BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0492 (nuoH) DE:NADH dehydrogenase I, subunit H
(309 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75113 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 603 e-172
pir||E71019 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 566 e-160
pir||C72281 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 215 7e-55
pir||T51315 probable CO-induced hydrogenase complex chain CooK [... 136 4e-31
gb|AAF65735.1|AF228525_5 (AF228525) F420H2 dehydrogenase subunit... 124 1e-27
pir||A75115 probable NADH dehydrogenase (ubiquinone) (EC 1.6.5.3... 118 6e-26
pir||B71018 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 117 1e-25
gi|11466757 ndh1 [Marchantia polymorpha] >gi|128619|sp|P06255|NU... 108 1e-22
emb|CAB44668.1| (AJ242867) NDH-A protein [Anabaena PCC7120] 106 3e-22
sp|P26522|NU1C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 >... 106 4e-22
pir||E70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 105 6e-22
gi|11466443 subunit 1 of NADH-plastoquinoneoxidoreductase [Mesos... 105 6e-22
emb|CAA76118.1| (Y16191) echB [Methanosarcina barkeri] 104 2e-21
gi|11499419 F420H2:quinone oxidoreductase, 41.2 kDa subunit, put... 103 2e-21
emb|CAA09812.1| (AJ011848) NADH dehydrogenase ND1 [Hordeum vulgare] 101 9e-21
gi|11467260 NADH dehydrogenase ND1 [Zea mays] >gi|400636|sp|P257... 100 3e-20
gi|11466852 NADH dehydrogenase ND1 [Oryza sativa] >gi|128620|sp|... 100 3e-20
sp|Q00242|NU1C_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 H... 99 5e-20
gi|11467870 subunit 1 of NADH-plastoquinoneoxidoreductase [Nephr... 97 2e-19
pir||H64364 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) - Metha... 97 3e-19
pir||F75060 probable hydrogenase (EC 1.18.99.1) chain 4 PAB1393 ... 96 4e-19
pir||E81991 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 96 4e-19
gi|11497586 NADH dehydrogenase ND1 subunit [Spinacia oleracea] >... 96 4e-19
gi|11466175 NADH dehydrogenase subunit 1 [Naegleria gruberi] >gi... 95 9e-19
pir||S37065 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain H... 95 1e-18
gb|AAG23680.1|AF288091_25 (AF288091) NADH dehydrogenase subunit ... 95 1e-18
emb|CAB67225.1| (AJ271079) NADH-plastoquinone oxidoreductase sub... 95 1e-18
gb|AAF03197.1|AF110138_29 (AF110138) NADH dehydrogenase subunit ... 94 2e-18
pir||E81219 NADH dehydrogenase I, H chain NMB0250 [imported] - N... 94 2e-18
sp|P33603|NUOH_ECOLI NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO... 94 2e-18
pir||H83314 NADH dehydrogenase I chain H PA2643 [imported] - Pse... 94 3e-18
pir||B65024 probable hydrogenase (EC 1.18.99.1) chain 4 b2483 [s... 92 6e-18
sp|P77858|HYFC_ECOLI HYDROGENASE-4 COMPONENT C >gi|1616952|gb|AA... 92 6e-18
gi|11466020 NADH dehydrogenase ND1 subunit [Nicotiana tabacum] >... 92 8e-18
sp|Q37165|NU1C_ARATH NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, ... 92 1e-17
sp|P16430|HYCD_ECOLI FORMATE HYDROGENLYASE SUBUNIT 4 (FHL SUBUNI... 91 2e-17
gi|7525090 NADH dehydrogenase ND1 [Arabidopsis thaliana] >gi|588... 91 2e-17
pir||B82822 NADH-ubiquinone oxidoreductase, NQO8 subunit XF0312 ... 90 2e-17
emb|CAC12095.1| (AL445066) NADH dehydrogenase, subunit I related... 90 3e-17
gi|9653247 NADH dehydrogenase subunit 1 [Chondrus crispus] >gi|1... 90 4e-17
pir||D75387 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 90 4e-17
gb|AAG19140.1| (AE005012) NADH dehydrogenase/oxidoreductase; Ndh... 90 4e-17
gi|11497479 NADH dehydrogenase (ubiquinone), subunit 1 [Protothe... 89 9e-17
pir||A71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 88 1e-16
sp|P06254|NU1C_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, ... 88 2e-16
pir||C64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 88 2e-16
gi|11465632 NADH dehydrogenase subunit 1 [Porphyra purpurea] >gi... 88 2e-16
sp|P48899|NU1M_CYACA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 87 3e-16
gi|8954370 NADH dehydrogenase subunit 1 [Cyanidioschyzon merolae... 87 3e-16
gi|9695396 NADH dehydrogenase subunit 1 [Phytophthora infestans]... 87 3e-16
emb|CAA69811.2| (Y08502) NADH dehydrogenase subunit 1 [Arabidops... 87 3e-16
sp|P57258|NUOH_BUCAI NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO... 87 3e-16
pir||B40358 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 86 5e-16
sp|Q60010|NUOH_SALTY NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO... 86 5e-16
sp|Q9ZCF7|NUOH_RICPR NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO... 86 6e-16
emb|CAC14152.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 86 6e-16
pir||S49576 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 85 8e-16
pir||E70419 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 85 1e-15
gb|AAF66631.1| (AF143001) NADH dehydrogenase subunit 1 [Rhinolop... 85 1e-15
gi|11467140 nad1 [Marchantia polymorpha] >gi|462756|sp|P26845|NU... 85 1e-15
sp|P31839|NU1M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 84 2e-15
gb|AAC69445.1| (AF009349) NADH dehydrogenase subunit 1 [Cucumari... 84 2e-15
gi|7524983 NADH dehydrogenase subunit 1 [Dictyostelium discoideu... 84 2e-15
sp|Q01148|NU1M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 84 2e-15
pir||A69151 NADH dehydrogenase (ubiquinone), subunit 1 related p... 83 3e-15
gi|5834982 NADH dehydrogenase subunit 1 [Xenopus laevis] >gi|128... 83 4e-15
pir||S34389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 83 4e-15
gi|5835067 NADH dehydrogenase subunit 1 [Petromyzon marinus] >gi... 83 4e-15
gi|11466642 NADH dehydrogenase subunit 1 [Malawimonas jakobiform... 83 4e-15
gi|11466583 NADH dehydrogenase subunit 1 [Rhodomonas salina] >gi... 83 4e-15
gi|11466477 NADH dehydrogenase subunit 1 [Chrysodidymus synuroid... 83 5e-15
emb|CAB52765.1| (AJ243655) transmembrane protein 31.3 kDa (conse... 82 9e-15
gi|11466331 NADH dehydrogenase subunit 1 [Cafeteria roenbergensi... 82 9e-15
gi|6137789 NADH dehydrogensae subunit 1 [Metridium senile] >gi|3... 82 1e-14
emb|CAA75485.1| (Y15186) NADH dehydrogenase subunit 1 [Myxine gl... 82 1e-14
gi|5835555 NADH dehydrogenase subunit 1 [Ovis aries] >gi|6093557... 82 1e-14
gb|AAF97804.1|AF281148_8 (AF281148) NADH dehydrogenase I subunit... 82 1e-14
gi|5834858 NADH dehydrogenase subunit 1 [Phoca vitulina] >gi|128... 81 2e-14
gi|5834898 NADH dehydrogenase subunit 1 [Strongylocentrotus purp... 81 2e-14
gi|5835010 NADH dehydrogenase subunit 1 [Halichoerus grypus] >gi... 80 3e-14
gi|5835835 NADH dehydrogenase subunit 1 [Pongo pygmaeus abelii] ... 80 3e-14
gi|5835693 NADH dehydrogenase subunit 1 [Ixodes hexagonus] >gi|7... 80 3e-14
sp|P42032|NUOH_RHOCA NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO... 80 3e-14
gi|5835086 NADH dehydrogenase subunit 1 [Asterina pectinifera] >... 80 3e-14
sp|P23650|NU1M_ASTPE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 80 3e-14
sp|O21077|NU1M_MYXGL NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 80 3e-14
pir||T34617 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 80 3e-14
gb|AAF66632.1| (AF143002) NADH dehydrogenase subunit 1 [Hipposid... 80 3e-14
gi|5835108 NADH dehydrogenase subunit 1 [Equus caballus] >gi|135... 80 4e-14
gi|5835346 NADH dehydrogenase subunit 1 [Equus asinus] >gi|31224... 80 4e-14
gi|11466505 NADH dehydrogenase, subunit 1 [Reclinomonas american... 80 4e-14
gi|6691423 NADH dehydrogenase subunit 1 [Lampetra fluviatilis] >... 80 4e-14
gi|5835639 NADH dehydrogenase subunit 1 [Papio hamadryas] >gi|66... 80 4e-14
gi|5835332 NADH dehydrogenase subunit 1 [Rhinoceros unicornis] >... 79 6e-14
gi|5834940 NADH dehydrogenase subunit 1 [Bos taurus] >gi|128632|... 79 8e-14
gi|5835318 NADH dehydrogenase subunit 1 [Polypterus ornatipinnis... 79 8e-14
gi|9801571 NADH dehydrogenase subunit 1 [Lama pacos] >gi|9558344... 79 8e-14
gi|5835477 NADH dehydrogenase subunit 1 [Balanoglossus carnosus]... 78 1e-13
gi|5836073 NADH dehydrogenase subunit 1 [Raja radiata] >gi|74319... 78 1e-13
gi|5835889 NADH dehydrogenase subunit 1 [Ceratitis capitata] >gi... 78 1e-13
gi|11386119 NADH dehydrogenase subunit 1 [Pteropus dasymallus] >... 78 1e-13
gi|5835402 NADH dehydrogenase subunit 1 [Ceratotherium simum] >g... 78 1e-13
pir||D72620 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 78 2e-13
gb|AAF61231.1|AF234899_1 (AF234899) NADH dehydrogenase I [Haemul... 78 2e-13
gi|5835304 NADH dehydrogenase subunit 1 [Arbacia lixula] >gi|743... 77 2e-13
sp|O78694|NU1M_SAGOE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 77 2e-13
gi|5835155 NADH dehydrogenase subunit 1 [Gorilla gorilla] >gi|60... 77 2e-13
gb|AAG28190.1|AF304201_1 (AF304201) NADH1 [Sus scrofa] 77 2e-13
sp|P92718|NU1M_PONPP NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 77 3e-13
gi|5835360 NADH dehydrogenase subunit 1 [Macropus robustus] >gi|... 77 3e-13
sp|O78710|NU1M_PERGU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 77 3e-13
gi|5836031 NADH dehydrogenase subunit 1 [Hippopotamus amphibius]... 76 4e-13
gi|11465884 NADH dehydrogenase subunit 1 [Ochromonas danica] >gi... 76 4e-13
sp|O78705|NU1M_MACRU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 76 5e-13
gi|5835127 NADH dehydrogenase subunit 1 [Pan troglodytes] >gi|60... 76 5e-13
gb|AAF66626.1| (AF142996) NADH dehydrogenase subunit 1 [Pteronot... 76 5e-13
gi|5834968 NADH dehydrogenase subunit 1 [Paracentrotus lividus] ... 76 7e-13
pir||S34388 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 76 7e-13
sp|O78708|NU1M_VOMUR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 76 7e-13
gi|10803739 NADH dehydrogenase subunit 1 [Gonostoma gracile] >gi... 76 7e-13
gb|AAF66628.1| (AF142998) NADH dehydrogenase subunit 1 [Pteronot... 76 7e-13
emb|CAA66299.1| (X97713) NADH1 [Pongo pygmaeus pygmaeus] 75 9e-13
sp|O78701|NU1M_BRAVA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 75 1e-12
gi|5835653 NADH dehydrogenase subunit 1 [Canis familiaris] >gi|7... 75 1e-12
gi|5835206 NADH dehydrogenase subunit 1 [Felis catus] >gi|135253... 75 2e-12
gi|11465930 NADH dehydrogenase subunit 1 [Pedinomonas minor] >gi... 75 2e-12
gb|AAF61229.1|AF234897_1 (AF234897) NADH dehydrogenase I [Haemul... 75 2e-12
gi|5835251 NADH dehydrogenase subunit 1 [Locusta migratoria] >gi... 74 2e-12
sp|P92604|NU1M_CANFA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 74 2e-12
pir||T14245 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 74 2e-12
gi|11602892 NADH dehydrogenase subunit 1 [Pteropus scapulatus] >... 74 2e-12
pir||C69032 NADH dehydrogenase (ubiquinone), subunit 1 related p... 74 3e-12
gi|5835459 NADH dehydrogenase subunit 1 [Florometra serratissima... 74 3e-12
gi|5835667 NADH dehydrogenase subunit 1 [Artibeus jamaicensis] >... 74 3e-12
gb|AAF66625.1| (AF142995) NADH dehydrogenase subunit 1 [Artibeus... 74 3e-12
emb|CAA10597.1| (AJ132137) NADH dehydrogenase subunit 1 [Littori... 73 3e-12
gb|AAF61228.1|AF234896_1 (AF234896) NADH dehydrogenase I [Haemul... 73 3e-12
gb|AAF66629.1| (AF142999) NADH dehydrogenase subunit 1 [Pteronot... 73 3e-12
gi|5835220 NADH dehydrogenase subunit 1 [Protopterus dolloi] >gi... 73 4e-12
sp|O78704|NU1M_MACEU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 73 6e-12
sp|O78712|NU1M_SMIMA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 73 6e-12
gb|AAF66624.1| (AF142994) NADH dehydrogenase subunit 1 [Noctilio... 73 6e-12
gb|AAF66630.1| (AF143000) NADH dehydrogenase subunit 1 [Mormoops... 73 6e-12
gi|5835140 NADH dehydrogenase subunit 1 [Pan paniscus] >gi|60451... 72 8e-12
gb|AAF61225.1|AF234893_1 (AF234893) NADH dehydrogenase I [Haemul... 72 8e-12
gi|9653260 NADH dehydrogenase subunit 1 [Physeter catodon] >gi|9... 72 8e-12
gb|AAC28344.1| (AF065103) NADH dehydrogenase subunit 1 [Nyctalus... 72 1e-11
sp|O80003|NUM1_NYCNO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 72 1e-11
sp|O78707|NU1M_TRIVU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 72 1e-11
gi|7374120 NADH dehydrogenase subunit 1 [Penaeus monodon] >gi|72... 72 1e-11
gb|AAF66627.1| (AF142997) NADH dehydrogenase subunit 1 [Pteronot... 72 1e-11
emb|CAC08255.1| (AL392146) NADH dehydrogenase subunit [Streptomy... 72 1e-11
gb|AAK40660.1| NADH dehydrogenase subunit H (NuoH) [Sulfolobus ... 71 1e-11
emb|CAA70708.1| (Y09524) NADH dehydrogenase subunit 1 [Branchios... 71 1e-11
gi|5835807 NADH dehydrogenase subunit 1 [Gadus morhua] >gi|24992... 71 1e-11
emb|CAA27295.1| (X03660) NADH hydrogenase subunit I (aa 1-359) [... 71 1e-11
gi|5835514 NADH dehydrogenase subunit 1 [Branchiostoma lanceolat... 71 1e-11
sp|O78702|NU1M_MANTE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 71 1e-11
gb|AAF78602.1|AF260826_1 (AF260826) NADH subunit 1 [Cochliomyia ... 71 1e-11
emb|CAA23994.1| (V00650) URF 1 [Emericella nidulans] 71 2e-11
gi|5835374 NADH dehydrogenase subunit 1 [Latimeria chalumnae] >g... 71 2e-11
gi|5835541 NADH dehydrogenase subunit 1 [Alligator mississippien... 71 2e-11
gb|AAF61226.1|AF234894_1 (AF234894) NADH dehydrogenase I [Haemul... 71 2e-11
gb|AAF81391.1|AF164590_2 (AF164590) NADH dehydrogenase subunit 1... 71 2e-11
gi|5835597 NADH dehydrogenase subunit 1 [Scyliorhinus canicula] ... 70 3e-11
gi|5835861 NADH dehydrogenase subunit 1 [Daphnia pulex] >gi|7431... 70 3e-11
gi|8844984 NADH dehydrogenase subunit 1 [Typhlonectes natans] >g... 70 3e-11
gi|5835709 NADH dehydrogenase subunit 1 [Squalus acanthias] >gi|... 70 4e-11
pir||B81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 70 4e-11
gi|5835975 NADH dehydrogenase subunit 1 [Vidua chalybeata] >gi|7... 69 5e-11
gi|5836045 NADH dehydrogenase subunit 1 [Mustelus manazo] >gi|74... 69 7e-11
gi|5835765 NADH dehydrogenase subunit 1 [Orycteropus afer] >gi|7... 69 7e-11
gb|AAA65487.1| (M57527) NDI [Rana catesbeiana] 69 9e-11
sp|P16672|NU1M_RANCA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 69 9e-11
gb|AAF81367.1|AF164578_2 (AF164578) NADH dehydrogenase subunit 1... 69 9e-11
gb|AAF81369.1|AF164579_2 (AF164579) NADH dehydrogenase subunit 1... 69 9e-11
>pir||H75113 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PAB0492
[similarity] - Pyrococcus abyssi (strain Orsay)
>gi|5458136|emb|CAB49625.1| (AJ248285) NADH
dehydrogenase I, subunit H [Pyrococcus abyssi]
Length = 309
Score = 603 bits (1538), Expect = e-172
Identities = 309/309 (100%), Positives = 309/309 (100%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTH 60
MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTH
Sbjct: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTH 60
Query: 61 GVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNP 120
GVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNP
Sbjct: 61 GVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNP 120
Query: 121 YAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAI 180
YAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAI
Sbjct: 121 YAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAI 180
Query: 181 AYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFL 240
AYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFL
Sbjct: 181 AYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFL 240
Query: 241 GGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPTIIA 300
GGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPTIIA
Sbjct: 241 GGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPTIIA 300
Query: 301 ALGAILASL 309
ALGAILASL
Sbjct: 301 ALGAILASL 309
>pir||E71019 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PH1450
[similarity] - Pyrococcus horikoshii
>gi|3257874|dbj|BAA30557.1| (AP000006) 309aa long
hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 309
Score = 566 bits (1443), Expect = e-160
Identities = 279/309 (90%), Positives = 298/309 (96%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTH 60
MLRV+++A+LIL+YATFVGFMFMGIIRK AR+HRRIGPPIYQPIIDTIKLF KKEN+TH
Sbjct: 1 MLRVVIDALLILIYATFVGFMFMGIIRKTVARIHRRIGPPIYQPIIDTIKLFAKKENITH 60
Query: 61 GVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNP 120
GVI+DFG+VFALGATILALMFIPLG++SVLRAYGDLILITFLLEIPMLGIMFAAMSSGNP
Sbjct: 61 GVIYDFGVVFALGATILALMFIPLGNVSVLRAYGDLILITFLLEIPMLGIMFAAMSSGNP 120
Query: 121 YAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAI 180
YAGIGAQRALLTLLA+QVPLGFAIV L EYYGTFSTYEIVMAQQ+HGWSIFHLPLLLAAI
Sbjct: 121 YAGIGAQRALLTLLAVQVPLGFAIVTLGEYYGTFSTYEIVMAQQLHGWSIFHLPLLLAAI 180
Query: 181 AYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFL 240
AYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGK+LGILQVQHAIGLFAETLFFSNIFL
Sbjct: 181 AYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKHLGILQVQHAIGLFAETLFFSNIFL 240
Query: 241 GGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPTIIA 300
GGA +T FSS ILNTLAT+ +LLIKQL VLF+AI ISTIFPRFTIDQAA+FYWKWPTIIA
Sbjct: 241 GGAAVTAFSSSILNTLATITILLIKQLVVLFIAIFISTIFPRFTIDQAAEFYWKWPTIIA 300
Query: 301 ALGAILASL 309
ALGAILASL
Sbjct: 301 ALGAILASL 309
>pir||C72281 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 TM1213
[similarity] - Thermotoga maritima (strain MSB8)
>gi|4981766|gb|AAD36288.1|AE001778_9 (AE001778) NADH
dehydrogenase, putative [Thermotoga maritima]
Length = 293
Score = 215 bits (541), Expect = 7e-55
Identities = 123/307 (40%), Positives = 173/307 (56%), Gaps = 20/307 (6%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTHGVIF 64
++ A+ L+ A F+ GI RK+ ARV RRIGPP YQ ID K K ++G +F
Sbjct: 1 MIKALFNLVLAFFLVLSLEGIARKIVARVQRRIGPPWYQNFIDVFKALSKHP-FSNGWVF 59
Query: 65 DFGIVFALGATILALMFIPLGSI--SVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYA 122
DFG++ ALG ++ M +PLGS+ + + +IT+L + LG+ + SGNP+A
Sbjct: 60 DFGVLMALGGSVATAMLMPLGSLKWTPFPNTDNFFVITYLFTVGALGMAMGMVGSGNPWA 119
Query: 123 GIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAIAY 182
IG RAL +L ++P + ++ Y T S ++++ Q W++F +PL AI
Sbjct: 120 SIGISRALTQMLGYELPFLVVMASVIFNYKTASIHQLITFQG-EKWNLFSMPL--GAIVA 176
Query: 183 DIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGG 242
I L M GK+PFDI IAP EI+ GPMVE GKYLG+LQ+ H LF E F N+FLGG
Sbjct: 177 FISLIGMMGKKPFDIAIAPAEIASGPMVELSGKYLGLLQIMHDFSLFVEISLFVNVFLGG 236
Query: 243 AVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPTIIAAL 302
+LG L+K + V VA+LIS++ PRF I+Q KFYW P +A L
Sbjct: 237 --------------GSLGWFLVKFVTVWVVAVLISSVLPRFRIEQMLKFYWGVPLGLAFL 282
Query: 303 GAILASL 309
A+ L
Sbjct: 283 NALFVVL 289
>pir||T51315 probable CO-induced hydrogenase complex chain CooK [imported] -
Rhodospirillum rubrum >gi|1515467|gb|AAC45117.1|
(U65510) CooK [Rhodospirillum rubrum]
Length = 323
Score = 136 bits (338), Expect = 4e-31
Identities = 94/309 (30%), Positives = 149/309 (47%), Gaps = 21/309 (6%)
Query: 13 LYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTHG---VIFDFGIV 69
++A +G G R+V AR+ RR+G P+ QP D +KL K+ V V+F +
Sbjct: 22 IFAITLGLALKGFDRRVFARLQRRVGAPLLQPFYDVLKLMTKRTLVPENANLVVFLMVPL 81
Query: 70 FALGATILALMFIPL-GSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQR 128
L + +A IP+ G A+GDL+++ +LL +P + +M A +SG+P+ GIG R
Sbjct: 82 LGLASMGVAAAMIPIPGLYDPSPAFGDLLVLFYLLSVPAVMLMLAGSASGSPFGGIGFSR 141
Query: 129 ALLTLLAIQVPLGFAIVALAEYYGT-------FSTYEIVMAQQVHGWSIFHLPLLLAAIA 181
+ +LA + P+ IV++A G S EIV QQ HG +F + A +
Sbjct: 142 EMAIMLAYEGPILLVIVSVALKTGAALGQPICLSLSEIVRYQQAHGAYLFDPWMWPAVLT 201
Query: 182 YDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLG 241
Y + A G PFDI A E+ GP++E+ G LG+L++ A+ ++ +
Sbjct: 202 YIAFIPANLGISPFDIPEAESEVLEGPLIEYSGVALGLLKLTSAV---------KSVVVI 252
Query: 242 GAVITTFSSPILNTLATLGVLLIKQLAVLFVAI-LISTIFPRFTIDQAAKFYWKWPTIIA 300
G I F L L V +K L + + ++ R IDQA FY KWP ++
Sbjct: 253 GLGIVLFFPNGPEGLFGLVVFALKCLVITVCGVSVLRAAVGRMRIDQAVIFYLKWPELLG 312
Query: 301 ALGAILASL 309
L ++
Sbjct: 313 IASLALVAM 321
>gb|AAF65735.1|AF228525_5 (AF228525) F420H2 dehydrogenase subunit FpoH [Methanosarcina mazei]
Length = 347
Score = 124 bits (309), Expect = 1e-27
Identities = 95/307 (30%), Positives = 152/307 (48%), Gaps = 25/307 (8%)
Query: 10 LILLYATFVGFMF-MGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHG- 61
L+L+ A F+G M + I RK++A + R GP + Q + D IKLF KE+V G
Sbjct: 22 LVLVGAIFLGGMAAVWIERKLSADIQLRYGPSRVGKFGLLQLVADAIKLF-TKEDVRPGN 80
Query: 62 ---VIFDFGIVFALGATILALMFIPLGSI---------SVLRAYGDLILITFLLEIPMLG 109
++D VF L + L L+ IP+G++ +V ++ I + I + G
Sbjct: 81 ADRFLYDNAPVFMLTSLFLMLVAIPVGAVFIDGNLYPLAVTEMDISILFIEAVSAINIFG 140
Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
I AA S N Y+ +GA R ++ +VPLG AIV++A G+ + +I AQ W+
Sbjct: 141 IFMAAYGSNNKYSLLGAFRNFARMIGYEVPLGIAIVSVAVMTGSLNIIDITSAQGSFVWN 200
Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
IF P + + + I L A G+ PFD + E+ G + E+ G G++ + +
Sbjct: 201 IFLQP--IGFVVFFIALMADLGRLPFDQNESEEELVAGWVTEYTGMRFGLVFFAEYMHMI 258
Query: 230 AETLFFSNIFLGGAVITTF--SSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
+ + +FLGG + F ++ +L +A G+LL+K + VL I + PRF IDQ
Sbjct: 259 LGSFLVALLFLGGWNVPAFVANNAVLGLIAPTGILLLKTVLVLMTIIGMRWAVPRFRIDQ 318
Query: 288 AAKFYWK 294
WK
Sbjct: 319 VVDMSWK 325
>pir||A75115 probable NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1
PAB1893 [similarity] - Pyrococcus abyssi (strain Orsay)
>gi|5458145|emb|CAB49634.1| (AJ248285) CO-induced
hydrogenase related, subunit K [Pyrococcus abyssi]
Length = 321
Score = 118 bits (294), Expect = 6e-26
Identities = 94/323 (29%), Positives = 154/323 (47%), Gaps = 22/323 (6%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENV-- 58
++ ++ IL+ Y + + +F GI RK+ AR+ RRIGPPI QP D +KL K+ +
Sbjct: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPN 62
Query: 59 THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
T +F V L I L + P+G + GD+I+ +LL + ++ MSSG
Sbjct: 63 TANFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMSSG 122
Query: 119 NPYAGIGAQRALLTLLAIQ--VPLG-FAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
+PY IGA R + L++ + + LG FA++ G + + + + W + + +
Sbjct: 123 SPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPM-V 181
Query: 176 LLAAIAYDIVLQAMFGKEP----FDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF-A 230
+A + V + E F+I A EI+ G +VE+ G+YLGI+++ +I F A
Sbjct: 182 WVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIA 241
Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIF----PRFTID 286
+L + +F I I+N LLI V V ++ TIF R I
Sbjct: 242 ASLVVAVLFPWQVGIPGIQGYIVN-------LLIHTAKVFIVLLVAKTIFRTVTGRLKIT 294
Query: 287 QAAKFYWKWPTIIAALGAILASL 309
QA W + +GA+L +L
Sbjct: 295 QAVNLLWTRVFAASIVGALLLAL 317
>pir||B71018 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PH1439
[similarity] - Pyrococcus horikoshii
>gi|3257863|dbj|BAA30546.1| (AP000006) 321aa long
hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 321
Score = 117 bits (291), Expect = 1e-25
Identities = 93/316 (29%), Positives = 152/316 (47%), Gaps = 16/316 (5%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENV--THGV 62
++ IL+ +Y + +F GI RK+ AR+ RRIGPPI QP D +KL K+ + T
Sbjct: 7 LIGLILLYIYVSITSLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPNTANF 66
Query: 63 IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYA 122
+F + L I L + PLG + GD+I+ +LL + ++ +SSG+PY
Sbjct: 67 MFRAAPILMLATVIALLAYTPLGFPPLFATKGDIIVFIYLLTLADFFLILGVISSGSPYG 126
Query: 123 GIGAQRALLTLLAIQ--VPLG-FAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
IGA R + L++ + + LG F+++ G + + + + W + + + +A
Sbjct: 127 KIGAAREVAMLISREPAMMLGVFSVMWGISKLGVKRPFSLGSLYEHNIWELGPM-VWVAG 185
Query: 180 IAYDIVLQAMFGKEP----FDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF-AETLF 234
I V A E F+I A EI+ G +VE+ G+YLGI+++ +I F A +L
Sbjct: 186 IILIYVFMAWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIATSLV 245
Query: 235 FSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVA-ILISTIFPRFTIDQAAKFYW 293
+ +F I I N L + +K VLF+A + T+ R I QA W
Sbjct: 246 VAVLFPWQVRIPGIEGYITN----LMIHTLKVFIVLFIAKTVFRTVTGRLRITQAVNLLW 301
Query: 294 KWPTIIAALGAILASL 309
+ +GA+L L
Sbjct: 302 TRVFAASVVGALLLVL 317
>gi|11466757 ndh1 [Marchantia polymorpha] >gi|128619|sp|P06255|NU1C_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
>gi|66138|pir||DELVN1 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - liverwort (Marchantia polymorpha)
chloroplast >gi|456521|emb|CAA28139.1| (X04465) ndh1
[Marchantia polymorpha]
Length = 368
Score = 108 bits (266), Expect = 1e-22
Identities = 88/333 (26%), Positives = 157/333 (46%), Gaps = 35/333 (10%)
Query: 5 IVNAILILLYATFVGFMFM-GIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKEN 57
I+ +ILIL+ +G + + + RK++A + +RIGP I Q + D IKLF K++
Sbjct: 30 IIFSILILMLGVTIGVLVLVWLERKISAAIQQRIGPEYAGPLGIIQALADGIKLFLKEDI 89
Query: 58 V-THGVI--FDFGIVFALGATILALMFIPLGSISVLRAY--GDLILITFLLEIPMLGIMF 112
V G + F+ G + L L+ + IP +L + G I +P LG++
Sbjct: 90 VPAQGDVWLFNIGPILVLIPVFLSYLVIPFEYNVILANFSIGVFFWIAVSSVVP-LGLLM 148
Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG---WS 169
A S N Y+ +G RA ++ ++PL +++++A + ST +IV AQ +G W+
Sbjct: 149 AGYGSNNKYSFLGGLRAAAQSISYEIPLALSVLSIALLSNSLSTVDIVEAQSKYGFLSWN 208
Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
++ P + I + I A + PFD+ A E+ G E+ G + + L
Sbjct: 209 LWRQP--IGFIVFFIASLAECERLPFDLPEAEEELVAGYQTEYSGMKFAFFYLASYLNLL 266
Query: 230 AETLFFSNIFLGG----------------AVITTFSSPILNTLATLGVLLIKQLAVLFVA 273
+LF + ++LGG +++ S +++ + + + L+K LF++
Sbjct: 267 VSSLFVTILYLGGWHFSIPFFSLFKNFEWNLMSNGISEVISIIIGIVITLVKSYLFLFIS 326
Query: 274 ILISTIFPRFTIDQAAKFYWKWPTIIAALGAIL 306
I+ PR IDQ WK+ + ALG +L
Sbjct: 327 IMTRWTLPRIRIDQLLNLGWKF-LLPIALGNLL 358
>emb|CAB44668.1| (AJ242867) NDH-A protein [Anabaena PCC7120]
Length = 372
Score = 106 bits (263), Expect = 3e-22
Identities = 84/315 (26%), Positives = 147/315 (46%), Gaps = 30/315 (9%)
Query: 9 ILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHGV 62
IL+L+ AT + + + RK++A +RIGP + P+ D +KL K++ V
Sbjct: 35 ILMLIGATVGVLVCVWLERKISAAAQQRIGPEYIGPLGLLAPVADGLKLVFKEDIVPAQA 94
Query: 63 ---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAMSSG 118
+F G + + L+ + +P G V+ G I + L I +G++ A SS
Sbjct: 95 DPWLFTLGPILVVLPVFLSYLIVPFGQNIVITNVGTGIFLWIALSSIQPIGLLMAGYSSN 154
Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ---VHGWSIFHLPL 175
N Y+ +G RA ++ ++PL +++A+ + ST +IV Q + GW+I+ P
Sbjct: 155 NKYSLLGGLRAAAQSISYEIPLALSVLAIVMMSNSLSTVDIVNQQSGYGILGWNIWRQP- 213
Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
L + + I A + PFD+ A E+ G E+ G + + + L L
Sbjct: 214 -LGFMIFWIAALAECERLPFDLPEAEEELVAGYQTEYSGMKFALFYLSSYVNLILSALLV 272
Query: 236 SNIFLGG------------AVITTFSSPILNTL-ATLGV--LLIKQLAVLFVAILISTIF 280
+ ++LGG V + ++P+L + A LG+ L+K ++F+AIL+
Sbjct: 273 AVLYLGGWDFPIPINVLANLVGVSEANPVLQVVSAALGITMTLVKAYFLVFIAILLRWTV 332
Query: 281 PRFTIDQAAKFYWKW 295
PR IDQ WK+
Sbjct: 333 PRVRIDQLLDLGWKF 347
>sp|P26522|NU1C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 >gi|319842|pir||QXYB1
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Synechocystis sp. (strain PCC 6803)
>gi|47555|emb|CAA44374.1| (X62517) NDHA [Synechocystis
sp.] >gi|1001395|dbj|BAA10885.1| (D64006) NADH
dehydrogenase subunit 1 [Synechocystis sp.]
