41%), Gaps = 30/307 (9%)

Query: 2   LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK 55
           L ++  A+LI+     V F+   + RK+   +  R GP I       QP  D +KL  K+
Sbjct: 4   LTIVPPALLIISILMAVAFL-TALERKIMGHMQLRKGPNIVGPLGLLQPFADGLKLITKE 62

Query: 56  ENVTHGVIFDFGIVFALGATILAL-MFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFA 113
             +         I+    A +LAL M+ PL   S L      L+L+  +  + +   +++
Sbjct: 63  LTLPLLATPTLFILAPTAALMLALAMWSPLPMPSPLADLNLGLLLLLAMSSLMVYSFLWS 122

Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHL 173
             SS + YA +GA RA+   ++ +V L   ++++    G FS + + + Q+         
Sbjct: 123 GWSSNSKYALMGAMRAVAQTISYEVTLAIIVLSIVLLSGGFSLHTLTVTQE--------- 173

Query: 174 PLLLAAIAYDIVLQ------AMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
           PL LA   +  ++       A   + PFD+     E+  G  VE+      +  +     
Sbjct: 174 PLYLALATWPSMMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYSASPFALFFLAEYAN 233

Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
           +       + +FL  +  T    P L T+A +   L+  ++ L+V       +PRF  DQ
Sbjct: 234 IMLMNTLTTTLFLSPSTPTFL--PALFTIALMSKALLLTMSFLWVR----ASYPRFRYDQ 287

Query: 288 AAKFYWK 294
                WK
Sbjct: 288 LMHLLWK 294


>gb|AAF61226.1|AF234894_1 (AF234894) NADH dehydrogenase I [Haemulon plumieri]
           Length = 324
           
 Score = 71.0 bits (171), Expect = 2e-11
 Identities = 79/307 (25%), Positives = 139/307 (44%), Gaps = 30/307 (9%)

Query: 4   VIVNAI--LILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           VI++ I  L L+    +   F+ ++ RKV   +  R GP +       QPI D +KLF K
Sbjct: 5   VIIHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64

Query: 55  ---KENVTHGVIFDFG--IVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLG 109
              + + +  ++F     +  +L  T+ A M  P   + +      ++ I  L  + +  
Sbjct: 65  EPVRPSTSSPLLFLLAPMLALSLALTLWAPMPFPYPMVDLNLG---ILFILALSSLTVYS 121

Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
           I+ +  +S + YA IGA RA+   ++ +V LG  ++    + G F+     +AQ+   W 
Sbjct: 122 ILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLGTIIFTGGFTLQTFNVAQE-SVWL 180

Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGL 228
           I  LP    A  + +   A   + PFD+     E+  G  VE+ GG +      ++A  L
Sbjct: 181 I--LPAWPLAAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIL 238

Query: 229 FAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL-ISTIFPRFTIDQ 287
              TL  + +F+G +      +P+   L  +   L+ + A+L +A L +   +PRF  DQ
Sbjct: 239 LMNTL-SATLFMGAS-----HAPLYPELTAIN--LMTKAALLSIAFLWVRASYPRFRYDQ 290

Query: 288 AAKFYWK 294
                WK
Sbjct: 291 LMHLIWK 297


>gb|AAF81391.1|AF164590_2 (AF164590) NADH dehydrogenase subunit 1 [Bactrocera oleae]
           Length = 343
           
 Score = 71.0 bits (171), Expect = 2e-11
 Identities = 73/307 (23%), Positives = 135/307 (43%), Gaps = 35/307 (11%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
           +L VI   IL++     V F+ + + RKV   +  R GP       I QP  D IKLF K
Sbjct: 4   ILSVIGGLILVICVLVSVAFLTL-LERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTK 62

Query: 55  KEN---VTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLG-- 109
           ++    +++ + + F  +F+L  +++A + IPL     ++ +   + + F L    LG  
Sbjct: 63  EQTYPLLSNYISYYFSPIFSLFLSLVAWLCIPL----FVKLFSFNLGLLFFLCCASLGVY 118