Length = 372
Score = 106 bits (262), Expect = 4e-22
Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 36/332 (10%)
Query: 8 AILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHG 61
+IL+++ AT + + + RK++A +RIGP + QP+ D IKL K++ V
Sbjct: 34 SILMIIGATVGVLVVVWLERKISAAAQQRIGPEYAGPLGVLQPVADGIKLVFKEDVVPAK 93
Query: 62 V---IFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSS 117
+F G V + L+ + +P G V+ + L L I +G++ + +S
Sbjct: 94 ADPWLFTLGPVLVVLPVFLSYLIVPFGQNLVITDINVGIFLWIALSSIAPIGLLMSGYAS 153
Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ---VHGWSIFHLP 174
N Y+ +G RA ++ ++PL A++A+ + ST +IV Q + GW+I+ P
Sbjct: 154 NNKYSLLGGLRAAAQSISYEIPLSLAVLAIVMMSNSLSTIDIVDQQSGYGILGWNIWRQP 213
Query: 175 LLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLF 234
+ + + I A + PFD+ A E+ G E+ G + + + L L
Sbjct: 214 --VGFLIFWIAALAECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLGSYVNLVLSALV 271
Query: 235 FSNIFLGGAVITTFSSPILNTLATLGV------------------LLIKQLAVLFVAILI 276
FS ++LGG F P+ N LGV ++K ++F+AIL+
Sbjct: 272 FSVLYLGG---WDFPIPLENVANWLGVAPTTSWLQVLMAALGITMTVLKSYFLIFIAILL 328
Query: 277 STIFPRFTIDQAAKFYWKWPTIIAALGAILAS 308
PR IDQ WK+ +A ++ +
Sbjct: 329 RWTVPRVRIDQLLNLGWKFLLPVALANLLITA 360
>pir||E70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoH1 -
Aquifex aeolicus >gi|2983738|gb|AAC07299.1| (AE000734)
NADH dehydrogenase I chain H [Aquifex aeolicus]
Length = 336
Score = 105 bits (260), Expect = 6e-22
Identities = 92/323 (28%), Positives = 146/323 (44%), Gaps = 29/323 (8%)
Query: 9 ILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHGV 62
+++ A +G RK+ + R+GP I QP+ D +KL K+ + G
Sbjct: 16 VIVFSLALGIGAYLTWFERKLAGHIQNRLGPTVVGKFGILQPLADALKLATKEVIIPRGA 75
Query: 63 ---IFDFGIVFALGATILALMFIPLG-SISVLRAYGDLIL----ITFLL-----EIPMLG 109
++ +V AL +IL L IP G V Y + I+ I LL + + G
Sbjct: 76 DKPVYYAAVVMALVPSILLLTIIPFGPGFRVGNTYIEPIIADVNIALLLAFAFGSLSVYG 135
Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG-W 168
+F+ +S + YA IG+ R ++A +V LGF+++ + GT ST IV AQ G W
Sbjct: 136 TIFSGWASNSKYAFIGSLRKAAVVIAYEVVLGFSVLGVILLAGTLSTVGIVEAQIQKGVW 195
Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQV-QHAIG 227
IF+ P +A I Y + A G+ PFDI A E+ G VE+GG G + + +
Sbjct: 196 FIFYQP--VAFILYLFCMLAESGRVPFDIQEAEAELVTGYNVEYGGMKFGAFPLAEWYVN 253
Query: 228 LFAETLFFSNIFLGGAVITTFSSP-ILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
+ A + +F GG + P I L+ + K A++F + + PRF
Sbjct: 254 VIALSAIAVVLFFGG-----WDGPHIFGPLSPYFWFVFKTFALVFFTLWLHWTLPRFQAK 308
Query: 287 QAAKFYWKWPTIIAALGAILASL 309
+ WK IA L I+ ++
Sbjct: 309 DITEIAWKILLPIAILNVIITAV 331
>gi|11466443 subunit 1 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
>gi|7259586|gb|AAF43887.1|AF166114_99 (AF166114) subunit
1 of NADH-plastoquinoneoxidoreductase [Mesostigma
viride]
Length = 367
Score = 105 bits (260), Expect = 6e-22
Identities = 84/317 (26%), Positives = 144/317 (44%), Gaps = 33/317 (10%)
Query: 9 ILILLYATFVGFMFM-GIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHG 61
IL+L+ VG + + + RK++A V +RIGP + QP+ D +KL K++ +
Sbjct: 34 ILLLIILAVVGVLVVVWLERKISAAVQQRIGPEYAGPLGVLQPLADGLKLAFKEDIIPSK 93
Query: 62 ---VIFDFGIVFALGATILALMFIPLGSISVLRAY--GDLILITFLLEIPMLGIMFAAMS 116
++F G + L+ + +P G ++ G IT P LG++ +
Sbjct: 94 GDVLLFTLGPAIVVIPIFLSYLIVPFGENLIVSNINLGIFFWITVSSVAP-LGLLMSGYG 152
Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GWSIFHL 173
S N Y+ +G RA L+ ++PL ++++ + ST +IV Q + GW+I+
Sbjct: 153 SNNKYSFLGGLRATAQSLSYEIPLALCVLSICLLSDSLSTIDIVQKQSTYGILGWNIWRQ 212
Query: 174 PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETL 233
P + IA+ I A + PFD+ A E+ G E+ G G+ + + L L
Sbjct: 213 P--IGFIAFIIAALAECERLPFDLPEAEEELVAGYQTEYTGMKFGLFYIGSYVNLLVSAL 270
Query: 234 FFSNIFLGGAVITTFSSPILNTLAT---------------LGVLLIKQLAVLFVAILIST 278
F S ++LGG + +LN ++ +G+ L+K LF++IL
Sbjct: 271 FASVLYLGGWSLPIPIEFLLNKMSLNASDSEVQVISAFLGIGMTLLKTYLFLFLSILTRW 330
Query: 279 IFPRFTIDQAAKFYWKW 295
PR IDQ WK+
Sbjct: 331 TMPRVRIDQLLDLGWKF 347
>emb|CAA76118.1| (Y16191) echB [Methanosarcina barkeri]
Length = 285
Score = 104 bits (256), Expect = 2e-21
Identities = 80/295 (27%), Positives = 138/295 (46%), Gaps = 43/295 (14%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTHGVIF 64
I+ IL+L+ A +G + GI RK+TAR+ R+GPP+ QP D KL K+N+
Sbjct: 4 ILTIILVLIGAPIIGCLASGIDRKITARLQGRVGPPLLQPYYDVKKLL-SKDNMVVNPSQ 62
Query: 65 DFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYAGI 124
+F +V L IL+L + D ++I F+ + + ++ MS+G+PYA I
Sbjct: 63 NFYVVVYLAFIILSLFMLVFKQ--------DFLMIIFVYTVASVALVVGGMSTGSPYARI 114
Query: 125 GAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAIAYDI 184
G+ R ++ +L+ + L +A+ GTF ++ A + + PL+ IA +
Sbjct: 115 GSSREIMAILSYEPVLILYALAIYLLTGTFKLSALLDASSP---LLMYTPLIF--IAMIV 169
Query: 185 VLQAMFGKEPFDIMIA---PGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLG 241
VL K PFD + E+ G E+GG +++ H F+ +FL
Sbjct: 170 VLNIKLKKSPFDYSTSHHGHQELIKGMTTEYGGPGFATIEIAH---------FYEYVFLT 220
Query: 242 GAVITTF-SSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKW 295
G + + S+P++ L +G+ +A L+ + T A+ YW+W
Sbjct: 221 GLIFLFWASTPVIGVL--IGI----------IAYLLVIVIDNIT----ARVYWQW 259
>gi|11499419 F420H2:quinone oxidoreductase, 41.2 kDa subunit, putative
[Archaeoglobus fulgidus] >gi|7431961|pir||F69478 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 AF1831
[similarity] - Archaeoglobus fulgidus
>gi|2648714|gb|AAB89419.1| (AE000976) F420H2:quinone
oxidoreductase, 41.2 kDa subunit, putative
[Archaeoglobus fulgidus]
Length = 369
Score = 103 bits (255), Expect = 2e-21
Identities = 81/279 (29%), Positives = 136/279 (48%), Gaps = 18/279 (6%)
Query: 27 RKVTARVHRRIGP-----PI---YQPIIDTIKLFGKKENV---THGVIFDFGIVFALGAT 75
RK+TAR+ R+GP PI Q + D I+ F ++ V H F + A
Sbjct: 75 RKLTARIQWRVGPLEVARPIRGAIQALADGIRYFFQEAIVHREAHRPYFVQLPILAFIPV 134
Query: 76 ILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLL 134
+L +MFIP GS + + + +TF+ IP+ I+ +S + +A IG+ R
Sbjct: 135 LLPIMFIPAGSAVGIYTPNAIQLTVTFIALIPIT-IVAIGWASNSRFAYIGSVREAFMYF 193
Query: 135 AIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAIAYDIVLQAMFGKEP 194
A +VP A++++ YG+ Y V Q ++ + +A I Y I + + P
Sbjct: 194 AYEVPFIIAVISMIFLYGSGDAYVAVEKQSAIPGALLNP---IAFIVYLIAMLMATSRLP 250
Query: 195 FDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGGAVITTFSSPILN 254
F+I A EI+ GP VE+ G G++ V L+ TL F+ +FLGG + P+L
Sbjct: 251 FEIPEADQEIAFGPFVEYSGILFGLVMVLAYEKLYIMTLLFTILFLGG--WSGIYCPLLG 308
Query: 255 TLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
L + IK + V+ + +++ +I+ R+ +DQA + W
Sbjct: 309 DLNGPLWMFIKTIVVISILVIVRSIYARYRLDQALRIGW 347
>emb|CAA09812.1| (AJ011848) NADH dehydrogenase ND1 [Hordeum vulgare]
Length = 362
Score = 101 bits (250), Expect = 9e-21
Identities = 90/322 (27%), Positives = 149/322 (45%), Gaps = 39/322 (12%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENV 58
I+ + +LL T + + + R+++A + +RIGP + Q I D KL K++ +
Sbjct: 29 ILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDIL 88
Query: 59 -THGVI--FDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLL----EIPMLGIM 111
+ G I F G A+ + +L+ + IPLG VL DL + FL I +G++
Sbjct: 89 PSRGDISLFSIGPSIAVISVLLSFLVIPLGYHFVL---ADLSIGVFLWIAISSIAPIGLL 145
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GW 168
A SS N Y+ G RA ++ ++PL F ++A++ + ST +IV AQ + GW
Sbjct: 146 MAGYSSNNKYSFSGGLRAAAQSISYEIPLTFCVLAISLLSNSSSTVDIVEAQSKYGFFGW 205
Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
+I+ P + + + I A + PFD+ A E+ G E+ G G+ + + L
Sbjct: 206 NIWRQP--IGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNL 263
Query: 229 FAETLFFSNIFLGGAVITTFSSP---------------ILNTLATLGVLLIKQLAVLFVA 273
+LF + ++LGG FS P IL + + L K LF++
Sbjct: 264 LVSSLFVTVLYLGG---WNFSIPYISFFDFFQMNKAVGILEMTMGIFITLTKAYLFLFIS 320
Query: 274 ILISTIFPRFTIDQAAKFYWKW 295
I I PR +DQ WK+
Sbjct: 321 ITIRWTLPRMRMDQLLNLGWKF 342
>gi|11467260 NADH dehydrogenase ND1 [Zea mays] >gi|400636|sp|P25706|NU1C_MAIZE
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
>gi|320098|pir||JQ1671 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - maize chloroplast
>gi|12420|emb|CAA44228.1| (X62370) NADH Dehydrogenase
subunit A [Zea mays] >gi|902289|emb|CAA60353.1|
(X86563) NADH dehydrogenase ND1 [Zea mays]
Length = 362
Score = 100 bits (246), Expect = 3e-20
Identities = 89/322 (27%), Positives = 149/322 (45%), Gaps = 39/322 (12%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENV 58
I+ +LL T + + + R+++A + +RIGP + Q I D KL K++ +
Sbjct: 29 ILPIFALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDIL 88
Query: 59 -THGVI--FDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLL----EIPMLGIM 111
+ G I F G A+ + +L+ + IPLG VL DL + FL I +G++
Sbjct: 89 PSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVL---ADLSIGVFLWIAISSIAPIGLL 145
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GW 168
A SS N Y+ G RA ++ ++PL F ++A++ + ST +IV AQ + GW
Sbjct: 146 MAGYSSNNKYSFSGGLRAAAQSISYEIPLTFCVLAISLLSNSSSTVDIVEAQSKYGFFGW 205
Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
+++ P + + + I A + PFD+ A E+ G E+ G G+ + + L
Sbjct: 206 NLWRQP--IGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNL 263
Query: 229 FAETLFFSNIFLGGAVITTFSSP---------------ILNTLATLGVLLIKQLAVLFVA 273
+LF + ++LGG FS P IL + + + L K LF++
Sbjct: 264 LVSSLFVTVLYLGG---WNFSIPYISFFGFFQMNKIIGILEMVIGIFITLTKAYLFLFIS 320
Query: 274 ILISTIFPRFTIDQAAKFYWKW 295
I I PR +DQ WK+
Sbjct: 321 ITIRWTLPRMRMDQLLNLGWKF 342
>gi|11466852 NADH dehydrogenase ND1 [Oryza sativa]
>gi|128620|sp|P12124|NU1C_ORYSA NADH-PLASTOQUINONE
OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
>gi|66139|pir||DERZN1 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - rice chloroplast
>gi|669087|emb|CAA33910.1| (X15901) NADH dehydrogenase
ND1 [Oryza sativa] >gi|226676|prf||1603356DD NADH
dehydrogenase ND1 [Oryza sativa]
Length = 362
Score = 100 bits (246), Expect = 3e-20
Identities = 88/319 (27%), Positives = 150/319 (46%), Gaps = 33/319 (10%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENV 58
I+ + +LL T + + + R+++A + +RIGP + Q I D KL K++ +
Sbjct: 29 ILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDIL 88
Query: 59 -THGVI--FDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLL----EIPMLGIM 111
+ G I F G A+ + +L+ + IPLG VL DL + FL I +G++
Sbjct: 89 PSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVL---ADLSIGVFLWIAISSIAPIGLL 145
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GW 168
A SS N Y+ G RA ++ ++PL F ++A++ + ST +IV AQ + GW
Sbjct: 146 MAGYSSNNKYSFSGGLRAAAQSISYEIPLTFCVLAISLLSNSSSTVDIVEAQSKYGFFGW 205
Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
+++ P + + + I A + PFD+ A E+ G E+ G G+ + + L
Sbjct: 206 NLWRQP--IGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNL 263
Query: 229 FAETLFFSNIFLGG-----AVITTFS-------SPILNTLATLGVLLIKQLAVLFVAILI 276
+LF + ++LGG I+ F IL ++ + L K LF++I I
Sbjct: 264 LVSSLFVTVLYLGGWNLSIPYISFFGFFQMNKMVGILEMTMSIFITLTKAYLFLFISITI 323
Query: 277 STIFPRFTIDQAAKFYWKW 295
PR +DQ WK+
Sbjct: 324 RWTLPRMRMDQLLNLGWKF 342
>sp|Q00242|NU1C_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 HOMOLOG
>gi|541331|pir||JQ2135 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Plectonema boryanum
>gi|216818|dbj|BAA00814.1| (D01014) NADH-ubiquinone
oxidoreductase chain 1 homolog [Plectonema boryanum]
Length = 372
Score = 99.5 bits (244), Expect = 5e-20
Identities = 82/328 (25%), Positives = 155/328 (47%), Gaps = 30/328 (9%)
Query: 9 ILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENV---T 59
+++LL AT + + + RK++A +RIGP + P+ D +KL K++ V
Sbjct: 35 LIMLLAATVSVLVVVWLERKISAAAQQRIGPEFIGPLGVLAPLADGLKLVLKEDVVPAKA 94
Query: 60 HGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSG 118
++F G + L+ + +P G + G + L L + +G++ + +S
Sbjct: 95 DKLLFTLGPAIVVIPVFLSYLILPFGQNLQITDVGLGIFLWIALSSVVPIGLLMSGYASN 154
Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ---VHGWSIFHLPL 175
N Y+ +G RA ++ ++PL +++A+ + ST +IV Q + GW+I+ P
Sbjct: 155 NKYSLLGGLRAAAQSISYELPLALSVLAVVMMSNSLSTVDIVNQQAGYGILGWNIWRQP- 213
Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
+ I + I A + PFD+ A E+ G E+ G + + + L L F
Sbjct: 214 -VGFIIFWIAALAECERIPFDLPEAEEELVAGYQTEYSGMKFALFYLGSYVNLTLSALLF 272
Query: 236 SNIFLGG-------AVITTF-----SSPILNTL-ATLGV--LLIKQLAVLFVAILISTIF 280
+ ++LGG +VI+ S+P L + AT+G+ L+K ++F+AIL+
Sbjct: 273 AVLYLGGWEFPISLSVISGLIGVPESTPWLQLIFATIGIGMTLLKAYFLIFLAILMRWTV 332
Query: 281 PRFTIDQAAKFYWKWPTIIAALGAILAS 308
PR IDQ WK+ ++ + ++ +
Sbjct: 333 PRVRIDQLLDLGWKFLLPVSLVNLLITA 360
>gi|11467870 subunit 1 of NADH-plastoquinoneoxidoreductase [Nephroselmis
olivacea] >gi|5880799|gb|AAD54892.1|AF137379_115
(AF137379) subunit 1 of NADH-plastoquinoneoxidoreductase
[Nephroselmis olivacea]
Length = 362
Score = 97.1 bits (238), Expect = 2e-19
Identities = 88/331 (26%), Positives = 153/331 (45%), Gaps = 31/331 (9%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
+L V + + +++ AT + + + RK++A V +R+GP + QP+ D +KL K
Sbjct: 29 VLWVPLPILSLVIVATLGVLVIVWLERKISAGVQQRVGPEYGGALGLLQPLADGLKLVFK 88
Query: 55 KENV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITF----LLEIPM 107
++ V + +F G + LA + +P G ++ DL + F + I
Sbjct: 89 EDVVPAKSDTWLFTLGPAVVVIPIFLAYLVVPFGQQLII---ADLRIGIFFWIAISSIAP 145
Query: 108 LGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
+G++ + S N Y+ +G RA ++ ++PL ++++ + ST +IV +Q G
Sbjct: 146 IGLLMSGYGSNNKYSFLGGLRAAAQSISYELPLAICVLSVCLLADSLSTVDIVESQSSWG 205
Query: 168 ---WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQH 224
W+I+ P + +A+ I A + PFD+ A E+ G E+ G G+ V
Sbjct: 206 ILTWNIWRQP--IGFVAFLIAALAECERLPFDLPEAEEELVAGYQTEYTGMKFGLFYVGS 263
Query: 225 AIGLFAETLFFSNIFLGG-----AV--ITTFSSPILNTLATLGV--LLIKQLAVLFVAIL 275
+ L F + ++LGG A+ I S P A LG+ L+K LF AIL
Sbjct: 264 YVNLLVSGCFVTVLYLGGWHGPFAIDGILPDSPPFQVLDAFLGITWTLLKTFLFLFAAIL 323
Query: 276 ISTIFPRFTIDQAAKFYWKWPTIIAALGAIL 306
PR IDQ WK+ + +LG +L
Sbjct: 324 TRWTLPRVRIDQLLDLGWKF-LLPVSLGNLL 353
>pir||H64364 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) - Methanococcus
jannaschii >gi|1591222|gb|AAB98508.1| (U67501)
NADH-ubiquinone oxidoreductase, subunit 1 [Methanococcus
jannaschii]
Length = 295
Score = 96.7 bits (237), Expect = 3e-19
Identities = 85/291 (29%), Positives = 143/291 (48%), Gaps = 35/291 (12%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTHGVIF 64
++ AI + ++A VG + +G+ RK+ AR+ R GPPI Q ++ T+K + K+
Sbjct: 8 LIGAINLTIHAFLVGSLLLGLHRKIMARIQGRPGPPIIQYLLHTLKFYVKE--------- 58
Query: 65 DFGIVFALGATILALMFIPLGSISVLRA--------YGDLILITFLLEIPMLGIMFAAMS 116
I F + A +F+ L I++ A L++I + + + +S
Sbjct: 59 ---ITFPITAGNPLYIFVALLDIAIWLAALIIAIDFKSSLLIIIGIYVLQKIVEHGCGLS 115
Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTY--EIVMAQQVHGWSIFHLP 174
SG+PY IG R++ + A +VPL FA+VA A Y T S +I+ Q++HG +F +P
Sbjct: 116 SGSPYGKIGGVRSVFS-AAAEVPL-FAVVA-AIYLTTHSVLISDILSYQEIHGSLLFKMP 172
Query: 175 LLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLF 234
+ A A+ I+L + PF I + +I G M E G I+ + AI F
Sbjct: 173 --ICAFAFFILLVSKAPNSPFGI-VKGKDIVSGYMTEHYGLLGAIIYIAEAIAYFVLLWL 229
Query: 235 FSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTI 285
F +F+G VI +SP+L TL V+++ + + FV L + P ++
Sbjct: 230 FIAVFIGPLVI---NSPVL----TLAVMVVMTVILAFVNGLTPLLAPHHSV 273
>pir||F75060 probable hydrogenase (EC 1.18.99.1) chain 4 PAB1393 [similarity] -
Pyrococcus abyssi (strain Orsay)
>gi|5458892|emb|CAB50379.1| (AJ248287) HYDROGENASE-4
COMPONENT C (EC 1.-.-.-) [Pyrococcus abyssi]
Length = 299
Score = 96.3 bits (236), Expect = 4e-19
Identities = 87/293 (29%), Positives = 135/293 (45%), Gaps = 20/293 (6%)
Query: 4 VIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENV-THGV 62
+I IL L F+ GI RKV AR+ R GPP+ Q D +KL + T
Sbjct: 1 MIAFTILALGIVLFLPPYLDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIPTRNW 60
Query: 63 IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYA 122
+F A + I+A + +P G + L+ +LI+ + + + + +M A S N ++
Sbjct: 61 LFKLYPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFS 120
Query: 123 GIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHL-PLLLAAIA 181
+G+ R ++ +L ++ L LA G+ EI+ S HL P L+ +A
Sbjct: 121 HLGSAREMMLILTVEPLLAIVYGILAYNAGSLDIGEII--------SNLHLTPSLI--VA 170
Query: 182 YDIVLQAMF---GKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF-SN 237
Y I+ +M+ G PFD+ A E+ GP+ E+ G+ LGI I FA FF S
Sbjct: 171 YAILAYSMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSL 230
Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
+ L ITT + +L L + L+ LA+ V + R IDQ AK
Sbjct: 231 VVLPLVPITTQAKALLALL----LQLLLTLALYPVIASLEATNARLRIDQVAK 279
>pir||E81991 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain H NMA0009
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7378787|emb|CAB83329.1| (AL162752) NADH
dehydrogenase I chain H [Neisseria meningitidis Z2491]
Length = 358
Score = 96.3 bits (236), Expect = 4e-19
Identities = 82/314 (26%), Positives = 137/314 (43%), Gaps = 25/314 (7%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPI------YQPIIDTIKLFGK 54
++ VIV ++IL+ RKV + R+GP + QP D KL K
Sbjct: 25 VVSVIVKIVIILIPLILTVAYLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFK 84
Query: 55 ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGI 110
+ +++ +F G + +L + A IP VL L+ I + + + G+
Sbjct: 85 EVTRPRLSNKALFYIGPIMSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGV 144
Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ--VHGW 168
+ A +S + Y+ +GA RA ++ ++ + A+V + G+ + +IV AQ + G
Sbjct: 145 IIAGWASNSKYSFLGAMRASAQSISYEIAMSAALVCVVMVSGSMNFSDIVAAQAKGIAGG 204
Query: 169 SIFH---LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHA 225
S+F LPL I Y I A + PFD+ EI G VE+ G + +
Sbjct: 205 SVFSWNWLPLFPIFIVYLISAVAETNRAPFDVAEGESEIVAGHHVEYSGFAFALFFLAEY 264
Query: 226 IGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGV-----LLIKQLAVLFVAILISTIF 280
I + + S +FLGG + SP + +G + +K AVL+ + I F
Sbjct: 265 IFMILISALTSLMFLGG-----WLSPFPQSWGFIGTPSAFWMFVKMAAVLYWYLWIRATF 319
Query: 281 PRFTIDQAAKFYWK 294
PR+ DQ + WK
Sbjct: 320 PRYRYDQIMRLGWK 333
>gi|11497586 NADH dehydrogenase ND1 subunit [Spinacia oleracea]
>gi|7636167|emb|CAB88789.1| (AJ400848) NADH
dehydrogenase ND1 subunit [Spinacia oleracea]
Length = 365
Score = 96.3 bits (236), Expect = 4e-19
Identities = 85/317 (26%), Positives = 144/317 (44%), Gaps = 36/317 (11%)
Query: 9 ILILLYATFVGFM-FMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHG 61
ILIL+ +G + + + R+++A + +RIGP I Q + D KL K EN+
Sbjct: 35 ILILVLGITIGVLVIVWLEREISASIQQRIGPEYAGPLGILQALADGTKLLFK-ENLLPS 93
Query: 62 ----VIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLL----EIPMLGIMFA 113
+F G A+ + +L + IP GS VL DL + FL I +G++ +
Sbjct: 94 RGDTYLFSIGPSIAVISILLGYLIIPFGSRLVL---ADLSIGVFLWIAVSSIAPIGLLMS 150
Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GWSI 170
S N Y+ +G RA ++ ++PL +++++ + ST +IV AQ + GW++
Sbjct: 151 GYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSSSTVDIVEAQSKYGFWGWNL 210
Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
+ P + I + I A + PFD+ A E+ G E+ G G+ V + L
Sbjct: 211 WRQP--IGFIVFIISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLI 268
Query: 231 ETLFFSNIFLGG---AVITTFSSP---------ILNTLATLGVLLIKQLAVLFVAILIST 278
+LF + ++LGG ++ F S + T + + L K LF+ I
Sbjct: 269 SSLFVTVLYLGGWNLSIPYIFISEFFEINKIDGVFGTTIGIFITLAKTFLFLFIPITTRW 328
Query: 279 IFPRFTIDQAAKFYWKW 295
PR +DQ WK+
Sbjct: 329 TLPRLRMDQLLNLGWKF 345
>gi|11466175 NADH dehydrogenase subunit 1 [Naegleria gruberi]
>gi|10444210|gb|AAG17776.1|AF288092_1 (AF288092) NADH
dehydrogenase subunit 1 [Naegleria gruberi]
Length = 327
Score = 95.2 bits (233), Expect = 9e-19
Identities = 82/314 (26%), Positives = 139/314 (44%), Gaps = 21/314 (6%)
Query: 11 ILLYATFVGFMFMGII------RKVTARVHRRIGPPIY------QPIIDTIKLFGKK--- 55
I+ + F+ F+ + I RK A + RR GP + QPI D +K F K+
Sbjct: 9 IIFFLLFLVFLLLTIALTTLVERKAMASIQRRRGPNVVGFFGFLQPIADGLKAFIKEIVL 68
Query: 56 ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAA 114
+ ++ IF VF +IL + IP G VL + L+ + + + + GI+F+
Sbjct: 69 PSNSNLFIFLLAPVFTFFCSILLWVVIPFGENKVLIDFPFSLLYLLTISSLSVYGIIFSG 128
Query: 115 MSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLP 174
SS + YA +G R+ +++ +V +GF + + +F+ ++V+ Q+ + W F LP
Sbjct: 129 WSSNSKYAFLGGLRSAAQMISYEVCIGFVFIVMIMMTDSFNLIDVVINQE-YVW--FILP 185
Query: 175 LLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLF 234
L + + I A + PFD+ A E+ G VE+ + + + +
Sbjct: 186 LFPLWLIFFISALAETNRAPFDLPEAEAELVAGYNVEYSSIAFALFFLAEYGNIVLMSSL 245
Query: 235 FSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
S F GG + P+ N L +K +F+ + I FPR+ DQ K WK
Sbjct: 246 LSIFFWGGWL--AIPLPLFNLLPDFFTFALKVTLHVFIFVWIRAAFPRYRYDQLMKLGWK 303
Query: 295 WPTIIAALGAILAS 308
I+ L L S
Sbjct: 304 VLMPISVLFVYLIS 317
>pir||S37065 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain H - Escherichia
coli >gi|397905|emb|CAA48367.1| (X68301) NADH
dehydrogenase I, subunit nuoH [Escherichia coli]
Length = 325
Score = 94.8 bits (232), Expect = 1e-18
Identities = 80/304 (26%), Positives = 135/304 (44%), Gaps = 21/304 (6%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
+L I+ A++ILL G R++ R GP Q + D IK+F K
Sbjct: 11 ILLTILKAVVILLVVVTCGAFMSFAKRRLLGLFQNRYGPNRVAWGGSLQLVADMIKMFFK 70
Query: 55 KENV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGI 110
++ + + VIF + A + +LA +P+ V+ IL ++ + + +
Sbjct: 71 EDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYAV 130
Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
+FA SS N Y+ +GA RA L+ +V LG +++ + G+F+ +IV + Q H W++
Sbjct: 131 LFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQAGSFNMTDIVNS-QAHVWNV 189
Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
+P I + I A+ + PFD A E++ G +E+ G G+ V IG+
Sbjct: 190 --IPQFFGFITFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVT 247
Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
+ +F GG + P+L +K + + ILI PR DQ
Sbjct: 248 ISALMVTLFFGG-----WQGPLLPPFIWFA---LKTAFFMMMFILIRASLPRPRYDQVMS 299
Query: 291 FYWK 294
F WK
Sbjct: 300 FGWK 303
>gb|AAG23680.1|AF288091_25 (AF288091) NADH dehydrogenase subunit 1 [Thraustochytrium aureum]
Length = 321
Score = 94.8 bits (232), Expect = 1e-18
Identities = 82/307 (26%), Positives = 139/307 (44%), Gaps = 24/307 (7%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
M++ + I+L F RK+ + RR GP + Q + D +KLF K
Sbjct: 1 MIKFFLKTFSIILPLLIAIAFFTVAERKIIGSIQRRRGPNTVGLFGVTQALADGLKLFLK 60
Query: 55 KE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLIL-ITFLLEIPMLG- 109
+ + ++ ++F F + +++ P+ SV Y DL L I FLL I LG
Sbjct: 61 ESILPSSSNKLLFMFAPIITFFLSLIGWAIFPINENSV---YSDLNLGILFLLAISSLGV 117
Query: 110 --IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
I+ A SS + YA +GA R+ +++ ++ +GF ++++ G+ + IV+AQ+
Sbjct: 118 YGIIIAGWSSNSKYAFLGALRSAAQMVSYEISIGFILISVIISCGSLNLIRIVIAQE-KI 176
Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
W F +PL I + I A + PFD+ A E+ G VE+ G + +
Sbjct: 177 W--FFIPLFPMFILFFIACLAETNRHPFDLPEAEAELVSGYNVEYSGIGFALFFLGEYGN 234
Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
+ + F S +FLGG + P N ++ + IK + + I FPR+ DQ
Sbjct: 235 IILISAFCSLLFLGGWLF-----PYFNFISGSIIFSIKTFFFITLFIWARAAFPRYRYDQ 289
Query: 288 AAKFYWK 294
+ WK
Sbjct: 290 LMRLGWK 296
>emb|CAB67225.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit 1 [Oenothera
elata subsp. hookeri]
Length = 363
Score = 94.8 bits (232), Expect = 1e-18
Identities = 83/321 (25%), Positives = 145/321 (44%), Gaps = 35/321 (10%)
Query: 4 VIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKEN 57
++V + ++L T + + + R+++A + +RIGP I QP+ D IKL K EN
Sbjct: 29 MLVPILSLVLGITLGVLVIVWLEREISAGIQQRIGPEYAGPMGILQPLADGIKLIFK-EN 87
Query: 58 VTHGV----IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLL----EIPMLG 109
+ +F G A+ + +L+ IP S VL DL + FL I +G
Sbjct: 88 LLPSRGDTRLFSIGPSIAVISILLSYSVIPFSSHLVL---SDLNIGVFLWIAVSSIAPIG 144
Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH--- 166
++ + S N Y+ +G RA ++ ++PL +++++ + ST +IV AQ +
Sbjct: 145 LLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCLLSISLLSNSLSTVDIVEAQSKYGLW 204
Query: 167 GWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAI 226
GW+++ P + + + I A + PFD+ A E+ G E+ G G+ V +
Sbjct: 205 GWNLWRQP--IGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYL 262
Query: 227 GLFAETLFFSNIFLGGAVIT------------TFSSPILNTLATLGVLLIKQLAVLFVAI 274
L +LF + ++LGG I+ T + T + L K LF++I
Sbjct: 263 NLLVSSLFVTVLYLGGWNISISYIFVPGLFEITKVGRVFGTTIGIFTTLAKTYLFLFISI 322
Query: 275 LISTIFPRFTIDQAAKFYWKW 295
PR +DQ WK+
Sbjct: 323 TTRWTLPRLRMDQLLNLGWKF 343
>gb|AAF03197.1|AF110138_29 (AF110138) NADH dehydrogenase subunit 1 [Nephroselmis olivacea]
Length = 329
Score = 94.4 bits (231), Expect = 2e-18
Identities = 82/297 (27%), Positives = 135/297 (44%), Gaps = 15/297 (5%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKENVTHG 61
IL ++ VG ++ + RKV + RR GP + QP+ D +KL K+ +
Sbjct: 12 ILGIIVPLLVGVAYLTLAERKVMGSMQRRKGPNVVGIFGLLQPLADGLKLLIKEPVLPSN 71
Query: 62 ---VIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAMSS 117
+IF F V ++A IP G +L +L F + + + GI+ A SS
Sbjct: 72 ANIIIFLFAPVITFVLALVAWAVIPFGEGLLLADVNVGVLYLFAISSLGVYGIIMAGWSS 131
Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
+ YA +GA R+ +++ +V +G I+ + G+ + EIVMAQQ + I PL
Sbjct: 132 NSKYAFLGALRSAAQMVSYEVSIGLIIITVLMCAGSLNLSEIVMAQQTIWYCI---PLFP 188
Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
I + I A + PFD+ A E+ G VE+ + + + + S
Sbjct: 189 LMILFYISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMIMMSAVCSV 248
Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+FLGG + F+ I + + L +K + LF+ I + FPR+ DQ + WK
Sbjct: 249 LFLGG-WLPPFNLVIFSWIPGGVWLGLKVVFFLFIFIWVRAAFPRYRYDQLMRLGWK 304
>pir||E81219 NADH dehydrogenase I, H chain NMB0250 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225473|gb|AAF40704.1| (AE002382) NADH dehydrogenase
I, H subunit [Neisseria meningitidis MC58]
Length = 358
Score = 94.4 bits (231), Expect = 2e-18
Identities = 82/314 (26%), Positives = 135/314 (42%), Gaps = 25/314 (7%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPI------YQPIIDTIKLFGK 54
++ VIV ++IL+ RKV + R+GP + QP D KL K
Sbjct: 25 VVSVIVKIVIILIPLILTVAYLTYFERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLLFK 84
Query: 55 ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGI 110
+ +++ +F G + +L + A IP VL L+ I + + + G+
Sbjct: 85 EVTRPKLSNKALFYIGPIMSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVYGV 144
Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ--VHGW 168
+ A +S + Y+ +GA RA ++ ++ + A+V + G+ + +IV AQ + G
Sbjct: 145 IIAGWASNSKYSFLGAMRASAQSISYEIAMSAALVCVVMVSGSMNFSDIVAAQAKGIAGG 204
Query: 169 SIFH---LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHA 225
S+F LPL I Y I A + PFD+ EI G VE+ G + +
Sbjct: 205 SVFSWNWLPLFPIFIVYLISAVAETNRAPFDVAEGESEIVAGHHVEYSGFAFALFFLAEY 264
Query: 226 IGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGV-----LLIKQLAVLFVAILISTIF 280
I + S +FLGG + SP + +G + K AVL+ + I F
Sbjct: 265 IFMILIAALTSLMFLGG-----WLSPFPQSWGIVGTPSAFWMFAKMAAVLYWYLWIRATF 319
Query: 281 PRFTIDQAAKFYWK 294
PR+ DQ + WK
Sbjct: 320 PRYRYDQIMRLGWK 333
>sp|P33603|NUOH_ECOLI NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
8) (NUO8) >gi|7431904|pir||H64999 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain H - Escherichia coli
>gi|1788618|gb|AAC75342.1| (AE000317) NADH dehydrogenase
I chain H [Escherichia coli K12]
>gi|1799642|dbj|BAA16110.1| (D90859) NADH DEHYDROGENASE
I CHAIN H (EC 1.6.5.3) (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN 8) (NUO8). [Escherichia coli]
Length = 325
Score = 94.0 bits (230), Expect = 2e-18
Identities = 83/305 (27%), Positives = 138/305 (45%), Gaps = 23/305 (7%)
Query: 1 MLRVIVNAILILLYATFVG-FMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFG 53
+L I+ A++ILL G FM G R++ R GP Q + D IK+F
Sbjct: 11 ILLTILKAVVILLVVVTCGAFMSFGE-RRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFF 69
Query: 54 KKENV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLG 109
K++ + + VIF + A + +LA +P+ V+ IL ++ + +
Sbjct: 70 KEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVYA 129
Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
++FA SS N Y+ +GA RA L+ +V LG +++ + G+F+ +IV + Q H W+
Sbjct: 130 VLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQAGSFNMTDIVNS-QAHVWN 188
Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
+ +P I + I A+ + PFD A E++ G +E+ G G+ V IG+
Sbjct: 189 V--IPQFFGFITFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIV 246
Query: 230 AETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAA 289
+ +F GG + P+L +K + + ILI PR DQ
Sbjct: 247 TISALMVTLFFGG-----WQGPLLPPFIWFA---LKTAFFMMMFILIRASLPRPRYDQVM 298
Query: 290 KFYWK 294
F WK
Sbjct: 299 SFGWK 303
>pir||H83314 NADH dehydrogenase I chain H PA2643 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948712|gb|AAG06031.1|AE004693_2 (AE004693) NADH
dehydrogenase I chain H [Pseudomonas aeruginosa]
Length = 331
Score = 93.6 bits (229), Expect = 3e-18
Identities = 78/306 (25%), Positives = 133/306 (42%), Gaps = 19/306 (6%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPI------IDTIKLFGK 54
++ +V AI++LL G + + R++ R GP P D +K+F K
Sbjct: 11 IILTVVKAIVVLLAVVICGALLSWVERRLLGLWQDRYGPNRVGPFGAFQLGADMVKMFFK 70
Query: 55 KE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGI 110
++ +IF V A+GA ++A +P+ + IL F + + + +
Sbjct: 71 EDWTPPFADKMIFTLAPVIAMGALLVAFAIVPITPTWGVADLNIGILFFFAMAGLTVYAV 130
Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
+FA SS N +A +G+ RA ++ +V L +++ + G+F+ +IV Q + W
Sbjct: 131 LFAGWSSNNKFALLGSLRASAQTISYEVFLALSLMGIVAQVGSFNMRDIVQYQIDNVW-- 188
Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
F +P + I A+ + PFD A E++ G +E+ G G+ V IG+
Sbjct: 189 FIIPQFFGFCTFIIAGVAVTHRHPFDQPEAEQELADGYHIEYAGMKWGMFFVGEYIGIVL 248
Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVA--ILISTIFPRFTIDQA 288
+ + +F GG + P L+TL L F+ ILI PR DQ
Sbjct: 249 VSALLATLFFGG-----WHGPFLDTLPWLSFFYFAAKTGFFIMLFILIRASLPRPRYDQV 303
Query: 289 AKFYWK 294
F WK
Sbjct: 304 MAFSWK 309
>pir||B65024 probable hydrogenase (EC 1.18.99.1) chain 4 b2483 [similarity] -
Escherichia coli (strain K-12)
>gi|1788828|gb|AAC75536.1| (AE000335) hydrogenase 4
membrane subunit [Escherichia coli K12]
>gi|1799911|dbj|BAA16361.1| (D90876) FORMATE
HYDROGENLYASE SUBUNIT 4 (FHL SUBUNIT 4) (HYDROGENASE 4,
SUBUNIT 4). [Escherichia coli]
>gi|1805542|dbj|BAA16371.1| (D90877) FORMATE
HYDROGENLYASE SUBUNIT 4 (FHL SUBUNIT 4) (HYDROGENASE 4,
SUBUNIT 4). [Escherichia coli]
Length = 322
Score = 92.4 bits (226), Expect = 6e-18
Identities = 75/277 (27%), Positives = 138/277 (49%), Gaps = 16/277 (5%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKE--NVTHGV 62
+ A+++L+ +F GI R++ AR+H R GP I+Q D KLF ++E + G+
Sbjct: 22 LAQAVILLMLTP----LFTGISRQIRARMHSRRGPGIWQDYRDIHKLFKRQEVAPTSSGL 77
Query: 63 IFDFGIVFALGATILALMFIPLG-SISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPY 121
+F + + ++ M +PL ++S GDLI + +LL + + + +G+P+
Sbjct: 78 MFRLMPWVLISSMLVLAMALPLFITVSPFAGGGDLITLIYLLALFRFFFALSGLDTGSPF 137
Query: 122 AGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAIA 181
AG+GA R L + ++ L +++ LA G+ + E++ GW+ L +LA +A
Sbjct: 138 AGVGASRELTLGILVEPMLILSLLVLALIAGS-THIEMISNTLAMGWN-SPLTTVLALLA 195
Query: 182 YDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLG 241
GK PFD+ A E+ GP+ E+ G L + + GL + + +++F+
Sbjct: 196 CGFACFIEMGKIPFDVAEAEQELQEGPLTEYSGAGLALAK----WGLGLKQVVMASLFV- 250
Query: 242 GAVITTFS-SPILNTLATLGVLLIKQLAVLFVAILIS 277
A+ F + L+ L L++ L VL + +L S
Sbjct: 251 -ALFLPFGRAQELSLACLLTSLVVTLLKVLLIFVLAS 286
>sp|P77858|HYFC_ECOLI HYDROGENASE-4 COMPONENT C >gi|1616952|gb|AAB88565.1| (M63654) HyfC
[Escherichia coli]
Length = 315
Score = 92.4 bits (226), Expect = 6e-18
Identities = 75/277 (27%), Positives = 138/277 (49%), Gaps = 16/277 (5%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKE--NVTHGV 62
+ A+++L+ +F GI R++ AR+H R GP I+Q D KLF ++E + G+
Sbjct: 15 LAQAVILLMLTP----LFTGISRQIRARMHSRRGPGIWQDYRDIHKLFKRQEVAPTSSGL 70
Query: 63 IFDFGIVFALGATILALMFIPLG-SISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPY 121
+F + + ++ M +PL ++S GDLI + +LL + + + +G+P+
Sbjct: 71 MFRLMPWVLISSMLVLAMALPLFITVSPFAGGGDLITLIYLLALFRFFFALSGLDTGSPF 130
Query: 122 AGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAIA 181
AG+GA R L + ++ L +++ LA G+ + E++ GW+ L +LA +A
Sbjct: 131 AGVGASRELTLGILVEPMLILSLLVLALIAGS-THIEMISNTLAMGWN-SPLTTVLALLA 188
Query: 182 YDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLG 241
GK PFD+ A E+ GP+ E+ G L + + GL + + +++F+
Sbjct: 189 CGFACFIEMGKIPFDVAEAEQELQEGPLTEYSGAGLALAK----WGLGLKQVVMASLFV- 243
Query: 242 GAVITTFS-SPILNTLATLGVLLIKQLAVLFVAILIS 277
A+ F + L+ L L++ L VL + +L S
Sbjct: 244 -ALFLPFGRAQELSLACLLTSLVVTLLKVLLIFVLAS 279
>gi|11466020 NADH dehydrogenase ND1 subunit [Nicotiana tabacum]
>gi|2924282|emb|CAA77435.1| (Z00044) NADH dehydrogenase
ND1 subunit [Nicotiana tabacum]
Length = 363
Score = 92.1 bits (225), Expect = 8e-18
Identities = 80/317 (25%), Positives = 140/317 (43%), Gaps = 36/317 (11%)
Query: 9 ILILLYATFVGFM-FMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHG 61
IL L+ +G + + + R+++A + +RIGP I Q + D KL KEN+
Sbjct: 33 ILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLL-LKENLIPS 91
Query: 62 V----IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITF----LLEIPMLGIMFA 113
+F G A+ + L+ IP G VL DL + F + I +G++ +
Sbjct: 92 TGDTRLFSIGPSIAVISIFLSYSVIPFGDHLVL---ADLSIGVFFWIAISSIAPVGLLMS 148
Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GWSI 170
S N Y+ +G RA ++ ++PL +++++ + ST +IV AQ + GW++
Sbjct: 149 GYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLLSNSLSTVDIVEAQSKYGFWGWNL 208
Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
+ P + I + I A + PFD+ A E+ G E+ G G+ + + L
Sbjct: 209 WRQP--IGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLV 266
Query: 231 ETLFFSNIFLGGAVIT------------TFSSPILNTLATLGVLLIKQLAVLFVAILIST 278
+LF + ++LGG ++ + TL + + L K LF+ I
Sbjct: 267 SSLFVTVLYLGGWNLSIPYIFVPELFGINKRGKVFGTLIGIFITLAKTYLFLFIPIATRW 326
Query: 279 IFPRFTIDQAAKFYWKW 295
PR +DQ WK+
Sbjct: 327 TLPRLRMDQLLNLGWKF 343
>sp|Q37165|NU1C_ARATH NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
>gi|1419474|emb|CAA66944.1| (X98298) ndhA [Arabidopsis
thaliana]
Length = 360
Score = 91.7 bits (224), Expect = 1e-17
Identities = 79/295 (26%), Positives = 135/295 (44%), Gaps = 32/295 (10%)
Query: 27 RKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVT----HGVIFDFGIVFALGATI 76
R+++A + +RIGP I Q + D KL K EN+ + +F G A+ + +
Sbjct: 52 REISAGIQQRIGPEYAGPLGILQALADGTKLLFK-ENLRPSRGNTPLFSIGPSIAVISIL 110
Query: 77 LALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLA 135
L+ IP + VL + L + I +G++ + S N Y+ +G RA ++
Sbjct: 111 LSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSIS 170
Query: 136 IQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GWSIFHLPLLLAAIAYDIVLQAMFGK 192
++PL +++++ + ST +IV AQ + GW+++ P + I + I A +
Sbjct: 171 YEIPLTLCVLSISLLSNSLSTVDIVEAQSKYGFWGWNLWRQP--IGFIIFLISSLAESER 228
Query: 193 EPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGGAVITTFSSPI 252
PFD+ A E+ G E+ G G+ V + L +LF + ++LGG SSP
Sbjct: 229 LPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGG---WNISSPY 285
Query: 253 LNTL----------ATLGVL--LIKQLAVLFVAILISTIFPRFTIDQAAKFYWKW 295
++ L T+G+ L K LFV+I PR +DQ WK+
Sbjct: 286 ISILELFQRDQIFATTIGIFITLAKTYLFLFVSIATRWTLPRLRMDQLLNLGWKF 340
>sp|P16430|HYCD_ECOLI FORMATE HYDROGENLYASE SUBUNIT 4 (FHL SUBUNIT 4) (HYDROGENASE 3
COMPONENT D) >gi|78774|pir||S08622 hydrogenase (EC
1.18.99.1) 3 chain 4 - Escherichia coli
>gi|41683|emb|CAA35549.1| (X17506) hycD [Escherichia
coli] >gi|882615|gb|AAA69232.1| (U29579) formate
hydrogenlyase subunit 4 [Escherichia coli]
>gi|1789077|gb|AAC75764.1| (AE000356) membrane-spanning
protein of hydrogenase 3 (part of FHL complex)
[Escherichia coli K12] >gi|1093497|prf||2104213D hycD
gene [Escherichia coli]
Length = 307
Score = 90.9 bits (222), Expect = 2e-17
Identities = 72/287 (25%), Positives = 127/287 (44%), Gaps = 10/287 (3%)
Query: 11 ILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKE--NVTHGVIFDFGI 68
++L+A V + GI R AR+H R GP + Q D IKL G++ G +F
Sbjct: 11 LVLFA--VAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSVGPDASGWVFRLTP 68
Query: 69 VFALGATILALMFIPLGSI-SVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQ 127
+G + +P+ ++ S L GDLI + +L I + + +G+P+ IGA
Sbjct: 69 YVMVGVMLTIATALPVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGSPFTAIGAS 128
Query: 128 RALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFH-LPLLLAAIAYDIVL 186
R + + ++ L + A+ G+ + I V+ W + +PL+LA A
Sbjct: 129 REAMLGVLVEPMLLLGLWVAAQVAGSTNISNIT--DTVYHWPLSQSIPLVLALCACAFAT 186
Query: 187 QAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGGAVIT 246
GK PFD+ A E+ GP+ E+ G G+++ ++ F +F+ +
Sbjct: 187 FIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVFIPWGQME 246
Query: 247 TFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
TF++ L L L + ++K + + V L R +D + W
Sbjct: 247 TFTAGGL--LLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITW 291
>gi|7525090 NADH dehydrogenase ND1 [Arabidopsis thaliana]
>gi|5881751|dbj|BAA84442.1| (AP000423) NADH
dehydrogenase ND1 [Arabidopsis thaliana]
Length = 360
Score = 90.9 bits (222), Expect = 2e-17
Identities = 76/292 (26%), Positives = 133/292 (45%), Gaps = 26/292 (8%)
Query: 27 RKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVT----HGVIFDFGIVFALGATI 76
R+++A + +RIGP I Q + D KL K EN+ + +F G A+ + +
Sbjct: 52 REISAGIQQRIGPEYAGPLGILQALADGTKLLFK-ENLRPSRGNTPLFSIGPSIAVISIL 110
Query: 77 LALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLA 135
L+ IP + VL + L + I +G++ + S N Y+ +G RA ++
Sbjct: 111 LSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSIS 170
Query: 136 IQVPLGFAIVALAEYYGTFSTYEIVMAQQVH---GWSIFHLPLLLAAIAYDIVLQAMFGK 192
++PL +++++ + ST +IV AQ + GW+++ P + I + I A +
Sbjct: 171 YEIPLTLCVLSISLLSNSLSTVDIVEAQSKYGFWGWNLWRQP--IGFIIFLISSLAECER 228
Query: 193 EPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGG--------AV 244
PFD+ A E+ G E+ G G+ V + L +LF + ++LGG ++
Sbjct: 229 LPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNISIPYISI 288
Query: 245 ITTFS-SPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKW 295
+ F I T + + L K LFV+I PR +DQ WK+
Sbjct: 289 LELFQRDQIFGTTIGIFITLAKTYLFLFVSIATRWTLPRLRMDQLLNLGWKF 340
>pir||B82822 NADH-ubiquinone oxidoreductase, NQO8 subunit XF0312 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105135|gb|AAF83123.1|AE003884_8 (AE003884)
NADH-ubiquinone oxidoreductase, NQO8 subunit [Xylella
fastidiosa]
Length = 330
Score = 90.5 bits (221), Expect = 2e-17
Identities = 76/287 (26%), Positives = 127/287 (43%), Gaps = 19/287 (6%)
Query: 27 RKVTARVHRRIGPP-----IYQPIIDTIKLFGKK---ENVTHGVIFDFGIVFALGATILA 78
RK+ +H R GP ++Q D KL K+ + H IF + L + A
Sbjct: 18 RKLIGWMHVRHGPMYVGMGLFQAFADVFKLLFKEVLYPSKAHKAIFVIAPLLTLAPSFAA 77
Query: 79 LMFIPLGSISVL-RAYGDLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLAIQ 137
+P + VL A L+ + + + + GI+ A +S + YA +GA R+ +++ +
Sbjct: 78 WAVVPFDTKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGAMRSAAQVVSYE 137
Query: 138 VPLGFAIVALAEYYGTFSTYEIVMAQQVHG--WSIFHLPLLLAAIAYDIVLQAMFGKEPF 195
+ +GFA+V + G+ + +IVMAQ + F +PL I Y + A + PF
Sbjct: 138 IAMGFALVGVMIAAGSLNLSQIVMAQAGSSGFFDWFLIPLFPLFIVYWVSGVAETNRSPF 197
Query: 196 DIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGGAV------ITTFS 249
D++ EI G MVE+ G + + + + S FLGG + ++
Sbjct: 198 DVVEGESEIVAGHMVEYSGSVFALFFLAEYANMILVSFLISIFFLGGWLSPIQGWVSGQV 257
Query: 250 SPILNTLATLG--VLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
SP+++ + G LL K L I FPR+ DQ + WK
Sbjct: 258 SPLIDWVWNGGWPWLLFKVLFFASAYIWFRASFPRYRYDQIMRLGWK 304
>emb|CAC12095.1| (AL445066) NADH dehydrogenase, subunit I related protein
[Thermoplasma acidophilum]
Length = 340
Score = 90.1 bits (220), Expect = 3e-17
Identities = 91/328 (27%), Positives = 145/328 (43%), Gaps = 34/328 (10%)
Query: 2 LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKK 55
L I I L++ + I RK AR+ RIGP + Q I D +KL GK
Sbjct: 16 LAYIFETIFFLIFVVVALIAMIYIFRKYMARLQLRIGPNRVGKFGLLQLIADALKLVGK- 74
Query: 56 ENVTHGVIFDFG------IVFALGATILALMFIPLGSI----SVLRAYGDLILITFLLEI 105
E++ + DF IVF ++ + IP GS S+ + ++ LI F I
Sbjct: 75 ESIIPKLRDDFAYKAAPYIVFI--GLVVGFVLIPYGSFYWIGSLTITHSNVSLILFFGAI 132
Query: 106 PML--GIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFS----TYEI 159
M+ G + A +SS N YA IGA R + ++ +VP+ + V+L S +E
Sbjct: 133 AMMPIGEVLAGISSHNKYAVIGAFRGIAKDVSFEVPMMISAVSLVMMDSALSRTPLNFET 192
Query: 160 VMAQQVHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGI 219
+++ Q + I L + + + A PFD+ + EI G E+ G G+
Sbjct: 193 LVSTQFIPFGILQ---PLGLFVFMVAMIARSSYTPFDLSESDSEIVSGYSTEYSGMRFGL 249
Query: 220 LQVQHAIGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTI 279
+ +F +L S ++LGG F+ P ++ A LLIK L ++ ++ LI
Sbjct: 250 FYMGMFGSIFLGSLVVSLLYLGG-----FNGP-YSSYAGFIYLLIKGLILVLISFLIWLS 303
Query: 280 FPRFTIDQAAKFYWKWPTIIAALGAILA 307
PR +D+ F WK I+ + I A
Sbjct: 304 MPRIRVDRFINFGWKILLPISIINLIWA 331
>gi|9653247 NADH dehydrogenase subunit 1 [Chondrus crispus]
>gi|1352537|sp|P48898|NU1M_CHOCR NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431891|pir||S59101 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - red
alga (Chondrus crispus) mitochondrion
>gi|1334495|emb|CAA87617.1| (Z47547) NADH dehydrogenase
(ubiquinone), subunit 1 [Chondrus crispus]
Length = 326
Score = 89.7 bits (219), Expect = 4e-17
Identities = 88/307 (28%), Positives = 144/307 (46%), Gaps = 23/307 (7%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
+L I+ IL LL A V +M + RKV A + RR GP I QP+ D +KLF K
Sbjct: 6 LLIKIITIILPLLVA--VAYMTLAE-RKVMAAIQRRKGPNIVGVFGLLQPLADGLKLFVK 62
Query: 55 KENVTHG---VIFDFGIVFALGATILALMFIPLGSISVLRAYGDL-ILITFLLEIPMLG- 109
+ + +IF + +++ IPLG V Y D+ I + ++L I LG
Sbjct: 63 ETILPSSANIIIFILAPILTFLLALVSWCVIPLGEGMV---YSDINIGVLYILAISSLGV 119
Query: 110 --IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
I+ + +S + YA +GA R+ +++ +V +G ++ + G+ + EIV+AQQ
Sbjct: 120 YGIITSGWASNSKYAFLGALRSAAQMVSYEVSIGLILINVLLCSGSLNFTEIVLAQQ-SI 178
Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
W F +PL I + I + A + PFD+ A E+ G VE+ + +
Sbjct: 179 W--FVIPLFPIFIMFYISILAETNRAPFDLPEAEAELVAGYNVEYSAMGFALFFLGEYAN 236
Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
+ + +F GG + F+ IL ++ +K +LF I I + FPR+ DQ
Sbjct: 237 MILMCSLTTILFFGG-WLPPFNLTILYWISPTVWFGLKTTFLLFGFIWIRSSFPRYRYDQ 295
Query: 288 AAKFYWK 294
+ WK
Sbjct: 296 LMRLGWK 302
>pir||D75387 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 DR1498
[similarity] - Deinococcus radiodurans (strain R1)
>gi|6459260|gb|AAF11065.1|AE001994_1 (AE001994) NADH
dehydrogenase I, H subunit [Deinococcus radiodurans]
Length = 397
Score = 89.7 bits (219), Expect = 4e-17
Identities = 74/334 (22%), Positives = 148/334 (44%), Gaps = 32/334 (9%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFG 53
+L ++ A+L+ L A F +M +I R++ R+ R GP + QP+ D IK
Sbjct: 8 LLITLLKAVLVAL-ALLTAFAYMTLIERRLLGRIQLRPGPNRVGPMGLLQPLADAIKSIF 66
Query: 54 KKE---NVTHGVIFDFGIVFALGATILALMFIPLGSIS--------VLRAYGDLILITFL 102
K++ + +++ + A+G + A IP G V ++ + L
Sbjct: 67 KEDVTVTLADKLVYTLAPILAIGMALTAFGGIPAGPPGSLFGTDPWVYNLDAGILALLAL 126
Query: 103 LEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMA 162
+ + GI +SG+ Y +G+ R+ +++ ++ +G +++ L G+ + +IV
Sbjct: 127 TSMGVYGIFLGGWASGSKYPMLGSLRSSAQMISYELGMGLSVLGLLMLVGSTNFLDIVEW 186
Query: 163 Q---QVHGWSIFHLPLLLAAIAYDIVLQAMFG---KEPFDIMIAPGEISLGPMVEFGGKY 216
Q + HGW I L A+ + + + F + PFD+ A E+ G + E+
Sbjct: 187 QAGPRGHGWLI-----LFQVFAFALFMVSSFAEVNRTPFDLPEAEQELVAGYLTEYSSIK 241
Query: 217 LGILQVQHAIGLFAETLFFSNIFLGGAVITTFSSPILNTLAT--LGVLLIKQLAVLFVAI 274
+ Q+ + + + S +F GG TF P++ +++ L L+ K +F+ I
Sbjct: 242 WALFQMAEYVNIMTASALMSTLFFGGYRGPTFLEPLIPGISSWPLVWLIAKIAFFMFLFI 301
Query: 275 LISTIFPRFTIDQAAKFYWKWPTIIAALGAILAS 308
+ PR DQ + WK +A + ++ +
Sbjct: 302 WVRATLPRLRYDQLMRLGWKLTLPLALVNTLVVA 335
>gb|AAG19140.1| (AE005012) NADH dehydrogenase/oxidoreductase; NdhG4 [Halobacterium
sp. NRC-1]
Length = 314
Score = 89.7 bits (219), Expect = 4e-17
Identities = 79/305 (25%), Positives = 125/305 (40%), Gaps = 35/305 (11%)
Query: 27 RKVTARVHRRIGPPIYQP------IIDTIKLFGKKENVTHGV---IFDFGIVFALGATIL 77
RK+TA RI P ++D+++L K+ + GV +D + G+ +
Sbjct: 14 RKITAAFTDRISVNRVGPWGLGTIVVDSVRLLSKELVIPEGVDRPAYDLAPIVLAGSALF 73
Query: 78 ALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLAI 136
A IP+G+ I + L+ + + I LG++ +S N Y+ +G RA+ +A
Sbjct: 74 AFAVIPMGNGIQLADPEVGLVFVFAIASIASLGLIMGGYASNNKYSLLGGLRAVAQNIAY 133
Query: 137 QVPLGFAIVALAEYYGTFSTYEIVMAQQ-----------VHGWSIFHLPLLLAAIAYDIV 185
++PL ++ + GT EIV QQ + W F P A + + +
Sbjct: 134 EIPLVLTAASVVLFTGTLQLSEIVAIQQNTTLATIAGVRIPAWFAFVNP--FAFVLFVVA 191
Query: 186 LQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGGAVI 245
A G+ PFD AP EI G E+ Y + + F +IFLGGA+I
Sbjct: 192 NLAEVGRNPFDTPEAPTEIVAGYQTEYSSAYFVLFYLGE----------FIHIFLGGAII 241
Query: 246 TT--FSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPTIIAALG 303
T P L IK AV F + PR IDQ WK +++
Sbjct: 242 ATLFLGGPGGPFLPGFVWFTIKIWAVYFFTQWCRSAIPRVRIDQLIGIGWKGLLVLSFAN 301
Query: 304 AILAS 308
+L +
Sbjct: 302 LVLTA 306
>gi|11497479 NADH dehydrogenase (ubiquinone), subunit 1 [Prototheca wickerhamii]
>gi|7431941|pir||T11938 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Prototheca wickerhamii
mitochondrion >gi|467870|gb|AAD12657.1| (U02970) NADH
dehydrogenase (ubiquinone), subunit 1 [Prototheca
wickerhamii]
Length = 328
Score = 88.5 bits (216), Expect = 9e-17
Identities = 82/308 (26%), Positives = 138/308 (44%), Gaps = 21/308 (6%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFG 53
++ IV IL L + F+ + RKV A + RR GP I+QPI D +KL
Sbjct: 4 LISSIVLKILALTVPLILSVAFLVLAERKVLASMQRRKGPNVVGIYGIFQPIADGLKLIV 63
Query: 54 KKENVTHG---VIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLG 109
K+ + VIF F V + +A IP G + + + L+ + + + + G
Sbjct: 64 KEPVLPSSANLVIFLFAPVLTFLLSQVAWASIPFGEGLVIADIHAGLLYVFAISSLGIYG 123
Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
++ A SS + YA +G+ R+ +++ +V +G ++ + G+ + EIV+AQ +
Sbjct: 124 VITAGWSSNSKYAFLGSCRSAAQMVSYEVSIGLILITVCICAGSLNLTEIVIAQTQIWYC 183
Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
I PLL I + I A + PFD+ A E+ G VE+ + +G +
Sbjct: 184 IPLFPLL---IMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALF----FLGEY 236
Query: 230 AETLFFSN---IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
A + S+ IF G + F I + + +K + LF I + FPR+ D
Sbjct: 237 ANMIVMSSLCCIFFLGGWLPPFDFAIFYWIPGVFWFSLKVVFFLFAFIWVRAAFPRYRYD 296
Query: 287 QAAKFYWK 294
Q + WK
Sbjct: 297 QLMRLGWK 304
>pir||A71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO8 -
Helicobacter pylori (strain J99)
>gi|4155778|gb|AAD06754.1| (AE001545) NADH
oxidoreductase I [Helicobacter pylori J99]
Length = 329
Score = 88.2 bits (215), Expect = 1e-16
Identities = 90/322 (27%), Positives = 139/322 (42%), Gaps = 31/322 (9%)
Query: 9 ILILLYATFVGFMFMGIIRKVTARVHRRIGP------PIYQPIIDTIKLFGKKENVTHGV 62
IL+ +++ GF I RKV A RR+GP + Q D IKLF K++ + G
Sbjct: 14 ILVAVFSALGGFATY-IERKVLAYFQRRLGPCYVGPFGLLQVAADGIKLFTKEDIIPQGA 72
Query: 63 ---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILIT-------FLLEIPMLGI-- 110
IF + A+ + +++ IP L Y LI+ F L + GI
Sbjct: 73 NKFIFTLAPIIAMVSAFVSMAPIPFFPNFTLFGYEIKPLISDINIGFLFFLAVGSAGIYA 132
Query: 111 -MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ--VHG 167
+ A ++S N Y+ IG+ RA + LL+ +V I+A G+ S EI Q
Sbjct: 133 PILAGLASNNKYSLIGSARATIQLLSFEVVSTLTILAPLMVVGSLSLVEINHYQSGGFLD 192
Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
W +F P LA + + I A + PFD++ EI G E+ G G+ +
Sbjct: 193 WLVFKQP--LAFVLFLIASYAELNRTPFDLLEHEAEIVAGYCTEYSGLKWGMFFLAEYAH 250
Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
LFA + S +F GG F I +A +LIK +F+++ + +P DQ
Sbjct: 251 LFAFSFVISIVFFGGFNAWGF---IPGGIA----ILIKAGFFVFLSMWVRATYPHVRPDQ 303
Query: 288 AAKFYWKWPTIIAALGAILASL 309
WK +A L +L +
Sbjct: 304 LMNMCWKIMLPLALLNIVLTGI 325
>sp|P06254|NU1C_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
Length = 367
Score = 87.8 bits (214), Expect = 2e-16
Identities = 81/321 (25%), Positives = 140/321 (43%), Gaps = 40/321 (12%)
Query: 9 ILILLYATFVGFM-FMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHG 61
IL L+ +G + + + R+++A + +RIGP I Q + D KL KEN+
Sbjct: 33 ILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLL-LKENLIPS 91
Query: 62 V----IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITF----LLEIPMLGIMFA 113
+F G A+ + L+ IP G VL DL + F + I +G++ +
Sbjct: 92 TGDTRLFSIGPSIAVISIFLSYSVIPFGDHLVL---ADLSIGVFFWIAISSIAPVGLLMS 148
Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALA----EYYGTFSTYEIVMAQQVHG-- 167
S N Y+ +G RA ++ ++PL +++++ + ST +IV AQ +G
Sbjct: 149 GYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLRVIRLSNSLSTVDIVEAQSKYGFW 208
Query: 168 -WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAI 226
W+++ P+ I + I A + PFD+ A E+ G E+ G G+ V +
Sbjct: 209 GWNLWRQPI--GFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFTVASYL 266
Query: 227 GLFAETLFFSNIFLGGAVIT------------TFSSPILNTLATLGVLLIKQLAVLFVAI 274
L +LF + ++LGG ++ + TL + + L K LF+ I
Sbjct: 267 NLLVSSLFVTVLYLGGWNLSIPYIFVPELFGINKRGKVFGTLIGIFITLAKTYLFLFIPI 326
Query: 275 LISTIFPRFTIDQAAKFYWKW 295
PR +DQ WK+
Sbjct: 327 ATRWTLPRLRMDQLLNLGWKF 347
>pir||C64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO8 -
Helicobacter pylori (strain 26695)
>gi|2314432|gb|AAD08311.1| (AE000631) NADH-ubiquinone
oxidoreductase, NQO8 subunit (NQO8) [Helicobacter pylori
26695]
Length = 329
Score = 87.8 bits (214), Expect = 2e-16
Identities = 90/322 (27%), Positives = 139/322 (42%), Gaps = 31/322 (9%)
Query: 9 ILILLYATFVGFMFMGIIRKVTARVHRRIGP------PIYQPIIDTIKLFGKKENVTHGV 62
IL+ +++ GF I RKV A RR+GP + Q D IKLF K++ + G
Sbjct: 14 ILVAVFSALGGFATY-IERKVLAYFQRRLGPCYVGPFGLLQVAADGIKLFTKEDIIPQGA 72
Query: 63 ---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILIT-------FLLEIPMLGI-- 110
IF + A+ + +++ IP L Y LI+ F L + GI
Sbjct: 73 NKFIFTLAPIIAMVSAFVSMAPIPFFPNFTLFGYEIKPLISDINIGFLFFLAVGSAGIYA 132
Query: 111 -MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ--VHG 167
+ A ++S N Y+ IG+ RA + LL+ +V I+A G+ S EI Q
Sbjct: 133 PILAGLASNNKYSLIGSARATIQLLSFEVVSTLTILAPLMVVGSLSLVEINHYQSGGFLD 192
Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
W +F P LA + + I A + PFD++ EI G E+ G G+ +
Sbjct: 193 WLVFKQP--LAFVLFLIASYAELNRTPFDLLEHEAEIVAGYCTEYSGLKWGMFFLAEYAH 250
Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
LFA + S +F GG F I +A +LIK +F+++ + +P DQ
Sbjct: 251 LFAFSFVISIVFFGGFNAWGF---IPGGIA----ILIKAGFFVFLSMWVRATYPHVRPDQ 303
Query: 288 AAKFYWKWPTIIAALGAILASL 309
WK +A L +L +
Sbjct: 304 LMDMCWKIMLPLALLNIVLTGI 325
>gi|11465632 NADH dehydrogenase subunit 1 [Porphyra purpurea]
>gi|7431949|pir||T11227 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - red alga (Porphyra purpurea)
mitochondrion >gi|4106939|gb|AAD03106.1| (AF114794) NADH
dehydrogenase subunit 1 [Porphyra purpurea]
Length = 328
Score = 87.8 bits (214), Expect = 2e-16
Identities = 85/310 (27%), Positives = 142/310 (45%), Gaps = 29/310 (9%)
Query: 4 VIVNAILIL--LYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
+I+N I I+ + + +M + RKV A + RR GP + QP+ D +KLF K
Sbjct: 5 IIINIIKIITIIIPLLIAVAYMTLAERKVMAAMQRRKGPNVVGIFGLLQPLADGLKLFSK 64
Query: 55 KENVTHGV---IFDFGIVFALGATILALMFIPLGSISVLRAYGDL-ILITFLLEIPMLG- 109
+ + IF V +LA +PL V + DL + + ++L I LG
Sbjct: 65 ETVLPSSANISIFLAAPVLTFLLAMLAWCVLPLDEGKV---FSDLNVGVLYILAISSLGV 121
Query: 110 --IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
I+ A SS + YA +GA R+ +++ +V +G ++ + GT + +IV+AQQ +
Sbjct: 122 YGIITAGWSSNSKYAFLGALRSAAQMVSYEVSIGLILINVLLCAGTLNLTQIVLAQQ-NI 180
Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
W I +PL I + I + A + PFD+ A E+ G VE+ + +G
Sbjct: 181 WYI--VPLFPVFIMFYISILAETNRAPFDLPEAEAELVAGYNVEYSAMGFALF----FLG 234
Query: 228 LFAETLF---FSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFT 284
+A + + IF G + F+ P + + +K +LF I + FPR+
Sbjct: 235 EYANMILMCSLTTIFFFGGWLPLFNIPPFYWIPPVIWFGLKTTLLLFGFIWVRAAFPRYR 294
Query: 285 IDQAAKFYWK 294
DQ + WK
Sbjct: 295 YDQLMRLGWK 304
>sp|P48899|NU1M_CYACA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|2147754|pir||S62765 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - red
alga (Cyanidium caldarium) mitochondrion
>gi|758181|emb|CAA88775.1| (Z48930) NADH dehydrogenase
subunit 1 [Cyanidium caldarium]
Length = 344
Score = 87.0 bits (212), Expect = 3e-16
Identities = 81/310 (26%), Positives = 139/310 (44%), Gaps = 23/310 (7%)
Query: 4 VIVNAILILLYATFVGFMFMGII---------RKVTARVHRRIGPPIY------QPIIDT 48
+I N I+ILL+ + ++ II RK+ + +R GP I QPI D
Sbjct: 14 LIFNFIIILLFIKSLSYIIPLIIAIAYLTLIERKIIGSIQKRKGPNIVGIFGLLQPIADG 73
Query: 49 IKLFGKKENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDL-ILITFLLEIPM 107
+KL K+ ++ + I+ + LAL + + + Y +L I I +LL I
Sbjct: 74 LKLLLKETSLPNSANIFIFIIAPILTFFLALCAWAIMPFNEINFYSNLNIGILYLLAISS 133
Query: 108 LG---IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ 164
LG I+ + +S + YA +G R+ +++ +V +G I+ + GT + EIV+AQQ
Sbjct: 134 LGVYGIIISGWASNSKYAFLGGLRSAAQIISYEVSIGLIIINVLLCSGTLNLKEIVLAQQ 193
Query: 165 VHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQH 224
+ W IF PL + + I A + PFD+ A E+ G VE+ + +
Sbjct: 194 -NIWYIF--PLFPLFLMFFISSLAETNRSPFDLPEAEAELVAGYNVEYSAMGFALFFLGE 250
Query: 225 AIGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFT 284
+ + + +FL G + F + N + K + +L + I + FPR+
Sbjct: 251 YTNIILISAVSTILFLAG-WLPPFDIFLFNWIPNSIWFGFKTIIILVLFIWVRAAFPRYR 309
Query: 285 IDQAAKFYWK 294
DQ + WK
Sbjct: 310 YDQLIQLGWK 319
>gi|8954370 NADH dehydrogenase subunit 1 [Cyanidioschyzon merolae]
>gi|7431915|pir||C58931 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Cyanidioschyzon merolae
mitochondrion >gi|4115783|dbj|BAA36521.1| (D89861)
NADH-ubiquinone oxidoreductase chain 1 [Cyanidioschyzon
merolae]
Length = 330
Score = 87.0 bits (212), Expect = 3e-16
Identities = 77/305 (25%), Positives = 138/305 (45%), Gaps = 19/305 (6%)
Query: 4 VIVNAI--LILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
VI+N I ++++ V ++ + RK+ + +R GP + QP+ D +KLF K
Sbjct: 6 VIINLIKGILIIVPLLVSVAYLILAERKIIGAIQKRKGPNVVGMFGLLQPLADGLKLFVK 65
Query: 55 KE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGI 110
+ N + I+ + ++ + IP VL L+ + + + + GI
Sbjct: 66 ETILPNSANIFIYIIAPIITFFLSLASWAVIPFDEGFVLTDLSMGLLYLLAISSLAVYGI 125
Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
+ A SS + YA +G R+ +++ +V +GF I+ + G+ + EIV+AQQ SI
Sbjct: 126 IIAGWSSNSKYAFLGGLRSAAQIISYEVSIGFIIINVLLCAGSLNLSEIVLAQQ----SI 181
Query: 171 FH-LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
++ +PL + + I A + PFD+ A E+ G VE+ + + +
Sbjct: 182 WYIIPLFPLFLLFFISSLAETNRAPFDLPEAEAELVAGYNVEYSAITFALFFLGEYTNII 241
Query: 230 AETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAA 289
+ F + IF GG + F+ IL + IK +LF + + FPR+ DQ
Sbjct: 242 LISSFITTIFFGG-WLPPFNMIILQWIPGTIWFGIKVTLLLFAFVWVRAAFPRYRYDQLI 300
Query: 290 KFYWK 294
WK
Sbjct: 301 YLSWK 305
>gi|9695396 NADH dehydrogenase subunit 1 [Phytophthora infestans]
>gi|6692648|gb|AAF24791.1|U17009_24 (U17009) NADH
dehydrogenase subunit 1 [Phytophthora infestans]
Length = 326
Score = 87.0 bits (212), Expect = 3e-16
Identities = 82/311 (26%), Positives = 141/311 (44%), Gaps = 26/311 (8%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
M+ I+ ++++L F + RKV A + RR GP + QP+ D +KLF K
Sbjct: 1 MIYTILKFLILVLPLLIAVAYFTLVERKVLASIQRRRGPNVVGTFGLLQPLADGLKLFVK 60
Query: 55 KENVTHG---VIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLG-- 109
+ + ++F F + A ++L+ IPLG I I +LL I LG
Sbjct: 61 ETILPSNADVILFIFAPILAFFLSLLSWTVIPLGFGMFFTELN--IGILYLLAISSLGVY 118
Query: 110 -IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
I+ SS + Y+ +GA R+ +++ ++ +GF+I+++ + + IV+AQ+ W
Sbjct: 119 GIIIGGWSSNSKYSFLGALRSTAQMISYELTIGFSILSVIICAKSLNLISIVLAQKT-VW 177
Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
F PL + + I A + PFD+ A E+ G VE+ + +G
Sbjct: 178 YCF--PLFPIFLIFFISCLAETNRHPFDLPEAEAELVSGYNVEYSAMGFALF----FLGE 231
Query: 229 FAETLFFSN----IFLGGAVIT-TFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRF 283
+A L S+ +FLGG + FS +N L IK + + ++ + PR+
Sbjct: 232 YANMLLMSSLTTILFLGGWLAPFPFSIKFINFLPGSFWFSIKVCFFVVLFVVARAVLPRY 291
Query: 284 TIDQAAKFYWK 294
DQ + WK
Sbjct: 292 RYDQLMRLGWK 302
>emb|CAA69811.2| (Y08502) NADH dehydrogenase subunit 1 [Arabidopsis thaliana]
Length = 325
Score = 87.0 bits (212), Expect = 3e-16
Identities = 84/301 (27%), Positives = 135/301 (43%), Gaps = 23/301 (7%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NV 58
IL ++ +G F+ + RKV A V RR GP + QP+ D +KL K+ +
Sbjct: 9 ILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSS 68
Query: 59 THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAMSS 117
+ +F V +++A +P VL +L F + + + GI+ A SS
Sbjct: 69 ANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSS 128
Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
+ YA +GA R+ +++ +V +G ++ + G+ + EIVMAQ+ W F +PL
Sbjct: 129 NSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQK-QIW--FGIPLFP 185
Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
+ + I A + PFD+ A E+ G VE Y + +G +A + S
Sbjct: 186 VLVMFFISCLAETNRAPFDLPEAEAELVAGYNVE----YSSMGSALFFLGEYANMILMSG 241
Query: 238 I----FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
+ FLGG + PI + L IK L LF+ I + FPR+ DQ W
Sbjct: 242 LCTLFFLGG-WLPILDLPIFKKIPGLIWFSIKVLFFLFLYIWVRAAFPRYRYDQLMGLGW 300
Query: 294 K 294
K
Sbjct: 301 K 301
>sp|P57258|NUOH_BUCAI NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
H) >gi|10038843|dbj|BAB12878.1| (AP001118) NADH
dehydrogenase I chain H [Buchnera sp. APS]
Length = 322
Score = 86.6 bits (211), Expect = 3e-16
Identities = 78/297 (26%), Positives = 131/297 (43%), Gaps = 21/297 (7%)
Query: 9 ILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKENV---T 59
I ILL F M + R++ A R GP Q D IK+ K++ + +
Sbjct: 19 IFILLLIVFSSAMLSIVERRLLAVFQNRYGPNRVGWMGSLQLCADMIKILFKEDWIPPFS 78
Query: 60 HGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLL-EIPMLGIMFAAMSSG 118
IF V A + + + IP S V+ IL ++ + + I+FA SS
Sbjct: 79 RKFIFVLSPVIAFTSLLCVIPIIPFTSHFVIIDLNIGILFFLMMASLSVYAILFAGWSSN 138
Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
N YA +GA RA + L+ +V LG +++ + G+F +IV +Q+ + W++F P
Sbjct: 139 NKYALLGAMRACVQTLSYEVFLGLSLMGVVAQSGSFKISDIVNSQK-YIWNVF--PQFFG 195
Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
+ + I A+ + PFD + E++ G +E+ G G+ + I + + +
Sbjct: 196 FLTFLIAGLAVCHRHPFDQPESEQELADGYHIEYSGMKFGLFFIGEYISIITVSSLIVTL 255
Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKW 295
F GG + S I ++K + +F+ ILI PR DQ F WK+
Sbjct: 256 FFGGWLGPWIPSCIW--------FILKIIFFIFLFILIRAALPRPRYDQVLLFGWKF 304
>pir||B40358 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - garden
petunia mitochondrion
Length = 325
Score = 86.2 bits (210), Expect = 5e-16
Identities = 78/297 (26%), Positives = 133/297 (44%), Gaps = 15/297 (5%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NV 58
IL ++ +G F+ + RKV A V RR GP + QP+ D +KL K+ +
Sbjct: 9 ILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSS 68
Query: 59 THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAMSS 117
+ +F V +++A +P VL +L F + + + GI+ A SS
Sbjct: 69 ANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSS 128
Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
+ YA +GA R+ +++ +V +G ++ + G+ + EIVMAQ+ W F +PL
Sbjct: 129 NSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQK-QIW--FGIPLFP 185
Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
+ + I A + PFD+ A E+ G VE+ + + + + ++
Sbjct: 186 VLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSGLCTS 245
Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+FLGG + PI + IK + LF+ I + FPR+ DQ WK
Sbjct: 246 LFLGG-WLPILDLPIFKKIPGSIWFSIKVIFFLFLYIWVRAAFPRYRYDQLMGLGWK 301
>sp|Q60010|NUOH_SALTY NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
H) (NUO8) >gi|897636|gb|AAC37140.1| (L42521) NADH
dehydrogenase subunit [Salmonella typhimurium]
Length = 325
Score = 86.2 bits (210), Expect = 5e-16
Identities = 74/304 (24%), Positives = 133/304 (43%), Gaps = 22/304 (7%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
+L ++ +++L+ T FM G R++ R GP Q + D IK+F K
Sbjct: 12 LLSILKAVVILLVVVTCGAFMSFGE-RRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFK 70
Query: 55 KENV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGI 110
++ + + VIF + A + +L+ +P+ V+ I ++ + + +
Sbjct: 71 EDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGIWFFLMMAGLAVYAV 130
Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
+FA SS N Y+ +GA RA ++ +V LG +++ + G+F+ +IV Q H W++
Sbjct: 131 LFAGWSSNNKYSLLGAMRASAQTVSYEVFLGLSLMGVVAQAGSFNMTDIV-NNQAHLWNV 189
Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
+P + + I A+ + PFD E++ G +E+ G G+ V IG+
Sbjct: 190 --IPQFFGFVTFAIAGVAVCHRHPFDHPETEQELADGYHIEYSGMKFGLFFVGEYIGIVT 247
Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
+ +F GG + P L +K + + ILI PR DQ
Sbjct: 248 VSALMVTLFFGG-----WHGPFLPPFVWFA---LKTAFFMMMFILIRASLPRPRYDQVMS 299
Query: 291 FYWK 294
F WK
Sbjct: 300 FGWK 303
>sp|Q9ZCF7|NUOH_RICPR NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
H) >gi|7431892|pir||F71640 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain H RP796 - Rickettsia
prowazekii >gi|3861323|emb|CAA15222.1| (AJ235273) NADH
DEHYDROGENASE I CHAIN H (nuoH) [Rickettsia prowazekii]
Length = 339
Score = 85.8 bits (209), Expect = 6e-16
Identities = 74/313 (23%), Positives = 138/313 (43%), Gaps = 9/313 (2%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGP-PIYQPIIDTIKLFGKKENV- 58
++ + + IL + Y T+ +G+++ R +GP + QPI D +KL K+ +
Sbjct: 19 VVAITIPLILCVAYLTYAERRVIGLMQ--LRRGPNVVGPFGLLQPIADAVKLLFKEPIIP 76
Query: 59 --THGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAM 115
++F + +++ IP S VL ++ I + + + GI+ A
Sbjct: 77 TDADKILFILAPIITFVLSLIGWAVIPFSSGVVLADINVGVLYILAISSLSVYGIIIAGW 136
Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
+S + YA +GA R+ +++ +V +G I+ + GT + I+ AQ+ W I L L
Sbjct: 137 ASNSKYAFLGAIRSSAQMISYEVSMGLVIITVLLTTGTLNLSGIIEAQKTLPWWI-DLML 195
Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
L +I + I + A + PFD+ A E+ G VE+ + + + +
Sbjct: 196 LPMSIVFFISVLAETNRLPFDLPEAESELVAGYNVEYSSMGFALFFLGEYANMILVSAMT 255
Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKW 295
+ +FLGG + F+ L+ + + K +LF + I PR+ DQ + WK
Sbjct: 256 TTLFLGG-YLPPFNLSFLDCIPGFFWFVFKVGFLLFCFLWIRATLPRYRYDQLMRLGWKV 314
Query: 296 PTIIAALGAILAS 308
G +L S
Sbjct: 315 FLPFTLFGVVLVS 327
>emb|CAC14152.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 328
Score = 85.8 bits (209), Expect = 6e-16
Identities = 66/310 (21%), Positives = 135/310 (43%), Gaps = 28/310 (9%)
Query: 4 VIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKKEN 57
++ L++ + + RK+ + +R+GP + QP+ D IKL K+++
Sbjct: 10 IVFKVALVIAILLLLPLPLTWLERKIAGHMQQRMGPMRVGWHGLLQPVADGIKLLTKEDH 69
Query: 58 V---THGVIFDFGIVFALGATILALMFIPLG-SISVL---------RAYGDLILITFLLE 104
+ +F + AL + IP G S+SVL L+ + ++
Sbjct: 70 IPAEADRFLFKLAPILALAPPFVVFAAIPFGESVSVLGNEITLYISNLNVALLFVFAVIG 129
Query: 105 IPMLGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ 164
+ + G++F ++ + YA +G+ R +++ ++P+GFA++ + + S +IV A Q
Sbjct: 130 LEVYGVIFGGWAANSKYAVLGSLRTCAQMISYEIPMGFAVIGVVMLAQSMSLLDIVRA-Q 188
Query: 165 VHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQH 224
W++ + P + + + A + PFD+ A G++ G E+ G + V
Sbjct: 189 TDVWNVVYQP--IGFFVFFVAGLAEAQRIPFDLAEAEGDLGAGFHTEYSGIRFALFMVSE 246
Query: 225 AIGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFT 284
+ + ++ +F GG + +L L L L+K +++ + FPR+
Sbjct: 247 YVVMVLVSVLTVILFFGG------WNGVLIPLPPLLWFLLKVAFFVYLFMWFRFTFPRYR 300
Query: 285 IDQAAKFYWK 294
DQ WK
Sbjct: 301 YDQLMAIGWK 310