Query: 110 -IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
            +M A  SS + YA +G  RA+   ++ +V +   +++     G+++  +    Q+   +
Sbjct: 119 TVMVAGWSSNSNYALLGGLRAVAQTISYEVSMALVLLSFVFLIGSYNILDFFYYQKFVWF 178

Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIG 227
            +   P+ L    +  +  A   + PFD      E+  G  +E+  G +  I   ++A  
Sbjct: 179 LVILFPMKL---VWFCICLAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFMAEYAKI 235

Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
           LF   + F  IFLG  + +              +  +K   + F+ I +    PRF  D+
Sbjct: 236 LFM-IMLFCVIFLGCDLFSI-------------MFYLKLTFISFMFIWVRGTLPRFRYDK 281

Query: 288 AAKFYWK 294
                WK
Sbjct: 282 LMYLAWK 288


>gi|5835597 NADH dehydrogenase subunit 1 [Scyliorhinus canicula]
           >gi|3122444|sp|O21408|NU1M_SCYCA NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431952|pir||T11300 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
           smaller spotted catshark mitochondrion
           >gi|2340024|emb|CAA70713.1| (Y09526) NADH dehydrogenase
           subunit 1 [Scyliorhinus canicula]
           >gi|3618231|emb|CAA76019.1| (Y16067) NADH 1
           [Scyliorhinus canicula]
           Length = 324
           
 Score = 70.2 bits (169), Expect = 3e-11
 Identities = 74/309 (23%), Positives = 134/309 (42%), Gaps = 35/309 (11%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           ++  +   I ILL   F+      I RK+   +  R GP I       QPI D +KLF K
Sbjct: 9   LINPLAYIIPILLATAFLTL----IERKILGYMQFRKGPNIVGPYGLLQPIADGLKLFIK 64

Query: 55  ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
              + + +    F      AL   +L  M +PL   S++     L+ I  +  + +  I+
Sbjct: 65  EPIRPSASSRSYFLATPTVALALALLMWMPLPLPH-SIINLNLGLLFILAISSLTVYTIL 123

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ-----VH 166
            +  +S + YA +GA RA+   ++ +V LG  ++++  + G F+ +   +AQ+     + 
Sbjct: 124 GSGWASNSKYALMGALRAVAQTISYEVSLGLILLSMIIFAGGFTLHTFNLAQETIWLLIP 183

Query: 167 GWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAI 226
           GW +        A  + I   A   + PFD+     E+  G  +E+      +  +    
Sbjct: 184 GWPL--------AFMWYISTLAETNRAPFDLTEGESELVSGFNIEYAAGPFALFFLAEYT 235

Query: 227 GLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLL-IKQLAVLFVAILISTIFPRFTI 285
            +         +F+G     T  +P++  +++L +++    L VLF+ I  S  +PRF  
Sbjct: 236 NILLMNTLSVILFMG-----TSYNPLMPQISSLSLMMKASMLTVLFLWIRAS--YPRFRY 288

Query: 286 DQAAKFYWK 294
           DQ     WK
Sbjct: 289 DQLMHLVWK 297


>gi|5835861 NADH dehydrogenase subunit 1 [Daphnia pulex]
           >gi|7431954|pir||T11362 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - Daphnia pulex mitochondrion
           >gi|4927682|gb|AAD33242.1|AF117817_13 (AF117817) NADH
           dehydrogenase subunit 1 [Daphnia pulex]
           Length = 311
           
 Score = 70.2 bits (169), Expect = 3e-11
 Identities = 74/310 (23%), Positives = 129/310 (40%), Gaps = 40/310 (12%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFG 53
           M++VI+   L+++    VG  F  +  RK+   +  R GP       + QP  D IKLF 
Sbjct: 1   MIQVIL--FLVVVVCVLVGVAFFTLFERKLLGYIQLRKGPNKVGLGGVLQPFSDAIKLFS 58

Query: 54  KKE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGI 110
           K+    + ++   F     F+LG ++L  + IP    ++L     ++     L + + G+
Sbjct: 59  KEHVSPSTSNYSAFLIAPCFSLGLSLLMWLSIP-SFFNLLSFNKSVLFFLCGLGVGVYGL 117

Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGF-----AIVALAEYYGTFSTYEIVMAQQV 165
           + A  SS + Y+ IG  R +   ++ +V L        +V +    G+FS++      Q 
Sbjct: 118 LAAGWSSNSKYSLIGCLRGVAQTVSYEVSLVLILFTPLVVTVGYELGSFSSF------QE 171

Query: 166 HGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHA 225
           + W IF  P   A + + I   A   + PFD      E+  G   E+      ++ +   
Sbjct: 172 NLWFIFIFP--AAGLIWFISCLAETNRTPFDFAEGESELVSGYNTEYSSGGFALIMLAEY 229

Query: 226 IGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTI 285
             +   +  FS IFLGG             L + GV+        F+ + +    PRF  
Sbjct: 230 TSILFMSFLFSVIFLGG-------DCSFFVLVSFGVM-------AFIFVWVRGTLPRFRY 275

Query: 286 DQAAKFYWKW 295
           D+     WK+
Sbjct: 276 DKLMYLAWKF 285


>gi|8844984 NADH dehydrogenase subunit 1 [Typhlonectes natans]
           >gi|8650309|gb|AAF78147.1|AF154051_1 (AF154051) NADH
           dehydrogenase subunit 1 [Typhlonectes natans]
           Length = 320
           
 Score = 70.2 bits (169), Expect = 3e-11
 Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 23/300 (7%)

Query: 2   LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP-IYQPIIDTIKLFGKK--ENV 58
           L +I+  +L + + T      +G ++    +    +GP  + QP+ + +KLF K+    V
Sbjct: 10  LAMIIPVLLAVAFLTLAKQKVLGYMQ--VQKGPNIVGPTGLLQPVANGVKLFTKEPVRPV 67

Query: 59  THG-VIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSS 117
           T    +F    + AL  ++     +P+ S  VL     ++ +  L  + +  I+ +  +S
Sbjct: 68  TSSQTMFLIAPILALALSLTLWAPMPIPS-PVLDMNLGVLFVLALSSLAVYSILGSGWAS 126

Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
            + YA +GA R++   ++ +V LG  ++      GTF+    +  Q+   W +  LP   
Sbjct: 127 NSKYALMGALRSVAQTISYEVTLGLILLCTIFLSGTFTLSNFLYTQET-TWLL--LPSWP 183

Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
            A+ + I   A   + PFD+     E+  G  VE+ G          A+   AE   +SN
Sbjct: 184 MAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYAGG-------PFALFFLAE---YSN 233

Query: 238 IFLGGAVIT-TFSSPILNTLATLGV--LLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
           I L   + T  F SP L+  A L    ++IK +A+  + + +   +PRF  DQ     WK
Sbjct: 234 ILLMNTLSTIIFISPSLHLQAELSTSNIMIKTMALSSLFLWVRASYPRFRYDQLMHLVWK 293


>gi|5835709 NADH dehydrogenase subunit 1 [Squalus acanthias]
           >gi|6647631|sp|Q9ZZ54|NU1M_SQUAC NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN 1 >gi|7431920|pir||T11534 NADH
           dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - spiny
           dogfish mitochondrion >gi|4186096|emb|CAA77049.1|
           (Y18134) NADH dehydrogenase subunit 1 [Squalus
           acanthias]
           Length = 324
           
 Score = 69.9 bits (168), Expect = 4e-11
 Identities = 73/306 (23%), Positives = 129/306 (41%), Gaps = 34/306 (11%)

Query: 2   LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK 55
           L  IV  +L   + T V        RK+   +  R GP I       QPI D +KLF K+
Sbjct: 13  LAYIVPILLATAFLTLVE-------RKILGYMQFRKGPNIVGPYGLLQPIADGVKLFIKE 65