>pir||S49576 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - Arabidopsis
thaliana mitochondrion >gi|572521|emb|CAA57940.1|
(X82618) mitochondrial NADH dehydrogenase [Arabidopsis
thaliana]
Length = 325
Score = 85.4 bits (208), Expect = 8e-16
Identities = 82/301 (27%), Positives = 134/301 (44%), Gaps = 23/301 (7%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NV 58
IL ++ +G F+ + RKV A V RR GP + QP+ D +KL K+ +
Sbjct: 9 ILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSS 68
Query: 59 THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAMSS 117
+ +F V +++A +P VL +L F + + + GI+ A SS
Sbjct: 69 ANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSS 128
Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
+ YA +GA R+ +++ +V +G ++ + G+ + EIVMAQ+ W F +PL
Sbjct: 129 NSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQK-QIW--FGIPLFP 185
Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
+ + I A + PFD+ A E+ G VE+ + +G +A + S
Sbjct: 186 VLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALF----FLGEYANMILMSG 241
Query: 238 I----FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
+ FLGG + PI + IK L LF+ I + FPR+ DQ W
Sbjct: 242 LCTLFFLGG-WLPILDLPIFKKIPGSIWFSIKVLFFLFLYIWVRAAFPRYRYDQLMGLGW 300
Query: 294 K 294
K
Sbjct: 301 K 301
>pir||E70419 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoH2 -
Aquifex aeolicus >gi|2983789|gb|AAC07347.1| (AE000737)
NADH dehydrogenase I chain H [Aquifex aeolicus]
Length = 259
Score = 85.0 bits (207), Expect = 1e-15
Identities = 65/239 (27%), Positives = 108/239 (44%), Gaps = 22/239 (9%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
+L ++ ++ILL A +G + RKV A + RR GP + QP+ + +KL K
Sbjct: 8 LLFAVIKIVVILLIALGIGAFLTWVERKVAAHIQRRPGPMVVGWHGLLQPLANGLKLLTK 67
Query: 55 KE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG----------DLILITF 101
++ ++ I+ AL L +P G + Y L+L+
Sbjct: 68 EDLFPRYGDKFLYHLAIILALVPATLVFSVVPFGPEFEVFGYKVKPILSDVNVGLLLVFA 127
Query: 102 LLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVM 161
L + + + A +S + Y I + R L++ +V + FA++ GT STYEIV
Sbjct: 128 LGSMAVYAVALAGWASNSKYPLIASMRKAGVLVSYEVVITFAVMGPIMLAGTLSTYEIVQ 187
Query: 162 AQ-QVHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGI 219
Q + + W I+ P +A + Y A G+ PFD+ A E+ G VE+GG G+
Sbjct: 188 KQIEQNLWYIWVQP--IAFVVYMFAALAEMGRVPFDVQEAEAELVTGFTVEYGGMKFGL 244
>gb|AAF66631.1| (AF143001) NADH dehydrogenase subunit 1 [Rhinolophus ferrumequinum]
Length = 318
Score = 85.0 bits (207), Expect = 1e-15
Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 18/295 (6%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-NVTH 60
+L+L+ + F+ +I RKV + R GP + QPI D +KLF K+
Sbjct: 6 LLLLIVPILLAVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPIADAVKLFTKEPLRPLT 65
Query: 61 GVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGN 119
I F I L T+ M+ PL L ++ + + + + I+++ +S +
Sbjct: 66 SSISMFIIAPVLALTLALTMWTPLPMPHPLINLNLGVLFMLAMSSLAVYSILWSGWASNS 125
Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
YA IGA RA+ ++ +V L ++++ G+FS ++ Q+ H W IF P A
Sbjct: 126 KYALIGALRAVAQTISYEVTLAIILLSVLLLSGSFSLSNPIITQE-HMWLIF--PSWPLA 182
Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
+ + I A + PFD+ E+ G VE+ G + + + +F + +F
Sbjct: 183 MMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNIFTTTLF 242
Query: 240 LGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
LG + +PI+ L T +L K L + + I +PRF DQ WK
Sbjct: 243 LG-----AYHNPIMPELYTTNFVL-KSLLLTISGLWIRASYPRFRYDQLMHLLWK 291
>gi|11467140 nad1 [Marchantia polymorpha] >gi|462756|sp|P26845|NU1M_MARPO
NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1
>gi|282795|pir||S25993 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - liverwort (Marchantia polymorpha)
mitochondrion >gi|404357|gb|AAB27398.1| NADH
dehydrogenase subunit 1=nad1 gene product [Marchantia
polymorpha=liverworts, Peptide Mitochondrial, 328 aa]
>gi|786224|gb|AAC09438.1| (M68929) nad1 [Marchantia
polymorpha]
Length = 328
Score = 84.7 bits (206), Expect = 1e-15
Identities = 79/301 (26%), Positives = 131/301 (43%), Gaps = 15/301 (4%)
Query: 5 IVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKEN 57
+V IL ++ +G F+ + RKV A + RR GP + QP+ D +KL K+
Sbjct: 8 LVAKILGIIIPLLLGVAFLVLAERKVMASMQRRKGPNVVGILGLLQPLADGLKLMIKEPI 67
Query: 58 VTHGV---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFA 113
+ IF V + A IP V +L F + + + GI+ A
Sbjct: 68 LPSSANIFIFLMAPVLTFTLALCAWAVIPFDYGMVFSDLNIGVLYLFAISSLGVYGIITA 127
Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHL 173
+S + YA +GA R+ +++ +V +G ++++ G+ + EIV+A Q W +F
Sbjct: 128 GWASNSKYAFLGALRSAAQMVSYEVSIGLLLISVILCAGSCNFSEIVLA-QTRIWFVF-- 184
Query: 174 PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETL 233
PL + + I A + PFD+ A E+ G VE+ + + + +
Sbjct: 185 PLFPVFLMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSS 244
Query: 234 FFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
+ +FLGG + PI + IK L LFV I + FPR+ DQ + W
Sbjct: 245 LCTLLFLGG-WLPILDIPIFQVIPGSIWFSIKVLFFLFVYIWVRAAFPRYRYDQLMRLGW 303
Query: 294 K 294
K
Sbjct: 304 K 304
>sp|P31839|NU1M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|66136|pir||DNOBU1 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
evening primrose mitochondrion
Length = 331
Score = 84.3 bits (205), Expect = 2e-15
Identities = 78/297 (26%), Positives = 132/297 (44%), Gaps = 15/297 (5%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NV 58
IL ++ +G F+ + RKV A V RR GP + QP+ D +KL K+ +
Sbjct: 15 ILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSS 74
Query: 59 THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAMSS 117
+ +F V +++A +P VL +L F + + + GI+ A SS
Sbjct: 75 ANFSLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSS 134
Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
+ YA +GA R+ +++ +V +G ++ + G+ + EIVMAQ+ W F +PL
Sbjct: 135 NSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQK-QIW--FGIPLFP 191
Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
+ + I A + PFD+ A E+ G VE+ + + + + +
Sbjct: 192 VLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSGLCTL 251
Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+FLGG + PI + IK + LF+ I + FPR+ DQ WK
Sbjct: 252 LFLGG-WLPILDLPIFKKIPGSIWFSIKVIFFLFLYIWVRAAFPRYRYDQLMGLGWK 307
>gb|AAC69445.1| (AF009349) NADH dehydrogenase subunit 1 [Cucumaria miniata]
Length = 323
Score = 84.3 bits (205), Expect = 2e-15
Identities = 80/303 (26%), Positives = 135/303 (44%), Gaps = 24/303 (7%)
Query: 2 LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK- 54
++ ++ I ILL F+ + RKV + R GP I QP D +KLF K
Sbjct: 8 IQALIYIIPILLSVAFLTL----VERKVLGYMQFRKGPNIVGPYGILQPFADALKLFVKE 63
Query: 55 --KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMF 112
K + +F F L I +PL + S L L+LI L + + ++
Sbjct: 64 TLKPSTASPFLFFFSPFLFLTLAITLWSLVPLPNTS-LNINLSLLLILGLSSLSVYSLIG 122
Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFH 172
A +S + Y+ IG RA+ ++ ++ +G I+++ + +FS +I Q + W I
Sbjct: 123 AGWASNSKYSLIGGIRAIAQTISYEISMGLIILSILLWVNSFSLKDINEIQ--NNWWII- 179
Query: 173 LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAET 232
LP I + + A + PFD+ E+ G VE+ G + + +
Sbjct: 180 LPYFSLFIMWIVSTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMN 239
Query: 233 LFFSNIFLGGAVITTFS-SPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
L IFLGG+ + FS +PI+++L + +K L ++F + + +PRF DQ
Sbjct: 240 LLSVLIFLGGS--SPFSETPIISSL----TIALKTLLLVFWFLWVRASYPRFRYDQLMHL 293
Query: 292 YWK 294
WK
Sbjct: 294 TWK 296
>gi|7524983 NADH dehydrogenase subunit 1 [Dictyostelium discoideum]
>gi|3122447|sp|Q37313|NU1M_DICDI NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|2130173|pir||S68157 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - slime
mold (Dictyostelium discoideum) mitochondrion
>gi|699593|dbj|BAA03935.1| (D16466) NADH dehydrogenase
subunit 1 [Dictyostelium discoideum]
>gi|4958886|dbj|BAA78063.1| (AB000109) NADH
dehydrogenase subunit 1 [Dictyostelium discoideum]
Length = 317
Score = 83.9 bits (204), Expect = 2e-15
Identities = 81/308 (26%), Positives = 134/308 (43%), Gaps = 29/308 (9%)
Query: 1 MLRVIVNA---ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIK 50
ML +I+ LI++ +G F ++ RKV A + +R GP + QP+ D +K
Sbjct: 4 MLYIIIEGGLKSLIVIIGLLIGVAFATLLERKVMAAMQKRRGPNVVGFVGLLQPLADGLK 63
Query: 51 LFGKKEN---VTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGD-LILITFLLEIP 106
L K+ V +I+ + +I+ I +G SV + +I I + I
Sbjct: 64 LVLKETIIPIVADKLIYAIAPILTFTISIVLWSVIAVGVQSVFASINSGVIFILAISSIG 123
Query: 107 MLGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH 166
+ GI+ A +S + YA +G R+ +++ +V LG I+++ Y GT + EI M Q
Sbjct: 124 VYGIILAGWASNSKYAFLGGLRSAAQMVSYEVALGLIILSIITYAGTVNLQEI-MENQEK 182
Query: 167 GWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAI 226
W F +PLL + I + PFD+ A E+ G VE+ + +
Sbjct: 183 VW--FIIPLLPGFLLAFISALTETNRPPFDLPEAEAELVSGYNVEYSSTGFALFFLGEYA 240
Query: 227 GLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
+ ++ S FLGG V S+ IL + +G+L I + PR+ D
Sbjct: 241 NIILMSVLLSVFFLGGIV----SNKILGAMKGVGMLC--------SFIWVRATLPRYRYD 288
Query: 287 QAAKFYWK 294
Q WK
Sbjct: 289 QLMYLGWK 296
>sp|Q01148|NU1M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|66135|pir||DNWTU1 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - wheat
mitochondrion
Length = 325
Score = 83.9 bits (204), Expect = 2e-15
Identities = 78/290 (26%), Positives = 130/290 (43%), Gaps = 15/290 (5%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NV 58
IL L+ +G F+ + RKV A V RR GP + QP+ D +KL K+ +
Sbjct: 9 ILCLILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSS 68
Query: 59 THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAMSS 117
+ +F V +++A +P VL +L F + + + GI+ A SS
Sbjct: 69 ANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSS 128
Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
+ YA +GA R+ +++ +V +G ++ + G+ + EIVMAQ+ W F +PL
Sbjct: 129 NSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQK-QIW--FGIPLFP 185
Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
+ + I A + PFD+ A E+ G VE+ + + + + +
Sbjct: 186 VLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSGLCTL 245
Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
+FLGG + PI + IK L LF+ I + FPR+ DQ
Sbjct: 246 LFLGG-WLPILDLPISKKIPCSIWFSIKVLLFLFLYIWVRAAFPRYRYDQ 294
>pir||A69151 NADH dehydrogenase (ubiquinone), subunit 1 related protein -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621455|gb|AAB84899.1| (AE000824) NADH dehydrogenase
(ubiquinone), subunit 1 related protein
[Methanobacterium thermoautotrophicum]
Length = 287
Score = 83.5 bits (203), Expect = 3e-15
Identities = 81/296 (27%), Positives = 139/296 (46%), Gaps = 32/296 (10%)
Query: 2 LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTHG 61
+ ++ N I+ +L A +G + +G RKV AR+ RR GPP+ Q ++ T+K + K+ +
Sbjct: 1 MNLMGNIIVNVLIAFLIGSLLLGFQRKVMARIQRRPGPPVIQHLLHTLKFYVKESSFPRT 60
Query: 62 VIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPY 121
F I A+ AT+ + + VL G L+L + + + A SSG+PY
Sbjct: 61 AAMPFYI--AIAATLCGIWISAVIIGPVLE--GSLLLFFGIYALHKIVEHNAGSSSGSPY 116
Query: 122 AGIGAQRALLTLLAIQVPLGFAIVALAEYYGT--FSTYEIVMAQQVHGWSIFHLPLLLAA 179
+ RA+ + A ++PL FA++A+ Y T +I+ Q +HG + LP LAA
Sbjct: 117 GKLSCVRAVFS-AAAEMPL-FAVLAII-YLQTRKMIISDIIGYQSIHGPLLLKLP--LAA 171
Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
+ + +++ + PF I IS G E G G L + +I + F +F
Sbjct: 172 MMFFVLILSKAPYSPFSITKGKDIIS-GYETEHFGVLRGYLMISESIAWYMLLWIFLTVF 230
Query: 240 LGG----------AVITTF------SSPILNTLATLGVLLIKQLAVLFVAILISTI 279
+GG +ITT ++P+LN ++ + Q+ + FV I S +
Sbjct: 231 IGGLSLPLYILGMVIITTITAFINATTPMLNPNHSVAI----QVILAFVGIAGSIV 282
>gi|5834982 NADH dehydrogenase subunit 1 [Xenopus laevis]
>gi|128655|sp|P03890|NU1M_XENLA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|66134|pir||QXXL1M NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
African clawed frog mitochondrion
>gi|807683|gb|AAA66458.1| (M10217) NADH dehydrogenase 1
[Xenopus laevis]
Length = 323
Score = 83.1 bits (202), Expect = 4e-15
Identities = 85/307 (27%), Positives = 137/307 (43%), Gaps = 24/307 (7%)
Query: 1 MLRVIVNAILILLYAT--FVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKL 51
ML +I + I LLY + F+ +I RKV + R GP I QPI D +KL
Sbjct: 1 MLTIITHLINPLLYMIPILLAVAFLTLIERKVLGYMQHRKGPNIVGPTGLIQPIADGVKL 60
Query: 52 FGK---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPML 108
F K + + + +F AL + +P+ S+ ++ I L + +
Sbjct: 61 FIKEPVRPSTSSQTMFLIAPTMALALAMSIWAPLPM-PFSLADLNLGILFILALSSLAVY 119
Query: 109 GIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
I+ + SS + YA IGA RA+ ++ +V LG ++ + G F TY +M Q W
Sbjct: 120 TILGSGWSSNSKYALIGALRAVAQTISYEVTLGLILLCMIMLAGGF-TYTTLMTTQEQMW 178
Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIG 227
I +P A + I A + PFD+ E+ G VE+ GG + ++A
Sbjct: 179 LI--IPGWPMAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFSLAEYANI 236
Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
L TL + +FLG + + + P L T++ L+IK + + + + +PRF DQ
Sbjct: 237 LMMNTLSYLILFLGSSFM---NQPELTTIS----LMIKSSILSMIFLWVRASYPRFRYDQ 289
Query: 288 AAKFYWK 294
WK
Sbjct: 290 LMHLVWK 296
>pir||S34389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - jelly fungus
(Trimorphomyces papilionaceus) mitochondrion (fragment)
>gi|393384|emb|CAA52038.1| (X73821) NADH dehydrogenase
subunit 1 [Trimorphomyces papilionaceus]
Length = 332
Score = 83.1 bits (202), Expect = 4e-15
Identities = 86/320 (26%), Positives = 139/320 (42%), Gaps = 18/320 (5%)
Query: 1 MLRVIVNA--ILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKL 51
ML V+ N +LI+L + FM II RKV A + RR+GP + QP D +KL
Sbjct: 1 MLAVLYNLLEVLIVLVPILLSVAFMTIIERKVLAAMQRRVGPNKVGYYGVLQPFADALKL 60
Query: 52 FGKKENVTHGV---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPM 107
K+ + +F V L ++L IP G+ L + IL T + + +
Sbjct: 61 VVKETVIPAQATKSLFFLAPVITLIFSLLGWGVIPFGAGLTLSDFSLGILYTLAISSVGV 120
Query: 108 LGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
G++FA S+ + YA +G+ R+ +++ ++ L AI+ + G+F+ I+ Q+
Sbjct: 121 YGVLFAGWSANSKYAFLGSLRSTAQMISYELILSSAILTVILLTGSFNIISIIENQEAI- 179
Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
W F +PLL I + I A + PFD+ A E+ G E G +
Sbjct: 180 W--FVVPLLPMFIIFFISALAETNRTPFDLPEAESELVAGFFTEHSGMIFVFFFLGEYCS 237
Query: 228 LFAETLFFSNIFLGG-AVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
+ + + +F GG + F + L ++ VL +K F+ + PR D
Sbjct: 238 IVLMSTLTAILFFGGYNMPELFVNDTFINLQSI-VLGLKTCMFCFLFVWFRATLPRLRYD 296
Query: 287 QAAKFYWKWPTIIAALGAIL 306
Q F W IA IL
Sbjct: 297 QLMVFCWTGMLPIAIALVIL 316
>gi|5835067 NADH dehydrogenase subunit 1 [Petromyzon marinus]
>gi|3122452|sp|Q37603|NU1M_PETMA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|1085193|pir||S55004 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - sea
lamprey mitochondrion >gi|515486|gb|AAB08738.1| (U11880)
NADH dehydrogenase subunit 1 [Petromyzon marinus]
Length = 321
Score = 83.1 bits (202), Expect = 4e-15
Identities = 82/297 (27%), Positives = 135/297 (44%), Gaps = 24/297 (8%)
Query: 9 ILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKEN---VT 59
IL+L+ V F+ M + RK + R GP + QPI D +KLF K+
Sbjct: 10 ILVLMVLLAVAFLTM-VERKTLGYMQLRKGPNVVGFMGLLQPIADGVKLFLKEPVWPLAA 68
Query: 60 HGVIFDFGIVFALGATILALMFIPLG-SISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
++F + AL + M IP+ SIS + L++I + + + I+ + +S
Sbjct: 69 SPILFIVAPIMALTLALSLWMLIPMPQSISTINI--TLLVIMAISSLSVYAILGSGWASN 126
Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
+ YA IGA RA+ ++ +V LG ++ L G+FS + Q+ H W F L
Sbjct: 127 SKYALIGALRAVAQTISYEVSLGLILLCLVILTGSFSLQAFIYTQE-HTW--FLLSSWPL 183
Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFAETLFFSN 237
A + + A + PFD+ E+ G VE+ GG + +++ LF TL +
Sbjct: 184 AAMWFVSTLAETNRTPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILFMNTL-TAI 242
Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+FLG S LN L + +++ K ++ + + I +PRF DQ WK
Sbjct: 243 MFLG-----PLGSNNLNILPIINIMM-KATPLIILFLWIRASYPRFRYDQLMHLMWK 293
>gi|11466642 NADH dehydrogenase subunit 1 [Malawimonas jakobiformis]
>gi|10178680|gb|AAG13692.1|AF295546_18 (AF295546) NADH
dehydrogenase subunit 1 [Malawimonas jakobiformis]
Length = 323
Score = 83.1 bits (202), Expect = 4e-15
Identities = 79/310 (25%), Positives = 145/310 (46%), Gaps = 31/310 (10%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFG 53
+L +I+ I I++ +G ++ + RK+ + V R GP I QP+ D +KLF
Sbjct: 5 ILNIIIKIISIIV-PLLLGIAYLTLAERKILSAVQIRKGPNIIGFYGVLQPLADGLKLFL 63
Query: 54 KKE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLG 109
K+ N + +IF + + L IP VL IL F + + + G
Sbjct: 64 KETILPNRANLIIFIIAPILTFSLSFLGWAVIPFNHGLVLADLNIGILYLFAVSSLGVYG 123
Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
I+ + +S + YA +G+ R+ +++ +V +G ++++ G+ + +IV++Q+ S
Sbjct: 124 IITSGWASNSKYAFLGSLRSTAQMISYEVSIGLILISVLLCSGSLNLTQIVLSQK----S 179
Query: 170 IFHL-PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
++++ PL + + I + A + PFD+ EI G VE+ + +G
Sbjct: 180 VWYMIPLFPLFVLFFISILAETNRPPFDLPEGESEIVAGYNVEYSSMGSALF----FLGE 235
Query: 229 FAETLFFSNI----FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFT 284
+ + S++ F+GG + F P N LA IK L LF+ IL+ +PR+
Sbjct: 236 YGNIILMSSLCVVLFVGGWLSPIFFLP--NILA----FSIKVLFFLFLFILVRATYPRYR 289
Query: 285 IDQAAKFYWK 294
DQ + WK
Sbjct: 290 YDQLMRLGWK 299
>gi|11466583 NADH dehydrogenase subunit 1 [Rhodomonas salina]
>gi|10444170|gb|AAG17744.1|AF288090_20 (AF288090) NADH
dehydrogenase subunit 1 [Rhodomonas salina]
Length = 328
Score = 83.1 bits (202), Expect = 4e-15
Identities = 79/308 (25%), Positives = 139/308 (44%), Gaps = 33/308 (10%)
Query: 2 LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK 55
L +IV ++ + Y T + RKV A + +R GP + QP D +KL K+
Sbjct: 15 LAIIVPVLIAVAYLTLLE-------RKVMASMQQRRGPNVVGFFGLLQPFADGLKLLIKE 67
Query: 56 E---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIM 111
+ + IF F +F ++L+ IP G V + +LI F + + + G++
Sbjct: 68 TILPSSANTFIFIFAPIFTFLLSLLSWCVIPFGIDCVFLDFNIGVLIIFAISSLGVYGVV 127
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
A SS + Y+ +G R+ +++ +V +G I+ + G+ + +I+ AQ +F
Sbjct: 128 LAGWSSNSKYSFLGGLRSAAQMISYEVSIGLLIMPVLICAGSLNLSKIIEAQN----DVF 183
Query: 172 HL-PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
++ PL I + I A + PFD+ A E+ G F +Y + +G ++
Sbjct: 184 YIIPLFPVFIMFFISALAETNRAPFDLPEAEAELVSG----FNTEYSAMAFALFFLGEYS 239
Query: 231 ETLFFSNI----FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
+ ++ FLGG V FS LN + + +K +LF I + FPR+ D
Sbjct: 240 NIILICSVTTIFFLGGWV-PVFS--FLNFIPGVVWFGLKTTFLLFAFIWVRAAFPRYRYD 296
Query: 287 QAAKFYWK 294
Q + WK
Sbjct: 297 QLMRLGWK 304
>gi|11466477 NADH dehydrogenase subunit 1 [Chrysodidymus synuroideus]
>gi|7110474|gb|AAF36946.1|AF222718_20 (AF222718) NADH
dehydrogenase subunit 1 [Chrysodidymus synuroideus]
Length = 326
Score = 82.7 bits (201), Expect = 5e-15
Identities = 78/306 (25%), Positives = 135/306 (43%), Gaps = 25/306 (8%)
Query: 4 VIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE 56
+I IL ++ + + + RK+ +HRR GP + QP+ D KLF K+
Sbjct: 6 IIFIKILFIIVPLLISVAYFTLAERKILGAIHRRRGPNVVGVMGLLQPLSDGFKLFVKEA 65
Query: 57 NV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLL--EIPMLGIM 111
V ++ +IF ++L +P S L A +L ++ FL + + GI+
Sbjct: 66 IVPSSSNKLIFILSPAVTFIISLLGWAIVPFNKYSTL-AEINLGILYFLAISSLGIYGII 124
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
+ SS + YA +G+ R+ +++ +V +GF I + G+F+ EI+ +Q+ + I
Sbjct: 125 MSGWSSNSKYAFLGSLRSTAQMISYEVAIGFIITTIIISVGSFNLQEIIDSQKFCWFIIT 184
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
PL L + I A + PFD+ A E+ G VE+ + + +
Sbjct: 185 FFPLFL---MFSISGLAETNRHPFDLPEAESELVSGYNVEYSAMSFALFSLGEYSNMLLM 241
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL---ISTIFPRFTIDQA 288
+ F + +FLGG + SP L+ L + + + F IL I PR+ DQ
Sbjct: 242 SSFVTILFLGG-----WQSP-LSLLIFIPNSFWFGIKISFFVILFVWIRAALPRYRYDQL 295
Query: 289 AKFYWK 294
WK
Sbjct: 296 MSLGWK 301
>emb|CAB52765.1| (AJ243655) transmembrane protein 31.3 kDa (conserved)
[Methanobacterium thermoautotrophicum]
Length = 287
Score = 81.9 bits (199), Expect = 9e-15
Identities = 76/295 (25%), Positives = 137/295 (45%), Gaps = 26/295 (8%)
Query: 2 LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENVTHG 61
+ ++ N I+ + A VG + +G R+V AR+ RR GPP+ Q ++ T+K + K+ +
Sbjct: 1 MNLMGNIIVNVTIAFLVGSLLLGFQREVMARIQRRPGPPVIQHLLHTLKFYIKESSFPRT 60
Query: 62 VIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGNPY 121
F + A+ AT+ + + VL G L+L + + + A SSG+PY
Sbjct: 61 AAMPFYV--AIAATLCGIWISAVIVGPVLE--GSLLLFFGIYALHKIVEHNAGSSSGSPY 116
Query: 122 AGIGAQRALLTLLAIQVPLGFAIVALAEYY-GTFSTYEIVMAQQVHGWSIFHLPLLLAAI 180
+ RA+ + A ++PL FA++A+ T +I+ Q +HG I LP LAA+
Sbjct: 117 GKLSCVRAVFS-AAAELPL-FAVLAIIYLQTRTMMISDIIGYQSIHGPLILKLP--LAAM 172
Query: 181 AYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFL 240
+ +++ + PF I IS G E G G L + +I + F +F+
Sbjct: 173 MFFVLILSKAPYSPFSITKGKDIIS-GYETEHFGVLRGYLMISESIAWYMLLWIFLTVFI 231
Query: 241 GG-------------AVITTF---SSPILNTLATLGVLLIKQLAVLFVAILISTI 279
GG +T F ++P+LN ++ + +I A + +I++ +
Sbjct: 232 GGLSLPLYILGMVIITAVTAFINATTPMLNPNHSVAIQVILAFAGIAGSIILMLV 286
>gi|11466331 NADH dehydrogenase subunit 1 [Cafeteria roenbergensis]
>gi|6180113|gb|AAF05810.1|AF193903_33 (AF193903) NADH
dehydrogenase subunit 1 [Cafeteria roenbergensis]
Length = 336
Score = 81.9 bits (199), Expect = 9e-15
Identities = 69/314 (21%), Positives = 142/314 (44%), Gaps = 23/314 (7%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
+L+ I+ + ++++ ++ + R++ V RR GP + Q I D +KL K
Sbjct: 5 ILKQILYFLALIIFVLLSVAFYVLLERQILGHVTRRQGPSTVGIFGLLQTIADALKLLAK 64
Query: 55 KE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGI 110
+ + ++F F +F G + + IP G+ + + ++ + L + + I
Sbjct: 65 ESVFPRSINTIVFIFAPIFTCGLALANWVVIPFGNGWAVADFNLGVLYLLALSSLSVHSI 124
Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
+ A SS + YA +GA R+ +++ ++ +G ++++ + + +IVMA Q + W
Sbjct: 125 IMAGWSSNSKYAFLGALRSAAQMISYEIAMGLILLSVILLSQSLNLTDIVMA-QYNVW-- 181
Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
F +PL + + I + A + PFD+ A E+ G VE+ + + +
Sbjct: 182 FFIPLFPLFLMFLICILAETNRHPFDLPEAEAELVSGYNVEYSAVGFVLFFLAEYNNIIM 241
Query: 231 ETLFFSNIFLGGAVITTFS-----SPILNTLATLGV-----LLIKQLAVLFVAILISTIF 280
+ F + +FLGG + +S IL + + +K + V+ ++I T
Sbjct: 242 MSAFTNILFLGGWNVPFYSFWFFGDGILRNIFESYLWPSLFFSLKTILVMIFFVIIRTAL 301
Query: 281 PRFTIDQAAKFYWK 294
PR+ DQ + WK
Sbjct: 302 PRYRYDQLMRLGWK 315
>gi|6137789 NADH dehydrogensae subunit 1 [Metridium senile]
>gi|3122451|sp|Q37556|NU1M_METSE NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431940|pir||T11890 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - sea
anemone (Metridium senile) mitochondrion
>gi|1353406|gb|AAC47100.1| (U36784) NADH dehydrogenase
subunit 1 [Metridium senile] >gi|2920991|gb|AAC04636.1|
(AF000023) NADH dehydrogensae subunit 1 [Metridium
senile]
Length = 334
Score = 81.5 bits (198), Expect = 1e-14
Identities = 80/317 (25%), Positives = 136/317 (42%), Gaps = 19/317 (5%)
Query: 5 IVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKEN 57
I+ ILI++ V ++ + RKV + R GP + QP+ D IKLF K+
Sbjct: 15 IILKILIIVIPLLVAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPLADGIKLFTKELV 74
Query: 58 VTHGV---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFA 113
+ H I+ V + ++A IP V+ IL T + I + I+ +
Sbjct: 75 IPHYANLFIYVAAPVLSFTLALIAWGVIPYDKGVVISDLKIGILFTLAVSSISVYAILMS 134
Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHL 173
+S + YA +GA RA +++ +V +G I+ + G+ + EIV+AQ W F
Sbjct: 135 GWASQSKYAFLGAIRAAAQMISYEVSIGLIIITVILCVGSLNITEIVLAQSSGIW--FFF 192
Query: 174 PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETL 233
PL A+ + A + PFD+ E+ G VE+ + + + +
Sbjct: 193 PLFPVAMMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSC 252
Query: 234 FFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
+ +FLGG + SPI+ +K ++ + I + FPR DQ W
Sbjct: 253 LTTILFLGG-----WLSPIVFFKGGPAWFGLKTSFIILLFIWVRASFPRMRYDQLMALLW 307
Query: 294 K-WPTIIAALGAILASL 309
K + + A ++ASL
Sbjct: 308 KSYLPLSLAFVVLVASL 324
>emb|CAA75485.1| (Y15186) NADH dehydrogenase subunit 1 [Myxine glutinosa]
Length = 317
Score = 81.5 bits (198), Expect = 1e-14
Identities = 81/305 (26%), Positives = 142/305 (46%), Gaps = 26/305 (8%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
M ++I + + ++ V F+ + I RKV + R GP I QP D IKLF K
Sbjct: 1 MSQIISSLLTFVMILIAVAFLTL-IERKVLGYMQLRKGPNIVGPFGLLQPFADGIKLFIK 59
Query: 55 KE-NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLIL-ITFLLEIPMLGI-- 110
+ ++ IF F + AL ++ +++I S+ + A D+ L + F+L I L +
Sbjct: 60 EPLQPSYASIFLFILAPALAISLALILWI---SLPLPLALSDMNLGLMFILAISSLSVYS 116
Query: 111 -MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
+ + +S + YA +GA RA+ ++ +V LG IVAL G F ++ + Q W
Sbjct: 117 LLTSGWASNSKYALMGALRAVAQTISYEVTLGLMIVALTILSGGFD-LKLFIDLQNKIWL 175
Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
+F P+ + + I A + PFD+ E+ G VEF G + + +
Sbjct: 176 LF--PMWPIFLMWFISTLAETNRSPFDLTEGESELVSGFNVEFSGGLFALF----FLAEY 229
Query: 230 AETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAA 289
A LF +++ V+ S L++L + +K + ++F+ + + +PRF DQ
Sbjct: 230 ANILFMNSL----TVVLFMGSSNLSSLYFSASMTMKTMFLIFLFLWVRASYPRFRYDQLM 285
Query: 290 KFYWK 294
WK
Sbjct: 286 HLMWK 290
>gi|5835555 NADH dehydrogenase subunit 1 [Ovis aries]
>gi|6093557|sp|O78747|NU1M_SHEEP NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431945|pir||T11050 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - sheep
mitochondrion >gi|3366623|gb|AAD10096.1| (AF010406) NADH
dehydrogenase subunit 1 [Ovis aries]
Length = 318
Score = 81.5 bits (198), Expect = 1e-14
Identities = 77/302 (25%), Positives = 132/302 (43%), Gaps = 21/302 (6%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
M+ V+ I ILL F+ + RKV + R GP + QPI D IKLF K
Sbjct: 3 MINVLTLIIPILLAVAFLTL----VERKVLGYMQFRKGPNVVGPYGLLQPIADAIKLFIK 58
Query: 55 KE-NVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMF 112
+ I F + L T+ M+IPL ++ ++ + + + + I++
Sbjct: 59 EPLRPATSSISMFILAPILALTLALTMWIPLPMPYPLINMNLGVLFMLAMSSLAVYSILW 118
Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFH 172
+ +S + YA IGA RA+ ++ +V L ++++ G+F+ +++ Q+ W IF
Sbjct: 119 SGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLIITQE-QVWLIF- 176
Query: 173 LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAET 232
P A+ + I A + PFD+ E+ G VE+ + + +
Sbjct: 177 -PAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMN 235
Query: 233 LFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFY 292
+F + +FLG F +P + L T+ IK L + + I +PRF DQ
Sbjct: 236 IFTTTLFLG-----AFHNPYMPELYTIN-FTIKSLLLSITFLWIRASYPRFRYDQLMHLL 289
Query: 293 WK 294
WK
Sbjct: 290 WK 291
>gb|AAF97804.1|AF281148_8 (AF281148) NADH dehydrogenase I subunit H [Pseudomonas fluorescens]
Length = 331
Score = 81.5 bits (198), Expect = 1e-14
Identities = 77/307 (25%), Positives = 137/307 (44%), Gaps = 20/307 (6%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
++ ++ AI+ILL G + + R++ R GP ++Q D IK+F K
Sbjct: 11 VILTVLKAIVILLAVVVAGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMIKMFFK 70
Query: 55 KE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGI 110
++ VIF V A+ A ++A IP+ + +L F + + + +
Sbjct: 71 EDWTPPFADKVIFTLAPVVAMSALLIAFAIIPITPTWGVADLNIGLLFFFAMAGLSVYPV 130
Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
+FA SS N +A +G+ RA ++ +V +G +++ + G+F+ +IV Q + W
Sbjct: 131 LFAGWSSNNKFALLGSLRASAQTVSYEVFMGLSLMGIVIQAGSFNMRDIVEYQAQNLW-- 188
Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
F +P + I A+ + PFD A E++ G +E+ G G+ V IG+
Sbjct: 189 FIIPQFFGFCTFFIAGVAVTHRHPFDQPEAEQELADGYHIEYAGMKWGMFFVGEYIGIIL 248
Query: 231 ETLFFSNIFLGGAVITTFSSP--ILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQA 288
+ +F GG + P IL L+ + L K + + +L + PR DQ
Sbjct: 249 ISALLVTLFFGG-----WHGPFDILPQLSFVWFAL-KTAFFIMLFVLCAPRTPRPRYDQV 302
Query: 289 AKFYWKW 295
F WK+
Sbjct: 303 MDFSWKF 309
>gi|5834858 NADH dehydrogenase subunit 1 [Phoca vitulina]
>gi|128649|sp|Q00505|NU1M_PHOVI NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|284542|pir||S26151 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - harbor
seal mitochondrion >gi|13432|emb|CAA45257.1| (X63726)
NADH dehydrogenase subunit 1 [Phoca vitulina]
Length = 318
Score = 81.1 bits (197), Expect = 2e-14
Identities = 74/303 (24%), Positives = 133/303 (43%), Gaps = 23/303 (7%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
M+ +I I ILL F+ + RKV + R GP I QPI D +KLF K
Sbjct: 3 MINIISLIIPILLAVAFLTL----VERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTK 58
Query: 55 ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
+ + +F + AL + + +P+ + G L ++ + + + I+
Sbjct: 59 EPLRPLTSSTTMFIMAPILALALALTMWVPLPMPYPLINMNLGVLFMLA-MSSLAVYSIL 117
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
++ +S + YA IGA RA+ ++ +V L ++++ G+F+ +++ Q+ H W IF
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLIITQE-HLWLIF 176
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
P A+ + I A + PFD+ E+ G VE+ + + +
Sbjct: 177 --PAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIIMM 234
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
+F + +F G F +P + L + +K LA+ + + I +PRF DQ
Sbjct: 235 NIFTTLLFFG-----AFHNPYMPELYVIN-FTVKTLALTILFLWIRASYPRFRYDQLMHL 288
Query: 292 YWK 294
WK
Sbjct: 289 LWK 291
>gi|5834898 NADH dehydrogenase subunit 1 [Strongylocentrotus purpuratus]
>gi|128654|sp|P15548|NU1M_STRPU NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|85385|pir||S01499 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - sea
urchin (Strongylocentrotus purpuratus) mitochondrion
>gi|13665|emb|CAA31151.1| (X12631) NADH dehydrogenase
(ND1) subunit 1 [Strongylocentrotus purpuratus]
Length = 322
Score = 81.1 bits (197), Expect = 2e-14
Identities = 83/319 (26%), Positives = 142/319 (44%), Gaps = 27/319 (8%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
+L +I I ILL F+ + RKV + R GP + QP D +K+F K
Sbjct: 7 ILELISFLIPILLSVAFLTL----VERKVLGYMQFRNGPNVVGPFGLLQPFADGMKVFIK 62
Query: 55 KENV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
+E + +F F + L +L F+P+ + L L+L+ L + + I+
Sbjct: 63 EELKPVNSSPYLFFFSPLLFLALALLLWNFMPVHT-PTLDLQLSLLLVLGLSSLSVYAIL 121
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
+ +S + Y+ +GA RA+ ++ ++ L +++L + +F+ I+ Q+ +S+
Sbjct: 122 GSGWASNSKYSLLGAIRAVAQTISYEISLALILLSLIIFSSSFNLTYIMNTQEFSWFSLS 181
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
LPL + + A + PFD+ EI G VE+ G + + +
Sbjct: 182 CLPLFYI---WFVSTLAETNRAPFDLTEGESEIVSGYNVEYAGGPFVLFFIAEYANIILM 238
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIK-QLAVLFVAILISTIFPRFTIDQAAK 290
F +FLGG SP LN L + ++++ + LF + + +PRF DQ
Sbjct: 239 NYFSVVLFLGG------PSP-LNNLFPISIIIVGIKTTFLFSVLWVRAAYPRFRYDQLMF 291
Query: 291 FYWK--WPTIIAALGAILA 307
WK P I AL AILA
Sbjct: 292 LTWKSYLPLSIGALCAILA 310
>gi|5835010 NADH dehydrogenase subunit 1 [Halichoerus grypus]
>gi|585590|sp|P38598|NU1M_HALGR NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|543077|pir||S41835 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - gray
seal mitochondrion >gi|414758|emb|CAA50877.1| (X72004)
NADH-ubiquinone oxidoreductase subunit 1 [Halichoerus
grypus]
Length = 318
Score = 80.4 bits (195), Expect = 3e-14
Identities = 75/304 (24%), Positives = 135/304 (43%), Gaps = 25/304 (8%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
M+ +I I ILL F+ + RKV + R GP I QPI D +KLF K
Sbjct: 3 MINIISLIIPILLAVAFLTL----VERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTK 58
Query: 55 ---KENVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGI 110
+ + +F + AL T+ M++PL ++ ++ + + + + I
Sbjct: 59 EPLRPLTSSTTMFIMAPILAL--TLALTMWVPLPMPYPLINMNLGVLFMLAMSSLAVYSI 116
Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
+++ +S + YA IGA RA+ ++ +V L ++++ G+F+ +++ Q+ H W I
Sbjct: 117 LWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLIITQE-HLWLI 175
Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
F P A+ + I A + PFD+ E+ G VE+ + + +
Sbjct: 176 F--PAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIIM 233
Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
+F + +F G F +P + L + +K LA+ + + I +PRF DQ
Sbjct: 234 MNIFTTLLFFG-----AFHNPYMPELYVVN-FTVKTLALTILFLWIRASYPRFRYDQLMH 287
Query: 291 FYWK 294
WK
Sbjct: 288 LLWK 291
>gi|5835835 NADH dehydrogenase subunit 1 [Pongo pygmaeus abelii]
>gi|2829775|sp|P92690|NU1M_PONPA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|1743295|emb|CAA66283.1|
(X97707) NADH1 [Pongo pygmaeus abelii]
Length = 318
Score = 80.4 bits (195), Expect = 3e-14
Identities = 76/298 (25%), Positives = 131/298 (43%), Gaps = 24/298 (8%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPI------YQPIIDTIKLFGKKE-NVTH 60
+L+L+ + + F+ + RK+ R GP I QP D +KLF K+ +
Sbjct: 6 LLLLIMSILIAMAFLMLTERKILGHTQLRKGPNIVGPYGLLQPFADALKLFTKEPLKPST 65
Query: 61 GVIFDFGIVFALGATILALMFIPLG-SISVLRAYGDLILITFLLEIPMLGIMFAAMSSGN 119
I + I AL TI L++ PL I ++ L+ I + + I+++ +S +
Sbjct: 66 STITLYIISPALALTIALLLWTPLPMPIPLINLNLGLLFILAASSLTVYSILWSGWASNS 125
Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
YA IGA RA+ ++ ++ L ++++ G+F+ ++ Q+ H W + LP A
Sbjct: 126 NYALIGALRAVAQTISYEITLALILLSVLLMSGSFNLSALITTQE-HSWLL--LPSWPLA 182
Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
+ + I A + PFD+ E+ G E+ + + + + IF
Sbjct: 183 LMWFISTLAETNRAPFDLTEGESELVSGFNTEYAAGPFALFFMAEYTNIILMNALTTMIF 242
Query: 240 LGGAVITTF---SSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
LG TTF S + TL T+ LL+ L + I + +PRF DQ WK
Sbjct: 243 LG----TTFNIHSPELYTTLFTIKTLLLTSL-----FLWIRSTYPRFRYDQLMHLLWK 291
>gi|5835693 NADH dehydrogenase subunit 1 [Ixodes hexagonus]
>gi|7431928|pir||T11272 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - hardbacked tick (Ixodes
hexagonus) mitochondrion >gi|4164555|gb|AAD05516.1|
(AF081828) NADH dehydrogenase 1 [Ixodes hexagonus]
Length = 313
Score = 80.4 bits (195), Expect = 3e-14
Identities = 69/295 (23%), Positives = 130/295 (43%), Gaps = 30/295 (10%)
Query: 10 LILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFGKKENVTHGV 62
+ L+ V F ++ RK+ +H R GP ++QP D IKLF K+ N+ +
Sbjct: 8 IFLIMCVLVSVAFFTLLERKILGYIHIRKGPNKVGFIGVFQPFSDAIKLFSKEMNMMFYI 67
Query: 63 IFDFGIVFALGATILALMFIPLGS---ISVLRAYGDLILITFLLEIPMLGIMFAAMSSGN 119
F I+ ++ IL + L S +L YG ++ + + + + I+F SS +
Sbjct: 68 NMIFYIISSVVLLILMMSLWFLFSWDYNQILIEYG-MVFLLCISSLSVYVILFGGWSSNS 126
Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
YA +G+ R +++ +V L ++++ + G++S +I M Q + + LL
Sbjct: 127 KYALLGSYRGGAQVISYEVSLSLWLISVIFFCGSYSIMKIEMFQNLWIMLVGFFNLL--- 183
Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
I + + A + PFD+ E+ G +E+G +L + + ++ +N+F
Sbjct: 184 IVWMVSCFAETNRSPFDLSEGESELVSGFNIEYGSWNFAVLFIAEYGNIILISVITTNLF 243
Query: 240 LGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
G +GV++I L V+ + ILI R+ D+ WK
Sbjct: 244 FG----------------DMGVMMINVLVVMVLFILIRGTLVRYRYDKLMMLAWK 282
>sp|P42032|NUOH_RHOCA NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
8) (NUO8) >gi|282170|pir||S22368 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 1 - Rhodobacter
capsulatus >gi|3282571|gb|AAC24997.1| (AF029365) NUOH
[Rhodobacter capsulatus] >gi|1586520|prf||2204231A NADH
ubiquinone oxidoreductase [Rhodobacter capsulatus]
Length = 345
Score = 80.0 bits (194), Expect = 3e-14
Identities = 77/322 (23%), Positives = 136/322 (41%), Gaps = 35/322 (10%)
Query: 9 ILILLYATFVGFMFMGII------RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE 56
IL+ + F+ +G++ RK+ A V R GP + Q + D K K+
Sbjct: 14 ILLAQGLGIIAFVMIGLLLLVWGDRKIWAAVQMRKGPNVVGAFGLLQSVADAAKYVFKEI 73
Query: 57 NVTHGV---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMF 112
V GV ++ + +L +LA + +P V+ +L F + + + G++
Sbjct: 74 VVPAGVDKPVYFLAPMLSLVLALLAWVVVPFNEGWVMADINVAVLFVFAVSSLEVYGVIM 133
Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ----VHGW 168
+S + Y +G+ R+ +++ +V +G IV + G+ + IV AQ+ + W
Sbjct: 134 GGWASNSKYPFLGSLRSAAQMISYEVSMGLIIVGVIISTGSMNLSAIVEAQRGDFGLLNW 193
Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
+ LP L + I A + PFD+ A E+ G MVE+ + I +
Sbjct: 194 --YWLPHLPMVALFFISALAETNRPPFDLPEAESELVAGFMVEYSSTPYLLFMAGEYIAV 251
Query: 229 FAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQA 288
+ S +F GG + SPI + ++ K AV FV ++ I PR+ DQ
Sbjct: 252 WLMCALTSVLFFGG-----WLSPIPGVPDGVLWMVAKMAAVFFVFAMVKAIVPRYRYDQL 306
Query: 289 AKFYWK--------WPTIIAAL 302
+ WK W ++A L
Sbjct: 307 MRIGWKVFLPLSLAWVVVVAFL 328
>gi|5835086 NADH dehydrogenase subunit 1 [Asterina pectinifera]
>gi|1542806|dbj|BAA03879.1| (D16387) NADH-dehydrogenase
subunit 1 [Asterina pectinifera]
Length = 326
Score = 80.0 bits (194), Expect = 3e-14
Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 22/300 (7%)
Query: 6 VNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK---KE 56
VN+IL ++ + + RKV + R GP I QPI D KL K K
Sbjct: 8 VNSILFIVPVLLAVALLTLVERKVLGYMQLRKGPNIVGPFGLLQPIADGFKLLIKETLKP 67
Query: 57 NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMS 116
+ +F F V LG ++ IP+ SV+ L+LI L + + ++ + S
Sbjct: 68 SNASPYLFFFSPVLFLGIALVLWSVIPV-KYSVVSVNLSLMLIIGLSSLSVYSLLGSGWS 126
Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
S + Y+ +GA RA+ ++ ++ LG ++ + + G F+ E++ + Q W +F L
Sbjct: 127 SNSNYSFLGAVRAVAQTVSYEISLGLILLGVVLFAGGFNV-EVIESSQSWSWLMFSCFPL 185
Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
A + + A + PFD+ EI G VE+ G + + + L
Sbjct: 186 FAI--WFVSTLAETNRAPFDLTEGESEIVSGYNVEYAGGPFAMFFIAEYANIIFINLLSV 243
Query: 237 NIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL--ISTIFPRFTIDQAAKFYWK 294
+FLGG SSP + + VL++ A + V + + +PRF DQ WK
Sbjct: 244 LLFLGG------SSP-MGEFFPVNVLVVSLKAGVLVLLFLWVRASYPRFRYDQLMYLTWK 296
>sp|P23650|NU1M_ASTPE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|2133767|pir||S70596 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
starfish (Asterina pectinifera) mitochondrion
Length = 326
Score = 80.0 bits (194), Expect = 3e-14
Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 22/300 (7%)
Query: 6 VNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK---KE 56
VN+IL ++ + + RKV + R GP I QPI D KL K K
Sbjct: 8 VNSILFIVPVLLAVALLTLVERKVLGYMQLRKGPNIVGPFGLLQPIADGFKLLIKETLKP 67
Query: 57 NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMS 116
+ +F F V LG ++ IP+ SV+ L+LI L + + ++ + S
Sbjct: 68 SNASPYLFFFSPVLFLGIALVLWSVIPV-KYSVVSVNLSLMLIIGLSSLSVYSLLGSGWS 126
Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
S + Y+ +GA RA+ ++ ++ LG ++ + + G F+ E++ + Q W +F L
Sbjct: 127 SNSNYSFLGAVRAVAQTVSYEISLGLILLGVVLFAGGFNV-EVIESSQSWSWLMFSCFPL 185
Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
A + + A + PFD+ EI G VE+ G + + + L
Sbjct: 186 FAI--WFVSTLAETNRAPFDLTEGESEIVSGYNVEYAGGPFAMFFIAEYANIIFINLLSV 243
Query: 237 NIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL--ISTIFPRFTIDQAAKFYWK 294
+FLGG SSP + + VL++ A + V + + +PRF DQ WK
Sbjct: 244 LLFLGG------SSP-MGEFFPVNVLVVSLKAGVLVLLFLWVRASYPRFRYDQLMYLTWK 296
>sp|O21077|NU1M_MYXGL NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|7431965|pir||T13816 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Atlantic hagfish mitochondrion
>gi|2340020|emb|CAA70716.1| (Y09527) NADH dehydrogenase
subunit 1 [Myxine glutinosa]
Length = 318
Score = 80.0 bits (194), Expect = 3e-14
Identities = 80/303 (26%), Positives = 141/303 (46%), Gaps = 26/303 (8%)
Query: 3 RVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKE 56
++I + + ++ V F+ + I RKV + R GP I QP D IKLF K+
Sbjct: 4 QIISSFLTFVMILIAVAFLTL-IERKVLGYMQLRKGPNIVGPFGLLQPFADGIKLFIKEP 62
Query: 57 -NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLIL-ITFLLEIPMLGI---M 111
++ IF F + AL ++ +++I S+ + A D+ L + F+L I L + +
Sbjct: 63 LQPSYASIFLFILAPALAISLALILWI---SLPLPLALSDMNLGLMFILAISSLSVYSLL 119
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
+ +S + YA +GA RA+ ++ +V LG IVAL G F ++ + Q W +F
Sbjct: 120 TSGWASNSKYALMGALRAVAQTISYEVTLGLMIVALTILSGGFD-LKLFIDLQNKIWLLF 178
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
P+ + + I A + PFD+ E+ G VEF G + + +A
Sbjct: 179 --PMWPIFLMWFISTLAETNRSPFDLTEGESELVSGFNVEFSGGLFALF----FLAEYAN 232
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
LF +++ V+ S L++L + +K + ++F+ + + +PRF DQ
Sbjct: 233 ILFMNSL----TVVLFMGSSNLSSLYFSASMTMKTMFLIFLFLWVRASYPRFRYDQLMHL 288
Query: 292 YWK 294
WK
Sbjct: 289 MWK 291
>pir||T34617 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 SC10A7.14c
[similarity] - Streptomyces coelicolor
>gi|5042270|emb|CAB44524.1| (AL078618) nuoH, NADH
dehydrogenase subunit [Streptomyces coelicolor]
Length = 467
Score = 80.0 bits (194), Expect = 3e-14
Identities = 78/336 (23%), Positives = 142/336 (42%), Gaps = 37/336 (11%)
Query: 4 VIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQP------IIDTIKLFGKKEN 57
V++ A+ + + RKV A + RIGP + P + D IKL K++
Sbjct: 21 VVIKAVFCFAFLMVTVLFSIVWERKVVAWMQLRIGPNRHGPWGMLQSLADGIKLMLKEDV 80
Query: 58 VTHGV---IFDFGIVFALGATILALMFIPLGSI-SVLRAYGD------------LILITF 101
+ ++ + A +A+ IP G + + +G ++ I
Sbjct: 81 IVKRADKAVYVLAPIVAAIPAFMAIAVIPFGPAGNEVSIFGHRTAMQLTDLPIAMLFILA 140
Query: 102 LLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVM 161
+ + + GI+ A SSG+ Y +G R+ +++ ++ +G A ++ Y G+ ST EIV
Sbjct: 141 VASVGIYGIVLAGWSSGSTYPLLGGLRSCAQMISYEIAMGAAFASVFLYSGSMSTSEIV- 199
Query: 162 AQQVHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQ 221
AQQ W I LP ++ I Y + + + PFD+ + G++ G E+ +
Sbjct: 200 AQQDDRWYIVLLP--VSFILYIVTMVGETNRAPFDMPESEGDLVGGFNTEYSSIKFAMFM 257
Query: 222 VQHAIGLFAETLFFSNIFLGG----AVITTFSSPILNTLATLGVLLIKQLAVLFVAILIS 277
+ + + + + +FLGG I+TF + L ++K +LF I +
Sbjct: 258 LAEYVNMVTVSAVATTLFLGGWRAPWPISTFWEGANHGWWPLLWFVVKVQLLLFFFIWLR 317
Query: 278 TIFPRFTIDQAAKFYWK--------WPTIIAALGAI 305
PR DQ K WK W ++A + A+
Sbjct: 318 GTLPRVRYDQLMKLGWKVLIPVSLVWLMLVATVRAL 353
>gb|AAF66632.1| (AF143002) NADH dehydrogenase subunit 1 [Hipposideros diadema]
Length = 318
Score = 80.0 bits (194), Expect = 3e-14
Identities = 72/303 (23%), Positives = 136/303 (44%), Gaps = 23/303 (7%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
M+ +++ + ILL F+ + RKV + R GP + QPI D IKLF K
Sbjct: 3 MINLLLMIVPILLAVAFLTL----VERKVLGYMQLRKGPNVVGPYGLLQPIADAIKLFTK 58
Query: 55 K--ENVTHGV-IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
+ +T + +F + AL + +P+ + G L ++ + + + I+
Sbjct: 59 EPLRPLTSSISMFIIAPILALALALTMWTPLPMPYPLINMNLGVLFMLA-MSSLAVYSIL 117
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
++ +S + YA IGA RA+ ++ +V L ++++ G+F+ ++ Q+ H W I
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLLNGSFTLPTLITTQE-HMWLI- 175
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
+P A+ + I A + PFD+ E+ G VE+ G + + +
Sbjct: 176 -IPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMM 234
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
+F + +FLG F +P++ L T+ + K + + + + +PRF DQ
Sbjct: 235 NIFTTILFLG-----AFHNPLMPELYTIN-FVTKSMLLTISFLWVRASYPRFRYDQLMHL 288
Query: 292 YWK 294
WK
Sbjct: 289 LWK 291
>gi|5835108 NADH dehydrogenase subunit 1 [Equus caballus]
>gi|1352541|sp|P48652|NU1M_HORSE NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431939|pir||T11857 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - horse
mitochondrion >gi|577572|emb|CAA56079.1| (X79547) NADH
dehydrogenase [Equus caballus]
Length = 318
Score = 79.6 bits (193), Expect = 4e-14
Identities = 74/296 (25%), Positives = 134/296 (45%), Gaps = 20/296 (6%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKK--ENVT 59
+L+L+ + F+ ++ RKV + R GP I QPI D +KLF K+ + +T
Sbjct: 6 VLLLIVPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADALKLFIKEPLQPLT 65
Query: 60 HGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
F I L T+ M+IPL ++ ++ + + + + I+++ +S
Sbjct: 66 SSTSM-FIIAPILALTLALTMWIPLPMPYPLINMNLGILFMLAMSSLAVYSILWSGWASN 124
Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
+ YA IGA RA+ ++ +V L ++++ G+F+ +++ Q+ + W IF P
Sbjct: 125 SKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFTLSTLIITQE-YLWLIF--PSWPL 181
Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
A+ + I A + PFD+ E+ G VE+ + + + +F + +
Sbjct: 182 AMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNIFTTTL 241
Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
FLG F +P L L ++ IK L + + I +PRF DQ WK
Sbjct: 242 FLG-----AFHNPYLPELYSIN-FTIKALLLTCSFLWIRASYPRFRYDQLMHLLWK 291
>gi|5835346 NADH dehydrogenase subunit 1 [Equus asinus]
>gi|3122445|sp|P92475|NU1M_EQUAS NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431955|pir||T11363 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - donkey
mitochondrion >gi|1805747|emb|CAA66014.1| (X97337) NADH
dehydrogenase subunit 1 [Equus asinus]
Length = 318
Score = 79.6 bits (193), Expect = 4e-14
Identities = 77/303 (25%), Positives = 136/303 (44%), Gaps = 23/303 (7%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
M+ V++ I ILL F+ + RK+ + R GP I QPI D +KLF K
Sbjct: 3 MINVLLLIIPILLAVAFLTL----VERKILGYMQLRKGPNIVGPYGLLQPIADALKLFIK 58
Query: 55 K--ENVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIM 111
+ + +T F I L T+ M+IPL ++ ++ + + + + I+
Sbjct: 59 EPLQPLTSSTSM-FIIAPILALTLALTMWIPLPMPYPLINMNLGILFMLAMSSLAVYSIL 117
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
++ +S + YA IGA RA+ ++ +V L ++++ G+F+ +++ Q+ + W IF
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFTLSTLIITQE-YLWLIF 176
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
P A+ + I A + PFD+ E+ G VE+ + + +
Sbjct: 177 --PSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMM 234
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
+F + +FLG F SP L L ++ +K L + + I +PRF DQ
Sbjct: 235 NIFTTTLFLG-----AFHSPYLPELYSIN-FTMKTLLLTCSFLWIRASYPRFRYDQLMHL 288
Query: 292 YWK 294
WK
Sbjct: 289 LWK 291
>gi|11466505 NADH dehydrogenase, subunit 1 [Reclinomonas americana]
>gi|7431897|pir||S78136 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Reclinomonas americana (ATCC
50394) mitochondrion >gi|2258335|gb|AAD11869.1|
(AF007261) NADH dehydrogenase, subunit 1 [Reclinomonas
americana]
Length = 333
Score = 79.6 bits (193), Expect = 4e-14
Identities = 73/303 (24%), Positives = 137/303 (45%), Gaps = 17/303 (5%)
Query: 4 VIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE 56
+I+ IL L+ + ++ ++ RKV A + +R GP + QP+ D +KL K+
Sbjct: 6 IILGKILGLVLPLLICVAYLTLLERKVIAAMQQRKGPNVVGVFGLLQPLADGLKLLLKET 65
Query: 57 NV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMF 112
V + IF + ++++ IP+ V+ L+ I + + + GI+
Sbjct: 66 IVPTRANSAIFILAPILTFMLSLVSWAVIPIDDGMVIADLNIGLLYILSVSSLGVYGIIT 125
Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFH 172
+ SS + YA +G+ R+ +++ +V +G I+ + G+ + +IV Q+ W I
Sbjct: 126 SGWSSNSKYAFLGSLRSAAQMVSYEVSIGLIIITVLMCAGSLNLTQIVRCQESM-WYI-- 182
Query: 173 LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAET 232
+PL + + I + A + PFD+ A E+ G VE+ + + +
Sbjct: 183 IPLFPLFVMFFISILAETNRSPFDLPEAEAELVAGYNVEYSAMGFALFFLGEYANMILMC 242
Query: 233 LFFSNIFLGGAVITTFSSPILNTLATLGVLL-IKQLAVLFVAILISTIFPRFTIDQAAKF 291
+ +FLGG + P TL + +K + +LFV I + FPR+ DQ +
Sbjct: 243 SMCTILFLGGWLAPLNILPF--TLIPGSIWFGLKVVFLLFVFIWVRATFPRYRYDQLMRL 300
Query: 292 YWK 294
WK
Sbjct: 301 GWK 303
>gi|6691423 NADH dehydrogenase subunit 1 [Lampetra fluviatilis]
>gi|3122440|sp|O21069|NU1M_LAMFL NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431967|pir||T13811 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - river
lamprey mitochondrion >gi|2340017|emb|CAA70719.1|
(Y09528) NADH dehydrogenase subunit 1 [Lampetra
fluviatilis] >gi|6523330|emb|CAB62214.1| (Y18683) NADH
dehydrogenase subunit 1 [Lampetra fluviatilis]
Length = 321
Score = 79.6 bits (193), Expect = 4e-14
Identities = 82/297 (27%), Positives = 132/297 (43%), Gaps = 24/297 (8%)
Query: 9 ILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NVT 59
IL+L+ V F+ M + RK + R GP + QPI D +KLF K+
Sbjct: 10 ILVLMVLLAVAFLTM-VERKTLGYMQLRKGPNVVGFMGLLQPIADGVKLFLKEPVWPTAA 68
Query: 60 HGVIFDFGIVFALGATILALMFIPLG-SISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
+F + AL + MFIP+ SIS + L++I + + + + + +S
Sbjct: 69 SPALFIAAPIMALTLALSLWMFIPMPQSISTINL--TLLVILAISSLSVYASLGSGWASN 126
Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
+ YA IGA RA+ ++ +V LG ++ L G FS + Q+ H W F L
Sbjct: 127 SKYALIGALRAVAQTISYEVSLGLILLCLIILTGGFSLQAFIYTQE-HTW--FLLSSWPL 183
Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFAETLFFSN 237
A + + A + PFD+ E+ G VE+ GG + +++ LF TL +
Sbjct: 184 AAMWFVSTLAETNRTPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNILFMNTLT-AI 242
Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+FLG LN L + V++ K ++ + + I +PRF DQ WK
Sbjct: 243 MFLG-----PLGPNNLNILPIINVMM-KATPLIILFLWIRASYPRFRYDQLMHLMWK 293
>gi|5835639 NADH dehydrogenase subunit 1 [Papio hamadryas]
>gi|6685702|sp|Q9ZXY4|NU1M_PAPHA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7520025|pir||T11506 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - baboon
mitochondrion (fragment) >gi|4049476|emb|CAA76994.1|
(Y18001) NADH dehydrogenase subunit 1 [Papio hamadryas]
Length = 318
Score = 79.6 bits (193), Expect = 4e-14
Identities = 74/297 (24%), Positives = 133/297 (43%), Gaps = 22/297 (7%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK---KENV 58
+L+L+ +T F+ ++ RK+ + R GP I QP D +KLF K K +
Sbjct: 6 LLLLIMSTLAAMAFLTLVERKLLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPST 65
Query: 59 THGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSS 117
+ +++ AL +I L++ PL + L + L+ I + + I+++ +S
Sbjct: 66 SSTILYITAP--ALAFSIALLLWTPLPMPNPLINFNLGLLFILATSSLTVYSILWSGWAS 123
Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
+ YA IGA RA+ +++ +V L ++++ G+F+ ++ Q+ H W I LP
Sbjct: 124 NSNYALIGALRAVAQMISYEVTLSIILLSILLTSGSFNLNMLITTQE-HLWLI--LPSWP 180
Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
A+ + A + PFD+M E+ G +E+ + + + + +
Sbjct: 181 LAMMWFTSTLAETNRTPFDLMEGESELVSGFNIEYSAGPFALFFMAEYMNIIMMNALTTT 240
Query: 238 IFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
IFL G T S + T T+ LL+ L + I +PRF DQ WK
Sbjct: 241 IFL-GTFYPTHSPELFTTSFTIKTLLLTSL-----FLWIRAAYPRFRYDQLMHLLWK 291
>gi|5835332 NADH dehydrogenase subunit 1 [Rhinoceros unicornis]
>gi|2499234|sp|Q96189|NU1M_RHIUN NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431950|pir||T11247 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
greater Indian rhinoceros mitochondrion
>gi|1666194|emb|CAA66001.1| (X97336) NADH subunit 1
[Rhinoceros unicornis]
Length = 318
Score = 79.2 bits (192), Expect = 6e-14
Identities = 73/296 (24%), Positives = 130/296 (43%), Gaps = 20/296 (6%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NV 58
IL+L+ + F+ ++ RKV + R GP I QPI D IKLF K+ +
Sbjct: 6 ILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAIKLFTKEPLQPST 65
Query: 59 THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
+ +F + AL + + +P+ + G L ++ + + + I+++ +S
Sbjct: 66 SSTSMFIIAPIMALTLALTMWVPLPMPHPLINMNLGVLFMLA-MSSLAVYSILWSGWASN 124
Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
+ YA IGA RA+ ++ +V L ++++ G+F+ ++ Q+ H W IF P
Sbjct: 125 SKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQE-HLWLIF--PSWPL 181
Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
+ + I A + PFD+ E+ G VE+ + + + F + +
Sbjct: 182 TMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNAFTTIL 241
Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
FLG F +P + L T+ IK L + + I +PRF DQ WK
Sbjct: 242 FLG-----AFHNPYMPELYTVN-FTIKTLLLTISFLWIRASYPRFRYDQLMHLLWK 291
>gi|5834940 NADH dehydrogenase subunit 1 [Bos taurus]
>gi|128632|sp|P03887|NU1M_BOVIN NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|66131|pir||QXBO1M NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - bovine
mitochondrion >gi|12801|emb|CAA23997.1| (V00654) U.R.F.
1 [Bos taurus] >gi|336431|gb|AAB59268.1| (J01394)
protein 1; putative [Bos taurus]
Length = 318
Score = 78.8 bits (191), Expect = 8e-14
Identities = 73/296 (24%), Positives = 131/296 (43%), Gaps = 20/296 (6%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK---KENV 58
IL+L+ + F+ ++ RKV + R GP + QPI D IKLF K +
Sbjct: 6 ILMLIIPILLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADAIKLFIKEPLRPAT 65
Query: 59 THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
+ +F + ALG + + +P+ + G L ++ + + + I+++ +S
Sbjct: 66 SSASMFILAPIMALGLALTMWIPLPMPYPLINMNLGVLFMLA-MSSLAVYSILWSGWASN 124
Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
+ YA IGA RA+ ++ +V L ++++ G+F+ ++ Q+ W I LP
Sbjct: 125 SKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFTLSTLITTQE-QMWLI--LPAWPL 181
Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
A+ + I A + PFD+ E+ G VE+ + + + +F + +
Sbjct: 182 AMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNIFTAIL 241
Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
FLG T +P + L T+ IK L + + I +PRF DQ WK
Sbjct: 242 FLG-----TSHNPHMPELYTIN-FTIKSLLLTMSFLWIRASYPRFRYDQLMHLLWK 291
>gi|5835318 NADH dehydrogenase subunit 1 [Polypterus ornatipinnis]
>gi|2499233|sp|Q96182|NU1M_POLOR NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431934|pir||T11454 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Polypterus ornatipinnis mitochondrion
>gi|1663750|gb|AAC60305.1| (U62532) NADH dehydrogenase
subunit 1 [Polypterus ornatipinnis]
Length = 319
Score = 78.8 bits (191), Expect = 8e-14
Identities = 87/308 (28%), Positives = 137/308 (44%), Gaps = 32/308 (10%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
++ +I+N ++ ++ + RK+ + R GP I QPI D +KLF K
Sbjct: 3 LITLIINPLMYIIPILLAMAFLTLVERKMLGYMQLRKGPNIVGPYGLLQPIADGVKLFIK 62
Query: 55 ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLIL-ITFLLEIPMLG- 109
K + + +F AL T+ +++IPL + A DL L I F+L + L
Sbjct: 63 EPVKPSTSSPTLFLLTPTLAL--TLALILWIPL---PMPLALTDLNLTILFILAVSSLSV 117
Query: 110 --IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
I+ + +S + YA IGA RA+ ++ +V LG I++L + G F+ AQ+
Sbjct: 118 YSILGSGWASNSKYALIGALRAVAQTISYEVTLGLIIISLIMFTGGFTLTTFNTAQEA-V 176
Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
W I LP A + I A + PFD+ E+ G VE+ G A+
Sbjct: 177 WLI--LPAWPLAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGG-------PFALF 227
Query: 228 LFAETLFFSNIFLGGAVIT-TFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
AE ++NI L A+ T F P NTL IK + + + + + +PRF D
Sbjct: 228 FLAE---YTNILLMNALSTILFLGPSFNTLTINLNWAIKTMILASMFLWVRASYPRFRYD 284
Query: 287 QAAKFYWK 294
Q WK
Sbjct: 285 QLMHLVWK 292
>gi|9801571 NADH dehydrogenase subunit 1 [Lama pacos]
>gi|9558344|emb|CAC00502.1| (Y19184) NADH1 [Lama pacos]
Length = 319
Score = 78.8 bits (191), Expect = 8e-14
Identities = 79/298 (26%), Positives = 132/298 (43%), Gaps = 24/298 (8%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-NVTH 60
IL L+ + F+ ++ RKV + R GP + QPI D IKLF K+
Sbjct: 6 ILTLIVPILLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADAIKLFTKEPLRPAT 65
Query: 61 GVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLIL-ITFLLEIPMLG---IMFAAMS 116
I F + L T+ M+IPL S+ + D+ L + F+L + L I+++ +
Sbjct: 66 SSITMFILAPILALTLALTMWIPL---SMPQPLVDMNLGVLFMLAMSSLAVYSILWSGWA 122
Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
S + YA IGA RA+ ++ +V L ++++ G+F+ ++ Q+ H W I +P
Sbjct: 123 SNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQE-HMWMI--IPAW 179
Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
A+ + I A + PFD+ E+ G VE+ + + + F +
Sbjct: 180 PLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFMAEYANIIMMNAFTT 239
Query: 237 NIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+F G F +P + L T +L K L + + I +PRF DQ WK
Sbjct: 240 ILFFG-----AFHNPYMPELYTANFVL-KTLLLTVTFLWIRASYPRFRYDQLMHLLWK 291
>gi|5835477 NADH dehydrogenase subunit 1 [Balanoglossus carnosus]
>gi|7431924|pir||T11127 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - acorn worm mitochondrion
>gi|3065687|gb|AAD11950.1| (AF051097) NADH dehydrogenase
subunit 1 [Balanoglossus carnosus]
Length = 322
Score = 78.4 bits (190), Expect = 1e-13
Identities = 76/305 (24%), Positives = 136/305 (43%), Gaps = 28/305 (9%)
Query: 4 VIVNAILILLYATF-VGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK-- 54
+I++A+++++ V F+ +G RK+ + R GP + QPI D +KLF K
Sbjct: 6 IIIHALILIVPVLLAVAFITLGE-RKIIGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEP 64
Query: 55 -KENVTHGVIFDFGIVFALGATILALMFIPL----GSISVLRAYGDLILITFLLEIPMLG 109
K + +F + AL ++ IPL SI++ +ILI L + +
Sbjct: 65 VKPTTANPQLFILCPILALAIALVLWTPIPLPFQFSSINL-----SIILILALSSLAVYS 119
Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
I+ + SS + YA IG+ RA+ ++ +V LG ++ + G+F+ IV +Q +S
Sbjct: 120 ILGSGWSSNSKYALIGSIRAVAQTISYEVSLGLIVLCVVILAGSFNLSTIVDSQD---FS 176
Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
F L A + + A + PFD+ E+ G VE+ G + + +
Sbjct: 177 WFILTCTPIAFIWYVSTLAETNRTPFDLTEGESELVSGFNVEYAGGPFALFFLAEYSNII 236
Query: 230 AETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAA 289
+ + +FLGG IL + A ++ +K + + + + +PRF DQ
Sbjct: 237 FMNVLSTVLFLGGG-----GPSILFSWAQTPIIALKATFLSLLFLWVRASYPRFRYDQLM 291
Query: 290 KFYWK 294
WK
Sbjct: 292 HLAWK 296
>gi|5836073 NADH dehydrogenase subunit 1 [Raja radiata] >gi|7431929|pir||T11287
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Raja radiata mitochondrion >gi|4406270|gb|AAD19929.1|
(AF106038) NADH dehydrogenase subunit 1 [Raja radiata]
Length = 324
Score = 78.4 bits (190), Expect = 1e-13
Identities = 80/307 (26%), Positives = 139/307 (45%), Gaps = 23/307 (7%)
Query: 1 MLRVIVNAI---LILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIK 50
ML+ I+ I L + + F+ ++ RK+ + R GP + QPI D +K
Sbjct: 1 MLKTIITQIIHPLTYIIPVLLATAFLTLVERKILGYMQLRKGPNVVGPYGLLQPIADGLK 60
Query: 51 LFGKKE-NVTHGVIFDFGIVFALGATILALMFIPLG-SISVLRAYGDLILITFLLEIPML 108
LF K+ +H F F T+ LM++PL S+L L+ I + + +
Sbjct: 61 LFTKEPIRPSHSSHFLFLATPTAALTLALLMWMPLPLPHSILNLNLGLLFILAISSLTVY 120
Query: 109 GIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
I+ + +S + YA +GA RA+ ++ +V LG +++L G F+ + Q+ W
Sbjct: 121 TILGSGWASNSKYALMGALRAVAQTISYEVTLGLILLSLVIMAGGFTLHTFNFTQETI-W 179
Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIG 227
+ +P A+ + I A + PFD+ E+ G +E+ GG + L +++
Sbjct: 180 LL--IPAWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNIEYAGGPFALFLLAEYSNI 237
Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
L TL ++ L V S P ++TL+ L+IK + + + I +PRF DQ
Sbjct: 238 LMMNTL---SVILFMGVSYNPSLPQISTLS----LMIKATMLTILFLWIRASYPRFRYDQ 290
Query: 288 AAKFYWK 294
WK
Sbjct: 291 LMHLVWK 297
>gi|5835889 NADH dehydrogenase subunit 1 [Ceratitis capitata]
>gi|5101677|emb|CAB45100.1| (AJ242872) NADH
dehydrogenase (ubiquinone) chain 1 [Ceratitis capitata]
Length = 343
Score = 78.4 bits (190), Expect = 1e-13
Identities = 76/299 (25%), Positives = 133/299 (44%), Gaps = 35/299 (11%)
Query: 10 LILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFGKKEN---VT 59
LIL+ V F+ ++ RKV + R GP I QP D IKLF K++ ++
Sbjct: 11 LILVICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTKEQTYPLLS 70
Query: 60 HGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGI---MFAAMS 116
+ + + F +F+L +++A + IPL ++ + + I F L LG+ M A S
Sbjct: 71 NYISYYFSPIFSLFISLIAWLCIPL----FIKLFSFNLGILFFLCCTSLGVYTVMIAGWS 126
Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
S + YA +G RA+ ++ +V + +++ G+++ + Q + IF P+
Sbjct: 127 SNSNYALLGGLRAVAQTISYEVSMALILLSFVFLIGSYNILDFYYYQSYIWFLIFLFPI- 185
Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFG-GKYLGILQVQHAIGLFAETLFF 235
++ + + A + PFD E+ G +E+ G + I ++A LF LF
Sbjct: 186 --SLVWFCICLAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFMAEYASILFMSMLF- 242
Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
S IFLG + + + +K + FV I + PRF D+ WK
Sbjct: 243 SVIFLGCDLFSL-------------MFYLKLTFISFVFIWVRGTLPRFRYDKLMYLAWK 288
>gi|11386119 NADH dehydrogenase subunit 1 [Pteropus dasymallus]
>gi|11231067|dbj|BAB18172.1| (AB042770) NADH
dehydrogenase subunit 1 [Pteropus dasymallus]
Length = 318
Score = 78.4 bits (190), Expect = 1e-13
Identities = 82/303 (27%), Positives = 136/303 (44%), Gaps = 23/303 (7%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
M+ ++ + ILL F+ I RKV + R GP + QP+ D +KLF K
Sbjct: 3 MINLLTMIVPILLAVAFLTL----IERKVLGYMQLRKGPNVVGPYGLLQPMADALKLFTK 58
Query: 55 KENVTHGVIFDFGIVFALGATILAL-MFIPLGSISVLRAYGDLILITFLLE-IPMLGIMF 112
+ I+ + A LAL M+IPL L +L + + + I++
Sbjct: 59 EPLRPLASSPSMFIIAPIMALTLALTMWIPLPMPHPLINMNLAVLFMLAMSSLAVYSILW 118
Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFH 172
+ +S + YA IGA RA+ ++ +V L ++++ G+FS +++ Q+ H W +
Sbjct: 119 SGWASNSKYALIGAMRAVAQTISYEVTLAIILLSVLLLSGSFSLSTLIITQE-HAWLM-- 175
Query: 173 LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFAE 231
L A+ + I A + PFD+ E+ G VE+ GG + ++A +
Sbjct: 176 LSSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFMAEYANIIMMN 235
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
TL + I GA F +P+ L T+ L+IK L + + I +PRF DQ
Sbjct: 236 TL--TAILFTGA----FHNPLTPELYTIN-LIIKTLLLTVFFLWIRASYPRFRYDQLMHL 288
Query: 292 YWK 294
WK
Sbjct: 289 LWK 291
>gi|5835402 NADH dehydrogenase subunit 1 [Ceratotherium simum]
>gi|3122438|sp|O03850|NU1M_CERSI NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|2052152|emb|CAA69006.1|
(Y07726) NADH-ubiquinone oxidoreductase subunit I
[Ceratotherium simum]
Length = 318
Score = 78.0 bits (189), Expect = 1e-13
Identities = 73/296 (24%), Positives = 130/296 (43%), Gaps = 20/296 (6%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE---NV 58
IL+L+ + F+ ++ RKV + R GP I QPI D IKLF K+ +
Sbjct: 6 ILLLVIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAIKLFTKEPLQPST 65
Query: 59 THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
+ +F + AL + + +P+ + G L ++ + + + I+++ +S
Sbjct: 66 SSTTMFIIAPILALTLALTMWIPLPMPHPLINMNLGVLFMLA-MSSLAVYSILWSGWASN 124
Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
+ YA IGA RA+ ++ +V L ++++ G+F+ ++ Q+ H W IF P
Sbjct: 125 SKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQE-HLWLIF--PSWPL 181
Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
A+ + I A + PFD+ E+ G VE+ + + + F + +
Sbjct: 182 AMMWFISTLAETNRAPFDLAEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNAFTTIL 241
Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
FLG F +P + L T+ K L + + I +PRF DQ WK
Sbjct: 242 FLG-----AFHNPHMPELYTIN-FTTKTLLLTTSFLWIRASYPRFRYDQLMHLLWK 291
>pir||D72620 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PAB1393
[similarity] - Aeropyrum pernix (strain K1)
>gi|5105104|dbj|BAA80418.1| (AP000061) 383aa long
hypothetical NADH dehydrogenase (ubiquinone) chain 1
[Aeropyrum pernix]
Length = 383
Score = 77.6 bits (188), Expect = 2e-13
Identities = 79/320 (24%), Positives = 135/320 (41%), Gaps = 27/320 (8%)
Query: 12 LLYATFVGFMFMGII-----RKVTARVHRRIGPPIYQP--------IIDTIKLFGKKENV 58
LL F G + + I+ RK ARV RRIGP P + D ++ ++ +
Sbjct: 27 LLILGFGGALLIAIVAVWFERKAAARVQRRIGPYWASPRLGGLLHLVADMMRYMFQQVII 86
Query: 59 THGV-IFDFGI--VFALGATILALMFIPLGSISV-------LRAYGDLILITFLLEIPML 108
V F F + + + +IL +PL + L Y L+L + +P +
Sbjct: 87 PRTVDYFPFLVAPIVGMAVSILPFAVVPLTANPSYWPLPPGLMEYS-LLLALAISTLPPI 145
Query: 109 GIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
++ A ++ NP+ +G R +LA ++ +++A A G+F+ EIV AQ W
Sbjct: 146 FLIVAGWAANNPFTIVGGVREAFIILAYELIAILSLLAPAITVGSFNIVEIVQAQGFFKW 205
Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
I P LA +A I + PF+I + E+ GP E+ G + +
Sbjct: 206 FIILNP--LAFLAAVIAIAMSTSAFPFEIPESEPEVVAGPFTEYSGILYALNMGGAYMRR 263
Query: 229 FAETLFFSNIFLGG-AVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
FA +L S + LGG + ++ L V++ K V + ++ R+ +DQ
Sbjct: 264 FAFSLIASLVLLGGWYPVVPGEGVVMGYLLPSLVVVAKAALVTLAISFLRAVYGRYRLDQ 323
Query: 288 AAKFYWKWPTIIAALGAILA 307
A W+ + L +LA
Sbjct: 324 ALDLAWRLVLPLTLLAILLA 343
>gb|AAF61231.1|AF234899_1 (AF234899) NADH dehydrogenase I [Haemulon plumieri]
Length = 324
Score = 77.6 bits (188), Expect = 2e-13
Identities = 79/305 (25%), Positives = 141/305 (45%), Gaps = 26/305 (8%)