Query: 56  E-NVTHGVIFDFGIVFALGATILALMFIPLG-SISVLRAYGDLILITFLLEIPMLGIMFA 113
               +    F F     L  T+  LM++PL    +++     L+ I  +  + +  I+ +
Sbjct: 66  PVRPSTSSPFLFLATPTLALTLALLMWMPLPLPHAIINLNLGLLFILAVSSLTVYTILGS 125

Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ-----VHGW 168
             +S + YA +GA RA+   ++ +V LG  ++++  + G F+ +   + Q+     V GW
Sbjct: 126 GWASNSKYALMGALRAVAQTISYEVSLGLILLSMIIFTGGFTLHTFNLTQETVWLLVPGW 185

Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
            +        A+ + I   A   + PFD+     E+  G  VE+ G    +  +     +
Sbjct: 186 PL--------AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGSFALFFLAEYTNI 237

Query: 229 FAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQA 288
                    +F+G +   T   P ++T      L++K   +  + + I   +PRF  DQ 
Sbjct: 238 LMMNTLSVILFMGSSYDPTM--PQISTF----YLMMKATLLTLIFLWIRASYPRFRYDQL 291

Query: 289 AKFYWK 294
               WK
Sbjct: 292 MHLVWK 297


>pir||B81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 Cj1572c
           [similarity] - Campylobacter jejuni (strain NCTC 11168)
           >gi|6968989|emb|CAB73560.1| (AL139079) NADH
           dehydrogenase I chain H [Campylobacter jejuni]
           Length = 332
           
 Score = 69.9 bits (168), Expect = 4e-11
 Identities = 79/325 (24%), Positives = 139/325 (42%), Gaps = 37/325 (11%)

Query: 9   ILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQP------IIDTIKLFGKKENVTHGV 62
           I+I ++A+  G       RKV A   RRIGP +  P      + D IKLF K++ +    
Sbjct: 17  IIIAIFASLAGLATYAE-RKVLAYFQRRIGPDMVGPFGLIQLVADMIKLFTKEDIIPSN- 74

Query: 63  IFDFGIVFALGATILALM-FIPLGSISVL---RAYGDLIL-------ITFLLEIPMLGIM 111
                 +FA+   I A+  F+ L +I +L     +G +I        +  L  I   G+ 
Sbjct: 75  --SQKFIFAIAPLISAICAFVSLAAIPMLPEFTLFGRVIQPIVADINVALLFVIGTSGLC 132

Query: 112 FAA-----MSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEI--VMAQQ 164
           F A     ++S N ++ +GA R L+++++ +     A++A+    G+FS  +I    +  
Sbjct: 133 FYAVFLGGLASNNKWSILGAARGLVSIISYESVGALALIAIIMLVGSFSLVDINNYQSDG 192

Query: 165 VHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQH 224
              W IF  P  LA + + I L     + P  +     EI  G   E+ G   G+  +  
Sbjct: 193 FFSWLIFKQP--LAFVLFIIALFIETNRTPLCLTENDAEIVAGYGTEYSGLRWGMFFIGE 250

Query: 225 AIGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFT 284
              + A  +  + +FLGG     F+S     +    ++++K   + F        FP+  
Sbjct: 251 YTSMIAGAILVTLLFLGG-----FNS--FWIIPGWIMMIVKSSFIFFWYFWARAAFPQLR 303

Query: 285 IDQAAKFYWKWPTIIAALGAILASL 309
            DQ  K  +     +A L  ++ +L
Sbjct: 304 PDQVMKMCYLILIPLAVLNLLITAL 328


>gi|5835975 NADH dehydrogenase subunit 1 [Vidua chalybeata]
           >gi|7431927|pir||T11193 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - Vidua chalybeata mitochondrion
           >gi|4894502|gb|AAD32525.1|AF090341_1 (AF090341) NADH
           dehydrogenase subunit I [Vidua chalybeata]
           Length = 325
           
 Score = 69.5 bits (167), Expect = 5e-11
 Identities = 75/311 (24%), Positives = 138/311 (44%), Gaps = 38/311 (12%)

Query: 4   VIVNAILILLYAT--FVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           +++N I++L YA    +   F+ ++ RK+ + +  R GP I       QP+ D IKLF K
Sbjct: 6   ILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIK 65

Query: 55  ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
              + + +  ++F    + AL   I   + +PL   S+      ++ +  +  + +  I+
Sbjct: 66  EPIRPSTSSPILFIITPMLALTLAISIWVPLPL-PFSLADLNLGILFMLAMSSLAVYSIL 124

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
           ++  +S + YA IGA RA+   ++ +V L   ++A+    G F+   + + Q+   + IF
Sbjct: 125 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILLSGNFTLSALAVTQEPM-YLIF 183

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
             P    A+ + I   A   + PFD+     E+  G              V++A G FA 
Sbjct: 184 --PCWPLAMMWYISTLAETNRAPFDLTEGESELVSG------------FNVEYAAGPFA- 228

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLG--------VLLIKQLAVLFVAILISTIFPRF 283
            LFF   +    ++ T ++ +    + LG        VL  K L +    + +   +PRF
Sbjct: 229 -LFFLAEYANIMLMNTLTAILFFNPSLLGLQQELFPVVLATKVLLLSAGFLWVRASYPRF 287

Query: 284 TIDQAAKFYWK 294
             DQ     WK
Sbjct: 288 RYDQLMHLLWK 298


>gi|5836045 NADH dehydrogenase subunit 1 [Mustelus manazo]
           >gi|7431935|pir||T11764 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - Mustelus manazo mitochondrion
           >gi|3582410|dbj|BAA33037.1| (AB015962) NADH
           dehydrogenase subunit 1 [Mustelus manazo]
           Length = 324
           
 Score = 69.1 bits (166), Expect = 7e-11
 Identities = 72/303 (23%), Positives = 130/303 (42%), Gaps = 23/303 (7%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           ++  +   I ILL   F+      I RK+   +  R GP +       QPI D +KLF K
Sbjct: 9   LINPLAYIIPILLATAFLTL----IERKILGYMQFRKGPNVVGPYGLLQPIADGLKLFIK 64

Query: 55  ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
              + + +   +F      AL   +L  M +PL    +    G L+ I  +  + +  I+
Sbjct: 65  EPVRPSASSPFLFLATPTAALTLALLMWMPLPLPHPIINLNLG-LLFILAISSLTVYTIL 123

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
            +  +S + YA +GA RA+   ++ +V LG  ++++  + G F+ +     Q+     I 
Sbjct: 124 GSGWASNSKYALMGALRAVAQTISYEVSLGLILLSMIVFAGGFTLHTFNTTQETIWLLIP 183

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
             PL   A+ + I   A   + PFD+     E+  G  +E+ G    +  +     +   
Sbjct: 184 GWPL---ALMWYISTLAETNRAPFDLTEGESELVSGFNIEYAGGPFALFFLAEYTNILLM 240

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
                 +F+G +      +P+   L+T   L++K   + F+ + I   +PRF  DQ    
Sbjct: 241 NTLSVILFMGISY-----NPLFPQLSTFN-LMMKATLLTFIFLWIRASYPRFRYDQLMHL 294

Query: 292 YWK 294
            WK
Sbjct: 295 VWK 297


>gi|5835765 NADH dehydrogenase subunit 1 [Orycteropus afer]
           >gi|7431953|pir||T11337 NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain 1 - aardvark mitochondrion
           >gi|4691354|emb|CAB41621.1| (Y18475) NADH dehydrogenase
           subunit 1 [Orycteropus afer]
           Length = 317
           
 Score = 69.1 bits (166), Expect = 7e-11
 Identities = 73/303 (24%), Positives = 128/303 (42%), Gaps = 26/303 (8%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
           +L +I+  +L + + T V        RK    +  R GP I       QPI D  KLF K
Sbjct: 6   LLSLIIPILLAVAFLTLVE-------RKTLGYMQLRKGPNIVGPYGLLQPIADAAKLFIK 58