Query: 4 VIVNAI--LILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
VIV+ I L L+ + F+ ++ RKV + R GP + QPI D +KLF K
Sbjct: 5 VIVHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64
Query: 55 ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
+ + + ++F + L + +PL S+ ++ ++ I L + + I+
Sbjct: 65 EPVRPSTSSTLLFLLATMLTLSLALTLWAPMPL-SMPMMDLNLGILFILALSNLTVYSIL 123
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
+ +S + YA IGA RA+ + +++V LG + + G F+ + +AQ+ W I
Sbjct: 124 GSGWASNSKYAFIGAMRAVAQMFSVEVSLGLILFGAIIFTGAFTLQTLNVAQE-SVWLI- 181
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFA 230
LP A + + A + PFD+ E+ G VE+ GG + ++A L
Sbjct: 182 -LPAWPLAAMWYVSTFAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL-ISTIFPRFTIDQAA 289
TL + +F+G + +P+ L + +++ + A+L VA L + +PRF DQ
Sbjct: 241 NTL-SATLFMGAS-----HAPLYPELTAINLMI--KAALLSVAFLWVRASYPRFRYDQLM 292
Query: 290 KFYWK 294
WK
Sbjct: 293 HLIWK 297
>gi|5835304 NADH dehydrogenase subunit 1 [Arbacia lixula]
>gi|7431902|pir||T11793 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - sea urchin (Arbacia lixula)
mitochondrion >gi|1480388|emb|CAA56608.1| (X80396) NADH1
[Arbacia lixula]
Length = 323
Score = 77.3 bits (187), Expect = 2e-13
Identities = 77/306 (25%), Positives = 130/306 (42%), Gaps = 21/306 (6%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK---KENV 58
++ L + F+ ++ RKV + R GP + QP D +KLF K K +
Sbjct: 10 LITFLVPVLLAVAFLTLVERKVLGYMQFRKGPKVVGPYGLLQPFADGLKLFIKETLKPSS 69
Query: 59 THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
+F V L +L F+P+ S L L+L+ L + + I+ + +S
Sbjct: 70 ASPYLFFASPVLFLTLALLLWNFMPVTS-PALDLQLSLLLVLGLSSLSVYAILGSGWASN 128
Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
+ Y+ IGA RA+ ++ ++ L V++ +F+ IV A + +S+ LPL
Sbjct: 129 SKYSLIGAIRAVAQTISYEISLALIFVSIILLVSSFNLIYIVTAGEFSWFSMSCLPLFYI 188
Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
+ + A + PFD+ EI VE+ G + + + LF +
Sbjct: 189 WLVSTL---AETNRAPFDLTEGESEIVSAINVEYAGGPFALFFIAEYANIILMNLFSVVL 245
Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK--WP 296
FLGG + + P+ L +L IK ++F + + +PRF DQ WK P
Sbjct: 246 FLGGTLPINNNYPL-----NLLLLGIKTTLLVFFFLWVRAAYPRFRYDQLMFLTWKSYLP 300
Query: 297 TIIAAL 302
I AL
Sbjct: 301 FAIGAL 306
>sp|O78694|NU1M_SAGOE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399714|dbj|BAA32097.1|
(AB010972) NADH dehydrogenase subunit 1 [Saguinus
oedipus]
Length = 318
Score = 77.3 bits (187), Expect = 2e-13
Identities = 82/304 (26%), Positives = 137/304 (44%), Gaps = 36/304 (11%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKENV-TH 60
+L+++ + V F+ + RKV + R GP I QPI D +KLF K+ + T
Sbjct: 6 LLVVILSALVAMAFLTLTERKVLGYMQFRKGPNIVGPYGTLQPIADAMKLFTKEPLLPTS 65
Query: 61 GVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGN 119
+ I L +I L++ PL L + L+ I + + I+++ +S +
Sbjct: 66 STSTLYLIAPTLALSISLLLWTPLPMPYPLMNFNLGLLFILATSSLAVYSILWSGWASNS 125
Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
YA IGA RA+ ++ +V L ++++ G+F+ ++ Q+ H W +F P A
Sbjct: 126 NYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFNLQSLITTQE-HSWLLF--PSWPLA 182
Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF---- 235
+ + I A + PFD+ E+ G +++A G FA LFF
Sbjct: 183 MMWFISTLAETNRAPFDLTEGESELVSG------------FNIEYAAGSFA--LFFMAEY 228
Query: 236 SNIFLGGAVITT-FSSPILNTLA----TLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
NI + A+ TT F + NT A T+ + K L + + + I T +PRF DQ
Sbjct: 229 MNIIMMNALTTTIFLAAPHNTAAPETYTIN-FMTKTLLLTTLFLWIRTAYPRFRYDQLMH 287
Query: 291 FYWK 294
WK
Sbjct: 288 LLWK 291
>gi|5835155 NADH dehydrogenase subunit 1 [Gorilla gorilla]
>gi|6045104|dbj|BAA85277.1| (D38114) NADH dehydrogenase
subunit 1 (ND1) [Gorilla gorilla]
Length = 318
Score = 77.3 bits (187), Expect = 2e-13
Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 22/297 (7%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-NVTH 60
+L+L+ + F+ + RK+ + R GP + QP D +KLF K+ +
Sbjct: 6 LLLLIVPILIAMAFLMLTERKILGYMQLRKGPNVVGPYGLLQPFADAMKLFTKEPLKPST 65
Query: 61 GVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGN 119
I + L TI L++ PL + L L+ I + + I+++ +S +
Sbjct: 66 STITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSILWSGWASNS 125
Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
YA IGA RA+ ++ +V L +++ G+F+ ++M Q+ H W + LP A
Sbjct: 126 NYALIGALRAVAQTISYEVTLAIILLSTLLMNGSFNLSTLIMTQE-HLWLL--LPTWPLA 182
Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
+ + I A + PFD+ E+ G +E+ L + + + + + IF
Sbjct: 183 MMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPLALFFMAEYMNIIMMNTLTTMIF 242
Query: 240 LGGAVITTFS--SPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
LG TT++ SP L T+ + K L + + + I T +PRF DQ WK
Sbjct: 243 LG----TTYNAHSPELYTVC----FITKTLLLTSLFLWIRTAYPRFRYDQLMHLLWK 291
>gb|AAG28190.1|AF304201_1 (AF304201) NADH1 [Sus scrofa]
Length = 318
Score = 77.3 bits (187), Expect = 2e-13
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 21/300 (7%)
Query: 5 IVNAI-LILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKEN 57
++NA+ LI+ V F+ + + RKV + R GP + QPI D +KLF K+
Sbjct: 3 MINALSLIIPILLAVAFLTL-VERKVLGYMQLRKGPNVVGPYGLLQPIADALKLFTKEPL 61
Query: 58 VTHGVIFDFGIVFALGATILAL-MFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMFAAM 115
F I+ + A LAL M+IPL ++ ++ + + + + I+++
Sbjct: 62 RPATSSFSMFIIAPILALSLALTMWIPLPMPYPLINMNLGVLFMLAMSSLAVYSILWSGW 121
Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF-HLP 174
+S + YA IGA RA+ ++ +V L ++++ G+++ ++ Q+ H W IF P
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSYTLSTLITTQE-HIWMIFTSWP 180
Query: 175 LLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLF 234
L A+ + I A + PFD+ E+ G VE+ + + + F
Sbjct: 181 L---AMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFMAEYANIIMMNAF 237
Query: 235 FSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+ +FLG T P L T+ +L K LA+ + I +PRF DQ WK
Sbjct: 238 TAILFLG-----TSHDPHTPELYTINFVL-KTLALTITFLWIRASYPRFRYDQLMHLLWK 291
>sp|P92718|NU1M_PONPP NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|1743309|emb|CAA66304.1|
(X97718) NADH1 [Pongo pygmaeus pygmaeus]
Length = 318
Score = 76.9 bits (186), Expect = 3e-13
Identities = 74/300 (24%), Positives = 129/300 (42%), Gaps = 21/300 (7%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-N 57
++N +L+ + M RK+ R GP I QP D +KLF K+
Sbjct: 3 VINLLLLTMSILIAMAFLMLTERKILGYTQLRKGPNIVGPCGLLQPFADALKLFTKEPLK 62
Query: 58 VTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMS 116
+ I + + AL TI L++ PL + L L+ I + + I+++ +
Sbjct: 63 PSTSTIILYIVSPALALTIALLLWTPLPMPNPLINLNLGLLFILATSSLTVYSILWSGWA 122
Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
S + YA IG RA+ ++ ++ L ++++ G+F+ ++ Q+ H W + LP
Sbjct: 123 SNSNYALIGTLRAVAQTISYEITLALILLSVLLMSGSFNLSTLITTQE-HSWLL--LPSW 179
Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
A+ + I A + PFD+ E+ G E+ + + + +
Sbjct: 180 PLALMWFISTLAETNRAPFDLTEGESELVSGFNTEYAAGPFALFFMAEYTNIILMNALTA 239
Query: 237 NIFLGGAVITTFS--SPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
IFLG TTF+ SP L+T + IK L + + + I + +PRF DQ WK
Sbjct: 240 MIFLG----TTFNIHSPELHTT----LFTIKTLLLTSLFLWIRSTYPRFRYDQLMHLLWK 291
>gi|5835360 NADH dehydrogenase subunit 1 [Macropus robustus]
>gi|2829762|sp|P92659|NU1M_MACRO NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431957|pir||T11428 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
wallaroo mitochondrion >gi|1850862|emb|CAA71536.1|
(Y10524) NADH dehydrogenase subunit 1 [Macropus
robustus]
Length = 318
Score = 76.9 bits (186), Expect = 3e-13
Identities = 75/296 (25%), Positives = 132/296 (44%), Gaps = 20/296 (6%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKK--ENVT 59
+L+ + + F+ ++ RKV + R GP I QPI D +KLF K+ +T
Sbjct: 6 LLLYIVPILLAVAFLTLVERKVLGYMQFRKGPNIVGPYGLLQPIADAVKLFTKEPLRPLT 65
Query: 60 HGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSG 118
V F I L T+ ++ PL L L+ I L + + I+++ +S
Sbjct: 66 SSVSM-FIIAPILALTLALTIWTPLPMPHALIDLNLGLLFILSLSGLSVYSILWSGWASN 124
Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
+ YA IGA RA+ ++ +V L ++++ G+F+ +++ Q+ + PL
Sbjct: 125 SKYALIGALRAVAQTISYEVTLAIILLSIMLINGSFTLKNLIITQENMWLIVATWPL--- 181
Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
A+ + I A + PFD+ E+ G VE+ + + + A + +
Sbjct: 182 AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIMAMNAMTAIL 241
Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
FLG ++ S LNTL+ ++K L + F+ + I +PRF DQ WK
Sbjct: 242 FLGSSLNHNLSH--LNTLS----FMLKTLFLTFMFLWIRASYPRFRYDQLMHLLWK 291
>sp|O78710|NU1M_PERGU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3401925|dbj|BAA32119.1|
(AB011227) NADH dehydrogenase subunit 1 [Perameles
gunnii]
Length = 318
Score = 76.9 bits (186), Expect = 3e-13
Identities = 74/298 (24%), Positives = 129/298 (42%), Gaps = 17/298 (5%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-N 57
I+N +L ++ I RKV + R GP I QP D +KLF K+
Sbjct: 3 IINLLLYIVPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAVKLFTKEPLR 62
Query: 58 VTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMFAAMS 116
I F I L T+ +++PL S++ L+ I L + + I+++ +
Sbjct: 63 PLTSSISMFIIAPILALTLALTIWVPLPMPYSLIDLNMGLLFILALSGLSVYSILWSGWA 122
Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
S + YA IGA RA+ ++ +V L ++++ G+F+ ++ Q+ + PL
Sbjct: 123 SNSKYALIGALRAVAQTISYEVTLAIILLSIMLINGSFTLKTLITTQENMWLIVTTWPL- 181
Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
A+ + I A + PFD+ E+ G VE+ + + + +
Sbjct: 182 --AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIIVMNAMTT 239
Query: 237 NIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+FLG ++ F+ LNTL+ ++K L + V + I +PRF DQ WK
Sbjct: 240 ILFLGTSINQNFTH--LNTLS----FMMKTLTLTIVFLWIRASYPRFRYDQLMHLLWK 291
>gi|5836031 NADH dehydrogenase subunit 1 [Hippopotamus amphibius]
>gi|6647645|sp|Q9ZZZ1|NU1M_HIPAM NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|4127864|emb|CAA09428.1|
(AJ010957) NADH1 [Hippopotamus amphibius]
Length = 318
Score = 76.5 bits (185), Expect = 4e-13
Identities = 76/299 (25%), Positives = 132/299 (43%), Gaps = 19/299 (6%)
Query: 5 IVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE- 56
I+N L+L+ + F+ ++ RK+ + R GP I QP D IKLF K+
Sbjct: 3 IINT-LMLVAPILLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPL 61
Query: 57 NVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMFAAM 115
+ + F I L T+ M+IPL ++ ++ + + + + I+++
Sbjct: 62 RPSTSSVSMFIIAPILALTLALTMWIPLPMPYPLINMNLGVLFMLAMSSLAVYSILWSGW 121
Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
+S + YA IGA RA+ ++ +V L ++++ G+F+ ++ Q+ W IF P
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSILLMNGSFTLSTLITTQE-KLWLIF--PS 178
Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
A+ + I A + PFD+ E+ G VE+ + + I + F
Sbjct: 179 WPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFMAEYINIIMMNAFT 238
Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+ +FLG T +P L L T+ IK L + + I +PRF DQ WK
Sbjct: 239 TVLFLG-----TCYNPYLPELYTIN-FTIKTLLLTMSFLWIRASYPRFRYDQLMHLLWK 291
>gi|11465884 NADH dehydrogenase subunit 1 [Ochromonas danica]
>gi|10505217|gb|AAG18399.1|AF287134_24 (AF287134) NADH
dehydrogenase subunit 1 [Ochromonas danica]
Length = 325
Score = 76.5 bits (185), Expect = 4e-13
Identities = 72/301 (23%), Positives = 125/301 (40%), Gaps = 16/301 (5%)
Query: 4 VIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKEN 57
+++ +LI+L F RK+ +HRR GP + QP+ D KLF K+
Sbjct: 6 ILIKILLIILPLLISVAYFTLAERKILGAIHRRRGPNVVGVYGLLQPLSDGFKLFVKETV 65
Query: 58 V---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITF-LLEIPMLGIMFA 113
+ + VIF + +++ IP + L IL F + + + G++ +
Sbjct: 66 IPSSANKVIFIISPMIFFVVSLMGWAIIPFDKYAYLADMNIGILYLFGVSSLGVYGVVMS 125
Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHL 173
SS + YA +GA R+ +++ +V +GF I+++ G+F I+ Q+ + I
Sbjct: 126 GWSSNSKYAFLGALRSTAQMVSYEVSIGFIIISIVLCCGSFELQTIISCQKNVWFVIPFF 185
Query: 174 PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETL 233
PL L + A + PFD+ A E+ G VE+ + + + + +
Sbjct: 186 PLFLMFFTSAL---AETNRHPFDLPEAEAELVSGYNVEYSAMGFALFSLGEYSNMLSMSA 242
Query: 234 FFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
+F GG + IL GV I +L+V PR+ DQ W
Sbjct: 243 INVILFFGGWLAPLSFFDILPGSFWFGV-KISFFVILYV--WARAALPRYRYDQLMNIGW 299
Query: 294 K 294
K
Sbjct: 300 K 300
>sp|O78705|NU1M_MACRU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3401915|dbj|BAA32114.1|
(AB011222) NADH dehydrogenase subunit 1 [Macropus rufus]
Length = 318
Score = 76.1 bits (184), Expect = 5e-13
Identities = 77/299 (25%), Positives = 132/299 (43%), Gaps = 19/299 (6%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK--E 56
I+N +L ++ + RKV + R GP I QPI D IKLF K+
Sbjct: 3 IINLLLYIVPILLAVAFLTLVERKVLGYMQFRKGPNIVGPYGLLQPIADGIKLFTKEPLR 62
Query: 57 NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAM 115
+T V F I L T+ ++ PL L L+ I L + + I+++
Sbjct: 63 PLTSSVSM-FIIAPILALTLALTIWTPLPMPHTLIDLNLGLLFILSLSGLSVYSILWSGW 121
Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
+S + YA IGA RA+ ++ +V L ++++ G+F+ +++ Q+ + PL
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSIMLINGSFTLKNLLITQENMWLIVSTWPL 181
Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
A+ + I A + PFD+ E+ G VE+ + + + A
Sbjct: 182 ---AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIMAMNAMT 238
Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+ +FLG ++ FS L+TL+ ++K L + F+ + I +PRF DQ WK
Sbjct: 239 AILFLGSSLNHNFSH--LSTLS----FMLKTLFLTFMFLWIRASYPRFRYDQLMYLLWK 291
>gi|5835127 NADH dehydrogenase subunit 1 [Pan troglodytes]
>gi|6045095|dbj|BAA85268.1| (D38113) NADH dehydrogenase
subunit 1 [Pan troglodytes]
Length = 318
Score = 76.1 bits (184), Expect = 5e-13
Identities = 78/305 (25%), Positives = 130/305 (42%), Gaps = 20/305 (6%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-NVTH 60
+L+L+ + F+ + RK+ + R GP I QP D +KLF K+ +
Sbjct: 6 LLLLIVPILIAMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPST 65
Query: 61 GVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGN 119
I + L TI L++ PL + L L+ I + + I+++ +S +
Sbjct: 66 STITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSILWSGWASNS 125
Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
YA IGA RA+ ++ +V L +++ G+F+ +V Q+ H W I LP A
Sbjct: 126 NYALIGALRAVAQTISYEVTLAIILLSTLLMSGSFNLSTLVTTQE-HLWLI--LPTWPLA 182
Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
+ + I A + PFD+ E+ G +E+ + + + + + IF
Sbjct: 183 MMWFISTLAETNRTPFDLTEGESELVSGFNIEYAAGPFALFFMAEYMNIIMMNTLTATIF 242
Query: 240 LGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK--WPT 297
L GA T S + T LL+ L + I T +PRF DQ WK P
Sbjct: 243 L-GATYNTHSPELYTTYFVTKALLLTSL-----FLWIRTAYPRFRYDQLMHLLWKNFLPL 296
Query: 298 IIAAL 302
+A+L
Sbjct: 297 TLASL 301
>gb|AAF66626.1| (AF142996) NADH dehydrogenase subunit 1 [Pteronotus davyi]
Length = 302
Score = 76.1 bits (184), Expect = 5e-13
Identities = 73/303 (24%), Positives = 134/303 (44%), Gaps = 23/303 (7%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
++ ++ I ILL F+ I RK+ + R GP + QPI D +KLF K
Sbjct: 3 LINLLAMIIPILLAVAFLTL----IERKILGYMQLRKGPNVVGPYGLLQPIADAVKLFTK 58
Query: 55 K--ENVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIM 111
+T + F I L T+ M+IPL ++ + + + + + I+
Sbjct: 59 DPLRPLTSSITM-FIIAPILALTLALTMWIPLPMPYPLINMNLSELFMLAMSSLAVYAIL 117
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
++ +S + YA IGA RA+ ++ +V L ++++ G+++ +++ Q+ + W I
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSYTLSTLIITQE-YTWLI- 175
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
+P A+ + I A + PFD+ E+ G VE+ G + + +
Sbjct: 176 -IPACPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMM 234
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
+ +FLG +++PI+ L T +IK L + + I +PRF DQ
Sbjct: 235 NALTTILFLGA-----YNNPIMPELYTTN-FMIKTLLLTTFFLWIRASYPRFRYDQLMHL 288
Query: 292 YWK 294
WK
Sbjct: 289 LWK 291
>gi|5834968 NADH dehydrogenase subunit 1 [Paracentrotus lividus]
>gi|128647|sp|P12772|NU1M_PARLI NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431898|pir||A34284 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - sea
urchin (Paracentrotus lividus) mitochondrion
>gi|854686|gb|AAA68133.1| (J04815) NADH dehydrogenase
subunit 1 [Paracentrotus lividus]
>gi|7322052|gb|AAA65506.2| (M37162) NADH dehydrogenase
[Paracentrotus lividus]
Length = 323
Score = 75.7 bits (183), Expect = 7e-13
Identities = 76/311 (24%), Positives = 138/311 (43%), Gaps = 20/311 (6%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK---KENV 58
+L L + F+ ++ RKV + R GP I QP D +KLF K K +
Sbjct: 10 LLSFLVPVLLAVAFLTLVERKVLGYMQFRKGPNIVGPYGLLQPFADGLKLFIKETLKPST 69
Query: 59 THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
+F + + +L +P+ + L L+L+ L + + I+ + ++
Sbjct: 70 ASPYLFFLSPLLFMALALLLWNLMPVHT-PTLNFQLSLLLVLGLSSLSVYAILGSGWAAN 128
Query: 119 NPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLA 178
+ Y+ IGA RA+ ++ ++ L +++L +F+ I+ AQ+ +++ LPL
Sbjct: 129 SKYSLIGAIRAVAQTISYEISLALILLSLIIITSSFNLTYIMNAQEFSWFALSCLPLF-- 186
Query: 179 AIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNI 238
+ + A + PFD+ EI G VE+ G + + + LF I
Sbjct: 187 -YIWFVSTLAETNRAPFDLTEGESEIVSGYNVEYAGGPFALFFIAEYANIILMNLFSVVI 245
Query: 239 FLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPTI 298
FLGG P LN L T+G +K ++F+ + + +PRF DQ WK +
Sbjct: 246 FLGGPWPANELFP-LNVL-TIG---LKTTLLVFLFLWVRAAYPRFRYDQLMFLTWK-SYL 299
Query: 299 IAALGAILASL 309
++GA+ A++
Sbjct: 300 PLSIGALCATI 310
>pir||S34388 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - jelly fungus
(Trimorphomyces papilionaceus) mitochondrion
>gi|393383|emb|CAA52037.1| (X73821) NADH dehydrogenase
subunit 1 [Trimorphomyces papilionaceus]
Length = 328
Score = 75.7 bits (183), Expect = 7e-13
Identities = 70/255 (27%), Positives = 116/255 (45%), Gaps = 16/255 (6%)
Query: 1 MLRVIVNA--ILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKL 51
ML V+ N +LI+L + FM II RKV A + RR+GP + QP D +KL
Sbjct: 1 MLAVLYNLLEVLIVLVPILLSVAFMTIIERKVLAAMQRRVGPNKVGYYGVLQPFADALKL 60
Query: 52 FGKKENVTHGV---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPM 107
K+ + +F V L ++L IP G+ L + IL T + + +
Sbjct: 61 VVKETVIPAQATKSLFFLAPVITLIFSLLGWGVIPFGAGLTLSDFSLGILYTLAISSVGV 120
Query: 108 LGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
G++FA S+ + YA +G+ R+ +++ ++ L AI+ + G+F+ I+ Q+
Sbjct: 121 YGVLFAGWSANSKYAFLGSLRSTAQMISYELILSSAILTVILLTGSFNIISIIENQEAI- 179
Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
W F +PLL I + I A + PFD+ A E+ G E G +
Sbjct: 180 W--FVVPLLPMFIIFFISALAETNRTPFDLPEAESELVAGFFTEHSGMIFVFFFLGEYCS 237
Query: 228 LFAETLFFSNIFLGG 242
+ + + +F GG
Sbjct: 238 IVLMSTLTAILFFGG 252
>sp|O78708|NU1M_VOMUR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3401921|dbj|BAA32117.1|
(AB011225) NADH dehydrogenase subunit 1 [Vombatus
ursinus]
Length = 318
Score = 75.7 bits (183), Expect = 7e-13
Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 17/298 (5%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-N 57
I+N +L ++ + RKV + R GP I QPI D +KLF K+
Sbjct: 3 IINLLLYIVPILLAVAFLTLVERKVLGYMQFRKGPNIVGPYGLLQPIADAVKLFTKEPLR 62
Query: 58 VTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMS 116
I F I L TI ++ PL L L+ I L + + I+++ +
Sbjct: 63 PLTSSISMFIIAPILALTIALTIWTPLPMPHTLIDLNLGLLFILALSGLSVYSILWSGWA 122
Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
S + YA IGA RA+ ++ +V L ++++ G+F+ +++ Q+ + PL
Sbjct: 123 SNSKYALIGALRAVAQTISYEVTLAIILLSIMLINGSFTLKNLIITQENMELIVTTWPL- 181
Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
A+ + + A + PFD+ E+ G VE+ + + + +
Sbjct: 182 --AMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIMVMNAMTT 239
Query: 237 NIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+FLG ++ F+ LNTL+ + K LA+ + + I +PRF DQ WK
Sbjct: 240 ILFLGSSLNHNFTH--LNTLS----FMTKTLALTLLFLWIRASYPRFRYDQLMHLLWK 291
>gi|10803739 NADH dehydrogenase subunit 1 [Gonostoma gracile]
>gi|5509866|dbj|BAA82485.1| (AB016274) NADH
dehydrogenase subunit 1 [Gonostoma gracile]
Length = 321
Score = 75.7 bits (183), Expect = 7e-13
Identities = 87/314 (27%), Positives = 143/314 (44%), Gaps = 45/314 (14%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
++ +V A+ +LL F+ + RK+ + R GP + QP+ D +KLF K
Sbjct: 6 LVNPLVLAVPVLLAVAFLTLLE----RKILGYMQLRKGPNTIGPYGLLQPVADGVKLFTK 61
Query: 55 ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGI 110
+ + + ++F + AL T+ L++ PL + L+ I L + + I
Sbjct: 62 EPIRPSTSSPLMFLATPILAL--TLALLLWTPLPAPYPAADLNLGLLFILALSSLAVYSI 119
Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
+ + +S + YA IGA RA+ ++ +V LG ++ + G F T + + A Q + W I
Sbjct: 120 LGSGWASNSKYALIGALRAIAQTISYEVSLGLILLCTITFAGNF-TLQTLNAAQENMWLI 178
Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
LP AA + + A + PFD+ E+ G V++A G FA
Sbjct: 179 --LPAWPAAAMWLVSTLAETNRTPFDLAEGESELVSG------------FNVEYAAGPFA 224
Query: 231 ETLFF----SNIFLGGAVITT-FSSPILN----TLATLGVLLIKQLAVLFVAIL-ISTIF 280
LFF +NI A+ TT F P LN L+TL ++L + A+L ++ L +
Sbjct: 225 --LFFLAEYANILFMNALSTTLFLGPSLNPHTPELSTLNLML--KTALLSISFLWVRATL 280
Query: 281 PRFTIDQAAKFYWK 294
PRF DQ WK
Sbjct: 281 PRFRYDQLMHLIWK 294
>gb|AAF66628.1| (AF142998) NADH dehydrogenase subunit 1 [Pteronotus parnellii]
Length = 297
Score = 75.7 bits (183), Expect = 7e-13
Identities = 72/303 (23%), Positives = 134/303 (43%), Gaps = 26/303 (8%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
+L +IV +L + + T V RK+ + R GP + QPI D +KLF K
Sbjct: 6 LLSMIVPILLAVAFLTLVE-------RKILGYMQLRKGPNVVGPHGLLQPIADAVKLFTK 58
Query: 55 K--ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIM 111
+ +T + F I L T+ M++PL L ++ + + + + I+
Sbjct: 59 EPLRPLTSSITM-FIIAPILALTLALTMWVPLPMPHPLINMNLGVLFMLAMSSLAVYAIL 117
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
++ +S + YA IGA RA+ ++ +V L ++++ G+++ ++ Q+ + W I
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSYTLSTLITTQE-YMWLI- 175
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
+P A+ + I A + PFD+ E+ G VE+ G + + +
Sbjct: 176 -IPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMM 234
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
+ +FLG +++PI+ L T ++K L + + I +PRF DQ
Sbjct: 235 NALTTILFLGA-----YNNPIMPELYTTN-FMVKTLLLTMSFLWIRASYPRFRYDQLMHL 288
Query: 292 YWK 294
WK
Sbjct: 289 LWK 291
>emb|CAA66299.1| (X97713) NADH1 [Pongo pygmaeus pygmaeus]
Length = 318
Score = 75.3 bits (182), Expect = 9e-13
Identities = 71/301 (23%), Positives = 129/301 (42%), Gaps = 23/301 (7%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK---K 55
++N +L+ + M RK+ R GP I QP D +KLF K K
Sbjct: 3 VINLLLLTMSILIAMAFLMLTERKILGYTQLRKGPNIVGPCGLLQPFADALKLFTKEPLK 62
Query: 56 ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAM 115
+ + +++ AL +L +P+ + + G L+ I + + I+++
Sbjct: 63 PSTSTTILYIVSPALALTIALLLWTPLPMPNPLINLNLG-LLFILATSSLTVYSILWSGW 121
Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
+S + YA IG RA+ ++ ++ L ++++ G+F+ ++ Q+ H W + LP
Sbjct: 122 ASNSNYALIGTLRAVAQTISYEITLALILLSVLLMSGSFNLSTLITTQE-HSWLL--LPS 178
Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
A+ + I A + PFD+ E+ G E+ + + +
Sbjct: 179 WPLALMWFISTLAETNRAPFDLTEGESELVSGFNTEYAAGPFALFFMAEYTNIILMNALT 238
Query: 236 SNIFLGGAVITTFS--SPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
+ IFLG TTF+ SP L+T + IK L + + + I + +PRF DQ W
Sbjct: 239 AMIFLG----TTFNIHSPELHTT----LFTIKTLLLTSLFLWIRSTYPRFRYDQLMHLLW 290
Query: 294 K 294
K
Sbjct: 291 K 291
>sp|O78701|NU1M_BRAVA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399741|dbj|BAA32110.1|
(AB011218) NADH dehydrogenase subunit 1 [Bradypus
variegatus]
Length = 318
Score = 74.9 bits (181), Expect = 1e-12
Identities = 80/310 (25%), Positives = 138/310 (43%), Gaps = 38/310 (12%)
Query: 4 VIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFGKK- 55
+++ IL L+ + F+ + RK+ + R GP + QP+ D +KLF K+
Sbjct: 1 MLLTNILCLMMPILLAVAFLTLTERKILGHMQLRKGPNTVGPHGLLQPVADAVKLFTKEP 60
Query: 56 -ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFA 113
+T + F I L T+ ++ PL L ++ I + + + I+++
Sbjct: 61 LHPLTSSKLM-FIIAPTLAFTLALSLWAPLPMPHPLINLNLSILFILAMSSLAVHSILWS 119
Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHL 173
+S + YA IGA RA+ ++ +V L ++++ G+F+ + + Q+ W I L
Sbjct: 120 GWASNSKYALIGALRAVAQTISYEVTLAIILLSIMLINGSFTLSTLTITQE-QMWLI--L 176
Query: 174 PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETL 233
P A+ + I A + PFD+ E+ G V++A G FA L
Sbjct: 177 PTWPLAMMWFISTLAETNRTPFDLSEGESELVSG------------FNVEYAAGPFA--L 222
Query: 234 FF----SNIFLGGAVITT-----FSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFT 284
FF +NI L A+ T F +P+ L T+ L K L ++F+ + I +PRF
Sbjct: 223 FFMAEYTNIILMNALTATLFFGAFHNPLFPELHTIN-LTTKTLILVFLFLWIRASYPRFR 281
Query: 285 IDQAAKFYWK 294
DQ WK
Sbjct: 282 YDQLMHLLWK 291
>gi|5835653 NADH dehydrogenase subunit 1 [Canis familiaris]
>gi|7431918|pir||T11493 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - dog mitochondrion
>gi|4154171|gb|AAD04763.1| (U96639) NADH dehydrogenase
subunit 1 [Canis familiaris]
Length = 318
Score = 74.9 bits (181), Expect = 1e-12
Identities = 72/299 (24%), Positives = 135/299 (45%), Gaps = 22/299 (7%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK--E 56
I++ I+ +L A V F+ + + RKV + R GP I QPI D +KLF K+
Sbjct: 6 IISLIIPILLA--VAFLTL-VERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPLR 62
Query: 57 NVTHGV-IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAM 115
+T + +F + AL + + +P+ + G L ++ + + + I+++
Sbjct: 63 PLTSSMSMFILAPILALSLALTMWIPLPMPYPLINMNLGVLFMLA-MSSLAVYSILWSGW 121
Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
+S + YA IGA RA+ ++ +V L ++++ G+F+ +++ Q+ H W IF P
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLIITQE-HMWLIF--PA 178
Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
A+ + I A + PFD+ E+ G VE+ + + + +
Sbjct: 179 WPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNILT 238
Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+ +F G F +P + L ++ +K L + + I +PRF DQ WK
Sbjct: 239 TILFFG-----AFHNPFMPELYSIN-FTMKTLLLTICFLWIRASYPRFRYDQLMHLLWK 291
>gi|5835206 NADH dehydrogenase subunit 1 [Felis catus]
>gi|1352539|sp|P48900|NU1M_FELCA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431956|pir||T11402 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - cat
mitochondrion >gi|1098524|gb|AAC48569.1| (U20753) NADH
dehydrogenase subunit 1 [Felis catus]
>gi|1589115|prf||2210305A NADH dehydrogenase:SUBUNIT=1
[Felis catus]
Length = 318
Score = 74.5 bits (180), Expect = 2e-12
Identities = 74/303 (24%), Positives = 133/303 (43%), Gaps = 23/303 (7%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
M+ V+ I ILL F+ + RKV + R GP + QPI D +KLF K
Sbjct: 3 MINVLSLIIPILLAVAFLTL----VERKVLGYMQLRKGPNVVGPYGLLQPIADAVKLFTK 58
Query: 55 K--ENVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIM 111
+ +T ++ F + L T+ M+IPL ++ ++ + + + + I+
Sbjct: 59 EPLRPLTSSMLM-FIMAPILALTLALTMWIPLPMPYPLINMNLGVLFMLAMSSLAVYSIL 117
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
++ +S + YA IGA RA+ ++ +V L ++++ G+F T +++ Q + W I
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF-TLAMLITTQEYMWLI- 175
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
+P A+ + I A + PFD+ E+ G VE+ + + +
Sbjct: 176 -IPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFDVEYAAGPFALFFLAEYANIIMM 234
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
+ + +F G F SP + L T+ +K L + + I +PRF DQ
Sbjct: 235 NILTTILFFG-----AFHSPYMPELYTIN-FTVKTLLLTTTFLWIRASYPRFRYDQLMHL 288
Query: 292 YWK 294
WK
Sbjct: 289 LWK 291
>gi|11465930 NADH dehydrogenase subunit 1 [Pedinomonas minor]
>gi|7431930|pir||T11320 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Pedinomonas minor mitochondrion
>gi|4378774|gb|AAD19672.1| (AF116775) NADH dehydrogenase
subunit 1 [Pedinomonas minor]
Length = 310
Score = 74.5 bits (180), Expect = 2e-12
Identities = 84/317 (26%), Positives = 137/317 (42%), Gaps = 40/317 (12%)
Query: 10 LILLYATFVGFMFMGII-RKVTARVHRRIGPPI------YQPIIDTIKLFGKKENVTHGV 62
LILL + + F+ +I RKV A + RR GP Q I D +KL K G+
Sbjct: 16 LILLVSVLLSVAFLVLIERKVIAYIQRRRGPVFVGFWGALQSIADGLKLILKTNLSVFGI 75
Query: 63 ---IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSGN 119
I+ + ++L+ +FIPLG + + + L I L I + GI+ A +SS +
Sbjct: 76 EKSIYYASPFISFFISLLSWVFIPLGFL-LQDSDISLFFILALNSIGVYGILLAGLSSSS 134
Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
+A +G R+ +++ ++ L I ++ G S ++V Q+ + PLL
Sbjct: 135 RWAFLGGLRSAAQIISYELSLNICIFSIILCVGGLSIIKVVSFQEN---ILLVFPLLPFI 191
Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
+ I+ A + PFD+ A E+ G V++G + F+ F
Sbjct: 192 LISFIISLAEINRAPFDLPEAEAELVAGYNVDYG------------------AINFTFFF 233
Query: 240 LGGAVITTFSSPILNTL--ATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWKWPT 297
LG S I+ L +L +LI + +F+ I + PR+ DQ K WK
Sbjct: 234 LGEYTHIVLISFIMAKLFFGSLNTILI-PIFFIFLIIQVRAALPRYRYDQLMKLGWKELL 292
Query: 298 IIA-----ALGAILASL 309
+I+ L IL SL
Sbjct: 293 LISFSCMFILSMILLSL 309
>gb|AAF61229.1|AF234897_1 (AF234897) NADH dehydrogenase I [Haemulon plumieri]
Length = 324
Score = 74.5 bits (180), Expect = 2e-12
Identities = 81/305 (26%), Positives = 139/305 (45%), Gaps = 26/305 (8%)
Query: 4 VIVNAI--LILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
VI++ I L L+ + F+ ++ RKV + R GP + QPI D +KLF K
Sbjct: 5 VIIHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64
Query: 55 ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
+ + + ++F + AL + +PL V G L ++ L + + I+
Sbjct: 65 EPVRPSTSSPLLFLLAPMLALSLALTLWAPMPLPYPMVDLNLGILFILA-LSSLTVYSIL 123
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
+ +S + YA IGA RA+ ++ +V LG ++ + G F+ +AQ+ W I
Sbjct: 124 GSGWASNSKYALIGALRAVAQTISYEVSLGLILLGTIIFIGGFTLQTFNVAQE-SVWLI- 181
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFA 230
LP A + + A + PFD+ E+ G VE+ GG + ++A L
Sbjct: 182 -LPAWPLAAMWYVSTFAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL-ISTIFPRFTIDQAA 289
TL +N+F+G + +P+ L + L+ + A+L +A L + +PRF DQ
Sbjct: 241 NTL-SANLFMGAS-----HAPLYPELTAIN--LMTKAALLSIAFLWVRASYPRFRYDQLM 292
Query: 290 KFYWK 294
WK
Sbjct: 293 HLIWK 297
>gi|5835251 NADH dehydrogenase subunit 1 [Locusta migratoria]
>gi|128643|sp|P09045|NU1M_LOCMI NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|102855|pir||S06214 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
migratory locust mitochondrion >gi|13088|emb|CAA28904.1|
(X05286) ND-1 (URF-1) [Locusta migratoria]
>gi|1182018|emb|CAA56530.1| (X80245) ND1 [Locusta
migratoria]
Length = 313
Score = 74.1 bits (179), Expect = 2e-12
Identities = 72/303 (23%), Positives = 125/303 (40%), Gaps = 28/303 (9%)
Query: 2 LRVIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
L + V L+L+ + F+ ++ RKV +H R GP I QP D IKLF K
Sbjct: 5 LFMFVLNFLLLIICVLISVAFLTLMERKVLGYIHIRKGPNKVGFLGIPQPFSDAIKLFCK 64
Query: 55 KENV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
++ + ++ ++ F VF L ++L + P + YG L L + M
Sbjct: 65 EQPIPFMSNYFLYYFSPVFNLMLSLLIWVIFPYLTYMCSFPYGFYFLCCTSLSV--YTFM 122
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
A SS + YA +G+ R++ ++ +V L +++L G+F+ + Q + +F
Sbjct: 123 IAGWSSNSNYALLGSLRSVAQTISYEVSLALILLSLIILIGSFNMLYFMNFQLYCWFIVF 182
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
PL L+ + A + PFD E+ G +E+ ++ + +
Sbjct: 183 SFPLALSFFGSSL---AETNRTPFDFAEGESELVSGFNIEYSTGGFTLIFLAEYSSIIFM 239
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
++ FS IFLGG + + K V F + + PRF D+
Sbjct: 240 SMLFSLIFLGGDFYSFY-------------FFFKLSLVSFFFVWVRGTLPRFRYDKLMYL 286
Query: 292 YWK 294
WK
Sbjct: 287 AWK 289
>sp|P92604|NU1M_CANFA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|1809242|gb|AAB41650.1|
(U41443) NADH dehydrogenase subunit 1 [Canis familiaris]
Length = 318
Score = 74.1 bits (179), Expect = 2e-12
Identities = 72/299 (24%), Positives = 134/299 (44%), Gaps = 22/299 (7%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK--E 56
I++ I+ +L A V F+ + + RKV + R GP I QPI D +KLF K+
Sbjct: 6 IISLIIPILLA--VAFLTL-VERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPLR 62
Query: 57 NVTHGV-IFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAM 115
+T + +F + AL + +P+ + G L ++ + + + I+++
Sbjct: 63 PLTSSMSMFILAPILALSLALTMWSPLPMPYPLINMNLGVLFMLA-MSSLAVYSILWSGW 121
Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
+S + YA IGA RA+ ++ +V L ++++ G+F+ +++ Q+ H W IF P
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLIITQE-HMWLIF--PA 178
Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
A+ + I A + PFD+ E+ G VE+ + + + +
Sbjct: 179 WPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMNILT 238
Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+ +F G F +P + L ++ +K L + + I +PRF DQ WK
Sbjct: 239 TVLFFG-----AFHNPFMPELYSIN-FTMKTLLLTICFLWIRASYPRFRYDQLMHLLWK 291
>pir||T14245 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
dermatophytic fungus (Trichophyton rubrum) mitochondrion
>gi|3947743|emb|CAA77189.1| (Y18476) NADH dehydrogenase
subunit 1 [Trichophyton rubrum]
Length = 343
Score = 74.1 bits (179), Expect = 2e-12
Identities = 80/301 (26%), Positives = 132/301 (43%), Gaps = 32/301 (10%)
Query: 27 RKVTARVHRRIGPPIY------QPIIDTIKLFGKK---ENVTHGVIFDFGIVFALGATIL 77
RK A + RR+G I Q D +KL K+ + ++ G + L ++L
Sbjct: 29 RKTMASMQRRLGQNIVGYYGLLQAFADALKLLLKEYVAPTQANIILLFLGPIITLIFSLL 88
Query: 78 ALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGNPYAGIGAQRALLTLLAI 136
IP GS + + ++ I + + GI+ A S+ + YA +G+ R+ L++
Sbjct: 89 GYRVIPYGSGLFISDFNLGILYILAVSSLATYGILLAGWSANSKYAFLGSLRSTAQLISY 148
Query: 137 QVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFD 196
++ L F I+ + + G+ + I+ +Q+V F LPLL + + I A + PFD
Sbjct: 149 ELLLRFYILLVILFTGSLNLTTIIESQKV---VYFILPLLPIFLIFFIGCIAETNRAPFD 205
Query: 197 IMIAPGEISLGPMVEFGGKYLGIL--QVQHAIGLFAETLFFSNIFLGGAVI--------- 245
+ A E+ G M E I Q+A + + S +FLGG +
Sbjct: 206 LAEAESELVSGFMTEHSAVIFMIFFFLAQYA-SIVLICILSSVLFLGGYLNILPLNTYNV 264
Query: 246 ----TTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK--WPTII 299
+ FS ++N L++L L IK ++FV I + FPR DQ W P II
Sbjct: 265 CDFNSLFSDYLINGLSSLN-LAIKTAFLIFVFIWVRASFPRIRFDQLMSVCWTILLPIII 323
Query: 300 A 300
A
Sbjct: 324 A 324
>gi|11602892 NADH dehydrogenase subunit 1 [Pteropus scapulatus]
>gi|11545676|gb|AAG37913.1|AF321050_1 (AF321050) NADH
dehydrogenase subunit 1 [Pteropus scapulatus]
Length = 318
Score = 74.1 bits (179), Expect = 2e-12
Identities = 80/304 (26%), Positives = 134/304 (43%), Gaps = 28/304 (9%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
+L VIV +L + + T + RKV + R GP + QP+ D +KLF K
Sbjct: 6 LLTVIVPILLAVAFLTLLE-------RKVLGYMQLRKGPNVVGPYGLLQPMADALKLFIK 58
Query: 55 K--ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIM 111
+ +T F I L T+ M+IPL L +L + + + I+
Sbjct: 59 EPLRPLTSSPSM-FIIAPILALTLALTMWIPLPMPHPLINMNLAVLFMLAMSSLAVYSIL 117
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
++ +S + YA IGA RA+ ++ +V L ++++ G+FS +++ Q+ H W +
Sbjct: 118 WSGWASNSKYALIGAMRAVAQTISYEVTLAIILLSVLLLSGSFSLSTLIITQE-HAWLL- 175
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFA 230
L A+ + I A + PFD+ E+ G VE+ GG + ++A +
Sbjct: 176 -LSSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFMAEYANIIMM 234
Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
TL + +F+G F P + L T L+ K L + + I +PRF DQ
Sbjct: 235 NTL-TAILFMG-----AFHDPTMPELYTTN-LITKTLLLTVFFLWIRASYPRFRYDQLMH 287
Query: 291 FYWK 294
WK
Sbjct: 288 LLWK 291
>pir||C69032 NADH dehydrogenase (ubiquinone), subunit 1 related protein -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622349|gb|AAB85726.1| (AE000891) NADH dehydrogenase
(ubiquinone), subunit 1 related protein
[Methanobacterium thermoautotrophicum]
Length = 329
Score = 73.7 bits (178), Expect = 3e-12
Identities = 73/311 (23%), Positives = 130/311 (41%), Gaps = 39/311 (12%)
Query: 6 VNAILILLYATFVGFMFMGIIRK-VTARVHRRIGPPIYQP-IIDTIKLFGKK----ENVT 59
V + ++ V GI RK V AR+ +RIGPP+ P ++ +K F KK +
Sbjct: 8 VTVLGTVILGLLVSLWLPGIERKFVHARIQQRIGPPVSSPGLMAALKFFYKKTVRPSSPL 67
Query: 60 HGVIFDFGIVFALGATILALMFIP----LGSISVLRAYGDLILITFLLEIPMLGIMFAAM 115
+ IV + A ++ L IP LG+++ L A + I ++ + M + + M
Sbjct: 68 PRLYNSLPIVGFISALLILLFLIPPMYTLGALASLVAIVGFLKIEEVIYVFMGSLSRSVM 127
Query: 116 SSGNPYAGIG-----------------AQRALLTLLAIQVPLGFAIVALAEYYGTFSTYE 158
S G P+ + + RA + P+ A+ A G+ +
Sbjct: 128 SMGMPFPDLARGAKHPDLQRYFLEDLSSMRAFRLIAFGSFPIYIALFVPAVMSGSIFLKD 187
Query: 159 IVMAQQVHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLG 218
IV Q VHG +F L ++ A+ + I + + PF I+ ++ GP +E+ +Y
Sbjct: 188 IVAYQAVHGPVLFTLAGVVGAVVFFIGYMILLNEYPFAILKTKADVIEGPYMEYAARYRA 247
Query: 219 ILQVQHAIGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLF--VAILI 276
+ + +F FS +FLG + + + G+L+ +A +F + +
Sbjct: 248 FVYITRGFLMFTLGCLFSVLFLG----------VPPNILSWGILVNIAVAAVFPILMAIF 297
Query: 277 STIFPRFTIDQ 287
S P FT Q
Sbjct: 298 SAFAPVFTFKQ 308
>gi|5835459 NADH dehydrogenase subunit 1 [Florometra serratissima]
>gi|7431923|pir||T11116 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Florometra serratissima
mitochondrion >gi|2970423|gb|AAD05073.1| (AF049132) NADH
dehydrogenase subunit 1 [Florometra serratissima]
Length = 325
Score = 73.7 bits (178), Expect = 3e-12
Identities = 85/305 (27%), Positives = 138/305 (44%), Gaps = 26/305 (8%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQP------IIDTIKLFGK 54
ML IVN I+ +L A V F+ + I RK+ + R GP I P I D IKLF K
Sbjct: 7 MLINIVNIIIPILIA--VAFIVL-IERKILGYMQLRKGPSIVGPSGTMQTIADGIKLFIK 63
Query: 55 KE----NVTHGVIFDFGIVFALGATIL-ALMFIPLGSISVLRAYGDLILITFLLEIPMLG 109
+ + T + F +F L A IL ++ P +I+V + LILI + + +
Sbjct: 64 ENLKPSSATPTLFFLSPALFLLLALILWTIIPCPNPNINVNLS---LILILGISSLSVYS 120
Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
++ +S + Y+ IG RA+ ++ ++ + +++L GTF+ I+ AQ + W
Sbjct: 121 LLGTGWASNSKYSLIGGIRAVAQTISYEISISIILLSLIILTGTFNLNAIINAQN-NSWL 179
Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
IF + L+ I Y I A + PFD+ E+ G VE+ G + + +
Sbjct: 180 IFSC-IPLSYIWY-ISSLAETNRTPFDLTEGESELVSGYNVEYAGGPFALFFLAEYANII 237
Query: 230 AETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAA 289
L + +FLGG + PI + ++ IK + + + FPRF DQ
Sbjct: 238 FINLLSTILFLGG------NLPINIFPINIIIIAIKTSILSSTFLWVRASFPRFRYDQLM 291
Query: 290 KFYWK 294
WK
Sbjct: 292 FLTWK 296
>gi|5835667 NADH dehydrogenase subunit 1 [Artibeus jamaicensis]
>gi|7431948|pir||T11140 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - fruit bat (Artibeus jamaicensis)
mitochondrion >gi|4164475|gb|AAD05438.1| (AF061340) NADH
dehydrogenase subunit 1 [Artibeus jamaicensis]
Length = 318
Score = 73.7 bits (178), Expect = 3e-12
Identities = 75/303 (24%), Positives = 128/303 (41%), Gaps = 26/303 (8%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
+L IV +L + + T V RK+ + R GP + QPI D +KLF K
Sbjct: 6 LLTTIVPVLLAVAFLTLVE-------RKILGYMQLRKGPNVVGPYGLLQPIADAVKLFIK 58
Query: 55 K--ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIM 111
+ +T + F I L T+ M+ PL L IL + + + I+
Sbjct: 59 EPLRPLTSSITM-FIIAPILALTLALTMWAPLPMPHPLINMNLSILFMLAMSSLAVYSIL 117
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
++ +S + YA IGA RA+ ++ +V L ++++ G++S ++ Q+ + W I+
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSYSLSTLITTQE-YMWLIY 176
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
P + + I A + PFD+ E+ G VE+ G + + +
Sbjct: 177 --PSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMM 234
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
+ +FLG + +PI L T+ IK L + + I +PRF DQ
Sbjct: 235 NALTTTLFLGA-----YHNPIFPELYTIN-FAIKTLLLTTTFLWIRASYPRFRYDQLMHI 288
Query: 292 YWK 294
WK
Sbjct: 289 LWK 291
>gb|AAF66625.1| (AF142995) NADH dehydrogenase subunit 1 [Artibeus lituratus]
Length = 305
Score = 73.7 bits (178), Expect = 3e-12
Identities = 75/303 (24%), Positives = 128/303 (41%), Gaps = 26/303 (8%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
+L IV +L + + T V RK+ + R GP + QPI D +KLF K
Sbjct: 6 LLTTIVPVLLAVAFLTLVE-------RKILGYMQLRKGPNVVGPYGLLQPIADAVKLFTK 58
Query: 55 K--ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIM 111
+ +T + F I L T+ M++PL L IL + + + I+
Sbjct: 59 EPLRPLTSSITM-FIIAPILALTLALTMWVPLPMPHPLINMNLSILFMLAMSSLAVYSIL 117
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
++ +S + YA IGA RA+ ++ +V L ++++ G++S ++ Q+ + W I+
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSYSLSTLITTQE-YMWLIY 176
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
P + + I A + PFD+ E+ G VE+ G + + +
Sbjct: 177 --PSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMM 234
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
+ +FLG + +PI L T IK L + + I +PRF DQ
Sbjct: 235 NALTTTLFLGA-----YHNPISPELYTTQ-FAIKTLXLTTTFLWIRASYPRFRYDQLMHL 288
Query: 292 YWK 294
WK
Sbjct: 289 LWK 291
>emb|CAA10597.1| (AJ132137) NADH dehydrogenase subunit 1 [Littorina saxatilis]
Length = 312
Score = 73.4 bits (177), Expect = 3e-12
Identities = 73/304 (24%), Positives = 132/304 (43%), Gaps = 27/304 (8%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
+L +V I +LL F F + RK + + R GP + QP+ D KL K
Sbjct: 5 LLSSLVAYICVLLAVAF----FTLLERKGLSYIQIRKGPNKVGIAGLPQPLADAAKLLTK 60
Query: 55 KENVTHGVIFDFGIVFA--LGATILALMFIPLGSISVLRAYGDLILITFLLE--IPMLGI 110
+ + V+ ++ F + + ILAL+ L +Y ++ FL + + G
Sbjct: 61 E--IAKPVMANYSPYFIAPIFSLILALLLWQLYPSLYSTSYFKWGILFFLCVSGLNVYGT 118
Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
+ A SS + YA +G+ RA+ ++ +V + ++ G+FS +E+ +Q+ S
Sbjct: 119 LLAGWSSNSKYALLGSLRAIAQTISYEVSMALVLLFPLFLVGSFSFFEVGESQESIWLSF 178
Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFA 230
LP+ + + + A + PFD E+ G +E+G ++ + +
Sbjct: 179 LMLPV---SFIWFVTCVAETNRAPFDFAEGESELVSGFNIEYGSAGFALIFLAEYANILV 235
Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
+LF S +F GG+ + F S I+ ++K L F+ I + +PRF D
Sbjct: 236 MSLFSSILFFGGSYMFFFESDIM--------FMLKILFFAFLFIWVRGSYPRFRYDLLMT 287
Query: 291 FYWK 294
WK
Sbjct: 288 LTWK 291
>gb|AAF61228.1|AF234896_1 (AF234896) NADH dehydrogenase I [Haemulon plumieri]
Length = 324
Score = 73.4 bits (177), Expect = 3e-12
Identities = 80/305 (26%), Positives = 137/305 (44%), Gaps = 26/305 (8%)
Query: 4 VIVNAI--LILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
VI++ I L L+ + F+ ++ RKV + R GP + QPI D +KLF K
Sbjct: 5 VIIHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64
Query: 55 ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
+ + + ++F + AL + +PL V G L ++ L + + I+
Sbjct: 65 EPVRPSTSSPLLFLLAPMLALSLALTLWAPMPLPYPMVDLNLGILFILA-LSSLTVYSIL 123
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
+ +S + YA IGA RA+ ++ +V LG ++ + G F T++ Q W IF
Sbjct: 124 GSGWASNSKYALIGALRAVAQTISYEVSLGLILLGTIIFIGGF-TFQTFNVAQESVWLIF 182
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFA 230
P A + + A + PFD+ E+ G VE+ GG + ++A L
Sbjct: 183 --PAWPLAAMWYVSTFAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL-ISTIFPRFTIDQAA 289
TL + +F+G + +P+ L + L+ + A+L +A L + +PRF DQ
Sbjct: 241 NTL-SATLFMGAS-----HAPLYPELTAIN--LMTKAALLSIAFLWVRASYPRFRYDQLM 292
Query: 290 KFYWK 294
WK
Sbjct: 293 HLIWK 297
>gb|AAF66629.1| (AF142999) NADH dehydrogenase subunit 1 [Pteronotus quadridens]
Length = 300
Score = 73.4 bits (177), Expect = 3e-12
Identities = 70/299 (23%), Positives = 132/299 (43%), Gaps = 15/299 (5%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP--IYQPIIDTIKLFGKK--E 56
++ ++ + ILL F+ + I+ + R + P + QPI D +KLF K+
Sbjct: 3 LINLLSXIVPILLAVAFLTLIXRXILGYMXLRKGPNVVGPYGLLQPIADAVKLFTKEPLR 62
Query: 57 NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAM 115
+T + F I L T+ M+IPL L +L + + + I+++
Sbjct: 63 PLTSSIAM-FIIAPILALTLALTMWIPLPMPHPLINMNLSVLFMLAMSSLAVYSILWSGW 121
Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
+S + YA IGA RA+ ++ +V L ++++ G+++ +++AQ+ W I +P
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSYTLSTLIIAQECM-WLI--IPA 178
Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
A+ + I A + PFD+ E+ G VE+ G + + +
Sbjct: 179 WPLAMMWFISTLAETNRAPFDLTGGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALT 238
Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+ +FLG +++PI+ L +IK + + + I PRF DQ + WK
Sbjct: 239 TILFLG-----AYNNPIMPELCPTN-FMIKTMLLTMSFLWIRASSPRFRYDQLLRLLWK 291
>gi|5835220 NADH dehydrogenase subunit 1 [Protopterus dolloi]
>gi|2147753|pir||S68128 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Protopterus dolloi mitochondrion
>gi|1161204|gb|AAC38021.1| (L42813) NADH dehydrogenase
subunit 1 [Protopterus dolloi]
Length = 322
Score = 73.0 bits (176), Expect = 4e-12
Identities = 72/301 (23%), Positives = 125/301 (40%), Gaps = 17/301 (5%)
Query: 2 LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK 55
L I N+++ ++ + RK+ + R GP + PI D +KLF K+
Sbjct: 4 LPTITNSLMYIVPILLAVAFLTLVERKIIGYMQHRKGPNVVGPYGLLHPIADGVKLFIKE 63
Query: 56 E-NVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMFA 113
T F + L T+ L++ PL + L+ I + + + I+ +
Sbjct: 64 PVRPTASSTTLFILAPTLALTLALLIWTPLPMPFPMANVNLTLLFIMAVSSLSVYSILTS 123
Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHL 173
+S + YA IGA RA+ ++ +V LG ++A + G FS Q+ W I +
Sbjct: 124 GWASNSKYALIGALRAIAQTISYEVSLGLILLAAIIFMGNFSMLTFSTGQEAI-WLI--I 180
Query: 174 PLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETL 233
P A + + A + PFD+ E++ G VE+ G L + +
Sbjct: 181 PAWPLATMWYVSTLAETNRSPFDLTEGESELASGFNVEYAGGPLASFYLAEYANIMLMNT 240
Query: 234 FFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
IFLG ++ + +L + T +L+ K A+ V + + +PRF DQ W
Sbjct: 241 ISVIIFLGDSL-----NLLLPEMMT-SLLMFKTTALSLVFLWVRASYPRFRYDQLMHLIW 294
Query: 294 K 294
K
Sbjct: 295 K 295
>sp|O78704|NU1M_MACEU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399747|dbj|BAA32113.1|
(AB011221) NADH dehydrogenase subunit 1 [Macropus
eugenii]
Length = 318
Score = 72.6 bits (175), Expect = 6e-12
Identities = 73/298 (24%), Positives = 131/298 (43%), Gaps = 17/298 (5%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKENV 58
++N +L ++ + RK + R GP I QP+ D IKLF K+
Sbjct: 3 VINLLLYIIPILLAVAFLTLVERKDLGYMQFRKGPNIVGPYGLLQPVADGIKLFTKEPLR 62
Query: 59 THGVIFDFGIVFALGATILA-LMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMS 116
F+ I+ + A LA ++ PL L L+ I L + + I+++ +
Sbjct: 63 PLTSSFNMFIIAPILALTLARTIWTPLPMPHTLIDLNLGLLFILSLSGLSVYSILWSGWA 122
Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
S + YA IGA RA+ ++ +V L ++++ G+F+ +++ Q+ + PL
Sbjct: 123 SNSKYALIGALRAVAQTISYEVTLAIILLSIMLINGSFTLKNLLITQENMWLIVSTWPL- 181
Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
A+ + I A + PFD+ E+ G VE+ + + + A +
Sbjct: 182 --AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIIAMNAMTA 239
Query: 237 NIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+FLG ++ FS L+TL+ ++K L + F+ + I +PRF DQ WK
Sbjct: 240 ILFLGSSLNHNFSQ--LSTLS----FMLKTLFLTFMFLWIRASYPRFRYDQLMYLLWK 291
>sp|O78712|NU1M_SMIMA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3401929|dbj|BAA32121.1|
(AB011229) NADH dehydrogenase subunit 1 [Sminthopsis
macroura]
Length = 318
Score = 72.6 bits (175), Expect = 6e-12
Identities = 76/302 (25%), Positives = 131/302 (43%), Gaps = 23/302 (7%)
Query: 2 LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK 55
L +++ I ILL F+ I RKV + R GP I QP D +KLF K+
Sbjct: 4 LNLLLYIIPILLAVAFLTL----IERKVLGYMQFRKGPNIVGPYGLLQPFADAVKLFTKE 59
Query: 56 --ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMF 112
+T ++ F + L +I ++ PL + L L+ I L + + I++
Sbjct: 60 PLRPLTSSILM-FILAPILALSIALTIWTPLPMPNTLLDLNLGLLFILSLSGLSVYSILW 118
Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFH 172
+ +S + YA IGA RA+ ++ +V L ++++ G+F+ + Q+ W +
Sbjct: 119 SGWASNSKYALIGALRAVAQTISYEVSLAIILLSVMLINGSFTLKTLSTTQE--NWWLIT 176
Query: 173 LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAET 232
LA + Y I A + PFD+ E+ G VE+ + + + A
Sbjct: 177 TTWPLAMMWY-ISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIIAMN 235
Query: 233 LFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFY 292
+ +FLG ++ T LN + T+ +L K L + + + +PRF DQ
Sbjct: 236 AITTILFLGSSLTTN-----LNHIDTISFML-KTLLLTMAFLWVRASYPRFRYDQLMHLL 289
Query: 293 WK 294
WK
Sbjct: 290 WK 291
>gb|AAF66624.1| (AF142994) NADH dehydrogenase subunit 1 [Noctilio leporinus]
Length = 318
Score = 72.6 bits (175), Expect = 6e-12
Identities = 77/305 (25%), Positives = 133/305 (43%), Gaps = 30/305 (9%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
+L +I+ +L + + T RKV + R GP + QPI D +KLF K
Sbjct: 6 LLTMIIPILLAVAFLTLTE-------RKVLGYMQLRKGPNVVGPYGLLQPIADAVKLFTK 58
Query: 55 K--ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLG--- 109
+ + +T V F I L T+ M+ PL + L + I F+L + LG
Sbjct: 59 EPLQPMTSSVTM-FIIAPILALTLALTMWTPLPMPNPLINMN--LGILFMLAMSSLGVYS 115
Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
I+++ +S + YA IGA RA+ ++ +V L ++++ G+F T + Q W
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSF-TLSTLNTTQNFIWL 174
Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF 229
I +P A+ + I A + PFD+ E+ G VE+ G + + +
Sbjct: 175 I--IPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANII 232
Query: 230 AETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAA 289
+ +FLG ++ P++ L L ++K L + + + + +PRF DQ
Sbjct: 233 MMNALTTILFLG-----AYNHPVMPELYALN-FMMKTLLLTMLFLWVRASYPRFRYDQLM 286
Query: 290 KFYWK 294
WK
Sbjct: 287 HLLWK 291
>gb|AAF66630.1| (AF143000) NADH dehydrogenase subunit 1 [Mormoops blainvillii]
Length = 306
Score = 72.6 bits (175), Expect = 6e-12
Identities = 70/300 (23%), Positives = 133/300 (44%), Gaps = 21/300 (7%)
Query: 5 IVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKK-- 55
I+N +L+++ + F+ +I RK+ + R GP + QPI D +KLF K+
Sbjct: 3 IIN-LLLMIVPILLAVAFLTLIERKILGYMQLRKGPNVVGPYGLLQPIADAVKLFVKEPL 61
Query: 56 ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAA 114
+T + F I L T+ M++PL L +L + + + I++
Sbjct: 62 RPLTSSITM-FIIAPILALTLALTMWVPLPMPHPLINMNLSVLFMLAMSSLAVYAILWXG 120
Query: 115 MSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLP 174
+S + YA IGA RA+ ++ +V L ++++ G+++ +++ Q+ + W IF P
Sbjct: 121 WASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSYTLSTLIITQE-YMWLIF--P 177
Query: 175 LLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLF 234
A+ + I A + PFD+ E+ G VE+ G + + +
Sbjct: 178 AWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNAL 237
Query: 235 FSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+ +F+G +++ +L L T +IK + + + +PRF DQ WK
Sbjct: 238 TTILFMGA-----YNNSLLPELYTTN-FMIKTSLLTMSFLWVRASYPRFRYDQLMHLLWK 291
>gi|5835140 NADH dehydrogenase subunit 1 [Pan paniscus]
>gi|6045121|dbj|BAA85294.1| (D38116) NADH dehydrogenase
subunit 1 [Pan paniscus]
Length = 318
Score = 72.2 bits (174), Expect = 8e-12
Identities = 77/307 (25%), Positives = 133/307 (43%), Gaps = 24/307 (7%)
Query: 9 ILILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-NVTH 60
+L+L+ + F+ + RK+ + R GP I QP D +KLF K+ +
Sbjct: 6 LLLLIVPVLIAMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPST 65
Query: 61 GVIFDFGIVFALGATILALMFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFAAMSSGN 119
I + L TI L++ PL + L L+ I + + I+++ +S +
Sbjct: 66 STITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSILWSGWASNS 125
Query: 120 PYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAA 179
YA IGA RA+ ++ +V L +++ G+F+ ++ Q+ H W I LP A
Sbjct: 126 NYALIGALRAVAQTISYEVTLAIILLSTLLMSGSFNLSTLITTQE-HLWLI--LPTWPLA 182
Query: 180 IAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSNIF 239
+ + I A + PFD+ E+ G +E+ + + + + + IF
Sbjct: 183 MMWFISTLAETNRTPFDLTEGESELVSGFNIEYAAGPFALFFMAEYMNIIMMNTLTATIF 242
Query: 240 LGGAVITTFS--SPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK--W 295
LG TT++ SP L T + K L + + + I T +PR DQ WK
Sbjct: 243 LG----TTYNTHSPELYTT----YFVTKALLLTSLFLWIRTTYPRLCYDQLMHLLWKNFL 294
Query: 296 PTIIAAL 302
P +A+L
Sbjct: 295 PLTLASL 301
>gb|AAF61225.1|AF234893_1 (AF234893) NADH dehydrogenase I [Haemulon plumieri]
>gi|7341271|gb|AAF61227.1|AF234895_1 (AF234895) NADH
dehydrogenase I [Haemulon plumieri]
>gi|7341277|gb|AAF61230.1|AF234898_1 (AF234898) NADH
dehydrogenase I [Haemulon plumieri]
Length = 324
Score = 72.2 bits (174), Expect = 8e-12
Identities = 80/305 (26%), Positives = 138/305 (45%), Gaps = 26/305 (8%)
Query: 4 VIVNAI--LILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
VI++ I L L+ + F+ ++ RKV + R GP + QPI D +KLF K
Sbjct: 5 VIIHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64
Query: 55 ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
+ + + ++F + AL + +PL V G L ++ L + + I+
Sbjct: 65 EPVRPSTSSPLLFLLAPMLALSLALTLWAPMPLPYPMVDLNLGILFILA-LSSLTVYSIL 123
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
+ +S + YA IGA RA+ ++ +V LG ++ + G F+ +AQ+ W I
Sbjct: 124 GSGWASNSKYALIGALRAVAQTISYEVSLGLILLGTIIFTGGFTLQTFNVAQE-SVWLI- 181
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFA 230
LP A + + A + PFD+ E+ G VE+ GG + ++A L
Sbjct: 182 -LPAWPLAAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL-ISTIFPRFTIDQAA 289
TL + +F+G + +P+ L + L+ + A+L +A L + +PRF DQ
Sbjct: 241 NTL-SATLFMGAS-----HAPLYPELTAIN--LMTKAALLSIAFLWVRASYPRFRYDQLM 292
Query: 290 KFYWK 294
WK
Sbjct: 293 HLIWK 297
>gi|9653260 NADH dehydrogenase subunit 1 [Physeter catodon]
>gi|9368963|emb|CAB98270.1| (AJ277029) NADH
dehydrogenase 1 [Physeter catodon]
Length = 318
Score = 72.2 bits (174), Expect = 8e-12
Identities = 74/302 (24%), Positives = 130/302 (42%), Gaps = 21/302 (6%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
M+ +++ + ILL F+ + RK + R GP I QP D IKLF K
Sbjct: 3 MINILMLTLPILLAVAFLTL----VERKTLGYMQLRKGPNIVGPHGLLQPFADAIKLFTK 58
Query: 55 KENVTHGVIFDFGIVFALGATILAL-MFIPLGS-ISVLRAYGDLILITFLLEIPMLGIMF 112
+ I+ + A ILAL M+ PL ++ + ++ + + + + I++
Sbjct: 59 EPLRPATSSTTMFIIAPMLALILALTMWSPLPMPYPLINMHLGILFMLAMSSLTVYSILW 118
Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFH 172
+ +S + YA IGA RA+ ++ +V L ++++ G+F T + Q W +
Sbjct: 119 SGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMSGSF-TLSALATTQEQLWLL-- 175
Query: 173 LPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAET 232
LPL + + I A + PFD+ E+ G VE+ + + +
Sbjct: 176 LPLWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMMN 235
Query: 233 LFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFY 292
+ + +FLG T+ +P L T L++K L + + I +PRF DQ
Sbjct: 236 MLSTILFLG-----TYHNPYTPELHTTN-LILKTLLLTMSFLWIRASYPRFRYDQLMHLL 289
Query: 293 WK 294
WK
Sbjct: 290 WK 291
>gb|AAC28344.1| (AF065103) NADH dehydrogenase subunit 1 [Nyctalus noctula]
>gi|3372826|gb|AAC28346.1| (AF065105) NADH dehydrogenase
subunit 1 [Nyctalus noctula] >gi|3372829|gb|AAC28347.1|
(AF065106) NADH dehydrogenase subunit 1 [Nyctalus
noctula] >gi|3372832|gb|AAC28348.1| (AF065107) NADH
dehydrogenase subunit 1 [Nyctalus noctula]
Length = 301
Score = 71.8 bits (173), Expect = 1e-11
Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 23/299 (7%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK--E 56
+ I ILL F+ + RKV + R GP I QPI D +KLF K+ +
Sbjct: 1 LTTIIPILLAVAFLTLLE----RKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFIKEPLQ 56
Query: 57 NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAM 115
+T + F I L T+ +M+IPL L IL L + + I+++
Sbjct: 57 PLTSSLTL-FIIAPTLALTLALMMWIPLPMPHPLINMNLSILFMLALSSLAVYAILWSGW 115
Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
+S + YA IGA RA+ ++ +V L I+++ G+F+ ++ Q+ + W I +P
Sbjct: 116 ASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSFTLSTLITTQE-YTWLI--MPS 172
Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
A+ + I A + PFD+ E+ G VE+ G + + +
Sbjct: 173 WPLAMMWFISTIAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALT 232
Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+FLG +TF P + T ++K L + I +PRF DQ WK
Sbjct: 233 IILFLGAYNNSTF--PEMYT----ANFMLKALLFTTFFLWIRASYPRFRYDQLMHLLWK 285
>sp|O80003|NUM1_NYCNO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3372823|gb|AAC28345.1|
(AF065104) NADH dehydrogenase subunit 1 [Nyctalus
noctula] >gi|3372835|gb|AAC28349.1| (AF065108) NADH
dehydrogenase subunit 1 [Nyctalus noctula]
>gi|3372838|gb|AAC28350.1| (AF065109) NADH dehydrogenase
subunit 1 [Nyctalus noctula]
Length = 301
Score = 71.8 bits (173), Expect = 1e-11
Identities = 79/299 (26%), Positives = 128/299 (42%), Gaps = 23/299 (7%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK--E 56
+ I ILL F+ + RKV + R GP I QPI D +KLF K+ +
Sbjct: 1 LTTIIPILLAVAFLTLLE----RKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFIKEPLQ 56
Query: 57 NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIMFAAM 115
+T + F I L T+ +M+IPL L IL L + + I+++
Sbjct: 57 PLTSSLAL-FIIAPTLALTLALMMWIPLPMPHPLINMNLSILFMLALSSLAVYAILWSGW 115
Query: 116 SSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
+S + YA IGA RA+ ++ +V L I+++ G+F+ ++ Q+ + W I +P
Sbjct: 116 ASNSKYALIGALRAVAQTISYEVTLAIIILSILLMNGSFTLSTLITTQE-YTWLI--MPS 172
Query: 176 LLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFF 235
A+ + I A + PFD+ E+ G VE+ G + + +
Sbjct: 173 WPLAMMWFISTIAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNALT 232
Query: 236 SNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+FLG +TF P + T ++K L + I +PRF DQ WK
Sbjct: 233 IILFLGAYNNSTF--PEMYT----ANFMLKALLFTTFFLWIRASYPRFRYDQLMHLLWK 285
>sp|O78707|NU1M_TRIVU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3401919|dbj|BAA32116.1|
(AB011224) NADH dehydrogenase subunit 1 [Trichosurus
vulpecula]
Length = 318
Score = 71.8 bits (173), Expect = 1e-11
Identities = 71/298 (23%), Positives = 128/298 (42%), Gaps = 17/298 (5%)
Query: 5 IVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKKE-N 57
I+N +L ++ + RK + R GP I QPI D +KLF K+
Sbjct: 3 IINLLLYIIPILLAVAFLTLVERKALGYMQFRKGPNIVGPYGLLQPIADAVKLFTKEPLR 62
Query: 58 VTHGVIFDFGIVFALGATILALMFIPLGSI-SVLRAYGDLILITFLLEIPMLGIMFAAMS 116
I F I L T+ ++ PL S++ L+ I L + + I+++ +
Sbjct: 63 PLTSSISMFIIAPILALTLAFTIWTPLPMPHSLIDLNLGLLFILALSGLSVYSILWSGWA 122
Query: 117 SGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLL 176
S YA +GA RA+ ++ +V L ++++ G+F+ +++ Q+ + PL
Sbjct: 123 SNTKYALMGALRAVAQTISYEVTLAIILLSIMLINGSFTLKNLIITQENMWLIMTTWPL- 181
Query: 177 LAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFS 236
+ + I A + PFD+ E+ G VE+ + + + A +
Sbjct: 182 --TMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIMAMNAMTT 239
Query: 237 NIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
+FLG ++ F+ LNTL+ +IK + F+ + + +PRF DQ WK
Sbjct: 240 ILFLGSSINHNFTH--LNTLS----FVIKTALLTFMFLWVRASYPRFRYDQLMYLLWK 291
>gi|7374120 NADH dehydrogenase subunit 1 [Penaeus monodon]
>gi|7243617|gb|AAF43378.1|AF217843_7 (AF217843) NADH
dehydrogenase subunit 1 [Penaeus monodon]
Length = 312
Score = 71.8 bits (173), Expect = 1e-11
Identities = 73/305 (23%), Positives = 130/305 (41%), Gaps = 29/305 (9%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFG 53
M ++V L+L+ VG F+ ++ RK+ + R GP + QP D +KLF
Sbjct: 1 MTLIMVINYLLLIICVLVGVAFVTLLERKILGYIQIRKGPNKVGFMGLLQPFADAVKLFT 60
Query: 54 KKENV---THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGI 110
K++ + ++ + + F VF+L +++ + +P + ++ + + +
Sbjct: 61 KEQTLPVMSNFLPYYFSPVFSLFVSLIVWLVMPY-ELGLMNFTMSTLFFLCCTSLGVYTT 119
Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSI 170
M A SS + Y+ +G+ RA+ ++ +V L +++ G F + Q+
Sbjct: 120 MSAGWSSNSKYSLLGSLRAVAQTISYEVSLALILLSFIFLVGGFDLCLFSLYQRDVWLLW 179
Query: 171 FHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFG-GKYLGILQVQHAIGLF 229
F PL L A + A + PFD E+ G E+ G + I ++A LF
Sbjct: 180 FTFPLSLIWFASCL---AETNRTPFDFAEGESELVSGFNTEYSSGGFALIFMAEYASILF 236
Query: 230 AETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAA 289
LF S IFLGG +I+ F +K + V F + + PRF D+
Sbjct: 237 MSMLF-SLIFLGGDLISPF-------------YYLKLVMVAFAFVWVRGTLPRFRYDKLM 282
Query: 290 KFYWK 294
WK
Sbjct: 283 YLAWK 287
>gb|AAF66627.1| (AF142997) NADH dehydrogenase subunit 1 [Pteronotus macleayii]
Length = 293
Score = 71.8 bits (173), Expect = 1e-11
Identities = 71/303 (23%), Positives = 132/303 (43%), Gaps = 26/303 (8%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
+L +IV +L + + T V RK+ + R GP + QPI D +KLF K
Sbjct: 6 LLSMIVPVLLAVAFLTLVE-------RKILGYMQLRKGPNVVGPHGLLQPIADAVKLFTK 58
Query: 55 K--ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLE-IPMLGIM 111
+ +T + F I L T+ M+IPL L +L + + + I+
Sbjct: 59 EPLRPLTSSIAM-FIIAPILALTLALTMWIPLPMPHPLINMNLSVLFMLAMSSLAVYSIL 117
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
++ +S + YA IGA RA+ ++ +V L ++++ G+++ +++ Q+ + W ++
Sbjct: 118 WSGWASXSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSYTLSTLIITQE-YMWLMY 176
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
P A+ + I A + PFD+ E+ G VE+ + + +
Sbjct: 177 --PAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYSXGXFALFFLAEYANIXMM 234
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
+ +FL +++PI+ L T +IK + + + I +PRF DQ
Sbjct: 235 NSLTTXLFL-----XAYNNPIMPELYTTN-FMIKTMLLTMSFLWIRASYPRFRYDQLMHL 288
Query: 292 YWK 294
WK
Sbjct: 289 LWK 291
>emb|CAC08255.1| (AL392146) NADH dehydrogenase subunit [Streptomyces coelicolor]
Length = 322
Score = 71.8 bits (173), Expect = 1e-11
Identities = 81/309 (26%), Positives = 134/309 (43%), Gaps = 34/309 (11%)
Query: 2 LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY-------QPIIDTIKLFGK 54
LR++V ++ L + VG KV A + R+GP Q + D +K F +
Sbjct: 9 LRLLVVFVVFLTFPLIVG----QTEHKVMAHMQGRLGPMYAGGFHGWAQLVADGVK-FAQ 63
Query: 55 KENVTHGV----IFDFGIVFALGATILALMFIPLGSISVLRAYGDLI-----LITFLLEI 105
KE+V IF AL +L L+ IP+G A G ++ + ++ +
Sbjct: 64 KEDVVPADADRRIFQLAPAVALLPYLLVLLAIPVGPGE--GAVGQVVDAGVFFVLAVMGV 121
Query: 106 PMLGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQV 165
+LG + A SS N ++ +G R LLA ++P+ ++A GT S I+ A +
Sbjct: 122 GVLGSLMAGWSSANKFSLLGGLRTAAQLLAYELPMLLTAASVAMAAGTVSLVGILDAFE- 180
Query: 166 HGWSIFHLP-LLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQH 224
W + LP ++ AI + + A + PFD+ +A EI G E+ G + +
Sbjct: 181 --W--WWLPWQIVGAIVFFVAGLAELQRPPFDMPVADSEIIFGAYTEYTGLRFALFLLAE 236
Query: 225 AIGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFT 284
G+ + +FLGG + + L + T L+K + FV I + +PR
Sbjct: 237 YAGIVVLCGLTTVLFLGG-WHGPWGADGLGWVWT----LLKAAVLAFVVIWLRVTYPRLR 291
Query: 285 IDQAAKFYW 293
DQ K W
Sbjct: 292 EDQLQKLSW 300
>gb|AAK40660.1| NADH dehydrogenase subunit H (NuoH) [Sulfolobus solfataricus]
Length = 352
Score = 71.4 bits (172), Expect = 1e-11
Identities = 81/339 (23%), Positives = 141/339 (40%), Gaps = 54/339 (15%)
Query: 2 LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGP--------PIYQPIIDTIKLFG 53
L VI ++ L V F RK A V R GP I Q D IK
Sbjct: 18 LTVIFPGLIFTLIFLLVTIWFE---RKAAAIVQLRYGPYYASKRLGGILQLFADAIKFVF 74
Query: 54 KKENVTHGV---IFDFGIVFALGATILALMFIPLGSI----SVLRAYGDL---------I 97
+ + +GV ++ V L L + IP+ +I S+L Y + I
Sbjct: 75 SEIIIPNGVNQTLYAISPVLVLIFAFLPMALIPISTIPTQGSILSVYHGIFYDTQIHQGI 134
Query: 98 LITFLLEIPMLGIM-----------FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVA 146
L+ + +E ++GI+ F A ++ N +A +G+ R ++ V + + +A
Sbjct: 135 LVPYFIEYNLIGIIALESLYPILVIFLAWNTNNRFAIVGSIREAYLSVSYDVLIIISTLA 194
Query: 147 LAEYYGTFSTYEIVMAQQVHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISL 206
L Y T +IV + + G+ + +AA + + + + PF+I+ A E+ +
Sbjct: 195 LGLEYHTLDVAKIVTSG-IPGF----IANPIAAFVFLVAMLIGSSRFPFEIVEAETELVI 249
Query: 207 GPMVEFGGKYLGILQVQHAIGLFAETLFFSNIFLGGAV-ITTFSSPILNTLATLGVLLIK 265
GP E+ G + + + F ++FLGG + T F I + K
Sbjct: 250 GPYTEYSGFLFVLTMAGSYVANLVYAILFVDLFLGGWLPFTGFVGAIFT--------VFK 301
Query: 266 QLAVLFVAILISTIFPRFTIDQAAKFYWKW--PTIIAAL 302
V+F A+ + ++ R+ IDQA + WK+ P +A+L
Sbjct: 302 AAIVVFFAVFLRAVYGRYRIDQALRGSWKYFFPLALASL 340
>emb|CAA70708.1| (Y09524) NADH dehydrogenase subunit 1 [Branchiostoma lanceolatum]
Length = 313
Score = 71.4 bits (172), Expect = 1e-11
Identities = 86/308 (27%), Positives = 137/308 (43%), Gaps = 39/308 (12%)
Query: 4 VIVNAILILLY--ATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
+I++ I I LY + F+ + RKV V R GP + QPI D +KLF K
Sbjct: 1 MILSVIHIFLYFVPVLLAVAFLTLTERKVIGYVQLRKGPNVVGPYGLLQPIADGVKLFIK 60
Query: 55 ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDL-ILITFLLEIPMLG- 109