Query: 55  K--ENVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIM 111
           +     T   +  F I   L  T+   M+IPL     ++     ++ I  +  + +  I+
Sbjct: 59  EPLRPATSSTLM-FTIAPILALTLALTMWIPLPMPYPLINMNLGILFILAISSLAVYSIL 117

Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
           ++  +S + YA IGA RA+   ++ +V L   ++++    G+F+   + + Q+ H W I 
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVSLAIILLSVMLINGSFTLASLTITQE-HIWLI- 175

Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
            +P    A+ + I   A   + PFD+     E+  G  VE+      +  +     +   
Sbjct: 176 -IPTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMM 234

Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
               + +FLG     +F +     L T   +L K + +    + I   +PRF  DQ    
Sbjct: 235 NALTTLLFLG-----SFHNHAHPELFTTNFIL-KTMILTICFLWIRASYPRFRYDQLMHL 288

Query: 292 YWK 294
            WK
Sbjct: 289 LWK 291


>gb|AAA65487.1| (M57527) NDI [Rana catesbeiana]
           Length = 324
           
 Score = 68.7 bits (165), Expect = 9e-11
 Identities = 86/309 (27%), Positives = 143/309 (45%), Gaps = 32/309 (10%)

Query: 2   LRVIVNAILILLYAT--FVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLF 52
           ++++   +L LLY     +   F+ +I RK+   +  R GP +       QPI D +KLF
Sbjct: 1   MKLLFMYLLPLLYIAPILLAVAFLTLIERKILGYMQHRKGPNVVGPFGLLQPIADGVKLF 60

Query: 53  GKKENVTHGVIFDFGIVFALGATI-LALMFIPLGSISVLRAYGDLIL-ITFLLEIPMLG- 109
             KE +         ++F L  T+ LAL  I      +   Y +L L I F+L I  L  
Sbjct: 61  -IKEPIRPSTSSQ--LLFILAPTLALALAMIMWTPFPLPIPYSNLNLSILFILAISSLTV 117

Query: 110 --IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
             I+ +  +S + YA IGA RA+   ++ +V L   I+      G F+     ++Q+   
Sbjct: 118 YTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILCSVLLAGGFTLSAFAISQE--- 174

Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAI 226
           ++ F LPL    + + +   A   + PFD+     E+  G  VE+ GG +      ++A 
Sbjct: 175 FTWFILPLWPMFLMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 234

Query: 227 GLFAETLFFSNIFLGGAVIT-TFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTI 285
            L   TL  + IFLG  + + T ++ +L T A++       L++ F+ +  S  +PRF  
Sbjct: 235 ILMMNTLS-TIIFLGSCMSSLTLTTSLLMTKASI-------LSLCFLWVRAS--YPRFRY 284

Query: 286 DQAAKFYWK 294
           DQ     WK
Sbjct: 285 DQLMHLVWK 293


>sp|P16672|NU1M_RANCA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1
           Length = 325
           
 Score = 68.7 bits (165), Expect = 9e-11
 Identities = 86/309 (27%), Positives = 143/309 (45%), Gaps = 32/309 (10%)

Query: 2   LRVIVNAILILLYAT--FVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLF 52
           ++++   +L LLY     +   F+ +I RK+   +  R GP +       QPI D +KLF
Sbjct: 1   MKLLFMYLLPLLYIAPILLAVAFLTLIERKILGYMQHRKGPNVVGPFGLLQPIADGVKLF 60

Query: 53  GKKENVTHGVIFDFGIVFALGATI-LALMFIPLGSISVLRAYGDLIL-ITFLLEIPMLG- 109
             KE +         ++F L  T+ LAL  I      +   Y +L L I F+L I  L  
Sbjct: 61  -IKEPIRPSTSSQ--LLFILAPTLALALAMIMWTPFPLPIPYSNLNLSILFILAISSLTV 117

Query: 110 --IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
             I+ +  +S + YA IGA RA+   ++ +V L   I+      G F+     ++Q+   
Sbjct: 118 YTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILCSVLLAGGFTLSAFAISQE--- 174

Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAI 226
           ++ F LPL    + + +   A   + PFD+     E+  G  VE+ GG +      ++A 
Sbjct: 175 FTWFILPLWPMFLMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 234

Query: 227 GLFAETLFFSNIFLGGAVIT-TFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTI 285
            L   TL  + IFLG  + + T ++ +L T A++       L++ F+ +  S  +PRF  
Sbjct: 235 ILMMNTLS-TIIFLGSCMSSLTLTTSLLMTKASI-------LSLCFLWVRAS--YPRFRY 284

Query: 286 DQAAKFYWK 294
           DQ     WK
Sbjct: 285 DQLMHLVWK 293


>gb|AAF81367.1|AF164578_2 (AF164578) NADH dehydrogenase subunit 1 [Drosophila ananassae]
           Length = 314
           
 Score = 68.7 bits (165), Expect = 9e-11
 Identities = 79/307 (25%), Positives = 132/307 (42%), Gaps = 35/307 (11%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
           +L +I + +LI+     V F+ + + RKV   +  R GP       I QP  D IKLF K
Sbjct: 4   VLSLIGSLLLIICVLVSVAFLTL-LERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTK 62

Query: 55  KEN---VTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGI- 110
           ++    +++ + +    +F+L  ++   M +P      ++ Y   +   F L    LG+ 
Sbjct: 63  EQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF----FVKLYSFNLGGLFFLCCTSLGVY 118

Query: 111 --MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
             M A  SS + YA +G  RA+   ++ +V L   +++     G+++        Q++ W
Sbjct: 119 TVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMVYFYY-YQIYMW 177

Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFG-GKYLGILQVQHAIG 227
             F + L   A+ +  +  A   + PFD      E+  G  VE+  G +  I   ++A  
Sbjct: 178 --FLVILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYASI 235

Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
           LF   LF S IFLG  V + F               +K   + FV I      PRF  D+
Sbjct: 236 LFMSMLF-SVIFLGCDVFSLF-------------FYVKLTFISFVFIWARGTLPRFRYDK 281

Query: 288 AAKFYWK 294
                WK
Sbjct: 282 LMYLAWK 288


>gb|AAF81369.1|AF164579_2 (AF164579) NADH dehydrogenase subunit 1 [Drosophila malerkotliana]
           Length = 314
           
 Score = 68.7 bits (165), Expect = 9e-11
 Identities = 79/307 (25%), Positives = 131/307 (41%), Gaps = 35/307 (11%)

Query: 1   MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
           +L +I + +LI+     V F+ + + RKV   +  R GP       I QP  D IKLF K
Sbjct: 4   ILSLIGSLLLIICVLVSVAFLTL-LERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTK 62

Query: 55  KEN---VTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGI- 110
           ++    +++ + +    +F+L  ++   M +P      ++ Y   +   F L    LG+ 
Sbjct: 63  EQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF----FVKLYSFNLGGLFFLCCTSLGVY 118

Query: 111 --MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
             M A  SS + YA +G  RA+   ++ +V L   +++     G+++        Q++ W
Sbjct: 119 TVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFYY-YQIYMW 177

Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFG-GKYLGILQVQHAIG 227
             F + L   A+ +  +  A   + PFD      E+  G  VE+  G +  I   ++A  
Sbjct: 178 --FLIILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYASI 235

Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
           LF   LF S IFLG  V   F               +K   + FV I      PRF  D+
Sbjct: 236 LFMSMLF-SVIFLGCDVFNLF-------------FYVKLTFISFVFIWARGTLPRFRYDK 281

Query: 288 AAKFYWK 294
                WK
Sbjct: 282 LMYLAWK 288


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.332    0.148    0.436 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101470071
Number of Sequences: 2977
Number of extensions: 4096457
Number of successful extensions: 13749
Number of sequences better than 1.0e-10: 213
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 13286
Number of HSP's gapped (non-prelim): 222
length of query: 309
length of database: 189,106,746
effective HSP length: 51
effective length of query: 258
effective length of database: 158,583,909
effective search space: 40914648522
effective search space used: 40914648522
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 165 (68.7 bits)