K + ++ +F F + AL +L M +PL + A+ +L + F+L IP L
Sbjct: 61 EPIKPSSSNPSVFFFAPMLALILALLLWMPVPL-----MDAFIELNFAVLFVLAIPSLSV 115
Query: 110 --IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
IM + SS + YA +GA RA+ +++ +V LG I++L G F+ + AQ+
Sbjct: 116 YSIMASGWSSNSKYALLGALRAVAQMVSYEVSLGLIILSLICLVGGFNLAQFFSAQEEVM 175
Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAI 226
+ PL I + I A + PFD+ E+ G VE+ GG + ++A
Sbjct: 176 LMLSCWPL---GIMWFISTVAETNRSPFDLTEGESELVSGFNVEYSGGPFALFFLAEYA- 231
Query: 227 GLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
+ F N+ L + +L +G+ LA L++ S +P F D
Sbjct: 232 -----NILFMNV-LSALLFLAAHFSLLGVAVKVGL-----LAGLYLWFRAS--YPSFRYD 278
Query: 287 QAAKFYWK 294
Q WK
Sbjct: 279 QLMHLAWK 286
>gi|5835807 NADH dehydrogenase subunit 1 [Gadus morhua]
>gi|2499230|sp|P55779|NU1M_GADMO NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431936|pir||T11820 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Atlantic cod mitochondrion >gi|3805890|emb|CAA68106.1|
(X99772) NADH dehydrogenase 1 [Gadus morhua]
Length = 323
Score = 71.4 bits (172), Expect = 1e-11
Identities = 81/309 (26%), Positives = 136/309 (43%), Gaps = 28/309 (9%)
Query: 1 MLRVIVNAIL---ILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIK 50
M ++V+ IL I + + F+ +I RKV + R GP I QPI D +K
Sbjct: 1 MTNIVVSYILNPLIYMVPVLLAVAFLTLIERKVLGYMQLRKGPNIVGPYGLLQPIADGVK 60
Query: 51 LFGK---KENVTHGVIFDFGIV-FALGATILALMFIPLGSISVLRAYGDLILITFLLEIP 106
LF K + + + +F ++ L T+ A M +P V ++ + L +
Sbjct: 61 LFIKEPIRPSTSSPSLFVLPVLALTLALTLWAPMPMPF---PVADLNLSILFVLALSSLA 117
Query: 107 MLGIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVH 166
+ I+ + +S + YA +GA RA+ ++ +V LG ++++ + G F+ Q+
Sbjct: 118 VYSILGSGWASNSKYALVGALRAVAQTISYEVSLGLILLSVIIFSGGFTLQTFSTTQEAT 177
Query: 167 GWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHA 225
++ PL AA+ Y L+ + PFD+ E+ G VE+ GG + ++A
Sbjct: 178 WLALPAWPL--AAMWYISTLEET-NRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYA 234
Query: 226 IGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTI 285
L TL + +FLG + TT TL T LL V + + +PRF
Sbjct: 235 NILLMNTLS-AVLFLGSSYSTTMPEFTSLTLMTKAALLS------MVFLWVRASYPRFRY 287
Query: 286 DQAAKFYWK 294
DQ WK
Sbjct: 288 DQLMHLVWK 296
>emb|CAA27295.1| (X03660) NADH hydrogenase subunit I (aa 1-359) [Acremonium
chrysogenum] >gi|7544703|gb|AAA32171.2| (M24233) NADH
dehydrogenase [Acremonium chrysogenum]
Length = 359
Score = 71.4 bits (172), Expect = 1e-11
Identities = 83/331 (25%), Positives = 134/331 (40%), Gaps = 45/331 (13%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
M+ ++ N IL+L V ++ + RK A + RR+GP + Q D +KL K
Sbjct: 7 MISILENLILMLPALLVVAYVTVAE-RKTMASMQRRLGPNAVGYYGLLQAFADALKLILK 65
Query: 55 K---ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLIL-ITFLLEIPML-- 108
+ + ++F G + L +L IP G L D+ L I F+L + L
Sbjct: 66 EYVAPTQANIILFFLGPIVTLVFALLGYAVIPYGPGLSL---SDMELGILFMLAVSSLAT 122
Query: 109 -GIMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
GI+ A S+ + YA +G+ R+ L++ ++ L ++ + + + V Q++
Sbjct: 123 YGILLAGWSANSKYAFLGSLRSTAQLISYELVLSSVLLIIILITNSLNLNLNVQFQKII- 181
Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
W LPLL I + I A + PFD+ A E+ G M E +
Sbjct: 182 W--LALPLLCILIIFFIGSVAETNRAPFDLAEAESELVSGFMTEHAAVIFVFFFLAEYAS 239
Query: 228 LFAETLFFSNIFLGGAVIT-------------------------TFSSPILNTLATLGVL 262
+ + S +FLGG +I +S N L T L
Sbjct: 240 IVLMCILTSILFLGGYLIEFDYSYLLYNYYYFDIGSSYSLMREELLNSTSFNGLLTSITL 299
Query: 263 LIKQLAVLFVAILISTIFPRFTIDQAAKFYW 293
IK A++F+ I + FPR DQ F W
Sbjct: 300 GIKTSAMVFIFIWVRASFPRIRFDQLMSFCW 330
>gi|5835514 NADH dehydrogenase subunit 1 [Branchiostoma lanceolatum]
>gi|5881426|ref|NP_007768.1| NADH dehydrogenase subunit
1 [Branchiostoma floridae]
>gi|8488994|sp|O21000|NU1M_BRALA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431899|pir||B71390 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - common
lancelet mitochondrion >gi|2655392|gb|AAB88002.1|
(AF098298) NADH dehydrogenase subunit 1 [Branchiostoma
floridae] >gi|3292991|emb|CAA76247.1| (Y16474) NADH
dehydrogenase subunit 1 [Branchiostoma lanceolatum]
Length = 313
Score = 71.4 bits (172), Expect = 1e-11
Identities = 81/304 (26%), Positives = 134/304 (43%), Gaps = 31/304 (10%)
Query: 4 VIVNAILILLY--ATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
+I++ I I LY + F+ + RKV V R GP + QPI D +KLF K
Sbjct: 1 MILSVIHIFLYFVPVLLAVAFLTLTERKVIGYVQLRKGPNVVGPYGLLQPIADGVKLFIK 60
Query: 55 ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
K + ++ +F F + AL +L M +PL + + L ++ + + + IM
Sbjct: 61 EPIKPSSSNPSVFFFAPMLALILALLLWMPVPLMDAFIELNFAVLFVLA-ISSLSVYSIM 119
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
+ SS + YA +GA RA+ +++ +V LG I++L G F+ + AQ+ +
Sbjct: 120 ASGWSSNSKYALLGALRAVAQMVSYEVSLGLIILSLICLVGGFNLAQFFSAQEEVMLMLS 179
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGLFA 230
PL I + I A + PFD+ E+ G VE+ GG + ++A
Sbjct: 180 CWPL---GIMWFISTVAETNRSPFDLTEGESELVSGFNVEYSGGPFALFFLAEYA----- 231
Query: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAK 290
+ F N+ L + +L +G+ LA L++ S +PRF DQ
Sbjct: 232 -NILFMNV-LSALLFLAAHFSLLGVAVKVGL-----LAGLYLWFRAS--YPRFRYDQLMH 282
Query: 291 FYWK 294
WK
Sbjct: 283 LAWK 286
>sp|O78702|NU1M_MANTE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399743|dbj|BAA32111.1|
(AB011219) NADH dehydrogenase subunit 1 [Manis
tetradactyla]
Length = 318
Score = 71.4 bits (172), Expect = 1e-11
Identities = 72/303 (23%), Positives = 131/303 (42%), Gaps = 26/303 (8%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
+L I+ +L + + T RKV + R GP I QPI D +KLF K
Sbjct: 6 LLTTIIPVLLAVAFLTLAE-------RKVLGYMQLRKGPNIVGPWGLLQPIADAVKLFTK 58
Query: 55 K--ENVTHGVI-FDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
+ +T ++ F + AL + M +P+ + G L ++ + + + I+
Sbjct: 59 EPLRPLTSSIMMFIMAPILALALALTMWMPLPMPYPLINMNLGVLFMLA-MSSLAVYSIL 117
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
++ +S + YA IGA RA+ ++ +V L ++++ G+F+ +++ Q+ W +
Sbjct: 118 WSGWASNSKYALIGANRAVAQTISYEVTLAIILLSVLLMSGSFTLSTLIITQE-KLWLL- 175
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
+P A+ + I A + PFD+ E+ G VE+ + + +
Sbjct: 176 -VPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMM 234
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
+ +FLGG +P L T + +LI +A L+ I +PRF DQ
Sbjct: 235 NALSTTLFLGG--FHNSYNPSLYTTNFIMKVLILTMAFLW----IRASYPRFRYDQLMHL 288
Query: 292 YWK 294
WK
Sbjct: 289 LWK 291
>gb|AAF78602.1|AF260826_1 (AF260826) NADH subunit 1 [Cochliomyia hominivorax]
Length = 312
Score = 71.4 bits (172), Expect = 1e-11
Identities = 78/307 (25%), Positives = 137/307 (44%), Gaps = 35/307 (11%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
+L +I + +LI+ V F+ + + RKV + R GP I QP D IKLF K
Sbjct: 4 LLFIISSLLLIIFVLVSVAFLTL-LERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLFTK 62
Query: 55 KEN---VTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGI- 110
++ +++ + + F +F+L ++L M +P+ ++ + + + F L LG+
Sbjct: 63 EQTYPLLSNYISYYFSPIFSLFLSLLVWMCMPM----FVKLFSFNLGLLFFLCCTSLGVY 118
Query: 111 --MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
M A SS + YA +G RA+ ++ +V L +++ G ++ + Q+ W
Sbjct: 119 TVMIAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFIFLIGGYNML-MFYKYQMFIW 177
Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFG-GKYLGILQVQHAIG 227
+F + +A + + I L A + PFD E+ G VE+ G + I ++A
Sbjct: 178 FLF-IMFPMALVWFSISL-AETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYASI 235
Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
LF LF +FLG + + + IK V F+ I + PRF D+
Sbjct: 236 LFMSMLFC-VMFLGSDIFSF-------------LFYIKLTFVSFMFIWVRGTLPRFRYDK 281
Query: 288 AAKFYWK 294
WK
Sbjct: 282 LMYLAWK 288
>emb|CAA23994.1| (V00650) URF 1 [Emericella nidulans]
Length = 352
Score = 71.0 bits (171), Expect = 2e-11
Identities = 85/340 (25%), Positives = 136/340 (40%), Gaps = 61/340 (17%)
Query: 2 LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGKK 55
L VIV A+L + + T RK A + RR+GP + Q D +KL K+
Sbjct: 11 LLVIVPALLSVAFVTVAE-------RKTMASMQRRLGPNAVGYYGLLQAFADALKLLLKE 63
Query: 56 ---ENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPML---G 109
+ ++F G + L ++L + IP GS + Y + I ++L + L G
Sbjct: 64 YIAPTQANILLFFLGPIITLIFSLLGYLVIPFGSGLDISDYN--LGILYMLAVSSLATYG 121
Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
I+ A S+ + YA +G+ R+ L++ ++ L I+ + G+ + I+ +Q+V
Sbjct: 122 ILLAGWSANSKYAFLGSLRSTAQLISYELILSSVILLVILLTGSLNIITIIESQRVVNLL 181
Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVE------------------ 211
PL L I A + PFD+ A E+ G M E
Sbjct: 182 FPLFPLFLVFFIGSI---AETNRAPFDLAEAESELVSGFMTEHSASIFVFFFLAEYASIV 238
Query: 212 ---------FGGKYLGILQVQHAIGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVL 262
F G YL I+ + + + + +N L + SSPI L
Sbjct: 239 LICILNSILFLGGYLSIIPLDFIVNILNLFVITNNTILFDIFVHISSSPIN--------L 290
Query: 263 LIKQLAVLFVAILISTIFPRFTIDQAAKFYWK--WPTIIA 300
+K ++FV I + FPR DQ W P IIA
Sbjct: 291 ALKTAFLIFVFIWVRASFPRIRFDQLMSVCWTVLLPIIIA 330
>gi|5835374 NADH dehydrogenase subunit 1 [Latimeria chalumnae]
>gi|3122437|sp|O03847|NU1M_LATCH NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431901|pir||A58892 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
coelacanth mitochondrion >gi|1916818|gb|AAC60318.1|
(U82228) NADH dehydrogenase subunit 1 [Latimeria
chalumnae]
Length = 323
Score = 71.0 bits (171), Expect = 2e-11
Identities = 82/308 (26%), Positives = 136/308 (43%), Gaps = 38/308 (12%)
Query: 2 LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK- 54
L VI+ +L + + T + RKV + R GP I QP+ D +KLF K
Sbjct: 12 LAVIIPILLAVAFLTLIE-------RKVLGYMQLRKGPNIVGPYGLLQPLADGLKLFIKE 64
Query: 55 --KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMF 112
+ + + ++F + AL + + +PL G L ++ + + + I+
Sbjct: 65 PVRPSTSSPLLFITTPMLALTMALTLWLPLPLPHPMTNLNLGMLFILA-ISSLTVYSILG 123
Query: 113 AAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYG-----TFSTYEIVMAQQVHG 167
+ +S YA IGA RA+ ++ +V LG ++A+ + G TF+T + + G
Sbjct: 124 SGWASNLKYALIGALRAVAQTISYEVSLGLILLAMIIFAGGFTLTTFNTSQETIWLLTPG 183
Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAI 226
W LAA+ Y L A + PFD+ E+ G VE+ GG + ++A
Sbjct: 184 WP-------LAAMWYISTL-AETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 235
Query: 227 GLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTID 286
L TL S I GA+ +PI L ++ L+IK A+ + + + +PRF D
Sbjct: 236 ILLMNTL--STILFMGAM----HNPITPELTSIN-LMIKASALSMLFLWVRASYPRFRYD 288
Query: 287 QAAKFYWK 294
Q WK
Sbjct: 289 QLMHLVWK 296
>gi|5835541 NADH dehydrogenase subunit 1 [Alligator mississippiensis]
>gi|6093544|sp|O47868|NU1M_ALLMI NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431951|pir||T11274 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1
[similarity] - American alligator mitochondrion
>gi|2916729|emb|CAA73561.1| (Y13113) NADH dehydrogenase
subunit 1 [Alligator mississippiensis]
>gi|3219515|gb|AAD09980.1| (AF069428) NADH dehydrogenase
subunit I [Alligator mississippiensis]
Length = 321
Score = 71.0 bits (171), Expect = 2e-11
Identities = 73/307 (23%), Positives = 129/307 (41%), Gaps = 30/307 (9%)
Query: 2 LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK 55
L ++ A+LI+ V F+ + RK+ + R GP I QP D +KL K+
Sbjct: 4 LTIVPPALLIISILMAVAFL-TALERKIMGHMQLRKGPNIVGPLGLLQPFADGLKLITKE 62
Query: 56 ENVTHGVIFDFGIVFALGATILAL-MFIPLGSISVLRAYG-DLILITFLLEIPMLGIMFA 113
+ I+ A +LAL M+ PL S L L+L+ + + + +++
Sbjct: 63 LTLPLLATPTLFILAPTAALMLALAMWSPLPMPSPLADLNLGLLLLLAMSSLMVYSFLWS 122
Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHL 173
SS + YA +GA RA+ ++ +V L ++++ G FS + + + Q+
Sbjct: 123 GWSSNSKYALMGAMRAVAQTISYEVTLAIIVLSIVLLSGGFSLHTLTVTQE--------- 173
Query: 174 PLLLAAIAYDIVLQ------AMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIG 227
PL LA + ++ A + PFD+ E+ G VE+ + +
Sbjct: 174 PLYLALATWPSMMMWYTSTLAETNRAPFDLTEGESELVSGFNVEYSASPFALFFLAEYAN 233
Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
+ + +FL + T P L T+A + L+ ++ L+V +PRF DQ
Sbjct: 234 IMLMNTLTTTLFLSPSTPTFL--PALFTIALMSKALLLTMSFLWVR----ASYPRFRYDQ 287
Query: 288 AAKFYWK 294
WK
Sbjct: 288 LMHLLWK 294
>gb|AAF61226.1|AF234894_1 (AF234894) NADH dehydrogenase I [Haemulon plumieri]
Length = 324
Score = 71.0 bits (171), Expect = 2e-11
Identities = 79/307 (25%), Positives = 139/307 (44%), Gaps = 30/307 (9%)
Query: 4 VIVNAI--LILLYATFVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
VI++ I L L+ + F+ ++ RKV + R GP + QPI D +KLF K
Sbjct: 5 VIIHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64
Query: 55 ---KENVTHGVIFDFG--IVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLG 109
+ + + ++F + +L T+ A M P + + ++ I L + +
Sbjct: 65 EPVRPSTSSPLLFLLAPMLALSLALTLWAPMPFPYPMVDLNLG---ILFILALSSLTVYS 121
Query: 110 IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWS 169
I+ + +S + YA IGA RA+ ++ +V LG ++ + G F+ +AQ+ W
Sbjct: 122 ILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLGTIIFTGGFTLQTFNVAQE-SVWL 180
Query: 170 IFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIGL 228
I LP A + + A + PFD+ E+ G VE+ GG + ++A L
Sbjct: 181 I--LPAWPLAAMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIL 238
Query: 229 FAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAIL-ISTIFPRFTIDQ 287
TL + +F+G + +P+ L + L+ + A+L +A L + +PRF DQ
Sbjct: 239 LMNTL-SATLFMGAS-----HAPLYPELTAIN--LMTKAALLSIAFLWVRASYPRFRYDQ 290
Query: 288 AAKFYWK 294
WK
Sbjct: 291 LMHLIWK 297
>gb|AAF81391.1|AF164590_2 (AF164590) NADH dehydrogenase subunit 1 [Bactrocera oleae]
Length = 343
Score = 71.0 bits (171), Expect = 2e-11
Identities = 73/307 (23%), Positives = 135/307 (43%), Gaps = 35/307 (11%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
+L VI IL++ V F+ + + RKV + R GP I QP D IKLF K
Sbjct: 4 ILSVIGGLILVICVLVSVAFLTL-LERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTK 62
Query: 55 KEN---VTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLG-- 109
++ +++ + + F +F+L +++A + IPL ++ + + + F L LG
Sbjct: 63 EQTYPLLSNYISYYFSPIFSLFLSLVAWLCIPL----FVKLFSFNLGLLFFLCCASLGVY 118
Query: 110 -IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
+M A SS + YA +G RA+ ++ +V + +++ G+++ + Q+ +
Sbjct: 119 TVMVAGWSSNSNYALLGGLRAVAQTISYEVSMALVLLSFVFLIGSYNILDFFYYQKFVWF 178
Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAIG 227
+ P+ L + + A + PFD E+ G +E+ G + I ++A
Sbjct: 179 LVILFPMKL---VWFCICLAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFMAEYAKI 235
Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
LF + F IFLG + + + +K + F+ I + PRF D+
Sbjct: 236 LFM-IMLFCVIFLGCDLFSI-------------MFYLKLTFISFMFIWVRGTLPRFRYDK 281
Query: 288 AAKFYWK 294
WK
Sbjct: 282 LMYLAWK 288
>gi|5835597 NADH dehydrogenase subunit 1 [Scyliorhinus canicula]
>gi|3122444|sp|O21408|NU1M_SCYCA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431952|pir||T11300 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
smaller spotted catshark mitochondrion
>gi|2340024|emb|CAA70713.1| (Y09526) NADH dehydrogenase
subunit 1 [Scyliorhinus canicula]
>gi|3618231|emb|CAA76019.1| (Y16067) NADH 1
[Scyliorhinus canicula]
Length = 324
Score = 70.2 bits (169), Expect = 3e-11
Identities = 74/309 (23%), Positives = 134/309 (42%), Gaps = 35/309 (11%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
++ + I ILL F+ I RK+ + R GP I QPI D +KLF K
Sbjct: 9 LINPLAYIIPILLATAFLTL----IERKILGYMQFRKGPNIVGPYGLLQPIADGLKLFIK 64
Query: 55 ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
+ + + F AL +L M +PL S++ L+ I + + + I+
Sbjct: 65 EPIRPSASSRSYFLATPTVALALALLMWMPLPLPH-SIINLNLGLLFILAISSLTVYTIL 123
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ-----VH 166
+ +S + YA +GA RA+ ++ +V LG ++++ + G F+ + +AQ+ +
Sbjct: 124 GSGWASNSKYALMGALRAVAQTISYEVSLGLILLSMIIFAGGFTLHTFNLAQETIWLLIP 183
Query: 167 GWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAI 226
GW + A + I A + PFD+ E+ G +E+ + +
Sbjct: 184 GWPL--------AFMWYISTLAETNRAPFDLTEGESELVSGFNIEYAAGPFALFFLAEYT 235
Query: 227 GLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLL-IKQLAVLFVAILISTIFPRFTI 285
+ +F+G T +P++ +++L +++ L VLF+ I S +PRF
Sbjct: 236 NILLMNTLSVILFMG-----TSYNPLMPQISSLSLMMKASMLTVLFLWIRAS--YPRFRY 288
Query: 286 DQAAKFYWK 294
DQ WK
Sbjct: 289 DQLMHLVWK 297
>gi|5835861 NADH dehydrogenase subunit 1 [Daphnia pulex]
>gi|7431954|pir||T11362 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Daphnia pulex mitochondrion
>gi|4927682|gb|AAD33242.1|AF117817_13 (AF117817) NADH
dehydrogenase subunit 1 [Daphnia pulex]
Length = 311
Score = 70.2 bits (169), Expect = 3e-11
Identities = 74/310 (23%), Positives = 129/310 (40%), Gaps = 40/310 (12%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGII-RKVTARVHRRIGPP------IYQPIIDTIKLFG 53
M++VI+ L+++ VG F + RK+ + R GP + QP D IKLF
Sbjct: 1 MIQVIL--FLVVVVCVLVGVAFFTLFERKLLGYIQLRKGPNKVGLGGVLQPFSDAIKLFS 58
Query: 54 KKE---NVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGI 110
K+ + ++ F F+LG ++L + IP ++L ++ L + + G+
Sbjct: 59 KEHVSPSTSNYSAFLIAPCFSLGLSLLMWLSIP-SFFNLLSFNKSVLFFLCGLGVGVYGL 117
Query: 111 MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGF-----AIVALAEYYGTFSTYEIVMAQQV 165
+ A SS + Y+ IG R + ++ +V L +V + G+FS++ Q
Sbjct: 118 LAAGWSSNSKYSLIGCLRGVAQTVSYEVSLVLILFTPLVVTVGYELGSFSSF------QE 171
Query: 166 HGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHA 225
+ W IF P A + + I A + PFD E+ G E+ ++ +
Sbjct: 172 NLWFIFIFP--AAGLIWFISCLAETNRTPFDFAEGESELVSGYNTEYSSGGFALIMLAEY 229
Query: 226 IGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTI 285
+ + FS IFLGG L + GV+ F+ + + PRF
Sbjct: 230 TSILFMSFLFSVIFLGG-------DCSFFVLVSFGVM-------AFIFVWVRGTLPRFRY 275
Query: 286 DQAAKFYWKW 295
D+ WK+
Sbjct: 276 DKLMYLAWKF 285
>gi|8844984 NADH dehydrogenase subunit 1 [Typhlonectes natans]
>gi|8650309|gb|AAF78147.1|AF154051_1 (AF154051) NADH
dehydrogenase subunit 1 [Typhlonectes natans]
Length = 320
Score = 70.2 bits (169), Expect = 3e-11
Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 23/300 (7%)
Query: 2 LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP-IYQPIIDTIKLFGKK--ENV 58
L +I+ +L + + T +G ++ + +GP + QP+ + +KLF K+ V
Sbjct: 10 LAMIIPVLLAVAFLTLAKQKVLGYMQ--VQKGPNIVGPTGLLQPVANGVKLFTKEPVRPV 67
Query: 59 THG-VIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSS 117
T +F + AL ++ +P+ S VL ++ + L + + I+ + +S
Sbjct: 68 TSSQTMFLIAPILALALSLTLWAPMPIPS-PVLDMNLGVLFVLALSSLAVYSILGSGWAS 126
Query: 118 GNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPLLL 177
+ YA +GA R++ ++ +V LG ++ GTF+ + Q+ W + LP
Sbjct: 127 NSKYALMGALRSVAQTISYEVTLGLILLCTIFLSGTFTLSNFLYTQET-TWLL--LPSWP 183
Query: 178 AAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAETLFFSN 237
A+ + I A + PFD+ E+ G VE+ G A+ AE +SN
Sbjct: 184 MAMMWYISTLAETNRSPFDLTEGESELVSGFNVEYAGG-------PFALFFLAE---YSN 233
Query: 238 IFLGGAVIT-TFSSPILNTLATLGV--LLIKQLAVLFVAILISTIFPRFTIDQAAKFYWK 294
I L + T F SP L+ A L ++IK +A+ + + + +PRF DQ WK
Sbjct: 234 ILLMNTLSTIIFISPSLHLQAELSTSNIMIKTMALSSLFLWVRASYPRFRYDQLMHLVWK 293
>gi|5835709 NADH dehydrogenase subunit 1 [Squalus acanthias]
>gi|6647631|sp|Q9ZZ54|NU1M_SQUAC NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431920|pir||T11534 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - spiny
dogfish mitochondrion >gi|4186096|emb|CAA77049.1|
(Y18134) NADH dehydrogenase subunit 1 [Squalus
acanthias]
Length = 324
Score = 69.9 bits (168), Expect = 4e-11
Identities = 73/306 (23%), Positives = 129/306 (41%), Gaps = 34/306 (11%)
Query: 2 LRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGKK 55
L IV +L + T V RK+ + R GP I QPI D +KLF K+
Sbjct: 13 LAYIVPILLATAFLTLVE-------RKILGYMQFRKGPNIVGPYGLLQPIADGVKLFIKE 65
Query: 56 E-NVTHGVIFDFGIVFALGATILALMFIPLG-SISVLRAYGDLILITFLLEIPMLGIMFA 113
+ F F L T+ LM++PL +++ L+ I + + + I+ +
Sbjct: 66 PVRPSTSSPFLFLATPTLALTLALLMWMPLPLPHAIINLNLGLLFILAVSSLTVYTILGS 125
Query: 114 AMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQ-----VHGW 168
+S + YA +GA RA+ ++ +V LG ++++ + G F+ + + Q+ V GW
Sbjct: 126 GWASNSKYALMGALRAVAQTISYEVSLGLILLSMIIFTGGFTLHTFNLTQETVWLLVPGW 185
Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGL 228
+ A+ + I A + PFD+ E+ G VE+ G + + +
Sbjct: 186 PL--------AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGSFALFFLAEYTNI 237
Query: 229 FAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQA 288
+F+G + T P ++T L++K + + + I +PRF DQ
Sbjct: 238 LMMNTLSVILFMGSSYDPTM--PQISTF----YLMMKATLLTLIFLWIRASYPRFRYDQL 291
Query: 289 AKFYWK 294
WK
Sbjct: 292 MHLVWK 297
>pir||B81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 Cj1572c
[similarity] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968989|emb|CAB73560.1| (AL139079) NADH
dehydrogenase I chain H [Campylobacter jejuni]
Length = 332
Score = 69.9 bits (168), Expect = 4e-11
Identities = 79/325 (24%), Positives = 139/325 (42%), Gaps = 37/325 (11%)
Query: 9 ILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQP------IIDTIKLFGKKENVTHGV 62
I+I ++A+ G RKV A RRIGP + P + D IKLF K++ +
Sbjct: 17 IIIAIFASLAGLATYAE-RKVLAYFQRRIGPDMVGPFGLIQLVADMIKLFTKEDIIPSN- 74
Query: 63 IFDFGIVFALGATILALM-FIPLGSISVL---RAYGDLIL-------ITFLLEIPMLGIM 111
+FA+ I A+ F+ L +I +L +G +I + L I G+
Sbjct: 75 --SQKFIFAIAPLISAICAFVSLAAIPMLPEFTLFGRVIQPIVADINVALLFVIGTSGLC 132
Query: 112 FAA-----MSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEI--VMAQQ 164
F A ++S N ++ +GA R L+++++ + A++A+ G+FS +I +
Sbjct: 133 FYAVFLGGLASNNKWSILGAARGLVSIISYESVGALALIAIIMLVGSFSLVDINNYQSDG 192
Query: 165 VHGWSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQH 224
W IF P LA + + I L + P + EI G E+ G G+ +
Sbjct: 193 FFSWLIFKQP--LAFVLFIIALFIETNRTPLCLTENDAEIVAGYGTEYSGLRWGMFFIGE 250
Query: 225 AIGLFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFT 284
+ A + + +FLGG F+S + ++++K + F FP+
Sbjct: 251 YTSMIAGAILVTLLFLGG-----FNS--FWIIPGWIMMIVKSSFIFFWYFWARAAFPQLR 303
Query: 285 IDQAAKFYWKWPTIIAALGAILASL 309
DQ K + +A L ++ +L
Sbjct: 304 PDQVMKMCYLILIPLAVLNLLITAL 328
>gi|5835975 NADH dehydrogenase subunit 1 [Vidua chalybeata]
>gi|7431927|pir||T11193 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Vidua chalybeata mitochondrion
>gi|4894502|gb|AAD32525.1|AF090341_1 (AF090341) NADH
dehydrogenase subunit I [Vidua chalybeata]
Length = 325
Score = 69.5 bits (167), Expect = 5e-11
Identities = 75/311 (24%), Positives = 138/311 (44%), Gaps = 38/311 (12%)
Query: 4 VIVNAILILLYAT--FVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
+++N I++L YA + F+ ++ RK+ + + R GP I QP+ D IKLF K
Sbjct: 6 ILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIK 65
Query: 55 ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
+ + + ++F + AL I + +PL S+ ++ + + + + I+
Sbjct: 66 EPIRPSTSSPILFIITPMLALTLAISIWVPLPL-PFSLADLNLGILFMLAMSSLAVYSIL 124
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
++ +S + YA IGA RA+ ++ +V L ++A+ G F+ + + Q+ + IF
Sbjct: 125 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILLSGNFTLSALAVTQEPM-YLIF 183
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
P A+ + I A + PFD+ E+ G V++A G FA
Sbjct: 184 --PCWPLAMMWYISTLAETNRAPFDLTEGESELVSG------------FNVEYAAGPFA- 228
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLG--------VLLIKQLAVLFVAILISTIFPRF 283
LFF + ++ T ++ + + LG VL K L + + + +PRF
Sbjct: 229 -LFFLAEYANIMLMNTLTAILFFNPSLLGLQQELFPVVLATKVLLLSAGFLWVRASYPRF 287
Query: 284 TIDQAAKFYWK 294
DQ WK
Sbjct: 288 RYDQLMHLLWK 298
>gi|5836045 NADH dehydrogenase subunit 1 [Mustelus manazo]
>gi|7431935|pir||T11764 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Mustelus manazo mitochondrion
>gi|3582410|dbj|BAA33037.1| (AB015962) NADH
dehydrogenase subunit 1 [Mustelus manazo]
Length = 324
Score = 69.1 bits (166), Expect = 7e-11
Identities = 72/303 (23%), Positives = 130/303 (42%), Gaps = 23/303 (7%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
++ + I ILL F+ I RK+ + R GP + QPI D +KLF K
Sbjct: 9 LINPLAYIIPILLATAFLTL----IERKILGYMQFRKGPNVVGPYGLLQPIADGLKLFIK 64
Query: 55 ---KENVTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIM 111
+ + + +F AL +L M +PL + G L+ I + + + I+
Sbjct: 65 EPVRPSASSPFLFLATPTAALTLALLMWMPLPLPHPIINLNLG-LLFILAISSLTVYTIL 123
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
+ +S + YA +GA RA+ ++ +V LG ++++ + G F+ + Q+ I
Sbjct: 124 GSGWASNSKYALMGALRAVAQTISYEVSLGLILLSMIVFAGGFTLHTFNTTQETIWLLIP 183
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
PL A+ + I A + PFD+ E+ G +E+ G + + +
Sbjct: 184 GWPL---ALMWYISTLAETNRAPFDLTEGESELVSGFNIEYAGGPFALFFLAEYTNILLM 240
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
+F+G + +P+ L+T L++K + F+ + I +PRF DQ
Sbjct: 241 NTLSVILFMGISY-----NPLFPQLSTFN-LMMKATLLTFIFLWIRASYPRFRYDQLMHL 294
Query: 292 YWK 294
WK
Sbjct: 295 VWK 297
>gi|5835765 NADH dehydrogenase subunit 1 [Orycteropus afer]
>gi|7431953|pir||T11337 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - aardvark mitochondrion
>gi|4691354|emb|CAB41621.1| (Y18475) NADH dehydrogenase
subunit 1 [Orycteropus afer]
Length = 317
Score = 69.1 bits (166), Expect = 7e-11
Identities = 73/303 (24%), Positives = 128/303 (42%), Gaps = 26/303 (8%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIY------QPIIDTIKLFGK 54
+L +I+ +L + + T V RK + R GP I QPI D KLF K
Sbjct: 6 LLSLIIPILLAVAFLTLVE-------RKTLGYMQLRKGPNIVGPYGLLQPIADAAKLFIK 58
Query: 55 K--ENVTHGVIFDFGIVFALGATILALMFIPLGS-ISVLRAYGDLILITFLLEIPMLGIM 111
+ T + F I L T+ M+IPL ++ ++ I + + + I+
Sbjct: 59 EPLRPATSSTLM-FTIAPILALTLALTMWIPLPMPYPLINMNLGILFILAISSLAVYSIL 117
Query: 112 FAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGWSIF 171
++ +S + YA IGA RA+ ++ +V L ++++ G+F+ + + Q+ H W I
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVSLAIILLSVMLINGSFTLASLTITQE-HIWLI- 175
Query: 172 HLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLFAE 231
+P A+ + I A + PFD+ E+ G VE+ + + +
Sbjct: 176 -IPTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIIMM 234
Query: 232 TLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQAAKF 291
+ +FLG +F + L T +L K + + + I +PRF DQ
Sbjct: 235 NALTTLLFLG-----SFHNHAHPELFTTNFIL-KTMILTICFLWIRASYPRFRYDQLMHL 288
Query: 292 YWK 294
WK
Sbjct: 289 LWK 291
>gb|AAA65487.1| (M57527) NDI [Rana catesbeiana]
Length = 324
Score = 68.7 bits (165), Expect = 9e-11
Identities = 86/309 (27%), Positives = 143/309 (45%), Gaps = 32/309 (10%)
Query: 2 LRVIVNAILILLYAT--FVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLF 52
++++ +L LLY + F+ +I RK+ + R GP + QPI D +KLF
Sbjct: 1 MKLLFMYLLPLLYIAPILLAVAFLTLIERKILGYMQHRKGPNVVGPFGLLQPIADGVKLF 60
Query: 53 GKKENVTHGVIFDFGIVFALGATI-LALMFIPLGSISVLRAYGDLIL-ITFLLEIPMLG- 109
KE + ++F L T+ LAL I + Y +L L I F+L I L
Sbjct: 61 -IKEPIRPSTSSQ--LLFILAPTLALALAMIMWTPFPLPIPYSNLNLSILFILAISSLTV 117
Query: 110 --IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
I+ + +S + YA IGA RA+ ++ +V L I+ G F+ ++Q+
Sbjct: 118 YTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILCSVLLAGGFTLSAFAISQE--- 174
Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAI 226
++ F LPL + + + A + PFD+ E+ G VE+ GG + ++A
Sbjct: 175 FTWFILPLWPMFLMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 234
Query: 227 GLFAETLFFSNIFLGGAVIT-TFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTI 285
L TL + IFLG + + T ++ +L T A++ L++ F+ + S +PRF
Sbjct: 235 ILMMNTLS-TIIFLGSCMSSLTLTTSLLMTKASI-------LSLCFLWVRAS--YPRFRY 284
Query: 286 DQAAKFYWK 294
DQ WK
Sbjct: 285 DQLMHLVWK 293
>sp|P16672|NU1M_RANCA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1
Length = 325
Score = 68.7 bits (165), Expect = 9e-11
Identities = 86/309 (27%), Positives = 143/309 (45%), Gaps = 32/309 (10%)
Query: 2 LRVIVNAILILLYAT--FVGFMFMGII-RKVTARVHRRIGPPIY------QPIIDTIKLF 52
++++ +L LLY + F+ +I RK+ + R GP + QPI D +KLF
Sbjct: 1 MKLLFMYLLPLLYIAPILLAVAFLTLIERKILGYMQHRKGPNVVGPFGLLQPIADGVKLF 60
Query: 53 GKKENVTHGVIFDFGIVFALGATI-LALMFIPLGSISVLRAYGDLIL-ITFLLEIPMLG- 109
KE + ++F L T+ LAL I + Y +L L I F+L I L
Sbjct: 61 -IKEPIRPSTSSQ--LLFILAPTLALALAMIMWTPFPLPIPYSNLNLSILFILAISSLTV 117
Query: 110 --IMFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHG 167
I+ + +S + YA IGA RA+ ++ +V L I+ G F+ ++Q+
Sbjct: 118 YTILGSGWASNSKYALIGALRAVAQTISYEVTLALIILCSVLLAGGFTLSAFAISQE--- 174
Query: 168 WSIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEF-GGKYLGILQVQHAI 226
++ F LPL + + + A + PFD+ E+ G VE+ GG + ++A
Sbjct: 175 FTWFILPLWPMFLMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYAN 234
Query: 227 GLFAETLFFSNIFLGGAVIT-TFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTI 285
L TL + IFLG + + T ++ +L T A++ L++ F+ + S +PRF
Sbjct: 235 ILMMNTLS-TIIFLGSCMSSLTLTTSLLMTKASI-------LSLCFLWVRAS--YPRFRY 284
Query: 286 DQAAKFYWK 294
DQ WK
Sbjct: 285 DQLMHLVWK 293
>gb|AAF81367.1|AF164578_2 (AF164578) NADH dehydrogenase subunit 1 [Drosophila ananassae]
Length = 314
Score = 68.7 bits (165), Expect = 9e-11
Identities = 79/307 (25%), Positives = 132/307 (42%), Gaps = 35/307 (11%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
+L +I + +LI+ V F+ + + RKV + R GP I QP D IKLF K
Sbjct: 4 VLSLIGSLLLIICVLVSVAFLTL-LERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTK 62
Query: 55 KEN---VTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGI- 110
++ +++ + + +F+L ++ M +P ++ Y + F L LG+
Sbjct: 63 EQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF----FVKLYSFNLGGLFFLCCTSLGVY 118
Query: 111 --MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
M A SS + YA +G RA+ ++ +V L +++ G+++ Q++ W
Sbjct: 119 TVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMVYFYY-YQIYMW 177
Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFG-GKYLGILQVQHAIG 227
F + L A+ + + A + PFD E+ G VE+ G + I ++A
Sbjct: 178 --FLVILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYASI 235
Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
LF LF S IFLG V + F +K + FV I PRF D+
Sbjct: 236 LFMSMLF-SVIFLGCDVFSLF-------------FYVKLTFISFVFIWARGTLPRFRYDK 281
Query: 288 AAKFYWK 294
WK
Sbjct: 282 LMYLAWK 288
>gb|AAF81369.1|AF164579_2 (AF164579) NADH dehydrogenase subunit 1 [Drosophila malerkotliana]
Length = 314
Score = 68.7 bits (165), Expect = 9e-11
Identities = 79/307 (25%), Positives = 131/307 (41%), Gaps = 35/307 (11%)
Query: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPP------IYQPIIDTIKLFGK 54
+L +I + +LI+ V F+ + + RKV + R GP I QP D IKLF K
Sbjct: 4 ILSLIGSLLLIICVLVSVAFLTL-LERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLFTK 62
Query: 55 KEN---VTHGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGI- 110
++ +++ + + +F+L ++ M +P ++ Y + F L LG+
Sbjct: 63 EQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF----FVKLYSFNLGGLFFLCCTSLGVY 118
Query: 111 --MFAAMSSGNPYAGIGAQRALLTLLAIQVPLGFAIVALAEYYGTFSTYEIVMAQQVHGW 168
M A SS + YA +G RA+ ++ +V L +++ G+++ Q++ W
Sbjct: 119 TVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFYY-YQIYMW 177
Query: 169 SIFHLPLLLAAIAYDIVLQAMFGKEPFDIMIAPGEISLGPMVEFG-GKYLGILQVQHAIG 227
F + L A+ + + A + PFD E+ G VE+ G + I ++A
Sbjct: 178 --FLIILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFMAEYASI 235
Query: 228 LFAETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIFPRFTIDQ 287
LF LF S IFLG V F +K + FV I PRF D+
Sbjct: 236 LFMSMLF-SVIFLGCDVFNLF-------------FYVKLTFISFVFIWARGTLPRFRYDK 281
Query: 288 AAKFYWK 294
WK
Sbjct: 282 LMYLAWK 288
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.332 0.148 0.436
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101470071
Number of Sequences: 2977
Number of extensions: 4096457
Number of successful extensions: 13749
Number of sequences better than 1.0e-10: 213
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 13286
Number of HSP's gapped (non-prelim): 222
length of query: 309
length of database: 189,106,746
effective HSP length: 51
effective length of query: 258
effective length of database: 158,583,909
effective search space: 40914648522
effective search space used: 40914648522
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 165 (68.7 bits)